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Vermaak A, Smit NJ, Kudlai O. Molecular characterisation of three species of Coitocaecum (Digenea: Opecoelidae) infecting Clinus superciliosus (Clinidae) in South Africa, with description of Coitocaecum brayi sp. n. Folia Parasitol (Praha) 2023; 70:2023.015. [PMID: 37522654 DOI: 10.14411/fp.2023.015] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2023] [Accepted: 06/10/2023] [Indexed: 08/01/2023]
Abstract
The genus Coitocaecum Nicoll, 1915 is part of the most speciose digenean family, the Opecoelidae Ozaki, 1925, which is found globally in both freshwater and marine fishes. Fifteen opecoelid species have been reported from marine fishes in South Africa, yet only one species of Coitocaecum has been described from this region: Coitocaecum capense Bray, 1987. During an explorative study of the digeneans of the endemic, intertidal fish Clinus superciliosus (Linnaeus) from the Saldanha Bay area, Cape Town harbour, Hermanus, the Tsitsikamma section of the Garden Route National Park and Chintsa East in South Africa, a total of three distinct species of Coitocaecum were identified based on morphological and molecular (28S rDNA, ITS1-5.8S-ITS2 rDNA and COI mtDNA) data: the previously mentioned C. capense, Coitocaecum brayi sp. n. and a third, unnamed species. We provide the first molecular characterisation of species of Coitocaecum from South Africa, accompanied by detailed morphological descriptions. This study illustrates the importance of an integrated taxonomic approach, especially when studying species with similar morphology. These findings further emphasise the lack of information on the true diversity and molecular data for trematodes of marine fishes in South Africa, creating a great capacity for future explorative taxonomic studies and highlighting the use of intertidal areas for conducting such research.
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Affiliation(s)
- Anja Vermaak
- Water Research Group, Unit for Environmental Sciences and Management, Potchefstroom Campus, North-West University, Potchefstroom, South Africa
| | - Nico J Smit
- Water Research Group, Unit for Environmental Sciences and Management, Potchefstroom Campus, North-West University, Potchefstroom, South Africa
| | - Olena Kudlai
- Water Research Group, Unit for Environmental Sciences and Management, Potchefstroom Campus, North-West University, Potchefstroom, South Africa
- Institute of Ecology, Nature Research Centre, Vilnius, Lithuania
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Erasmus A, Wepener V, Hadfield KA, Sures B, Smit NJ. Metazoan parasite diversity of the endemic South African intertidal klipfish, Clinus superciliosus: Factors influencing parasite community composition. Parasitol Int 2022; 90:102611. [PMID: 35750274 DOI: 10.1016/j.parint.2022.102611] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2022] [Revised: 06/16/2022] [Accepted: 06/16/2022] [Indexed: 11/29/2022]
Abstract
The current trend in marine parasitology research, particularly in South Africa, is to focus on a specific parasite taxon and not on the total parasite community of a specific fish host. However, these records do not always reveal the ecological role of parasites in ecosystems. Thus, the present study aimed to determine which factors influence the parasite community composition of the endemic southern African intertidal klipfish, Clinus superciliosus (n = 75). Metazoan parasites were sampled from four localities (two commercial harbours - west coast; and two relatively pristine localities - southeast coast) along the South African coast. A total of 75 klipfish were examined for parasites, where 30 distinct taxa, representing seven taxonomic groups were found: Acanthocephala (4 taxa), Cestoda (2 taxa), Crustacea (5 taxa), Digenea (11 taxa), Hirudinea (2 taxa), Monogenea (1 taxon) and Nematoda (5 taxa). Results indicated that the main driver of diversity was locality, with the highest diversity on the southeast coast, most likely due to higher water temperatures and upwelling compared to the west coast. The parasite community composition of the klipfish was significantly influenced by water temperature and parasite life cycle. These results emphasise the importance of parasitological surveys including all parasite taxa in hosts from multiple localities and seasons, to better comprehend their ecological role.
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Affiliation(s)
- Anja Erasmus
- Water Research Group, Unit for Environmental Sciences and Management, North-West University, Private Bag X6001, Potchefstroom 2520, South Africa.
| | - Victor Wepener
- Water Research Group, Unit for Environmental Sciences and Management, North-West University, Private Bag X6001, Potchefstroom 2520, South Africa
| | - Kerry A Hadfield
- Water Research Group, Unit for Environmental Sciences and Management, North-West University, Private Bag X6001, Potchefstroom 2520, South Africa
| | - Bernd Sures
- Water Research Group, Unit for Environmental Sciences and Management, North-West University, Private Bag X6001, Potchefstroom 2520, South Africa; Department of Aquatic Ecology and Centre for Water and Environmental Research, University of Duisburg-Essen, Universitätsstr. 5, Essen 45141, Germany
| | - Nico J Smit
- Water Research Group, Unit for Environmental Sciences and Management, North-West University, Private Bag X6001, Potchefstroom 2520, South Africa
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Vermaak A, Smit NJ, Kudlai O. Molecular and morphological characterisation of the metacercariae of two species of Cardiocephaloides (Digenea: Strigeidae) infecting endemic South African klipfish (Perciformes: Clinidae). Folia Parasitol (Praha) 2021; 68. [PMID: 33847601 DOI: 10.14411/fp.2021.007] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2020] [Accepted: 11/23/2020] [Indexed: 11/19/2022]
Abstract
South African clinids are a major component of the temperate intertidal regions that are also known to participate in life cycles and transmission of several groups of parasites. However, the knowledge of trematode diversity of these fishes is incomplete. In this study, two species of Clinus Cuvier, the super klipfish Clinus superciliosus (Linnaeus) and the bluntnose klipfish Clinus cottoides Valenciennes, were collected from six localities along the South African coast and examined for the presence of trematodes. Metacercariae of Cardiocephaloides Sudarikov, 1959 were found in the eye vitreous humour and brain of C. superciliosus and in the eye vitreous humour of C. cottoides. Detailed analyses integrating morphological and molecular sequence data (28S rDNA, ITS2 rDNA-region, and COI mtDNA) revealed that these belong to two species, Cardiocephaloides physalis (Lutz, 1926) and an unknown species of Cardiocephaloides. This study provides the first report of clinid fishes serving as intermediate hosts for trematodes, reveals that the diversity of Cardiocephaloides in South Africa is higher than previously recorded, and highlights the need for further research to elucidate the life cycles of these trematode species. The broad geographical distribution of Cardiocephaloides spp. was confirmed in the present study based on molecular sequence data. The host-parasite interactions between clinid fishes and metacercariae of Cardiocephaloides are yet to be explored.
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Affiliation(s)
- Anja Vermaak
- Water Research Group, Unit for Environmental Sciences and Management, North-West University, Potchefstroom, South Africa
| | - Nico J Smit
- Water Research Group, Unit for Environmental Sciences and Management, North-West University, Potchefstroom, South Africa
| | - Olena Kudlai
- Water Research Group, Unit for Environmental Sciences and Management, North-West University, Potchefstroom, South Africa.,Institute of Ecology, Nature Research Centre, Vilnius, Lithuania.,Institute of Parasitology, Biology Centre of the Czech Academy of Sciences, Ceske Budejovice, Czech Republic
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Langeneck J, Scarpa F, Maltagliati F, Sanna D, Barbieri M, Cossu P, Mikac B, Curini Galletti M, Castelli A, Casu M. A complex species complex: The controversial role of ecology and biogeography in the evolutionary history of
Syllis gracilis
Grube, 1840 (Annelida, Syllidae). J ZOOL SYST EVOL RES 2019. [DOI: 10.1111/jzs.12336] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
| | - Fabio Scarpa
- Dipartimento di Medicina Veterinaria Università degli Studi di Sassari Sassari Italy
| | | | - Daria Sanna
- Dipartimento di Scienze Biomediche Università degli Studi di Sassari Sassari Italy
| | | | - Piero Cossu
- Dipartimento di Medicina Veterinaria Università degli Studi di Sassari Sassari Italy
| | - Barbara Mikac
- Centro Interdipartimentale di Ricerca per le Scienze Ambientali (CIRSA) Università di Bologna Ravenna Italy
| | - Marco Curini Galletti
- Dipartimento di Medicina Veterinaria Università degli Studi di Sassari Sassari Italy
| | | | - Marco Casu
- Dipartimento di Medicina Veterinaria Università degli Studi di Sassari Sassari Italy
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Bartošová-Sojková P, Lövy A, Reed CC, Lisnerová M, Tomková T, Holzer AS, Fiala I. Life in a rock pool: Radiation and population genetics of myxozoan parasites in hosts inhabiting restricted spaces. PLoS One 2018; 13:e0194042. [PMID: 29561884 PMCID: PMC5862482 DOI: 10.1371/journal.pone.0194042] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2017] [Accepted: 02/25/2018] [Indexed: 12/11/2022] Open
Abstract
Introduction Intertidal rock pools where fish and invertebrates are in constant close contact due to limited space and water level fluctuations represent ideal conditions to promote life cycles in parasites using these two alternate hosts and to study speciation processes that could contribute to understanding the roles of parasitic species in such ecosystems. Material and methods Gall bladder and liver samples from five clinid fish species (Blenniiformes: Clinidae) were morphologically and molecularly examined to determine the diversity, prevalence, distribution and host specificity of Ceratomyxa parasites (Cnidaria: Myxozoa) in intertidal habitats along the coast of South Africa. Phylogenetic relationships of clinid ceratomyxids based on the SSU rDNA, LSU rDNA and ITS regions were assessed additionally to the investigation of population genetic structure of Ceratomyxa cottoidii and subsequent comparison with the data known from type fish host Clinus cottoides. Results and discussion Seven Ceratomyxa species including previously described Ceratomyxa dehoopi and C. cottoidii were recognized in clinids. They represent a diverse group of rapidly evolving, closely related species with a remarkably high prevalence in their hosts, little host specificity and frequent concurrent infections, most probably as a result of parasite radiation after multiple speciation events triggered by limited host dispersal within restricted spaces. C. cottoidii represents the most common clinid parasite with a population structure characterized by young expanding populations in the south west and south east coast and by older populations in equilibrium on the west coast of its distribution. Parasite and fish host population structures show overlapping patterns and are very likely affected by similar oceanographic barriers possibly due to reduced host dispersal enhancing parasite community differentiation. While fish host specificity had little impact on parasite population structure, the habitat preference of the alternate invertebrate host as well as tidal water exchange may be additional crucial variables affecting the dispersal and associated population structure of C. cottoidii.
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Affiliation(s)
- Pavla Bartošová-Sojková
- Institute of Parasitology, Biology Centre of the Czech Academy of Sciences, České Budějovice, Czech Republic
- * E-mail:
| | - Alena Lövy
- Institute of Parasitology, Biology Centre of the Czech Academy of Sciences, České Budějovice, Czech Republic
| | - Cecile C. Reed
- Department of Biological Sciences, University of Cape Town, Rondebosch, South Africa
| | - Martina Lisnerová
- Institute of Parasitology, Biology Centre of the Czech Academy of Sciences, České Budějovice, Czech Republic
- Faculty of Science, University of South Bohemia in České Budějovice, České Budějovice, Czech Republic
| | - Tereza Tomková
- Faculty of Science, University of South Bohemia in České Budějovice, České Budějovice, Czech Republic
| | - Astrid S. Holzer
- Institute of Parasitology, Biology Centre of the Czech Academy of Sciences, České Budějovice, Czech Republic
- Faculty of Science, University of South Bohemia in České Budějovice, České Budějovice, Czech Republic
| | - Ivan Fiala
- Institute of Parasitology, Biology Centre of the Czech Academy of Sciences, České Budějovice, Czech Republic
- Faculty of Science, University of South Bohemia in České Budějovice, České Budějovice, Czech Republic
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Nielsen ES, Beger M, Henriques R, Selkoe KA, von der Heyden S. Multispecies genetic objectives in spatial conservation planning. CONSERVATION BIOLOGY : THE JOURNAL OF THE SOCIETY FOR CONSERVATION BIOLOGY 2017; 31:872-882. [PMID: 27925351 DOI: 10.1111/cobi.12875] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/15/2016] [Revised: 11/22/2016] [Accepted: 11/27/2016] [Indexed: 06/06/2023]
Abstract
Growing threats to biodiversity and global alteration of habitats and species distributions make it increasingly necessary to consider evolutionary patterns in conservation decision making. Yet, there is no clear-cut guidance on how genetic features can be incorporated into conservation-planning processes, despite multiple molecular markers and several genetic metrics for each marker type to choose from. Genetic patterns differ between species, but the potential tradeoffs among genetic objectives for multiple species in conservation planning are currently understudied. We compared spatial conservation prioritizations derived from 2 metrics of genetic diversity (nucleotide and haplotype diversity) and 2 metrics of genetic isolation (private haplotypes and local genetic differentiation) in mitochondrial DNA of 5 marine species. We compared outcomes of conservation plans based only on habitat representation with plans based on genetic data and habitat representation. Fewer priority areas were selected for conservation plans based solely on habitat representation than on plans that included habitat and genetic data. All 4 genetic metrics selected approximately similar conservation-priority areas, which is likely a result of prioritizing genetic patterns across a genetically diverse array of species. Largely, our results suggest that multispecies genetic conservation objectives are vital to creating protected-area networks that appropriately preserve community-level evolutionary patterns.
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Affiliation(s)
- Erica S Nielsen
- Evolutionary Genomics Group, Department of Botany and Zoology, University of Stellenbosch, Private Bag X1, 7602, Stellenbosch, South Africa
| | - Maria Beger
- School of Biology, University of Leeds, Leeds, LS2 9JT, U.K
| | - Romina Henriques
- Evolutionary Genomics Group, Department of Botany and Zoology, University of Stellenbosch, Private Bag X1, 7602, Stellenbosch, South Africa
| | - Kimberly A Selkoe
- National Center for Ecological Analysis and Synthesis, University of California, 735 State Street, Santa Barbara, CA, 93101, U.S.A
| | - Sophie von der Heyden
- Evolutionary Genomics Group, Department of Botany and Zoology, University of Stellenbosch, Private Bag X1, 7602, Stellenbosch, South Africa
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7
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Milá B, Van Tassell JL, Calderón JA, Rüber L, Zardoya R. Cryptic lineage divergence in marine environments: genetic differentiation at multiple spatial and temporal scales in the widespread intertidal goby Gobiosoma bosc. Ecol Evol 2017; 7:5514-5523. [PMID: 28770087 PMCID: PMC5528222 DOI: 10.1002/ece3.3161] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2017] [Revised: 05/22/2017] [Accepted: 05/23/2017] [Indexed: 01/01/2023] Open
Abstract
The adaptive radiation of the seven-spined gobies (Gobiidae: Gobiosomatini) represents a classic example of how ecological specialization and larval retention can drive speciation through local adaptation. However, geographically widespread and phenotypically uniform species also do occur within Gobiosomatini. This lack of phenotypic variation across large geographic areas could be due to recent colonization, widespread gene flow, or stabilizing selection acting across environmental gradients. We use a phylogeographic approach to test these alternative hypotheses in the naked goby Gobiosoma bosc, a widespread and phenotypically invariable intertidal fish found along the Atlantic Coast of North America. Using DNA sequence from 218 individuals sampled at 15 localities, we document marked intraspecific genetic structure in mitochondrial and nuclear genes at three main geographic scales: (i) between Gulf of Mexico and Atlantic Coast, (ii) between the west coast of the Florida peninsula and adjacent Gulf of Mexico across the Apalachicola Bay, and (iii) at local scales of a few hundred kilometers. Clades on either side of Florida diverged about 8 million years ago, whereas some populations along the East Cost show divergent phylogroups that have differentiated within the last 200,000 years. The absence of noticeable phenotypic or ecological differentiation among lineages suggests the role of stabilizing selection on ancestral phenotypes, together with isolation in allopatry due to reduced dispersal and restricted gene flow, as the most likely explanation for their divergence. Haplotype phylogenies and spatial patterns of genetic diversity reveal frequent population bottlenecks followed by rapid population growth, particularly along the Gulf of Mexico. The magnitude of the genetic divergence among intraspecific lineages suggests the existence of cryptic species within Gobiosoma and indicates that modes of speciation can vary among lineages within Gobiidae.
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Affiliation(s)
- Borja Milá
- National Museum of Natural SciencesSpanish National Research Council (CSIC)MadridSpain
| | - James L. Van Tassell
- Department of IchthyologyAmerican Museum of Natural HistoryNew York, NY 10024USA
| | - Jatziri A. Calderón
- National Museum of Natural SciencesSpanish National Research Council (CSIC)MadridSpain
| | - Lukas Rüber
- Naturhistorisches Museum der BurgergemeindeBernBernastrasse 15, 3005 BernSwitzerland
- Institute of Ecology and EvolutionUniversity of BernBaltzerstrasse 6, 3012 BernSwitzerland
| | - Rafael Zardoya
- National Museum of Natural SciencesSpanish National Research Council (CSIC)MadridSpain
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8
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De Biasi JB, Tomás ARG, Hilsdorf AWS. Molecular evidence of two cryptic species of Stramonita (Mollusca, Muricidae) in the southeastern Atlantic coast of Brazil. Genet Mol Biol 2016; 39:392-7. [PMID: 27560649 PMCID: PMC5004829 DOI: 10.1590/1678-4685-gmb-2015-0199] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2015] [Accepted: 01/27/2016] [Indexed: 11/22/2022] Open
Abstract
Snails of the genus Stramonita are commonly found in the rocky intertidal habitat of the western Atlantic Ocean coast. They belong to a monophyletic taxon that occurs along the tropical and warm-temperate Atlantic and eastern Pacific rocky shores. This genus comprises different valid species and members of the S. haemastoma complex. In the present study, samples of Stramonita were collected from three different regions of southeastern Brazil. Partial sequences of two mitochondrial genes, COI and 16S rRNA, were used to compare nucleotides sequences between Stramonita specimens. Levels of nucleotide divergence greater than 2% across the three sampled regions were used for differentiation at the species level. One of the identified species was S. brasiliensis, which has recently been described by molecular analysis; the other species may represent S. haemastoma, not yet described in the southeastern Brazilian coast.
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Affiliation(s)
| | - Acácio Ribeiro Gomes Tomás
- Centro Avançado de Pesquisa Tecnológica do Agronegócio do Pescado Marinho, Instituto de Pesca, Santos, SP, Brazil
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9
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Nagpure NS, Rashid I, Pathak AK, Singh M, Pati R, Singh SP, Sarkar UK. FMiR: A Curated Resource of Mitochondrial DNA Information for Fish. PLoS One 2015; 10:e0136711. [PMID: 26317619 PMCID: PMC4552752 DOI: 10.1371/journal.pone.0136711] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2014] [Accepted: 08/07/2015] [Indexed: 11/18/2022] Open
Abstract
Mitochondrial genome sequences have been widely used for evolutionary and phylogenetic studies. Among vertebrates, fish are an important, diverse group, and their mitogenome sequences are growing rapidly in public repositories. To facilitate mitochondrial genome analysis and to explore the valuable genetic information, we developed the Fish Mitogenome Resource (FMiR) database to provide a workbench for mitogenome annotation, species identification and microsatellite marker mining. The microsatellites are also known as simple sequence repeats (SSRs) and used as molecular markers in studies on population genetics, gene duplication and marker assisted selection. Here, easy-to-use tools have been implemented for mining SSRs and for designing primers to identify species/habitat specific markers. In addition, FMiR can analyze complete or partial mitochondrial genome sequence to identify species and to deduce relational distances among sequences across species. The database presently contains curated mitochondrial genomes from 1302 fish species belonging to 297 families and 47 orders reported from saltwater and freshwater ecosystems. In addition, the database covers information on fish species such as conservation status, ecosystem, family, distribution and occurrence downloaded from the FishBase and IUCN Red List databases. Those fish information have been used to browse mitogenome information for the species belonging to a particular category. The database is scalable in terms of content and inclusion of other analytical modules. The FMiR is running under Linux operating platform on high performance server accessible at URL http://mail.nbfgr.res.in/fmir.
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Affiliation(s)
- Naresh Sahebrao Nagpure
- Division of Molecular Biology and Biotechnology, National Bureau of Fish Genetic Resources, Lucknow-226002, India
| | - Iliyas Rashid
- Division of Molecular Biology and Biotechnology, National Bureau of Fish Genetic Resources, Lucknow-226002, India
| | - Ajey Kumar Pathak
- Division of Fish Taxonomy and Resources, National Bureau of Fish Genetic Resources, Lucknow-226002, India
| | - Mahender Singh
- Division of Molecular Biology and Biotechnology, National Bureau of Fish Genetic Resources, Lucknow-226002, India
- * E-mail:
| | - Rameshwar Pati
- Division of Molecular Biology and Biotechnology, National Bureau of Fish Genetic Resources, Lucknow-226002, India
| | - Shri Prakash Singh
- Division of Fish Taxonomy and Resources, National Bureau of Fish Genetic Resources, Lucknow-226002, India
| | - Uttam Kumar Sarkar
- Division of Fish Taxonomy and Resources, National Bureau of Fish Genetic Resources, Lucknow-226002, India
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The evolutionary history of the embiotocid surfperch radiation based on genome-wide RAD sequence data. Mol Phylogenet Evol 2015; 88:55-63. [DOI: 10.1016/j.ympev.2015.03.027] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2014] [Revised: 03/29/2015] [Accepted: 03/31/2015] [Indexed: 01/19/2023]
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Toms JA, Compton JS, Smale M, von der Heyden S. Variation in palaeo-shorelines explains contemporary population genetic patterns of rocky shore species. Biol Lett 2015; 10:rsbl.2014.0330. [PMID: 24966206 DOI: 10.1098/rsbl.2014.0330] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Processes driving and maintaining disjunct genetic populations in marine systems are poorly understood, owing to a lack of evidence of hard barriers that could have shaped patterns of extant population structure. Here, we map two genetically divergent lineages of an obligate rocky shore fish, Clinus cottoides, and model sea-level change during the last 110 000 years to provide the first evidence of a vicariant event along the southern coastline of Africa. Results reveal that lowered sea levels during glacial periods drastically reduced rocky intertidal habitat, which may have isolated populations in two refugia for at least 40 000 years. Contemporary coastal dynamics and oceanography explain secondary contact between lineages. This scenario provides an explanation for the origin of population genetic breaks despite a lack of obvious present-day geographical barriers and highlights the need for including palaeo-oceanography in unravelling extant population patterns.
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Affiliation(s)
- Jessica A Toms
- Evolutionary Genomics Group, Department of Botany and Zoology, Stellenbosch University, Private Bag XI, Matieland 7602, South Africa
| | - John S Compton
- Department of Geological Sciences, University of Cape Town, Rondebosch 7701, South Africa
| | - Malcolm Smale
- Department of Zoology, Nelson Mandela Metropolitan University, PO Box 77000, Port Elizabeth, South Africa
| | - Sophie von der Heyden
- Evolutionary Genomics Group, Department of Botany and Zoology, Stellenbosch University, Private Bag XI, Matieland 7602, South Africa
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12
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Wright D, Bishop JM, Matthee CA, von der Heyden S. Genetic isolation by distance reveals restricted dispersal across a range of life histories: implications for biodiversity conservation planning across highly variable marine environments. DIVERS DISTRIB 2015. [DOI: 10.1111/ddi.12302] [Citation(s) in RCA: 58] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022] Open
Affiliation(s)
- Daniel Wright
- Percy FitzPatrick Institute; DST/NRF Centre of Excellence; Department of Biological Sciences; University of Cape Town; Private Bag X3 Rondebosch 7701 South Africa
| | - Jacqueline M. Bishop
- Department of Biological Sciences; University of Cape Town; Private Bag X3 Rondebosch 7701 South Africa
| | - Conrad A. Matthee
- Evolutionary Genomics Group; Department of Botany and Zoology; Stellenbosch University; Private Bag X1 Matieland 7602 South Africa
| | - Sophie von der Heyden
- Evolutionary Genomics Group; Department of Botany and Zoology; Stellenbosch University; Private Bag X1 Matieland 7602 South Africa
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13
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Morphology and phylogeny of two new species of Sphaeromyxa Thélohan, 1892 (Cnidaria: Myxozoa) from marine fish (Clinidae and Trachichthyidae). Parasitology 2014; 142:660-74. [DOI: 10.1017/s0031182014001723] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
SUMMARYOur survey of marine fish from South Africa and Indonesia revealed the presence of two new myxosporean species of the genus Sphaeromyxa for which we provide morphological and sequence data. Sphaeromyxa clini n. sp. detected in three Clinus spp. and Muraenoclinus dorsalis from South Africa is morphologically similar to Sphaeromyxa noblei previously described from Heteroclinus whiteleggii from Australia and to several other sphaeromyxids with arcuate spores and rounded ends. This similarity is reflected by phylogenetic positioning of S. clini n. sp. which clusters within the ‘incurvata’ group of the Sphaeromyxa clade. It differs from morphologically similar species by spore and polar capsule dimensions, host specificity and geographic distribution. Sphaeromyxa limocapitis n. sp., described from Gephyroberyx darwinii from Java, is morphologically similar to sphaeromyxids with straight spores and to marine Myxidium species with spindle-shaped spores but differs from them by spore and polar capsule dimensions, host specificity and geographic distribution. S. limocapitis n. sp. represents a separate lineage of the Sphaeromyxa clade and appears to be a missing link in the evolution of sphaeromyxids.
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14
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Bernardi G. Baja California disjunctions and phylogeographic patterns in sympatric California blennies. Front Ecol Evol 2014. [DOI: 10.3389/fevo.2014.00053] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023] Open
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15
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Poortvliet M, Longo GC, Selkoe K, Barber PH, White C, Caselle JE, Perez-Matus A, Gaines SD, Bernardi G. Phylogeography of the California sheephead, Semicossyphus pulcher: the role of deep reefs as stepping stones and pathways to antitropicality. Ecol Evol 2013; 3:4558-71. [PMID: 24340195 PMCID: PMC3856754 DOI: 10.1002/ece3.840] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2013] [Revised: 08/30/2013] [Accepted: 09/02/2013] [Indexed: 11/06/2022] Open
Abstract
In the past decade, the study of dispersal of marine organisms has shifted from focusing predominantly on the larval stage to a recent interest in adult movement. Antitropical distributions provide a unique system to assess vagility and dispersal. In this study, we have focused on an antitropical wrasse genus, Semicossyphus, which includes the California sheephead, S. pulcher, and Darwin's sheephead, S. darwini. Using a phylogenetic approach based on mitochondrial and nuclear markers, and a population genetic approach based on mitochondrial control region sequences and 10 microsatellite loci, we compared the phylogenetic relationships of these two species, as well as the population genetic characteristics within S. pulcher. While S. pulcher and S. darwini are found in the temperate eastern Pacific regions of the northern and southern hemispheres, respectively, their genetic divergence was very small (estimated to have occurred between 200 and 600 kya). Within S. pulcher, genetic structuring was generally weak, especially along mainland California, but showed weak differentiation between Sea of Cortez and California, and between mainland California and Channel Islands. We highlight the congruence of weak genetic differentiation both within and between species and discuss possible causes for maintenance of high gene flow. In particular, we argue that deep and cooler water refugia are used as stepping stones to connect distant populations, resulting in low levels of genetic differentiation.
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Affiliation(s)
- Marloes Poortvliet
- Department of Ecology and Evolutionary Biology, University of California Santa CruzSanta Cruz, California, 95076
- Department of Marine Benthic Ecology and Evolution, Centre for Ecological and Evolutionary Studies, University of GroningenNijenborgh 7, 9747 AG, Groningen, The Netherlands
| | - Gary C Longo
- Department of Ecology and Evolutionary Biology, University of California Santa CruzSanta Cruz, California, 95076
| | - Kimberly Selkoe
- Marine Science Institute, University of California Santa BarbaraSanta Barbara, California, 93106
- Hawai'i Institute of Marine Biology, University of Hawai'iKane'ohe, Hawaii, 96744
| | - Paul H Barber
- Department of Ecology and Evolutionary Biology and the Institute of the Environment and Sustainability, University of California Los Angeles621 Charles E. Young Dr. South, Los Angeles, California, 90095
| | - Crow White
- Marine Science Institute, University of California Santa BarbaraSanta Barbara, California, 93106
- Biological Sciences Department, California Polytechnic State UniversitySan Luis Obispo, California, 93407
| | - Jennifer E Caselle
- Marine Science Institute, University of California Santa BarbaraSanta Barbara, California, 93106
| | - Alejandro Perez-Matus
- Subtidal Ecology Laboratory & Center for Marine Conservation, Pontificia Universidad Católica de Chile, Estación Costera de Investigaciones MarinasCasilla 114-D, Santiago, Las Cruces, Chile
| | - Steven D Gaines
- Bren School of Environmental Science and Management, University of CaliforniaSanta Barbara, California, 93106
| | - Giacomo Bernardi
- Department of Ecology and Evolutionary Biology, University of California Santa CruzSanta Cruz, California, 95076
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16
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Bernardi G. Speciation in fishes. Mol Ecol 2013; 22:5487-502. [PMID: 24118417 DOI: 10.1111/mec.12494] [Citation(s) in RCA: 51] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2013] [Revised: 08/08/2013] [Accepted: 08/14/2013] [Indexed: 12/27/2022]
Abstract
The field of speciation has seen much renewed interest in the past few years, with theoretical and empirical advances that have moved it from a descriptive field to a predictive and testable one. The goal of this review is to provide a general background on research on speciation as it pertains to fishes. Three major components to the question are first discussed: the spatial, ecological and sexual factors that influence speciation mechanisms. We then move to the latest developments in the field of speciation genomics. Affordable and rapidly available, massively parallel sequencing data allow speciation studies to converge into a single comprehensive line of investigation, where the focus has shifted to the search for speciation genes and genomic islands of speciation. We argue that fish present a very diverse array of scenarios, making them an ideal model to study speciation processes.
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Affiliation(s)
- Giacomo Bernardi
- Department of Ecology and Evolutionary Biology, University of California Santa Cruz, 100 Shaffer Road, Santa Cruz, CA, 95076, USA
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17
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Sogabe A, Takagi M. Population genetic structure of the messmate pipefish Corythoichthys haematopterus in the northwest pacific: evidence for a cryptic species. SPRINGERPLUS 2013; 2:408. [PMID: 24024095 PMCID: PMC3765599 DOI: 10.1186/2193-1801-2-408] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/19/2013] [Accepted: 08/23/2013] [Indexed: 11/16/2022]
Abstract
The population genetic structure of the messmate pipefish, Corythoichthys haematopterus, in the northwest Pacific was investigated based on the partial mitochondrial DNA cytochrome b (589 bp) and 16S rRNA (528 bp) region sequences of 108 individuals collected from six sites along the coast of the Japanese archipelago and one site on Mactan Island, the Philippines. A total of 60 and 28 haplotypes were obtained from the cytochrome b and 16S rRNA regions, respectively. Two genetically distinct lineages were detected: lineage A and B, which are separated by mean pairwise genetic distances of 23.3 and 14.1% in the partial cytochrome b and 16S rRNA genes, respectively. Such a huge genetic divergence between lineages, which is comparable to or even higher than the interspecific level, and the difference in their geographical distributions and habitat preferences suggests that they are distinct species, although there is no marked difference in their morphology. Haplotype network and gene and nucleotide diversity statistics indicate that the two lineages have different biogeographic histories: lineage A experienced rapid population expansion after a population bottleneck whereas lineage B has a long evolutionary history in a large stable population. In contrast, the levels of genetic variation among populations are relatively low in both lineages, probably because of frequent gene flow among populations resulting from the dispersal of pelagic larvae by the Kuroshio Current. These results indicate that past climatic events and contemporary oceanographic features have played a major role in establishing the population genetic structure of C. haematopterus.
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Affiliation(s)
- Atsushi Sogabe
- Graduate School of Biosphere Science, Hiroshima University, 1-4-4 Kagamiyama, Higashi-Hiroshima, 739-8528 Japan ; Center for Marine Biology, Asamushi, Tohoku University, 9 Sakamoto Asamushi, Aomori, 039-3501 Japan
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HOLLEMAN WOUTER, VON DER HEYDEN SOPHIE, ZSILAVECZ GUIDO. Delineating the fishes of the Clinus superciliosus species complex in southern African waters (Blennioidei: Clinidae: Clinini), with the validation of Clinus arborescens Gilchrist & Thompson, 1908 and Clinus ornatus Gilchrist & Thompson, 1908, and with de. Zool J Linn Soc 2012. [DOI: 10.1111/j.1096-3642.2012.00865.x] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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19
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Cryptic speciation in the mesopelagic environment: Molecular phylogenetics of the lanternfish genus Benthosema. Mar Genomics 2012; 7:7-10. [DOI: 10.1016/j.margen.2012.05.001] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2012] [Revised: 05/08/2012] [Accepted: 05/19/2012] [Indexed: 11/21/2022]
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