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Ravn JL, Ristinmaa AS, Coleman T, Larsbrink J, Geijer C. Yeasts Have Evolved Divergent Enzyme Strategies To Deconstruct and Metabolize Xylan. Microbiol Spectr 2023; 11:e0024523. [PMID: 37098941 PMCID: PMC10269524 DOI: 10.1128/spectrum.00245-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2023] [Accepted: 04/08/2023] [Indexed: 04/27/2023] Open
Abstract
Together with bacteria and filamentous fungi, yeasts actively take part in the global carbon cycle. Over 100 yeast species have been shown to grow on the major plant polysaccharide xylan, which requires an arsenal of carbohydrate active enzymes. However, which enzymatic strategies yeasts use to deconstruct xylan and what specific biological roles they play in its conversion remain unclear. In fact, genome analyses reveal that many xylan-metabolizing yeasts lack expected xylanolytic enzymes. Guided by bioinformatics, we have here selected three xylan-metabolizing ascomycetous yeasts for in-depth characterization of growth behavior and xylanolytic enzymes. The savanna soil yeast Blastobotrys mokoenaii displays superior growth on xylan thanks to an efficient secreted glycoside hydrolase family 11 (GH11) xylanase; solving its crystal structure revealed a high similarity to xylanases from filamentous fungi. The termite gut-associated Scheffersomyces lignosus, in contrast grows more slowly, and its xylanase activity was found to be mainly cell surface-associated. The wood-isolated Wickerhamomyces canadensis, surprisingly, could not utilize xylan as the sole carbon source without the addition of xylooligosaccharides or exogenous xylanases or even co-culturing with B. mokoenaii, suggesting that W. canadensis relies on initial xylan hydrolysis by neighboring cells. Furthermore, our characterization of a novel W. canadensis GH5 subfamily 49 (GH5_49) xylanase represents the first demonstrated activity in this subfamily. Our collective results provide new information on the variable xylanolytic systems evolved by yeasts and their potential roles in natural carbohydrate conversion. IMPORTANCE Microbes that take part in the degradation of the polysaccharide xylan, the major hemicellulose component in plant biomass, are equipped with specialized enzyme machineries to hydrolyze the polymer into monosaccharides for further metabolism. However, despite being found in virtually every habitat, little is known of how yeasts break down and metabolize xylan and what biological role they may play in its turnover in nature. Here, we have explored the enzymatic xylan deconstruction strategies of three underexplored yeasts from diverse environments, Blastobotrys mokoenaii from soil, Scheffersomyces lignosus from insect guts, and Wickerhamomyces canadensis from trees, and we show that each species has a distinct behavior regarding xylan conversion. These findings may be of high relevance for future design and development of microbial cell factories and biorefineries utilizing renewable plant biomass.
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Affiliation(s)
- Jonas L. Ravn
- Department of Life Sciences, Chalmers University of Technology, Gothenburg, Sweden
| | | | - Tom Coleman
- Department of Life Sciences, Chalmers University of Technology, Gothenburg, Sweden
| | - Johan Larsbrink
- Department of Life Sciences, Chalmers University of Technology, Gothenburg, Sweden
- Wallenberg Wood Science Center, Chalmers University of Technology, Gothenburg, Sweden
| | - Cecilia Geijer
- Department of Life Sciences, Chalmers University of Technology, Gothenburg, Sweden
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Šuchová K, Fehér C, Ravn JL, Bedő S, Biely P, Geijer C. Cellulose- and xylan-degrading yeasts: Enzymes, applications and biotechnological potential. Biotechnol Adv 2022; 59:107981. [DOI: 10.1016/j.biotechadv.2022.107981] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2022] [Revised: 05/08/2022] [Accepted: 05/10/2022] [Indexed: 01/23/2023]
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3
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Sun H, Peng M. Improvement of glucoamylase production for raw-starch digestion in Aspergillus niger F-01 by maltose stearic acid ester. Biotechnol Lett 2017; 39:561-566. [DOI: 10.1007/s10529-016-2277-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2016] [Accepted: 12/20/2016] [Indexed: 10/20/2022]
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Prakash A, Bateman A. Domain atrophy creates rare cases of functional partial protein domains. Genome Biol 2015; 16:88. [PMID: 25924720 PMCID: PMC4432964 DOI: 10.1186/s13059-015-0655-8] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2014] [Accepted: 04/15/2015] [Indexed: 01/12/2023] Open
Abstract
BACKGROUND Protein domains display a range of structural diversity, with numerous additions and deletions of secondary structural elements between related domains. We have observed a small number of cases of surprising large-scale deletions of core elements of structural domains. We propose a new concept called domain atrophy, where protein domains lose a significant number of core structural elements. RESULTS Here, we implement a new pipeline to systematically identify new cases of domain atrophy across all known protein sequences. The output of this pipeline was carefully checked by hand, which filtered out partial domain instances that were unlikely to represent true domain atrophy due to misannotations or un-annotated sequence fragments. We identify 75 cases of domain atrophy, of which eight cases are found in a three-dimensional protein structure and 67 cases have been inferred based on mapping to a known homologous structure. Domains with structural variations include ancient folds such as the TIM-barrel and Rossmann folds. Most of these domains are observed to show structural loss that does not affect their functional sites. CONCLUSION Our analysis has significantly increased the known cases of domain atrophy. We discuss specific instances of domain atrophy and see that there has often been a compensatory mechanism that helps to maintain the stability of the partial domain. Our study indicates that although domain atrophy is an extremely rare phenomenon, protein domains under certain circumstances can tolerate extreme mutations giving rise to partial, but functional, domains.
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Affiliation(s)
- Ananth Prakash
- European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, CB10 1SD, UK.
| | - Alex Bateman
- European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, CB10 1SD, UK.
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Construction of a new recombinant protein expression system in the basidiomycetous yeast Cryptococcus sp. strain S-2 and enhancement of the production of a cutinase-like enzyme. Appl Microbiol Biotechnol 2011; 93:1627-36. [DOI: 10.1007/s00253-011-3680-x] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2011] [Revised: 09/30/2011] [Accepted: 10/27/2011] [Indexed: 11/26/2022]
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Brienzo M, Monte JR, Milagres AMF. Induction of cellulase and hemicellulase activities of Thermoascus aurantiacus by xylan hydrolyzed products. World J Microbiol Biotechnol 2011; 28:113-9. [PMID: 22806786 DOI: 10.1007/s11274-011-0798-z] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2010] [Accepted: 05/19/2011] [Indexed: 11/24/2022]
Abstract
Thermoascus aurantiacus is able to secrete most of the hemicellulolytic and cellulolytic enzymes. To establish the xylanase inducers of T. aurantiacus, the mycelia were first grown on glucose up until the end of the exponential growth phase, followed by washing and re-suspension in a basal medium without a carbon source. Pre-weighed amounts of xylose (final concentration of 3.5 mg/ml), xylobiose (7 mg/ml) and hydrolyzed xylan from sugarcane bagasse (HXSB) which contained xylose, xylobiose and xylotriose (6.8 mg/ml) were evaluated as inducers of xylanase. It was observed that xylose did not suppress enzyme induction of T. aurantiacus when used in low concentrations, regardless of whether it was inoculated with xylobiose. Xylobiose promoted fast enzyme production stopping after 10 h, even at a low consumption rate of the carbon source; therefore xylobiose appears to be the natural inducer of xylanase. In HXSB only a negligible xylanase activity was determined. Xylose present in HXSB was consumed within the first 10 h while xylobiose was partially hydrolyzed at a slow rate. The profile of α-arabinofuranosidase induction was very similar in media induced with xylobiose or HXSB, but induction with xylose showed some positive effects as well. The production profile for the xylanase was accompanied by low levels of cellulolytic activity. In comparison, growth in HXSB resulted in different profiles of both xylanase and cellulase production, excluding the possibility of xylanase acting as endoglucanases.
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Affiliation(s)
- M Brienzo
- Department of Process Engineering, University of Stellenbosch, Private Box X1, Matielend, Stellenbosch, 7602, South Africa.
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Application of maltitol to improve production of raw starch digesting glucoamylase by Aspergillus niger F-08. World J Microbiol Biotechnol 2008. [DOI: 10.1007/s11274-008-9785-4] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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9
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Miyazaki K, Hirase T, Kojima Y, Flint HJ. Medium- to large-sized xylo-oligosaccharides are responsible for xylanase induction in Prevotella bryantii B14. MICROBIOLOGY-SGM 2006; 151:4121-4125. [PMID: 16339957 DOI: 10.1099/mic.0.28270-0] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Experiments were done to define the nature of the xylan-derived induction signal for xylanase activity, and evaluate which xylanase genes among the three known ones (xynA, xynB and xynC) are induced by the presence of xylan in Prevotella bryantii B(1)4. During the later stages of exponential growth on glucose, addition of 0.05 % water-soluble xylan (WS-X) stimulated xylanase formation within 30 min. Xylose, xylobiose, xylotriose, xylotetraose, xylopentaose, arabinose and glucuronic acid all failed to induce the xylanase activity. An acid-ethanol-soluble fraction of WS-X (approximate degree of polymerization 30) enhanced the activity significantly, whereas the acid-ethanol-insoluble fraction had no effect, unless first digested by the cloned P. bryantii XynC xylanase. These results indicate that medium- to large-sized xylo-oligosaccharides are responsible for induction. The transcription of all three known xylanase genes from P. bryantii was upregulated coordinately by addition of WS-X. There have been relatively few investigations into the regulation of xylanase activity in bacteria, and it appears to be unique that medium- to large-sized xylo-oligosaccharides are responsible for induction.
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Affiliation(s)
- Kohji Miyazaki
- Laboratory of Animal Science, Kyoto Prefectural University, Shimogamo, Kyoto 606-8522, Japan
| | - Tatsuaki Hirase
- Laboratory of Animal Science, Kyoto Prefectural University, Shimogamo, Kyoto 606-8522, Japan
| | - Yoichi Kojima
- Laboratory of Animal Science, Kyoto Prefectural University, Shimogamo, Kyoto 606-8522, Japan
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Hidalgo-Lara ME, Farrés GSA, Montes-Horcasitas MDC. β-Methyl-xyloside: positive effect on xylanase induction in Cellulomonas flavigena. J Ind Microbiol Biotechnol 2005; 32:345-8. [PMID: 15986227 DOI: 10.1007/s10295-005-0258-6] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2004] [Accepted: 05/25/2005] [Indexed: 10/25/2022]
Abstract
Synthesis of extracellular xylanase in Cellulomonas flavigena is induced in the presence of xylan and sugarcane bagasse as substrates. The essential factors for efficient production of xylanase are the appropriate medium composition and an inducing substrate. The increase in xylanase production levels in C. flavigena were tested with a number of carbon sources and different culture conditions. Xylose, arabinose, glycerol and glucose did not induce xylanase production in this microorganism. beta-Methyl-xyloside (beta-mx), a structural analog of xylobiose, also did not induce xylanase when used as the sole carbon source, but when xylan or sugar cane bagasse was supplemented with beta-mx, extracellular xylanase production increased by 25 or 46%, respectively. The response of C. flavigena to xylan plus beta-mx was accompanied by a significant accumulation of reducing sugar, an effect not observed with the combination sugarcane bagasse plus beta-mx as substrate. To our knowledge, this is the first report on the effect of beta-mx on the induction of xylanase in C. flavigena.
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Affiliation(s)
- Marìa Eugenia Hidalgo-Lara
- Departamento de Biotecnología y Bioingeniería, Centro de Investigación y de Estudios Avanzados, Ave. IPN 2508, México D.F.C.P. 07360, Mexico
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11
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Rimek D, Haase G, Lück A, Casper J, Podbielski A. First report of a case of meningitis caused by Cryptococcus adeliensis in a patient with acute myeloid leukemia. J Clin Microbiol 2004; 42:481-3. [PMID: 14715811 PMCID: PMC321734 DOI: 10.1128/jcm.42.1.481-483.2004] [Citation(s) in RCA: 42] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2003] [Revised: 09/20/2003] [Accepted: 10/12/2003] [Indexed: 11/20/2022] Open
Abstract
Cryptococcus adeliensis is a recently described new fungal species which has been isolated from decaying algae in Terre Adelie, Antarctica. We report the first known case of meningitis caused by C. adeliensis in a patient with acute myeloid leukemia undergoing allogeneic peripheral blood stem cell transplantation.
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Affiliation(s)
- Dagmar Rimek
- Department of Medical Microbiology and Hospital Hygiene, University of Rostock, Rostock, Germany.
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12
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Basaran P, Hang YD, Basaran N, Worobo RW. Cloning and heterologous expression of xylanase from Pichia stipitis in Escherichia coli. J Appl Microbiol 2001; 90:248-55. [PMID: 11168728 DOI: 10.1046/j.1365-2672.2001.01237.x] [Citation(s) in RCA: 21] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
AIMS The main goal of this study was to characterize the xylanase (xynA) gene from Pichia stipitis NRRL Y-11543. METHODS AND RESULTS The xylanase gene was cloned into pUC19 in Escherichia coli DH5alphaF' and selected by growth on RBB-xylan. All functional clones contained a recombinant plasmid with an insert of 2.4 kbp, as determined by restriction mapping. The nucleotide sequence of the P. stipitis xylanase gene consisted of 1146 bp and encoded a protein of 381 amino acids with a molecular weight of 43 649 Da. The sequence contained a putative 20-amino acid N-terminal signal sequence and four N-linked glycosylation sites. The Km values for non-glycosylated and glycosylated xylanases were 1.4 mg ml-1 and 4.2 mg ml-1, respectively, and Vmax values were 0.8 and 0.082 micromol min-1 mg-1 protein, respectively. CONCLUSION Xylanase, a rarely found enzyme in yeast species, has been characterized in detail. SIGNIFICANCE AND IMPACT OF THE STUDY The results of this study can be used to develop better xylanase-utilizing yeast strains.
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Affiliation(s)
- P Basaran
- Adnan Menderes University, Gazi Bulvari, Aydin, Turkey
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The β-xylosidase production by yeastCryptococcus podzolicus. RUSSIAN JOURNAL OF BIOORGANIC CHEMISTRY 2000. [DOI: 10.1007/bf02758629] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Abstract
Hemicellulolytic microorganisms play a significant role in nature by recycling hemicellulose, one of the main components of plant polysaccharides. Xylanases (EC 3.2.1.8) catalyze the hydrolysis of xylan, the major constituent of hemicellulose. The use of these enzymes could greatly improve the overall economics of processing lignocellulosic materials for the generation of liquid fuels and chemicals. Recently cellulase-free xylanases have received great attention in the development of environmentally friendly technologies in the paper and pulp industry. In microorganisms that produce xylanases low molecular mass fragments of xylan and their positional isomers play a key role in regulating its biosynthesis. Xylanase and cellulase production appear to be regulated separately, although the pleiotropy of mutations, which causes the elimination of both genes, suggests some linkage in the synthesis of the two enzymes. Xylanases are found in a cornucopia of organisms and the genes encoding them have been cloned in homologous and heterologous hosts with the objectives of overproducing the enzyme and altering its properties to suit commercial applications. Sequence analyses of xylanases have revealed distinct catalytic and cellulose binding domains, with a separate non-catalytic domain that has been reported to confer enhanced thermostability in some xylanases. Analyses of three-dimensional structures and the properties of mutants have revealed the involvement of specific tyrosine and tryptophan residues in the substrate binding site and of glutamate and aspartate residues in the catalytic mechanism. Many lines of evidence suggest that xylanases operate via a double displacement mechanism in which the anomeric configuration is retained, although some of the enzymes catalyze single displacement reactions with inversion of configuration. Based on a dendrogram obtained from amino acid sequence similarities the evolutionary relationship between xylanases is assessed. In addition the properties of xylanases from extremophilic organisms have been evaluated in terms of biotechnological applications.
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Affiliation(s)
- N Kulkarni
- Division of Biochemical Sciences, National Chemical Laboratory, Pune, India
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Sachslehner A, Nidetzky B, Kulbe KD, Haltrich D. Induction of Mannanase, Xylanase, and Endoglucanase Activities in Sclerotium rolfsii. Appl Environ Microbiol 1998; 64:594-600. [PMID: 16349502 PMCID: PMC106088 DOI: 10.1128/aem.64.2.594-600.1998] [Citation(s) in RCA: 54] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/1997] [Accepted: 11/22/1997] [Indexed: 11/20/2022] Open
Abstract
Induction of mannanase, xylanase, and cellulase (endoglucanase) synthesis in the plant-pathogenic basidiomycete Sclerotium rolfsii was studied by incubating noninduced, resting mycelia with a number of mono-, oligo-, and polysaccharides. The simultaneous formation of these three endoglycanases could be provoked by several polysaccharides structurally resembling the carbohydrate constituents of lignocellulose (e.g., mannan and cellulose), by various disaccharide catabolites of these lignocellulose constituents (e.g., cellobiose, mannobiose, and xylobiose), or by structurally related disaccharides (e.g., lactose, sophorose, and galactosyl-beta-1,4-mannose), as well as by l-sorbose. Synthesis of mannanase, xylanase, and endoglucanase always occurred concomitantly and could not be separated by selecting an appropriate inducer. Various structurally different inducing carbohydrates promoted the excretion of the same multiple isoforms of endoglycanases, as judged from the similar banding patterns obtained in zymogram analyses of enzyme preparations obtained in response to these different inducers and resolved by analytical isoelectric focusing. Whereas enhanced xylanase and endoglucanase formation is strictly dependent on the presence of suitable inducers, increased levels of mannanase are excreted by S. rolfsii even under noninducing, derepressed conditions, as shown in growth experiments with glucose as the substrate. Significant mannanase formation commenced only when glucose was exhausted from the medium. Under these conditions, only very low, presumably constitutive levels of xylanase and endoglucanase were formed. Although the induction of the three endoglycanases is very closely related in S. rolfsii, it was concluded that there is no common, coordinated regulatory mechanism that controls the synthesis of mannanase, xylanase, and endoglucanase.
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Affiliation(s)
- A Sachslehner
- Division of Biochemical Engineering, Institute of Food Technology, University of Agricultural Sciences Vienna (Universität für Bodenkultur BOKU), A-1190 Vienna, Austria
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Simāo RCG, Souza CGM, Peralta RM. The use of methyl β-D-xyloside as a substrate for xylanase production by Aspergillus tamarii. Can J Microbiol 1997. [DOI: 10.1139/m97-008] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Aspergillus tamarii was able to produce biomass in media containing β-methyl D-xyloside, a synthetic analogue of xylobiose, as the only carbon source. β-Methyl D-xyloside was a more effective inducer than xylan at the same concentration for xylanase and β-xylosidase activities. The delayed consumption of β-methyl D-xyloside by A. tamarii cells suggests the requirement of a specific inducible transport system and a slow metabolic process. The synthesis of this transport system was probably repressed by the presence of easily metabolizable sugars. β-Methyl D-xyloside was hydrolyzed to xylose by an intracellular β-xylosidase.Key words: xyanolytic microorganisms, xylanase, β-xylosidase, Aspergillus tamarii.
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Biosynthesis of xylanolytic and xylan-debranching enzymes in Melanocarpus albomyces IIS 68. ACTA ACUST UNITED AC 1997. [DOI: 10.1016/s0922-338x(97)80141-9] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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18
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Induction of xylanase and β-xylosidase in Cellulomonas flavigena growing on different carbon sources. Appl Microbiol Biotechnol 1996. [DOI: 10.1007/bf00166237] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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19
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Purkarthofer H, Steiner W. Induction of endo-β-xylanase in the fungus Thermomyces lanuginosus. Enzyme Microb Technol 1995. [DOI: 10.1016/0141-0229(94)00039-t] [Citation(s) in RCA: 21] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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20
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Milagres AM, Prade RA. Production of xylanases from Penicillium janthinellum and its use in the recovery of cellulosic textile fibers. Enzyme Microb Technol 1994. [DOI: 10.1016/0141-0229(94)90130-9] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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21
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de Graaff LH, van den Broeck HC, van Ooijen AJ, Visser J. Regulation of the xylanase-encoding xlnA gene of Aspergillus tubigensis. Mol Microbiol 1994; 12:479-90. [PMID: 8065265 DOI: 10.1111/j.1365-2958.1994.tb01036.x] [Citation(s) in RCA: 88] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
A gene encoding an endo-1,4-beta-xylanase from Aspergillus tubigensis was cloned by oligonucleotide screening using oligonucleotides derived from amino acid sequence data obtained from the purified protein. The isolated gene was functional as it could be expressed in the very closely related fungus Aspergillus niger. The xylanase encoded by this gene is synthesized as a protein of 211 amino acids. After cleavage of the presumed prepropeptide this results in a mature protein of 184 amino acids with a molecular weight of 19 kDa and an isoelectric point of 3.6. The regulatory region of the xlnA gene was studied with respect to the response to xylan induction and carbon catabolite repression. By deletion analysis of the 5' upstream region of the gene a 158 bp region involved in the xylan specific induction was identified. To study this regulatory element a reporter system for transcriptional activating sequences was developed that is based on the A. niger glucose oxidase-encoding gene. From the results with this reporter system it is concluded that this 158 bp fragment not only contains the information required for induction of transcription but that it also plays a role in carbon catabolite repression of the xlnA gene. The region directly upstream of this fragment contains four potential CREA target sites; deletion of this region leads to an increase in the level of transcription. These results suggest that carbon catabolite repression of the xlnA gene is controlled at two levels, directly by repression of xlnA gene transcription and indirectly by repression of the expression of a transcriptional activator. This type of mechanism would be similar to the double lock mechanism for the regulation of gene expression of alcA in Aspergillus nidulans. The reporter system was also used to study the regulation of expression via the functions located on this fragment in A. niger and in A. nidulans. Essentially the same pattern of regulation was found in both of these hosts. Therefore, regulation of xylanase gene expression is basically conserved in all three aspergilli.
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Affiliation(s)
- L H de Graaff
- Section of Molecular Genetics of Industrial Microorganisms, Agricultural University, Wageningen, The Netherlands
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22
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Ghosh M, Nanda G. Physiological studies on xylose induction and glucose repression of xylanolytic enzymes inAspergillus sydowiiMG49. FEMS Microbiol Lett 1994. [DOI: 10.1111/j.1574-6968.1994.tb06757.x] [Citation(s) in RCA: 25] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022] Open
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Haltrich D, Steiner W. Formation of xylanase by Schizophyllum commune: Effect of medium components. Enzyme Microb Technol 1994. [DOI: 10.1016/0141-0229(94)90047-7] [Citation(s) in RCA: 24] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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24
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Gomes D, Gomes J, Steiner W. Factors influencing the induction of endo-xylanase by Thermoascus aurantiacus. J Biotechnol 1994. [DOI: 10.1016/0168-1656(94)90101-5] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
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25
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26
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�zcan S, K�tter P, Ciciary M. Xylan-hydrolysing enzymes of the yeast Pichia stipitis. Appl Microbiol Biotechnol 1991. [DOI: 10.1007/bf00164418] [Citation(s) in RCA: 27] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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Royer JC, Nakas JP. Interrelationship of Xylanase Induction and Cellulase Induction of Trichoderma longibrachiatum. Appl Environ Microbiol 1990; 56:2535-2539. [PMID: 16348262 PMCID: PMC184761 DOI: 10.1128/aem.56.8.2535-2539.1990] [Citation(s) in RCA: 44] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Xylose oligomers rapidly induced xylanase activity of Trichoderma longibrachiatum, whereas induction was delayed in the presence of glucose. Cellobiose, cellopentaose, and xylobiose did not induce detectable levels of cellulase activity. However, mixtures of xylobiose with cellobiose or cellopentaose rapidly induced cellulase activity. In addition, mixtures of xylobiose with cellopentaose or cellobiose induced xylanase activity more effectively than xylobiose alone. Both xylanase and cellulase activity were detected after a lag period in the presence of lactose.
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Affiliation(s)
- John C Royer
- College of Environmental Science and Forestry, State University of New York, Syracuse, New York 13210
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Comparative fermentability of enzymatic and acid hydrolysates of steam-pretreated aspenwood hemicellulose by Pichia stipitis CBS 5776. Appl Microbiol Biotechnol 1989. [DOI: 10.1007/bf00270801] [Citation(s) in RCA: 52] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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30
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Morosoli R, Durand S, Boucher F. Stimulation of xylanase synthesis inCryptococcus albidusby cyclic AMP. FEMS Microbiol Lett 1989. [DOI: 10.1111/j.1574-6968.1989.tb03220.x] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022] Open
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31
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Biswas SR, Mishra AK, Nanda G. Induction of xylanase inAspergillus ochraceus. Folia Microbiol (Praha) 1988. [DOI: 10.1007/bf02925844] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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32
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Biswas SR, Mishra AK, Nanda G. Xylanase and ?-xylosidase production byAspergillus ochraceus during growth on lignocelluloses. Biotechnol Bioeng 1988; 31:613-6. [DOI: 10.1002/bit.260310614] [Citation(s) in RCA: 25] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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33
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Morosoli R, Durand S, Letendre ED. Induction of xylanase by β-methylxyloside inCryptococcus albidus. FEMS Microbiol Lett 1987. [DOI: 10.1111/j.1574-6968.1987.tb02553.x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022] Open
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34
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Leathers TD, Detroy RW, Bothast RJ. Induction and glucose repression of xylanase from a color variant strain ofAureobasidum pullulans. Biotechnol Lett 1986. [DOI: 10.1007/bf01078647] [Citation(s) in RCA: 40] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Leathers TD. Color Variants of
Aureobasidium pullulans
Overproduce Xylanase with Extremely High Specific Activity. Appl Environ Microbiol 1986; 52:1026-30. [PMID: 16347200 PMCID: PMC239168 DOI: 10.1128/aem.52.5.1026-1030.1986] [Citation(s) in RCA: 88] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Xylanase activity from naturally occurring color variants of
Aureobasidium pullulans
was associated with extracellular monomeric proteins of 20 to 21 kilodaltons. Xylanase represented nearly half the total extracellular protein, with a yield of up to 0.3 g of xylanase per liter. The specific activity of partially purified xylanase exceeded 2,000 IU/mg. Xylanase from typically pigmented strains appeared similar to that from color variants with respect to molecular weight, pH and temperature optima, and specific activity of purified (but not crude) enzyme. However, xylanase from typical strains made up only about 1.0% of total extracellular protein. Xylanase from strains of
Cryptococcus albidus
was associated with abundant proteins of about 43 kilodaltons and showed much lower specific activity.
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Affiliation(s)
- T D Leathers
- Northern Regional Research Center, Agricultural Research Service, U.S. Department of Agriculture, Peoria, Illinois 61604
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36
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Hkmová M, Biely P, Vršanská M. Production of Cellulase byTrichoderma reesei on Waste Cellophane. Folia Microbiol (Praha) 1985. [DOI: 10.1007/bf02927610] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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37
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Induction of d-xylan-degrading enzymes in Trichoderma lignorum by nonmetabolizable inducers. A synthesis of 4-thioxylobiose. Carbohydr Res 1985. [DOI: 10.1016/0008-6215(85)90013-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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38
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Biely P, Petráková E. Novel inducers of the xylan-degrading enzyme system of Cryptococcus albidus. J Bacteriol 1984; 160:408-12. [PMID: 6434523 PMCID: PMC214733 DOI: 10.1128/jb.160.1.408-412.1984] [Citation(s) in RCA: 27] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023] Open
Abstract
A series of compounds structurally related to xylan and 1,4-beta-xylobiose were tested as inducers of the xylan-degrading enzyme system of Cryptococcus albidus. Washed, glucose-grown cells were incubated with alpha- and beta-linked xylobioses, 4-O-beta-D-xylopyranosyl-L-arabinopyranose, 3-O-beta-D-xylopyranosyl-xylobiose, 6-O-beta-D-xylopyranosyl-cellobiose, cellobiose, and methyl beta-D-xylopyranoside. All alpha-xylobioses and cellobiose were inactive as inducers of the xylan-degrading enzyme system. Other compounds served as inducers of varying efficiency, depending on their concentration in the induction medium and the time of incubation of cells. The most rapid response of the cells, i.e., the shortest induction period of beta-xyloside permease, beta-xylosidase (EC 3.2.1.37), and beta-xylanase (EC 3.2.1.8), was observed with 1,4-beta-xylobiose, which was the most efficient inducer at low concentrations (0.1 to 0.2 mM). At higher concentrations (2 to 10 mM) and after long incubations, the highest enzyme yields were obtained with 1,2-beta-xylobiose. The results represent a new example of efficient induction of polysaccharide-degrading enzyme systems by positional isomers of dimers derived from the polysaccharide.
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39
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Microbial Biomass from Renewables: A Second Review of Alternatives. ACTA ACUST UNITED AC 1984. [DOI: 10.1016/b978-0-12-040307-3.50013-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register]
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40
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Biely P, Vrsanská M. Synthesis and hydrolysis of 1,3-beta-xylosidic linkages by endo-1,4-beta-xylanase of Cryptococcus albidus. EUROPEAN JOURNAL OF BIOCHEMISTRY 1983; 129:645-51. [PMID: 6825681 DOI: 10.1111/j.1432-1033.1983.tb07098.x] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Abstract
Purified extracellular endo-1,4-beta-xylanase (EC 3.2.1.8) of the yeast Cryptococcus albidus was found to catalyze not only the known 1,4-beta-transfer, but an alternative transglycosylation reaction leading to the formation of 1,3-beta-glycosidic linkages. From a mixture of products of beta-xylanase degradation of phenyl beta-D-xylopyranoside three xylooligosaccharide fractions, differing chromatographically from the 1,4-beta-linked products, were isolated by preparative paper chromatography. Their structure was elucidated by mass spectrometry, 13C-NMR spectroscopy and enzymic hydrolysis by beta-xylanase and beta-xylosidase. The isomeric xylotriose was identified as 3-O-beta-D-xylopyranosyl-4-O-beta-D-xylopyranosyl-D-xylose. The fraction of isomeric tetrasaccharides was found to be represented mainly by 4-O-beta-D-xylopyranosyl-3-O-beta-D-xylopyranosyl-4-O-beta-D-xylopyranosyl- D-xylose. The xylooligosaccharides containing one 1,3-beta-linkage were also produced on the enzyme treatment of 1,4-beta-xylotriose and 1,4-beta-xylan. When treated with the enzyme responsible for their synthesis, the isomeric xylooligosaccharides were hydrolyzed at the 1,3-beta-linkage, despite the fact the enzyme does not attack 1,3-beta-xylan. The results are interpreted in the relation to the characterized four-subsite substrate-binding site of the enzyme.
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41
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Peciarová A, Biely P. Beta-Xylosidases and a nonspecific wall-bound beta-glucosidase of the yeast Cryptococcus albidus. BIOCHIMICA ET BIOPHYSICA ACTA 1982; 716:391-9. [PMID: 6810950 DOI: 10.1016/0304-4165(82)90032-0] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Abstract
Cryptococcus albidus grown on wood xylans possesses a soluble intracellular beta-xylosidase (EC 3.2.1.37) as an additional constituent of the xylan-degrading enzyme system of this yeast. The enzyme attacks linear 1,4-beta-xylooligosaccharides in an exo-fashion, liberating xylose from the non-reducing ends. The activity of the enzyme increases in the cells during growth on xylan and incubation with xylobiose or methyl beta-D-xylopyranoside which are the best inducers of extracellular beta-xylanase (EC 3.2.1.8). Various alkyl-,alkyl-1-thio- and aryl beta-D-xylopyranosides were excellent inducers of a different beta-xylosidase of Cryptococcus albidus. This enzyme is localized outside the plasma membrane and is principally associated with cell walls. Unlike the soluble intracellular beta-xylosidase, the wall-bound enzyme does not hydrolyze xylooligosaccharides. Evidence has been obtained that beta-xylosidase activity in the cell walls is not due to the presence of a specific aryl beta-xylosidase, but is exhibited by a nonspecific beta-glucosidase (EC 3.2.1.21) inducible by beta-D-xylopyranosides. The ratio of beta-glucosidase and beta-xylosidase activity in the cells and isolated cell walls from yeast induced by various beta-xylopyranosides and beta-glucopyranosides was very similar. Both wall-bound activities were inhibited in a similar pattern by inhibitors of beta-glucosidases, 1,5-gluconolactone and nojirimycin. This bifunctional enzyme does not bear any relationship to the utilization of xylans in Cryptococcus albidus.
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42
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St�ttgen E, Sahm H. Purification and properties of endo-1,4-?-xylanase from Trichosporon cutaneum. ACTA ACUST UNITED AC 1982. [DOI: 10.1007/bf00499513] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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43
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Rho D, Desrochers M, Jurasek L, Driguez H, Defaye J. Induction of cellulose in Schizophyllum commune: thiocellobiose as a new inducer. J Bacteriol 1982; 149:47-53. [PMID: 6798027 PMCID: PMC216590 DOI: 10.1128/jb.149.1.47-53.1982] [Citation(s) in RCA: 49] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023] Open
Abstract
Several mono-, di, tetra-, and polysaccharides were screened for their ability to induced cellulase production by the tetrapolar hymenomycete Schizophyllum commune. Out of 21 carbohydrates screened, 4 (thiocellobiose, carboxymethylcellulose, cellobiose, and xylan) induced all three enzymes tested (carboxymethylcellulase, beta-glucosidase, and xylanase). The inducing effect increased with rising concentrations of the inducers up to a certain value, beyond which there was either a leveling off or a decrease of the enzymatic activities. The most powerful inducer, thiocellobiose, showed the highest activity at 0.5 mM. Cellobiose, carboxymethylcellulose, and xylan showed their highest activities at 1 mM and 1%, respectively. Surprisingly, sophorose did not enhance enzyme production. The enzymatic activities were monitored over a period of 24 h. Thiocelloboise elicited a response immediately after incubation, but with all other inducers there was a latency period before their effect could be measured. High-performance liquid chromatography showed no hydrolysis of thiocellobiose when incubated in the presence of S. commune extracellular enzymes.
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Biely P, Vrsanská M, Krátký Z. Mechanisms of substrate digestion by endo-1,4-beta-xylanase of Cryptococcus albidus. Lysozyme-type pattern of action. EUROPEAN JOURNAL OF BIOCHEMISTRY 1981; 119:565-71. [PMID: 7308202 DOI: 10.1111/j.1432-1033.1981.tb05645.x] [Citation(s) in RCA: 49] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Abstract
The action pattern and reaction mechanism of the endo-1,4-beta-xylanase of the yeast Cryptococcus albidus were investigated using reducing-end (1-3H)-labelled and uniformly 14C-labelled beta-1,4-xylooligosaccharides up to xylopentaose. The enzyme was found to catalyze degradation of oligosaccharides also by other pathways than a simple hydrolytic cleavage. Bond-cleavage frequency of xylotriose, xylotetraose and xylopentaose were found to be concentration dependent. At high substrate concentration reactions such as xylosyl, xylobiosyl and xylotriosyl transfer occur and result in the formation of products larger than the starting substrate. Xylose and xylobiose to significant extent enter the reaction pathways as glycosyl acceptors. None of the transglycosylic reactions observed with reducing-end-labelled substrates or acceptors were accompanied by a significant label redistribution from the reducing-end unit, suggesting that the enzyme-glycosyl intermediates effective in the transfer reactions can be formed from the non-reducing-end units of oligosaccharides. Evidence for the formation of a termomolecular shifted complex of beta-xylanase with xylotriose has also been obtained. All features of the degradation of oligosaccharides by beta-xylanase are consistent with the lysozyme-type reaction mechanism.
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Biely P, Vrsanská M, Krátký Z. Complex reaction pathway of aryl beta-xyloside degradation by beta-xylanase of Cryptococcus albidus. EUROPEAN JOURNAL OF BIOCHEMISTRY 1980; 112:375-81. [PMID: 7470239 DOI: 10.1111/j.1432-1033.1980.tb07215.x] [Citation(s) in RCA: 21] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Abstract
The extracellular endo-1,4-beta-xylanase of the yeast Cryptococcus albidus catalyzes degradation of aryl beta-xylosides by other reactions than simple hydrolytic cleavage. Liberation of phenol or p-nitrophenol from the corresponding beta-xylosides is accompanied by formation of xylose oligosaccharides and only small amounts of xylose. With the aid of phenyl beta-[U-14C]xyloside synthesized from [U-14C]xylose, it was established that the reaction followed a complex pattern with the rate of phenyl beta-xyloside digestion and appearance of various products varying markedly with time. The reaction involves multiple transglycosylic reaction leading first to phenyl glycosides of xylooligosaccharides, which are subsequently hydrolyzed mainly to xylobiose and xylotriose. At concentrations of phenyl beta-xyloside lower than 100 mM the reaction exhibited a significant lag phase, which was followed by period during which the rate of the degradation of the substrate could be determined. The rate showed a strong sigmoidal dependence on phenyl-beta-xyloside concentration. The lag phase could be eliminated and the initial rate accelerated by addition of xylose oligosaccharides, which are hydrolyzed by beta-xylanase. After disappearance of the added oligosaccharides, the reaction transitionally ceased and then resumed again at a rate comparable to the control without added oligosaccharides. It is proposed that beta-xylanase utilizes for degradation of phenyl beta-xyloside two reaction pathways differing in the nature of glycosyl donors.
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Krátký Z, Biely P. Inducible beta-xyloside permease as a constituent of the xylan-degrading enzyme system of the yeast Cryptococcus albidus. EUROPEAN JOURNAL OF BIOCHEMISTRY 1980; 112:367-73. [PMID: 6893962 DOI: 10.1111/j.1432-1033.1980.tb07214.x] [Citation(s) in RCA: 22] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Abstract
The yeast, Cryptococcus albidus, depending on whether it is grown on xylan or glucose, differs remarkably in the ability to take up inducers of extracellular endo-1,4-beta-xylanase synthesis. In washed, glucose-grown cells the initially low ability to take up xylobiose or methyl beta-D-xylopyranoside, increases during incubation with these compounds after a lag-phase shorter than the induction time of the extracellular beta-xylanase. Using of methyl beta-D-[U-14C]xylopyranoside as a very slowly metabolizable inducer of beta-xylanase it has been established that the increase of the rate of xylobiose or methyl xyloside uptake is due to induction of an active transport system for methyl beta-D-xyloside and beta-1,4-xylooligosaccharides. The system is called beta-xyloside permease. The permease activity of induced cells decreases in the absence of beta-xylanase inducers. The induction of permease as well as its inactivation (degradation) can be prevented with cycloheximide, thus both events appear to be dependent on de novo protein synthesis. In analogy with other active transport systems, beta-xyloside permease function can be effectively blocked by inhibitors of energy metabolism in the cells. The demonstrated example of induction of a permease, for inducers and products of hydrolysis of an extracellular polysaccharide hydrolase, points to a new feature of induction of extracellular enzymes in eucaryotic microorganisms.
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Biely P, Vrsanská M, Krátký Z. Xylan-degrading enzymes of the yeast Cryptococcus albidus. Identification and cellular localization. EUROPEAN JOURNAL OF BIOCHEMISTRY 1980; 108:313-21. [PMID: 6773762 DOI: 10.1111/j.1432-1033.1980.tb04725.x] [Citation(s) in RCA: 96] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Abstract
During growth on wood beta-1,4-xylans the yeast Cryptococcus albidus produced at least two enzymes which convert the polysaccharide to xylose catabolized by the cells. The enzyme almost completely secreted into culture fluid was identified as an endo-1,4-beta-xylanase. The function of the extracellular beta-xylanase is to hydrolyze xylan to oligosaccharides, mainly to xylobiose and xylotriose, which enter the cell where they are split by the second identified enzyme, a cell-bound beta-xylosidae (xylobiase). Aryl beta-xylosidase activity detected in the culture fluid was snown to be due to low affinity of beta-xylanase for p-nitrophenyl beta-D-xylopyranoside. This property of beta-xylanase was preserved after purification of the enzyme by chromatography on DEAE-cellulose, CM-Sephadex and Biogel A 1.5 m or Biogel P 100. Purified beta-xylanase exhibited certain microheterogeneity after polyacrylamide gel electrophoresis. Both extracellular beta-xylanase and intracellular beta-xylosidase were produced in much lower amounts by the cells grown on glucose than by the cells grown on xylan. This suggested that they are not produced constitutively. The investigated strain was not able to grow on cellulose and the crude and purified beta-xylanase were unable to hydrolyze cellulose or its soluble derivatives.
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