Seed arrival, ecological filters, and plant species richness: a meta-analysis

Community composition of phytopathogenic fungi significantly influences ectomycorrhizal fungal communities during subtropical forest succession

Ectomycorrhizal fungi (EMF) can form symbiotic relationships with plants, aiding in plant growth by providing access to nutrients and defense against phytopathogenic fungi. In this context, factors such as plant assemblages and soil properties can impact the interaction between EMF and phytopathogenic fungi in forest soil. However, there is little understanding of how these fungal interactions evolve as forests move through succession stages. In this study, we used high-throughput sequencing to investigate fungal communities in young, intermediate, and old subtropical forests. At the genus level, EMF communities were dominated by Sebacina, Russula, and Lactarius, while Mycena was the most abundant genus in pathogenic fungal communities. The relative abundances of EMF and phytopathogenic fungi in different stages showed no significant difference with the regulation of different factors. We discovered that interactions between phytopathogenic fungi and EMF maintained a dynamic balance under the influence of the differences in soil quality attributed to each forest successional stage. The community composition of phytopathogenic fungi is one of the strong drivers in shaping EMF communities over successions. In addition, the EMF diversity was significantly related to plant diversity, and these relationships varied among successional stages. Despite the regulation of various factors, the positive relationship between the diversity of phytopathogenic fungi and EMF remained unchanged. However, there is no significant difference in the ratio of the abundance of EMF and phytopathogenic fungi over the course of successions. These results will advance our understanding of the biodiversity-ecosystem functioning during forest succession. KEY POINTS: •Community composition of both EMF and phytopathogenic fungi changed significantly over forest succession. •Phytopathogenic fungi is a key driver in shaping EMF community. •The effect of plant Shannon's diversity on EMF communities changed during the forest aging process.

Strengthened plant-microorganism interaction after topsoil removal cause more deterministic microbial assembly processes and increased soil nitrogen mineralization

Topsoil removal, among other restoration measures, has been recognized as one of the most successful methods to restore biodiversity and ecosystem functioning in European grasslands. However, knowledge about how removal as well as other restoration methods influence interactions between plant and microbial communities is very limited. The aims of the current study were to understand the impact of topsoil removal on plant-microorganism interactions and on soil nitrogen (N) mineralization, as one example of ecosystem functioning. We examined how three different grassland restoration methods, namely 'Harvest only', 'Topsoil removal' and 'Topsoil removal + Propagules (plant seed addition)', affected i) the interactions between plants and soil microorganisms, ii) soil microbial community assembly processes, and iii) soil N mineralization. We compared the outcome of these three restoration methods to initial degraded and target semi-natural grasslands in the Canton of Zurich, Switzerland. We were able to show that 'Topsoil removal' and 'Topsoil removal + Propagules', but not 'Harvest only', reduced the soil total N pool and available N concentration, but increased soil N mineralization and strengthened the plant-microorganism interactions. Microbial community assembly processes shifted towards more deterministic after both topsoil removal treatments. These shifts could be attributed to an increase in dispersal limitation and selection due to stronger interactions between plants and soil microorganisms. The negative relationship between soil N mineralization and microbial community stochasticity indicated that microbial assembly processes, to some extent, can be incorporated into model predictions of soil functions. Overall, the results suggest that topsoil removal may change the microbial assembly processes and thus the functioning of grassland ecosystems by enhancing the interaction between plants and soil microorganisms.

Variation in Successional Dynamics Shape Biodiversity Patterns over a Tropical-Temperate Latitudinal Gradient

AbstractSuccessional dynamics can vary because of a range of ecological and environmental factors, but our understanding of biogeographic variation in succession, and the processes contributing to community development across ecosystems, is limited. The pattern and rate of recruitment of dispersive propagules likely differs over large spatial scales and can be an important predictor of successional trajectory. Over a 20° tropical-temperate latitudinal gradient, we measured sessile invertebrates over 12 months of community development and successive 3-month recruitment windows to understand succession and how it is influenced by recruitment. Succession and recruitment patterns varied over latitude. In the tropics, fast temporal turnover, fluctuating abundances, and lack of successional progression suggest that the contribution of stochastic processes was high. As latitude increased, successional progression became more apparent, characterized by increasing species richness and community cover and a shift to more competitive taxa over time. At temperate locations, species identities were similar between older communities and recruiting assemblages; however, community composition became more variable across space over time. Such divergence suggests an important role of early colonizers and species interactions on community structure. These findings demonstrate differences in the processes contributing to community development and biodiversity patterns over latitude. Understanding such biogeographic variation in community dynamics and identifying the prevalence of different processes can provide insights into how communities assemble and persist in response to environmental variability.

Linear relationships between aboveground biomass and plant species diversity during the initial stage of degraded grassland restoration projects

The relationship between aboveground biomass and plant diversity has been extensively examined to understand the role of biodiversity in ecosystem functions and services. Degraded grassland restoration projects can enhance carbon sequestration. However, the relationship between biomass and diversity remains one of the most actively debated topics regarding grassland ecosystems in degraded grassland restoration projects. We speculated that establishing the linear relationships between aboveground biomass and plant species diversity could contribute to enhancing the efficacy of degraded grassland restoration projects. This study sought to determine whether these relationships were linear during the initial stages of the restoration projects of degraded grasslands in Xing'an League, China. The investigations were based on an examination of seventy-six 1 × 1 m2 plots distributed among 15 areas in which the degraded grassland was at the initial stages of restoration. To quantify the species diversity of the degraded grassland communities, we used the species richness, Shannon-Wiener, inverse Simpson's reciprocal, and Pielou's evenness indices. Our analyses revealed that aboveground biomass had clear positive linear relationships with species richness during the initial stages of degraded grassland restoration. However, there were less pronounced associations with species diversity as assessed using the Shannon and inverse Simpson indices, based on regression models. Furthermore, weed biomass was found to have significant negative effects on species richness and Pielou's evenness. The weak linear relationship between aboveground biomass and species richness could be ascribed to an increase in weed biomass. We concluded that aboveground biomass and plant species diversity could be enhanced during the initial stages of degraded grassland restoration projects and suggest that the extent of weed biomass could serve as a key indicator of the efficacy of restoration from the perspective of plant species diversity and aboveground biomass in carbon sequestration projects.

Trophic rewilding as a restoration approach under emerging novel biosphere conditions

Rewilding is a restoration approach that aims to promote self-regulating complex ecosystems by restoring non-human ecological processes while reducing human control and pressures. Rewilding is forward-looking in that it aims to enhance functionality for biodiversity, accepting and indeed promoting the dynamic nature of ecosystems, rather than fixating on static composition or structure. Rewilding is thus especially relevant in our epoch of increasingly novel biosphere conditions, driven by strong human-induced global change. Here, we explore this hypothesis in the context of trophic rewilding - the restoration of trophic complexity mediated by wild, large-bodied animals, known as 'megafauna'. This focus reflects the strong ecological impacts of large-bodied animals, their widespread loss during the last 50,000 years and their high diversity and ubiquity in the preceding 50 million years. Restoring abundant, diverse, wild-living megafauna is expected to promote vegetation heterogeneity, seed dispersal, nutrient cycling and biotic microhabitats. These are fundamental drivers of biodiversity and ecosystem function and are likely to gain importance for maintaining a biodiverse biosphere under increasingly novel ecological conditions. Non-native megafauna species may contribute to these effects as ecological surrogates of extinct species or by promoting ecological functionality within novel assemblages. Trophic rewilding has strong upscaling potential via population growth and expansion of wild fauna. It is likely to facilitate biotic adaptation to changing climatic conditions and resilience to ecosystem collapse, and to curb some negative impacts of globalization, notably the dominance of invasive alien plants. Finally, we discuss the complexities of realizing the biodiversity benefits that trophic rewilding offers under novel biosphere conditions in a heavily populated world.

Establishment from seed is more important for exotic than for native plant species

Climate change has initiated movement of both native and non-native (exotic) species across the landscape. Exotic species are hypothesized to establish from seed more readily than comparable native species. We tested the hypothesis that seed limitation is more important for exotic species than native grassland species. We compared seed limitation and invasion resistance over three growing seasons between 18 native and 18 exotic species, grown in both monocultures and mixtures in a field experiment. Half of the plots received a seed mix of the contrasting treatment (i.e., exotic species were seeded into native plots, and native species were seeded into exotic plots), and half served as controls. We found that (1) establishment in this perennial grassland is seed limited, (2) establishment from seed is greater in exotic than native species, and (3) community resistance to seedling establishment was positively related to diversity of extant species, but only in native communities. Native-exotic species diversity and composition differences did not converge over time. Our results imply that native to exotic transformations occur when diversity declines in native vegetation and exotic seeds arrive from adjacent sites, suggesting that managing for high diversity will reduce transformations to exotic dominance.

Relationships between species richness and biomass production are context dependent in grasslands differing in land-use and seed addition

Despite evidence from grasslands experiments suggesting that plant species loss reduces biomass production, the strength of biodiversity-ecosystem functioning relationships in managed grasslands is still debated. High land-use intensity and reduced species pools are often suggested to make relationships between biodiversity and productivity less positive or even negative, but concrete evidence is still scarce. We investigated biodiversity-productivity relationships over two years in 150 managed grasslands in Germany. Specifically, we distinguished between relationships of biodiversity and biomass production in managed grasslands (1) varying in land-use intensity (e.g. of mowing, grazing and/or fertilization), (2) where land-use intensity is experimentally reduced, and (3) where additionally to land-use reductions, species pools are enlarged by seed addition. Among grasslands varying in land-use intensity, we found negative biodiversity-productivity relationships. Land-use reduction weakened these relationships, towards neutral, and sometimes, even positive relationships. Seed addition reduced species pool limitations, but this did not strengthen biodiversity-productivity relationships. Our findings indicate that land-use intensity is an important factor explaining the predominantly negative biodiversity-productivity relationships in managed grasslands. While we did not find that species pool limitations weakened biodiversity-productivity relationships, our results are based on a two-year-old experiment, possibly such effects are only visible in the long-term. Ultimately, advancing insights on biodiversity-ecosystem functioning relationships helps us to understand under which conditions agricultural production may benefit from promoting biodiversity.

Extinction debt and functional traits mediate community saturation over large spatiotemporal scales

Determining if ecological communities are saturated (have a limit to the number of species they can support) has important implications for understanding community assembly, species invasions, and climate change. However, previous studies have generally been limited to short time frames that overlook extinction debt and have not explicitly considered how functional trait diversity may mediate patterns of community saturation. Here, we combine data from biodiversity surveys with functional and phylogenetic data to explore if the colonisation events after the Great American Biotic Interchange (closure of the Panamanian Isthmus) resulted in increases in species richness of communities of the snake family Dipsadidae. We determined the number and the direction of dispersal events between Central and South America by estimating ancestral areas based on a Bayesian time-calibrated phylogenetic analysis. We then evaluated whether variation in community saturation was mediated by the functional similarity of six traits for the resident and colonizing snakes and/or local environmental conditions. We found that colonised communities did not support more species than those that were not colonised. Moreover, we did not find an association between the functional diversity across sites and whether they were colonised by members from the lineages dispersing across the Isthmus or not. Instead, variation in species richness was predicted best by covariates such as time since colonisation and local environment. Taken together, our results suggest that snake communities of the Dipsadidae across the neotropics are saturated. Moreover, our research highlights two important factors to consider in studies of community saturation: extinction debt and the functional differences and similarities in species' ecological roles.

Could green infrastructure supplement ecosystem service provision from semi-natural grasslands?

Ancient semi-natural grasslands in Europe are important for ecosystem service (ES) provision. Often, the surrounding matrix contains 'Grassland Green Infrastructure' (GGI) that contain grassland species which have the potential to supplement grassland ES provision across the landscape. Here we investigate the potential for GGI to deliver a set of complementary ES, driven by plant composition.We surveyed 36 landscapes across three European countries comprising core grasslands and their surrounding GGI. We calculated community-level values of plant species characteristics to provide indicators for four ES: nature conservation value, pollination, carbon storage and aesthetic appeal.Inferred ES delivery for GGI was substantially lower than in core grasslands for conservation, pollination and aesthetic appeal indicators, but not for carbon storage. These differences were driven by the GGI having 17% fewer plant species, and compositional differences, with 61% of species unique to the core grasslands. In addition, connectivity to the core, the amount of GGI and inferred seed dispersal distances by livestock, were strongly positively correlated with conservation value, pollination and aesthetic indicators. All ES indicators showed similar responses to the GGI spatial structure and distance to the core, suggesting robust effects of these drivers on ES. We projected that improved landscape-wide delivery of nature conservation value and pollination could be achieved through targeted GGI management. Reductions in the distances seeds would need to disperse, more GGI, along with a diversification of the GGI elements, were predicted to enhance service credits.We conclude that for vegetation-related ES, species surveys can be employed to assess potential ES delivery. Creating and enhancing GGI is a useful landscape management strategy to supplement the ES delivered by ancient grasslands.

Island biogeography, competition, and abiotic filtering together control species richness in habitat islands formed by nurse tree canopies in an arid environment

The theory of island biogeography predicts that island size is a key predictor of community species richness. Islands can include any habitat surrounded environments that are inhospitable to the resident species. In arid environments, nurse trees act as islands in an environment uninhabitable to many plant species, and the size of the canopy controls the size of the understory plant community. We predicted that plant species richness will be affected by the area of the habitat and decrease with habitat isolation. We sampled the adult and seedling plant communities at canopy center, canopy edge, and outside canopy microhabitats. We found that species richness in both adult and seedling communities increases with increasing island area. However, richness in seedling communities was greater than in adult communities, and this effect was greatest at the canopy center microhabitat. Competition has been demonstrated to be more important in controlling species distributions near the canopy center, and stress is more important near the canopy edge. Thus, our results suggest that neutral forces, biotic interactions, and abiotic filtering act together to control species richness in these island communities.

Species Composition, Structure, and Regeneration Status of Woody Plants and Anthropogenic Disturbances in Zijje Maryam Church Forest, Ethiopia

Our current study was conducted in Zijje Maryam Church Forest, Ethiopia, to explore woody species composition, structure, regeneration status, and anthropogenic disturbances inside the sacred groves. The aforementioned information for adequate conservation and management of the church forest is not well documented. Fifteen main quadrats each having an area of 625 m2 (25 m × 25 m) were used for vegetation and disturbance data collection. Determination of the sampled quadrats was based on the principle that minimum quadrats give the smallest possible area in which all species occurring in the church forest are present. All woody species with a diameter at breast height (DBH) ≥ 2.5 cm within the quadrat were identified, counted, and their height and DBH data were recorded. The criterion to start at DBH ≥ 2.5 cm was to exclude seedlings having DBH < 2.5 cm and height ≤0.6 m. Sapling and seedling data were collected using 45 saplings and 45 seedling quadrat that measured 4 m2 and 1 m2, respectively. Vegetation data analysis and ANOVA were used for statistical comparison. A total of 48 woody plant species belonging to 46 genera and 36 families were identified. Fabaceae was the dominant family containing 5 species followed by Rosaceae with 3 species. Total basal area of the church forest was 83.03 m2 ha-1. The density of seedlings, saplings, and matured woody species stem ha-1 were 15555, 3833, and 865, respectively. Talking these densities, the regeneration status of the forest was good. The Shannon diversity and evenness of woody plant species in the forest was high, 3.29 and 0.85, respectively. Juniperus procera 27.67 (9.22%) and Olea europaea were species with the highest IVI. Nearly, 22% of areas of the forest get disturbed and higher anthropogenic disturbances occurred near the edge of the forest. Gathering, clearing, and grazing are the major human disturbances that stakeholders need to tackle for conservation. Zijje Maryam Church Forest has heterogeneous species composition with varied seedlings and saplings. Therefore, local conservation policies recommended not only protect large forests, but also the small and valuable forests service to the needs of local people.

The effects of local filtering processes on the structure and functioning of native plant communities in experimental urban habitats

Despite a growing literature-base devoted to document biodiversity patterns in cities, little is known about the processes that influence these patterns, and whether they are consistent over time. In particular, numerous studies have identified the capacity of cities to host a rich diversity of plant species. This trend, however, is driven primarily by introduced species, which comprise a large proportion of the urban species pool relative to natives. Using an experimental common garden study, we assessed the relative influence of local assembly processes (i.e., soil environmental filtering and competition from spontaneous urban species) on the taxonomic and functional diversity of native plant communities sampled over four seasons in 2016-2018. Taxonomic and functional diversity exhibited different responses to local processes, supporting the general conclusion that species- and trait-based measures of biodiversity offer distinct insights into community assembly dynamics. Additionally, we found that neither soil nor competition from spontaneous urban species influenced taxonomic or functional composition of native species. Functional composition, however, did shift strongly over time and was driven by community-weighted mean differences in both measured traits (maximum height, Hmax; specific leaf area, SLA; leaf chlorophyll a fluorescence, Chl a) and the relative proportions of different functional groups (legumes, annual and biennial-perennial species, C4 grasses, and forbs). By contrast, taxonomic composition only diverged between early and late seasons. Overall, our results indicate that native species are not only capable of establishing and persisting in vacant urban habitats, they can functionally respond to local filtering pressures over time. This suggests that regional dispersal limitation may be a primary factor limiting native species in urban environments. Thus, future regreening and management plans should focus on enhancing the dispersal potential of native plant species in urban environments, in order to achieve set goals for increasing native species diversity and associated ecosystem services in cities.

Selection principles for Gaia

The Gaia hypothesis considers the life-environment coupled system as a single entity that acts to regulate and maintain habitable conditions on Earth. In this paper we discuss three mechanisms which could potentially lead to Gaia: Selection by Survival, Sequential Selection and Entropic Hierarchy. We use the Tangled Nature Model of co-evolution as a common framework for investigating all three, using an extended version of the standard model to elaborate on Gaia as an example of an entropic hierarchy. This idea, which combines sequential selection together with a reservoir of diversity that acts as a 'memory', implies a tendency towards growth and increasing resilience of the Gaian system over time. We then discuss how Gaian memory could be realised in practice via the microbial seed bank, climate refugia and lateral gene transfer and conclude by discussing testable implications of an entropic hierarchy for the study of Earth history and the search for life in the universe. This paper adds to the existing taxonomy of Gaia hypotheses to suggest an "Entropic Gaia" where we argue that increasing biomass, complexity and enhanced habitability over time is a statistically likely feature of a co-evolving system.

Seed banks alter metacommunity diversity: The interactive effects of competition, dispersal and dormancy

Dispersal and dormancy are two common strategies allowing for species persistence and the maintenance of biodiversity in variable environments. However, theory and empirical tests of spatial diversity patterns tend to examine either mechanism in isolation. Here, we developed a stochastic, spatially explicit metacommunity model incorporating seed banks with varying germination and survival rates. We found that dormancy and dispersal had interactive, nonlinear effects on the maintenance and distribution of metacommunity diversity. Seed banks promoted local diversity when seed survival was high and maintained regional diversity through interactions with dispersal. The benefits of seed banks for regional diversity were largest when dispersal was high or intermediate, depending on whether local competition was equal or stabilising. Our study shows that classic predictions for how dispersal affects metacommunity diversity can be strongly influenced by dormancy. Together, these results emphasise the need to consider both temporal and spatial processes when predicting multi-scale patterns of diversity.

Dam inundation simplifies the plant community composition

The construction of dams has caused riparian habitat degradation and ecosystem service loss globally. It is critical to assess the response of riparian plant communities to inundation gradients for their conservation. Recent evidence suggests that plant community assemblages are governed by flooding stress, soil nutrient availability, climate (environmental filtering) and dispersal, speciation, local extinction (dispersal filtering), but it remains unclear which dominates the riparian ecosystem regulated by a dam. Thus, this article aims to elucidate the relative importance of environmental and dispersal filtering to variations in plant communities to understand community assembly mechanisms in riparian ecosystems. Here we used plant community data related to four elevations in the riparian zone of the Three Gorges Dam Reservoir in China to show that species richness and diversity, community height, and the cover of total, annual, and exotic plant categories decreased, while the cover of perennial and native plant groups increased under higher flooding stress. Community composition varied substantially with elevation, and species composition tended to converge with increased inundation, characterized by flood-tolerant species. The community composition underwent stronger environmental filtering at low elevations and stronger dispersal filtering at high elevations, with stronger environmental filtering across riparian ecosystems. Therefore, we conclude that dam inundation drives community assemblages of riparian plants by the combined effects of environmental and dispersal filtering. Still, their relative contribution varies between elevations, and environmental filtering is more important in shaping community assembly. This study is the first to confirm that plant community assembly in the dam-regulated riparian area is determined by both niche-based and stochastic processes. Thus, we highlighted the importance of considering inundation intensity, propagule sources, and river connectivity when implementing restoration projects.

Abiotic Drivers of Seedling Bank Diversity in Subtropical Forests of Southern China

Abiotic factors are important to shape plant community composition and diversity through processes described as environmental filtering. Most studies on plant diversity in forests focus on adult trees, while the abiotic drivers of forest seedling community characteristics are less understood. Here, we studied seedling banks’ composition, richness, diversity, and abundance, and investigated their relationships with microsite abiotic conditions along a wide elevational gradient. We sampled seedling communities in 312 1-m2 quadrats, distributed in 13 one-ha plots in four subtropical forests in south China, covering an elevation gradient of 1500 m, for 2 years. We measured light availability, slope, and 11 soil nutrients for each seedling quadrat. We used analysis of similarities and multivariate analysis of variance to compare the composition and abiotic drivers of the four forests’ seedling communities. We then used mixed models and structural equation modeling to test the direct and indirect effects of abiotic factors on seedling species richness, diversity, and abundance. The differences in seedling community composition among these forests were mostly explained by differences in elevations and soil nutrients. Seedling diversity as Shannon and Simpson diversity index decreased with increasing elevation and increased with increasing slope, but seedling abundance and species richness did not. Elevation had an indirect effect on Simpson’s diversity index through modulating the direct effects of soil properties. Our findings show that soil properties play a prominent role in favoring differentiation in species composition among the four forests we studied and provide additional evidence to decreasing species diversity with elevation. However, this was reflected in decreasing Shannon and Simpson indices rather than species richness, which is more commonly studied. Whether and to what extent future environmental changes in climate and soil acidification will alter future forest composition and diversity needs to be investigated.

Methods for vegetative propagation of wild enset (Ensete ventricosum (Welw.) Cheesman) that make genotype conservation possible

The declining trends in crop wild relative genetic resources in many crop centers of origins including Ethiopia require short and long-term conservation strategies. Enset (Ensete ventricosum) is arguably the most important cultivated food security crop of Ethiopia with dwindling wild stocks. The cultivated enset is propagated clonally through adventitious bud sprouting from the corm after the distraction of the apical meristem. Shoot regeneration in the cultivated enset has been induced by humans and has not been observed to occur naturally. The technique of shoot induction has not been extended to the wild enset. To determine whether the capacity for shoot regeneration existed in wild enset and optimize the technique, a series of experiments were conducted. These involved: (i) sucker production from corms of wild enset with and without apical meristem removal; (ii) sprouting capacity of corms ranging 22–49 cm diameter, with removed apical meristem; and (iii) a factorial experiment involving two populations of wild enset (from Shebena and Getiba localities in Sheka zone), two ways of preparing or cutting the corms: tero and tubo, i.e. cutting the pseudostem at the corm junction and cutting it at 25–30 cm height, respectively, and three extents of parting the corm (whole, half, and quarter) using corms with a diameter of 45 ± 2.9 cm. The experiments revealed that wild enset can be successfully propagated vegetatively in the same way as the cultivated enset. It also revealed that the regeneration process involved callus formation and adventurous bud proliferation from corms only after the apical meristem was removed. Corms of different sizes varied in their capacity for regeneration significantly with a linear increase in regeneration frequency with corm size. With a one cm increase in corm diameter, regeneration frequency increased by 3.138 %. The two populations of wild enset showed non-significant differences in regeneration capacity; however, the achieved regeneration was generally analogous to that observed among cultivated enset clones: whole corms resulted in a longer time to emergence and fewer sucker per corm than split corms. Specifically, halved corms emerged significantly (p < 0.05) earlier (71 ± 9 and 75 ± 7 days, for Shebena and Getiba populations, respectively) than whole corms (120 days). Regeneration frequency was higher (75–100%) for split than for whole corms (33–56%). The highest rate of suckering (94 ± 14 per corm) was achieved from quarter corms prepared by cutting the pseudo-stem at the junction. In conclusion, the adventitious bud propagation technique developed by farmers to propagate the cultivated enset can successfully be used for the clonal regeneration of wild enset. We recommend the adoption of this shoot induction to conserve and maintain the rapidly eroding wild enset genetic resources in Ethiopia. In addition, wild enset plants with promising characteristics may be fixed using the method to enrich the gene pool of the cultivated enset.

Assessing Biotic and Abiotic Interactions of Microorganisms in Amazonia through Co-Occurrence Networks and DNA Metabarcoding

Species may co-occur due to responses to similar environmental conditions, biological associations, or simply because of coincident geographical distributions. Disentangling patterns of co-occurrence and potential biotic and abiotic interactions is crucial to understand ecosystem function. Here, we used DNA metabarcoding data from litter and mineral soils collected from a longitudinal transect in Amazonia to explore patterns of co-occurrence. We compared data from different Amazonian habitat types, each with a characteristic biota and environmental conditions. These included non-flooded rainforests (terra-firme), forests seasonally flooded by fertile white waters (várzeas) or by unfertile black waters (igapós), and open areas associated with white sand soil (campinas). We ran co-occurrence network analyses based on null models and Spearman correlation for all samples and for each habitat separately. We found that one third of all operational taxonomic units (OTUs) were bacteria and two thirds were eukaryotes. The resulting networks were nevertheless mostly composed of bacteria, with fewer fungi, protists, and metazoans. Considering the functional traits of the OTUs, there is a combination of metabolism modes including respiration and fermentation for bacteria, and a high frequency of saprotrophic fungi (those that feed on dead organic matter), indicating a high turnover of organic material. The organic carbon and base saturation indices were important in the co-occurrences in Amazonian networks, whereas several other soil properties were important for the co-exclusion. Different habitats had similar network properties with some variation in terms of modularity, probably associated with flooding pulse. We show that Amazonian microorganism communities form highly interconnected co-occurrence and co-exclusion networks, which highlights the importance of complex biotic and abiotic interactions in explaining the outstanding biodiversity of the region.

Simplified Communities of Seed-Dispersers Limit the Composition and Flow of Seeds in Edge Habitats

Edge effects, driven by human modification of landscapes, can have critical impacts on ecological processes such as species interactions, with cascading impacts on biodiversity as a whole. Characterizing how edges affect vital biotic interactions such as seed dispersal by frugivores is important for better understanding potential mechanisms that drive species coexistence and diversity within a plant community. Here, we investigated how differences between frugivore communities at the forest edge and interior habitats of a diverse tropical rainforest relate to patterns of animal-mediated seed dispersal and early seedling recruitment. We found that the lemur communities across the forest edge-interior gradient in this system showed the highest species richness and variability in body sizes at intermediate distances; the community of birds showed the opposite pattern for species richness. Three large-bodied frugivores, known to be effective dispersers of large seeds, tended to avoid the forest edge. As result, the forest edges received a lower rate of animal-mediated seed dispersal compared to the interior habitats. In addition, we also found that the seeds that were actively dispersed by animals in forest edge habitats were smaller in size than seeds dispersed in the forest interior. This pattern was found despite a similarity in seed size of seasonally fruiting adult trees and shrubs between the two habitats. Despite these differences in dispersal patterns, we did not observe any differences in the rates of seedling recruitment or seed-size distribution of successful recruit species. Our results suggest that a small number of frugivores may act as a potential biotic filter, acting on seed size, for the arrival of certain plant species to edge habitats, but other factors may be more important for driving recruitment patterns, at least in the short term. Further research is needed to better understand the potential long-term impacts of altered dispersal regimes relative to other environmental factors on the successional dynamics of edge communities. Our findings are important for understanding potential ecological drivers of tree community changes in forest edges and have implications for conservation management and restoration of large-seeded tree species in disturbed habitats.

The function-dominance correlation drives the direction and strength of biodiversity-ecosystem functioning relationships

Community composition is a primary determinant of how biodiversity change influences ecosystem functioning and, therefore, the relationship between biodiversity and ecosystem functioning (BEF). We examine the consequences of community composition across six structurally realistic plant community models. We find that a positive correlation between species' functioning in monoculture versus their dominance in mixture with regard to a specific function (the "function-dominance correlation") generates a positive relationship between realised diversity and ecosystem functioning across species richness treatments. However, because realised diversity declines when few species dominate, a positive function-dominance correlation generates a negative relationship between realised diversity and ecosystem functioning within species richness treatments. Removing seed inflow strengthens the link between the function-dominance correlation and BEF relationships across species richness treatments but weakens it within them. These results suggest that changes in species' identities in a local species pool may more strongly affect ecosystem functioning than changes in species richness.

Seed-rain-successional feedbacks in wet tropical forests

Tropical forest regeneration after abandonment of former agricultural land depends critically on the input of tree seeds, yet seed dispersal is increasingly disrupted in contemporary human-modified landscapes. Here, we introduce the concept of seed-rain-successional feedbacks as a deterministic process in which seed rain is shaped by successional dynamics internal to a forest site and that acts to reinforce priority effects. We used a combination of time series and chronosequence approaches to investigate how the quantity and taxonomic and functional composition of seed rain change during succession and to evaluate the strength of seed-rain-successional feedbacks, relative to other deterministic and stochastic mechanisms, in secondary wet forests of Costa Rica. We found that both successional niches and seed-rain-successional feedbacks shaped successional trajectories in the seed rain. Determinism due to successional niche assembly was supported by the increasing convergence of community structure to that of a mature forest, in terms of both functional and taxonomic composition. With successional age, the proportions of large-seeded, shade-tolerant species in the seed rain increased, whereas the proportion of animal-dispersed species did not change significantly. Seed-rain-successional feedbacks increased in strength with successional age, as the proportion of immigrant seeds (species not locally represented in the site) decreased with successional age, and the composition of the seed rain became more similar to that of the adult trees at the forest site. The deterministic assembly generated by seed-rain-successional feedback likely contributed to the increasing divergence of secondary forest sites from each other during succession. To the extent that human modification of tropical forest landscapes reduces connectivity via factors such as forest cover loss, our results suggest that seed-rain-successional feedbacks are likely to increasingly shape regeneration trajectories in and amplify floristic heterogeneity among tropical secondary forests.

Environment-driven changes in diversity of riparian plant communities along a mountain river

The study of changes in species richness and composition along rivers has focused on large spatial scales. It has been ignored that in different sections of the river (high mountain area, middle zone, and mouth of the river) the specific environmental conditions can generate different longitudinal patterns of the species richness and composition. In this study, we determine whether species richness and composition of the riparian plant communities change along a mountain river and whether these changes are related to environmental variables. We expect an increase in species richness and turnover along the river, that the upstream communities would be a subset of the downstream communities, and that such would be related to edaphic and hydrologic conditions. To test this, we sampled three strata of the riparian vegetation (upper: individuals with <1 cm of ND, middle: individuals with >1 cm of ND, low: individuals with >1 m tall) in a set of 15 sites that we place along a mountain river. Additionally, we recorded topographic, hydrological, morphological, and soil variables. We performed correlation analyzes to determine whether changes in species richness and turnover were related to increased distance to the origin of the river. Also, we obtained the nestedness and evaluated the importance of environmental variables with GLM, LASSO regression, and CCA. With the increase in distance, the species richness decreases in the upper stratum, but not in the middle and the low stratum (although the highest values were observed near the origin of the river), the turnover increase in all strata and the upstream communities were not a subset of the downstream communities. The changes in species richness and composition were related to topographic (altitude), hydrological (flow), and edaphic (conductivity and pH) variables. Our results indicate that at small spatial scales the patterns of richness and composition differ from what has been found at larger spatial scales and that these patterns are associated with environmental changes in the strong altitude gradients of mountain rivers.

The role of land-use history in driving successional pathways and its implications for the restoration of tropical forests

Secondary forests are increasingly important components of human‐modified landscapes in the tropics. Successional pathways, however, can vary enormously across and within landscapes, with divergent regrowth rates, vegetation structure and species composition. While climatic and edaphic conditions drive variations across regions, land‐use history plays a central role in driving alternative successional pathways within human‐modified landscapes. How land use affects succession depends on its intensity, spatial extent, frequency, duration and management practices, and is mediated by a complex combination of mechanisms acting on different ecosystem components and at different spatial and temporal scales. We review the literature aiming to provide a comprehensive understanding of the mechanisms underlying the long‐lasting effects of land use on tropical forest succession and to discuss its implications for forest restoration. We organize it following a framework based on the hierarchical model of succession and ecological filtering theory. This review shows that our knowledge is mostly derived from studies in Neotropical forests regenerating after abandonment of shifting cultivation or pasture systems. Vegetation is the ecological component assessed most often. Little is known regarding how the recovery of belowground processes and microbiota communities is affected by previous land‐use history. In published studies, land‐use history has been mostly characterized by type, without discrimination of intensity, extent, duration or frequency. We compile and discuss the metrics used to describe land‐use history, aiming to facilitate future studies. The literature shows that (i) species availability to succession is affected by transformations in the landscape that affect dispersal, and by management practices and seed predation, which affect the composition and diversity of propagules on site. Once a species successfully reaches an abandoned field, its establishment and performance are dependent on resistance to management practices, tolerance to (modified) soil conditions, herbivory, competition with weeds and invasive species, and facilitation by remnant trees. (ii) Structural and compositional divergences at early stages of succession remain for decades, suggesting that early communities play an important role in governing further ecosystem functioning and processes during succession. Management interventions at early stages could help enhance recovery rates and manipulate successional pathways. (iii) The combination of local and landscape conditions defines the limitations to succession and therefore the potential for natural regeneration to restore ecosystem properties effectively. The knowledge summarized here could enable the identification of conditions in which natural regeneration could efficiently promote forest restoration, and where specific management practices are required to foster succession. Finally, characterization of the landscape context and previous land‐use history is essential to understand the limitations to succession and therefore to define cost‐effective restoration strategies. Advancing knowledge on these two aspects is key for finding generalizable relations that will increase the predictability of succession and the efficiency of forest restoration under different landscape contexts.

Environment shapes the spatial organization of tree diversity in fragmented forests across a human-modified landscape

Biodiversity patterns are shaped by the combination of dispersal, environment, and stochasticity, but how the influence of these drivers changes in fragmented habitats remains poorly understood. We examined patterns and relationships among total (γ) and site-level (α) diversity, and site-to-site variation in composition (β-diversity) of tree communities in structurally contiguous and fragmented tropical rainforests within a human-modified landscape in India's Western Ghats. First, for the entire landscape, we assessed the extent to which habitat type (fragment or contiguous forest), space and environment explained variation in α-diversity and composition. Next, within fragments and contiguous forest, we assessed the relative contribution of spatial proximity, environmental similarity, and their joint effects in explaining β-diversity. We repeated these assessments with β-diversity values corrected for the confounding effects of α- and γ-diversity using null models (β-deviation). Lower γ-diversity of fragments resulted from both lower α- and β-diversity compared to contiguous forests. However, β-deviation did not differ between contiguous forests and fragments. Fragmented and contiguous forest clearly diverged in floristic composition, which was attributable to β-diversity being driven by differences in elevation and MAP. Within fragmented forest, neither space nor environment explained β-diversity, but β-deviation increased with greater elevational differences. In contiguous forests by comparison, environment alone (mainly elevation) explained the most variation in β-diversity and β-deviation of both species' occurrences and abundances. Spatial gradients in environmental conditions played a larger role than dispersal limitation in shaping diversity and composition of tree communities across forest fragments. Thus, location of remnant patches at different elevations was a key factor underlying site-to-site variability in species abundances across fragments. Understanding the environmental characteristics of remnant forests in human-modified landscapes, combined with knowledge of species-environment relationships across different functional groups, would therefore be important considerations for management and restoration planning in human-modified landscapes.

The mechanism of species coexistence and diversity maintenance along aspects in the northeast of the Qinghai–Tibetan plateau

To examine the role of plant functional traits and phylogenetic relationships in predicting plant community species coexistence and diversity maintenance, we measured 73 species and six functional traits along a slope aspect gradient on the Qinghai–Tibetan plateau. We calculated the net relatedness index (NRI), the nearest taxon index (NTI), phylogenetic diversity (PD), functional diversity, and analysed phylogenetic signals. The results show that the species richness, plant composition, and PD changed substantially from northern to southern aspects, and the phylogenetic structure of the community changed from clustering to over-dispersion. Weak phylogenetic signals in plant height, leaf nitrogen content, and leaf potassium content were recorded. We conclude that the influencing factor(s) of species coexistence on northern and north-western aspects is limiting similarity (interspecific competition), whereas on southern and south-western aspects, habitat filtering (environmental effect) is predominant. On western aspects, the influencing factors are driven by three processes: limiting similarity, habitat filtration, and random processes. Results suggest that niche processes (including habitat filtration and limiting similarity) are the main mechanisms for species coexistence and diversity maintenance on aspects of the alpine meadow in the northeast of the Qinghai–Tibetan plateau, while random processes appear at the transitional zone (the western aspect in our study) between aspects.

Species pool size alters species-area relationships during experimental community assembly

The species pool concept has advanced our understanding for how biodiversity is coupled at local and regional scales. However, it remains unclear how species pool size, the number of species available to disperse to a site, influences community assembly across spatial scales. We provide one of the first studies that assesses diversity across scales after experimentally assembling grassland communities from species pools of different sizes. We show that species pool size causes scale-dependent effects on diversity in grasslands undergoing restoration by altering the shape of the species-area relationship (SAR). Specifically, larger species pools increased the slope of the SAR, but not the intercept, suggesting that dispersal from a larger pool causes species to be more spatially aggregated. This increased aggregation appears to be caused by sampling effects due to fewer individuals arriving per species, rather than stronger species sorting across variation in soil moisture. These scale-dependent effects suggest that studies evaluating species pools at a single, small scale may underestimate their effects, thereby contributing to uncertainty about the importance of regional processes for community assembly and their consequences for ecological restoration.

Drivers of farmer-managed natural regeneration in the Sahel. Lessons for restoration

Farmer-managed natural regeneration (FMNR) is being promoted for restoration beyond its original range in the Sahel. FMNR involves farmers selecting and managing natural regeneration on their fields, while keeping them under the primary function of agricultural production. However, little is known about what regenerates in different contexts, even though this underlies potential restoration impact. Here we assess how human impact, land degradation and dispersal limitation affect structural and functional properties of regeneration across 316 plots in agroforestry parklands of Ghana and Burkina Faso. We found that intensity of land use (grazing and agricultural practices) and dispersal limitation inhibited regeneration, while land degradation did not. Functional composition of regenerating communities shifted towards shorter statured, small-seeded and conservative strategies with intensity of land use. We conclude that the presence of trees of desired species in the vicinity is a precondition for successfully implementing FMNR for restoration, and that regeneration needs to be protected from grazing. Assessment of regeneration potential is imperative for scaling out FMNR and where natural regeneration will be insufficient to achieve restoration targets, FMNR needs to be complemented with tree planting.

Fate of the soil seed bank of giant ragweed and its significance in preventing and controlling its invasion in grasslands

Giant ragweed (Ambrosia trifida, L. henceforth referred to as GR), an annual non-native invasive weed, may cause health problems and can reduce agricultural productivity. Chemical control of GR in grasslands may have irreversible side effects on herbs and livestock. In an attempt to propose a solution to the harmful effects of GR on grasslands, this study explores the fate of its soil seed bank (SSB) and considers the physical control of its SSB reduction. By studying GR distributed in grasslands of the Yili Valley, Xinjiang, China, we measured the spatial and temporal changes in seed density, seed germination, dormancy, and death. We analyzed seed germination, dormancy, and death following different storage periods. The study analyzed population characteristics over time, including seed fate, and examined physical control methods for reducing the SSB density. The SSB of GR occurs in the upper 0-15 cm of soil in grasslands. Seed density in the SSB decreased by 68.1% to 82.01% from the reproductive growth period to the senescence period. More than 98.7% of the seeds were rotten, eaten, germinated, dispersed, or died within one year after being produced. The seed germination rate of the SSB decreased with the number of years after invasion. When stored for 0.5 or 3.5 years, seed germination rates fell by 40%, during which time seed death rate increased by almost 40%. When GR was completely eradicated for two consecutive years, the SSB and population densities decreased by >99%. The vast majority of GR seeds germinated or died within one year; the germination rate decreased significantly if the seeds were stored dry at room temperature for a long time. Newly produced seeds are the main source of seeds in the SSB. Therefore, thoroughly eradicating GR plants for several years before the seeds can mature provides an effective control method in grasslands.

Environmental niche patterns of native and non-native fishes within an invaded African river system

To test ecological niche theory, this study investigated the spatial patterns and the environmental niches of native and non-native fishes within the invaded Great Fish River system, South Africa. For the native fishes, there were contrasting environmental niche breadths that varied from being small to being large and overlapped for most species, except minnows that were restricted to headwater tributaries. In addition, there was high niche overlap in habitat association among fishes with similar distribution. It was therefore inferred that habitat filtering-driven spatial organisation was important in explaining native species distribution patterns. In comparison, most non-native fishes were found to have broad environmental niches and these fishes showed high tolerance to environmental conditions, which generally supported the niche opportunity hypothesis. The proliferation of multiple non-native fishes in the mainstem section suggest that they form a functional assemblage that is probably facilitated by the anthropogenic modification of flow regimes through inter-basin water transfer. Based on the distribution patterns observed in the study, it was inferred that there was a likelihood of negative interactions between native and non-native fishes. Such effects are likely to be exacerbated by altered flow regime that was likely to have negative implications for native ichthyofauna.

Human-mediated dispersal and disturbance shape the metapopulation dynamics of a long-lived herb

As anthropogenic impacts on the natural world escalate, there is increasing interest in the role of humans in dispersing seeds. But the consequences of this Human-Mediated Dispersal (HMD) on plant spatial dynamics are little studied. In this paper, we ask how secondary dispersal by HMD affects the dynamics of a natural plant metapopulation. In addition to dispersal between patches, we suggest within-patch processes can be critical. To address this, we assess how variation in local population dynamics, caused by small-scale disturbances, affects metapopulation size. We created an empirically based model with stochastic population dynamics and dispersal among patches, which represented a real-world, cliff-top metapopulation of wild cabbage Brassica oleracea. We collected demographic data from multiple populations by tagging plants over eight years. We assessed seed survival, and establishment and survival of seedlings in intact vegetation vs. small disturbances. We modeled primary dispersal by wind using field data and used experimental data on secondary HMD by hikers. We monitored occupancy patterns over a 14-yr period in the real metapopulation. Disturbance had large effects on local population growth rates, by increasing seedling establishment and survival. This meant that the modeled metapopulation grew in size only when the area disturbed in each patch was above 35%. In these growing metapopulations, although only 0.2% of seeds underwent HMD, this greatly enhanced metapopulation growth rates. Similarly, HMD allowed more colonizations in declining metapopulations under low disturbance, and this slowed the rate of decline. The real metapopulation showed patterns of varying patch occupancy over the survey years, which were related to habitat quality, but also positively to human activity along the cliffs, hinting at beneficial effects of humans. These findings illustrate that realistic changes to dispersal or demography, specifically by humans, can have fundamental effects on the viability of a species at the landscape scale.

How mycorrhizal associations drive plant population and community biology

Mycorrhizal fungi provide plants with a range of benefits, including mineral nutrients and protection from stress and pathogens. Here we synthesize current information about how the presence and type of mycorrhizal association affect plant communities. We argue that mycorrhizal fungi regulate seedling establishment and species coexistence through stabilizing and equalizing mechanisms such as soil nutrient partitioning, feedback to soil antagonists, differential mycorrhizal benefits, and nutrient trade. Mycorrhizal fungi have strong effects on plant population and community biology, with mycorrhizal type-specific effects on seed dispersal, seedling establishment, and soil niche differentiation, as well as interspecific and intraspecific competition and hence plant diversity.

Dung beetles response to livestock management in three different regional contexts

The response of biological communities to human disturbances depends on factors acting at local and regional scale and on the interaction between them. We compared the response of native forest dung beetle communities to cattle grazing under regional contexts differing on precipitation patterns (Atlantic forest and humid and dry Chaco). Through multivariate and GLMM analyses we contrasted richness and composition across regions and land uses and explored the role of local and regional variables accounting for those changes. We captured a total of 44101 individuals of 109 species. The interaction between local and regional variables influenced the response to livestock management. In the two wet regions (humid Chaco and Atlantic forest) diversity was similar in the native forest regardless of cattle presence but differs strongly in open pastures. In contrast, in the dry Chaco, differences between native forest and land use were not evident. Vegetation structure was a major determinant of species richness, whereas regional climate determined differences in species composition. We concluded that the response of dung beetles to livestock management cannot be generalized for all biomes. In dry ecosystems, dung beetles are probably pre-adapted to environmental conditions imposed by cattle ranching whereas in wet ecosystems the impact of cattle ranching is more significant.

Soil heterogeneity increases plant diversity after 20 years of manipulation during grassland restoration

The "environmental heterogeneity hypothesis" predicts that variability in resources promotes species coexistence, but few experiments support this hypothesis in plant communities. A previous 15-yr test of this hypothesis in a prairie restoration experiment demonstrated a weak effect of manipulated soil resource heterogeneity on plant diversity. This response was attributed to a transient increase in richness following a post-restoration supplemental propagule addition, occasionally higher diversity under nutrient enrichment, and reduced cover of a dominant species in a subset of soil treatments. Here, we report community dynamics under continuous propagule addition in the same experiment, corresponding to 16-20 yr of restoration, in response to altered availability and heterogeneity of soil resources. We also quantified traits of newly added species to determine if heterogeneity increases the amount and variety of niches available for new species to exploit. The heterogeneous treatment contained a factorial combination of altered nutrient availability and soil depth; control plots had no manipulations. Total diversity and richness were higher in the heterogeneous treatment during this 5-yr study due to higher cover, diversity, and richness of previously established forbs, particularly in the N-enriched subplots. All new species added to the experiment exhibited unique trait spaces, but there was no evidence that heterogeneous plots contained a greater variety of new species representing a wider range of trait spaces relative to the control treatment. The richness and cover of new species was higher in N-enriched soil, but the magnitude of this response was small. Communities assembling under long-term N addition were dominated by different species among subplots receiving added N, leading to greater dispersion of communities among the heterogeneous relative to control plots. Contrary to the deterministic mechanism by which heterogeneity was expected to increase diversity (greater variability in resources for new species to exploit), higher diversity in the heterogeneous plots resulted from destabilization of formerly grass-dominated communities in N-enriched subplots. While we do not advocate increasing available soil N at large scales, we conclude that the positive effect of environmental heterogeneity on diversity can take decades to materialize and depend on development of stochastic processes in communities with strong establishment limitation.

Novel insights into how the mean and heterogeneity of abiotic conditions together shape forb species richness patterns in the Allegheny plateau ecoregion

ABSTRACT

While plant community theory tends to emphasize the importance of abiotic heterogeneity along niche axes, much empirical work seeks to characterize the influence of the absolute magnitude of key abiotic variables on diversity. Both magnitude (as reflected, e.g., by a mean) and heterogeneity (variance) in abiotic conditions likely contribute to biodiversity patterns in plant communities, but given the large number of putative abiotic drivers and the fact that each may vary at different spatiotemporal scales, the challenge of linking observed biotic patterns with the underlying environment remains acute. Using monitoring data from a natural resource agency, we compared how well statistical models of the mean, heterogeneity, and both the mean and heterogeneity combined of 17 abiotic factor variables explained patterns of forb species richness in Northeast Ohio, USA. We performed our analyses at two spatial scales, repeated in spring and summer across four forest types. Although all models explained a great deal of the variance in species richness, models including both the mean and heterogeneity of different abiotic factors together outperformed models including either the mean or the heterogeneity of abiotic factors alone. Variability in forb species richness was mostly due to changes in mean calcium levels regardless of forest type. After accounting for forest type, we were able to attribute variation in forb species richness to changes in the heterogeneity of different abiotic factors as well. Our results suggest that multiple mechanisms act simultaneously according to different aspects of the abiotic environment to structure forb communities, and this underscores the importance of considering both the magnitude of and heterogeneity in multiple abiotic factors when looking for links between the abiotic environment and plant community patterns. Finally, we identify novel patterns across spatial scales, forest types, and seasons that can guide future research in this vein.

OPEN RESEARCH BADGES

This article has earned an Open Data Badge for making publicly available the digitally-shareable data necessary to reproduce the reported results. The data is available at https://doi.org/10.5061/dryad.kp3cb17.

Do No Harm: Efficacy of a Single Herbicide Application to Control an Invasive Shrub While Minimizing Collateral Damage to Native Species

Control of invasive exotic species in restorations without compromising the native plant community is a challenge. Efficacy of exotic species control needs to consider collateral effects on the associated plant community. We asked (1) if short-term control of a dominant exotic invasive, Lespedeza cuneata in grassland restorations allows establishment of a more diverse native plant community, and (2) if control of the exotic and supplemental seed addition allows establishment of native species. A manipulative experiment tested the effects of herbicide treatments (five triclopyr and fluroxypyr formulations plus an untreated control) and seed addition (and unseeded control) on taxonomic and phylogenetic diversity, and community composition of restored grasslands in three sites over three years. We assessed response of L. cuneata through stem density counts, and response of the plant community through estimates of canopy cover. Herbicide treatments reduced the abundance of the exotic in the first field season leading to a less dispersed community composition compared with untreated controls, with the exotic regaining dominance by the third year. Supplemental seed addition did not provide extra resistance of the native community to reinvasion of the exotic. The communities were phylogenetically over-dispersed, but there was a short-term shift to lower phylogenetic diversity in response to herbicides consistent with a decrease in biotic filtering. Native plant communities in these grassland restorations were resilient to short-term reduction in abundance of a dominant invasive even though it was insufficient to provide an establishment window for native species establishment.

Spatial insurance in multi-trophic metacommunities

Metacommunity theory suggests that dispersal is a key driver of diversity and ecosystem functioning in changing environments. The capacity of dispersal to mitigate effects of environmental change might vary among trophic groups, potentially resulting in changes in trophic interactions and food web structure. In a mesocosm experiment, we compared the compositional response of bacteria, phyto‐ and zooplankton to a factorial manipulation of acidification and dispersal. We found that the buffering capacity of dispersal varied among trophic groups: dispersal alleviated the negative effect of acidification on phytoplankton diversity mid‐experiment, but had no effect on the diversity of zooplankton and bacteria. Likewise, trophic groups differed in whether dispersal facilitated compositional change. Dispersal accelerated changes in phytoplankton composition under acidification, possibly mediated by changes in trophic interactions, but had no effect on the composition of zooplankton and bacteria. Overall, our results suggest that the potential for spatial insurance can vary among trophic groups.

Seedling recruitment correlates with seed input across seed sizes: implications for coexistence

Understanding controls on recruitment is critical to predicting community assembly, diversity, and coexistence. Theory posits that at mean fecundity, recruitment of highly fecund small-seeded plants should be primarily microsite limited, which is indicated by a saturating recruitment function. In contrast, species that produce fewer large seeds are more likely to be seed-limited, which is characterized by a linear recruitment function. If these patterns hold in nature, seed predation that disproportionately affects larger-seeded species can limit their establishment. We tested these predictions by comparing recruitment functions among 16 co-occurring perennial forb species that vary by over two orders of magnitude in seed size. We also assessed how postdispersal seed predation by mice influenced recruitment. We added seeds at densities from zero to three times natural fecundity of each species to undisturbed plots and examined spatial variation in recruitment by conducting experiments across 10 grassland sites that varied in productivity and resource availability. Consistent across two replicated years, most species had linear recruitment functions across the range of added seed densities, indicative of seed-limited recruitment. Depending on year, the recruitment functions of only 19-37% of target species saturated near their average fecundity, and this was not associated with seed size. Recruitment was strongly inhibited by rodent seed predation for large-seeded species but not for smaller-seeded species. Proportional recruitment was more sensitive to spatial variation in recruitment conditions across sites for some small-seeded species than for large-seeded species. These results contradict the common belief that highly fecund small-seeded species suffer from microsite-limited recruitment. Rather, they imply that, at least episodically, recruitment can be strongly correlated to plant fecundity. However, proportional recruitment of small-seeded species was inhibited at productive sites to a greater extent than large-seeded species. Results also show that in a system where the dominant granivore prefers larger seeds, low-fecundity large-seeded species can suffer from even greater seed-limited recruitment than would occur in the absence of predators.

Experimental Testing of Dispersal Limitation in Soil Bacterial Communities with a Propagule Addition Approach

The role of dispersal in the assembly of microbial communities remains contentious. This study tested the importance of dispersal limitation for the structuring of local soil bacterial communities using an experimental approach of propagule addition. Microbes extracted from soil pooled from samples collected at 20 localities across ~ 400 km in a temperate steppe were added to microcosms of local soils at three sites; the microcosms were then incubated in situ for 3 months. We then assessed the composition and diversity of bacterial taxa in the soils using 16S rRNA gene amplicon sequencing. The addition of the regional microbial pool did not cause significant changes in the overall composition or diversity of the total bacterial community, although a very small number of individual taxa may have been affected by the addition treatment. Our results suggest a negligible role of dispersal limitation in structuring soil bacterial communities in our study area.

The distribution of plant consumption traits across habitat types and the patterns of fruit availability suggest a mechanism of coexistence of two sympatric frugivorous mammals

Understanding the mechanisms governing the coexistence of organisms is an important question in ecology, and providing potential solutions contributes to conservation science. In this study, we evaluated the contribution of several mechanisms to the coexistence of two sympatric frugivores, using western lowland gorillas (Gorilla gorilla gorilla) and central chimpanzees (Pan troglodytes troglodytes) in a tropical rainforest of southeast Cameroon as a model system. We collected great ape fecal samples to determine and classify fruit species consumed; we conducted great ape nest surveys to evaluate seasonal patterns of habitat use; and we collected botanical data to investigate the distribution of plant species across habitat types in relation to their "consumption traits" (which indicate whether plants are preferred or fallback for either gorilla, chimpanzee, or both). We found that patterns of habitat use varied seasonally for both gorillas and chimpanzees and that gorilla and chimpanzee preferred and fallback fruits differed. Also, the distribution of plant consumption traits was influenced by habitat type and matched accordingly with the patterns of habitat use by gorillas and chimpanzees. We show that neither habitat selection nor fruit preference alone can explain the coexistence of gorillas and chimpanzees, but that considering together the distribution of plant consumption traits of fruiting woody plants across habitats as well as the pattern of fruit availability may contribute to explaining coexistence. This supports the assumptions of niche theory with dominant and subordinate species in heterogeneous landscapes, whereby a species may prefer nesting in habitats where it is less subject to competitive exclusion and where food availability is higher. To our knowledge, our study is the first to investigate the contribution of plant consumption traits, seasonality, and habitat heterogeneity to enabling the coexistence of two sympatric frugivores.

OPEN RESEARCH BADGES

This article has earned an Open Data Badge for making publicly available the digitally-shareable data necessary to reproduce the reported results. The data is available at https://datadryad.org/resource/doi:10.5061/dryad.ms65f29.

Conservation-oriented restoration - a two for one method to restore both threatened species and their habitats

There is an urgent need for a new conservation approach as mere designation of protected areas, the primary approach to conserving biodiversity, revealed its low conservation efficiency and inability to cope with numerous challenges faced by nature in the Anthropocene. The paper discusses the new concept, which proposes that ecological restoration becomes an integral part of conservation planning and implementation, and is done using threatened plant species that are introduced not only into locations where they currently grow or grew in the recent past, but also into suitable locations within their potential distribution range. This new concept is called conservation-oriented restoration to distinguish it from the traditional restoration. Although the number of restoration projects focusing on recreation of once existing natural habitats is instantly growing, the majority of ecological restoration projects, in contrast to conservation-oriented restoration, have predominantly utilitarian goals, e.g. improvement or air quality, erosion control or soil replenishment. Conservation-oriented restoration should not be seen as an alternative either to the latter, or to the conservation dealing with particular threatened species (species-targeted conservation). These three conservation approaches, traditional ecological restoration, species-targeted conservation, and conservation-oriented restoration differ not only in broadly defined goals and attributes of their targets, but also in the types of ecosystems they are applicable to, and complement each other in combating global deterioration of the environment and biodiversity loss.

Chronosequence and direct observation approaches reveal complementary community dynamics in a novel ecosystem

Non-native, early-successional plants have been observed to maintain dominance for decades, particularly in semi-arid systems. Here, two approaches were used to detect potentially slow successional patterns in an invaded semi-arid system: chronosequence and direct observation. Plant communities in 25 shrub-steppe sites that represented a 50-year chronosequence of agricultural abandonment were monitored for 13 years. Each site contained a field abandoned from agriculture (ex-arable) and an adjacent never-tilled field. Ex-arable fields were dominated by short-lived, non-native plants. These ‘weedy’ communities had lower species richness, diversity and ground cover, and greater annual and forb cover than communities in never-tilled fields. Never-tilled fields were dominated by long-lived native plants. Across the chronosequence, plant community composition remained unchanged in both ex-arable and never-tilled fields. In contrast, 13 years of direct observation detected directional changes in plant community composition within each field type. Despite within-community changes in both field types during direct observation, there was little evidence that native plants were invading ex-arable fields or that non-native plants were invading never-tilled fields. The more-controlled, direct observation approach was more sensitive to changes in community composition, but the chronosequence approach suggested that these changes are unlikely to manifest over longer time periods, at least in part because of disturbances in the system. Results highlight the long-term consequences of soil disturbance and the difficulty of restoring native perennials in disturbed semi-arid systems.