1
|
Mouginot P, Luviano Aparicio N, Gourcilleau D, Latutrie M, Marin S, Hemptinne JL, Grunau C, Pujol B. Phenotypic Response to Light Versus Shade Associated with DNA Methylation Changes in Snapdragon Plants ( Antirrhinum majus). Genes (Basel) 2021; 12:227. [PMID: 33557416 PMCID: PMC7914928 DOI: 10.3390/genes12020227] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2020] [Revised: 01/27/2021] [Accepted: 01/27/2021] [Indexed: 01/17/2023] Open
Abstract
The phenotypic plasticity of plants in response to change in their light environment, and in particularly, to shade is a schoolbook example of ecologically relevant phenotypic plasticity with evolutionary adaptive implications. Epigenetic variation is known to potentially underlie plant phenotypic plasticity. Yet, little is known about its role in ecologically and evolutionary relevant mechanisms shaping the diversity of plant populations in nature. Here we used a reference-free reduced representation bisulfite sequencing method for non-model organisms (epiGBS) to investigate changes in DNA methylation patterns across the genome in snapdragon plants (Antirrhinum majus L.). We exposed plants to sunlight versus artificially induced shade in four highly inbred lines to exclude genetic confounding effects. Our results showed that phenotypic plasticity in response to light versus shade shaped vegetative traits. They also showed that DNA methylation patterns were modified under light versus shade, with a trend towards global effects over the genome but with large effects found on a restricted portion. We also detected the existence of a correlation between phenotypic and epigenetic variation that neither supported nor rejected its potential role in plasticity. While our findings imply epigenetic changes in response to light versus shade environments in snapdragon plants, whether these changes are directly involved in the phenotypic plastic response of plants remains to be investigated. Our approach contributed to this new finding but illustrates the limits in terms of sample size and statistical power of population epigenetic approaches in non-model organisms. Pushing this boundary will be necessary before the relationship between environmentally induced epigenetic changes and phenotypic plasticity is clarified for ecologically relevant mechanisms with evolutionary implications.
Collapse
Affiliation(s)
- Pierick Mouginot
- PSL Université Paris: EPHE-UPVD-CNRS, USR 3278 CRIOBE, Université de Perpignan, 52 Avenue Paul Alduy, CEDEX 9, 66860 Perpignan, France; (P.M.); (M.L.); (S.M.)
| | - Nelia Luviano Aparicio
- Université Montpellier, CNRS, IFREMER, UPVD, Interactions Hôtes Pathogènes Environnements (IHPE), 66860 Perpignan, France; (N.L.A.); (C.G.)
| | - Delphine Gourcilleau
- Laboratoire Évolution & Diversité Biologique (EDB, UMR 5174), Université Fédérale de Toulouse Midi-Pyrénées, CNRS, IRD, UPS, 118 route de Narbonne, Bat 4R1, CEDEX 9, 31062 Toulouse, France; (D.G.); (J.-L.H.)
| | - Mathieu Latutrie
- PSL Université Paris: EPHE-UPVD-CNRS, USR 3278 CRIOBE, Université de Perpignan, 52 Avenue Paul Alduy, CEDEX 9, 66860 Perpignan, France; (P.M.); (M.L.); (S.M.)
| | - Sara Marin
- PSL Université Paris: EPHE-UPVD-CNRS, USR 3278 CRIOBE, Université de Perpignan, 52 Avenue Paul Alduy, CEDEX 9, 66860 Perpignan, France; (P.M.); (M.L.); (S.M.)
| | - Jean-Louis Hemptinne
- Laboratoire Évolution & Diversité Biologique (EDB, UMR 5174), Université Fédérale de Toulouse Midi-Pyrénées, CNRS, IRD, UPS, 118 route de Narbonne, Bat 4R1, CEDEX 9, 31062 Toulouse, France; (D.G.); (J.-L.H.)
| | - Christoph Grunau
- Université Montpellier, CNRS, IFREMER, UPVD, Interactions Hôtes Pathogènes Environnements (IHPE), 66860 Perpignan, France; (N.L.A.); (C.G.)
| | - Benoit Pujol
- PSL Université Paris: EPHE-UPVD-CNRS, USR 3278 CRIOBE, Université de Perpignan, 52 Avenue Paul Alduy, CEDEX 9, 66860 Perpignan, France; (P.M.); (M.L.); (S.M.)
| |
Collapse
|
2
|
Rewicz A, Myśliwy M, Adamowski W, Podlasiński M, Bomanowska A. Seed morphology and sculpture of invasive Impatiens capensis Meerb. from different habitats. PeerJ 2020; 8:e10156. [PMID: 33240597 PMCID: PMC7680054 DOI: 10.7717/peerj.10156] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2020] [Accepted: 09/21/2020] [Indexed: 11/20/2022] Open
Abstract
Impatiens capensis is an annual plant native to eastern North America that is currently spreading across Europe. In Poland, due to this plant's rapid spread in the secondary range and high competitiveness in relation to native species, it is considered a locally invasive species. The microstructure of seeds is an important tool for solving various taxonomic problems and also provides data useful for determining the impact of various environmental factors on the phenotypic variability of species. This issue is particularly important in regard to invasive species which occupy a wide range of habitats in the invaded range. There are few reports on seed size and thus far no descriptions of the seed ultrastructure of I. capensis in the analyzed literature. We present new data on the seed morphology of I. capensis growing in different habitats and conditions in the secondary range of the species. The studied populations differed significantly in each of the investigated traits (seed length, width, circumference, area, roundness, and mass). Our findings showed that anthropogenic disturbances in habitats and some soil parameters (presence of carbonates, potassium, loose sand, and moisture) were statistically significant with various seed sizes and morphology in the studied populations of I. capensis. Moreover, our studies showed maximum seed length (5.74 mm) and width (3.21 mm) exceeding those values given in the available literature. For the first time, we also provide a detailed SEM study of the ultrastructure of the seed coat of I. capensis. There are two types of epidermal cells on the seeds: (a) between the ribs (elongated with straight anticlinal walls, slightly concave outer periclinal walls, and micropapillate secondary sculpture on the edges with anticyclic walls), and (b) on the ribs (isodiametric cells with straight anticlinal walls and concave outer periclinal walls). Unlike the variability of size and weight of seeds, the coat ornamentation has turned out to be a steady feature within the studied secondary range of I. capensis.
Collapse
Affiliation(s)
- Agnieszka Rewicz
- Department of Geobotany and Plant Ecology, University of Lodz, Lodz, Poland
| | - Monika Myśliwy
- Institute of Marine and Environmental Sciences, University of Szczecin, Szczecin, Poland
| | - Wojciech Adamowski
- Białowieża Geobotanical Station, Faculty of Biology, University of Warsaw, Białowieża, Poland
| | - Marek Podlasiński
- Department of Environmental Management, West Pomeranian University of Technology, Szczecin, Poland
| | - Anna Bomanowska
- Department of Geobotany and Plant Ecology, University of Lodz, Lodz, Poland
| |
Collapse
|
3
|
Zhang N, van Westreenen A, Anten NPR, Evers JB, Marcelis LFM. Disentangling the effects of photosynthetically active radiation and red to far-red ratio on plant photosynthesis under canopy shading: a simulation study using a functional-structural plant model. ANNALS OF BOTANY 2020; 126:635-646. [PMID: 31793625 PMCID: PMC7489061 DOI: 10.1093/aob/mcz197] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/06/2019] [Accepted: 12/02/2019] [Indexed: 05/06/2023]
Abstract
BACKGROUND AND AIMS Shading by an overhead canopy (i.e. canopy shading) entails simultaneous changes in both photosynthetically active radiation (PAR) and red to far-red ratio (R:FR). As plant responses to PAR (e.g. changes in leaf photosynthesis) are different from responses to R:FR (e.g. changes in plant architecture), and these responses occur at both organ and plant levels, understanding plant photosynthesis responses to canopy shading needs separate analysis of responses to reductions in PAR and R:FR at different levels. METHODS In a glasshouse experiment we subjected plants of woody perennial rose (Rosa hybrida) to different light treatments, and so separately quantified the effects of reductions in PAR and R:FR on leaf photosynthetic traits and plant architectural traits. Using a functional-structural plant model, we separately quantified the effects of responses in these traits on plant photosynthesis, and evaluated the relative importance of changes of individual traits for plant photosynthesis under mild and heavy shading caused by virtual overhead canopies. KEY RESULTS Model simulations showed that the individual trait responses to canopy shading could have positive and negative effects on plant photosynthesis. Under mild canopy shading, trait responses to reduced R:FR on photosynthesis were generally negative and with a larger magnitude than effects of responses to reduced PAR. Conversely, under heavy canopy shading, the positive effects of trait responses to reduced PAR became dominant. The combined effects of low-R:FR responses and low-PAR responses on plant photosynthesis were not equal to the sum of the separate effects, indicating interactions between individual trait responses. CONCLUSIONS Our simulation results indicate that under canopy shading, the relative importance of plant responses to PAR and R:FR for plant photosynthesis changes with shade levels. This suggests that the adaptive significance of plant plasticity responses to one shading factor depends on plant responses to the other.
Collapse
Affiliation(s)
- Ningyi Zhang
- Horticulture and Product Physiology Group, Department of Plant Sciences, Wageningen University, 6700 AA Wageningen, The Netherlands
- Centre for Crop Systems Analysis, Department of Plant Sciences, Wageningen University, 6700 AK Wageningen, The Netherlands
- For correspondence. E-mail: ,
| | - Arian van Westreenen
- Horticulture and Product Physiology Group, Department of Plant Sciences, Wageningen University, 6700 AA Wageningen, The Netherlands
- Centre for Crop Systems Analysis, Department of Plant Sciences, Wageningen University, 6700 AK Wageningen, The Netherlands
| | - Niels P R Anten
- Centre for Crop Systems Analysis, Department of Plant Sciences, Wageningen University, 6700 AK Wageningen, The Netherlands
| | - Jochem B Evers
- Centre for Crop Systems Analysis, Department of Plant Sciences, Wageningen University, 6700 AK Wageningen, The Netherlands
| | - Leo F M Marcelis
- Horticulture and Product Physiology Group, Department of Plant Sciences, Wageningen University, 6700 AA Wageningen, The Netherlands
- For correspondence. E-mail: ,
| |
Collapse
|
4
|
Gourcilleau D, Mousset M, Latutrie M, Marin S, Delaunay A, Maury S, Pujol B. Assessing Global DNA Methylation Changes Associated with Plasticity in Seven Highly Inbred Lines of Snapdragon Plants ( Antirrhinum majus). Genes (Basel) 2019; 10:E256. [PMID: 30925802 PMCID: PMC6523709 DOI: 10.3390/genes10040256] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2019] [Revised: 03/14/2019] [Accepted: 03/21/2019] [Indexed: 11/16/2022] Open
Abstract
Genetic and epigenetic variations are commonly known to underlie phenotypic plastic responses to environmental cues. However, the role of epigenetic variation in plastic responses harboring ecological significance in nature remains to be assessed. The shade avoidance response (SAR) of plants is one of the most prevalent examples of phenotypic plasticity. It is a phenotypic syndrome including stem elongation and multiple other traits. Its ecological significance is widely acknowledged, and it can be adaptive in the presence of competition for light. Underlying genes and pathways were identified, but evidence for its epigenetic basis remains scarce. We used a proven and accessible approach at the population level and compared global DNA methylation between plants exposed to regular light and three different magnitudes of shade in seven highly inbred lines of snapdragon plants (Antirrhinum majus) grown in a greenhouse. Our results brought evidence of a strong SAR syndrome for which magnitude did not vary between lines. They also brought evidence that its magnitude was not associated with the global DNA methylation percentage for five of the six traits under study. The magnitude of stem elongation was significantly associated with global DNA demethylation. We discuss the limits of this approach and why caution must be taken with such results. In-depth approaches at the DNA sequence level will be necessary to better understand the molecular basis of the SAR syndrome.
Collapse
Affiliation(s)
- Delphine Gourcilleau
- Laboratoire Évolution & Diversité Biologique (EDB, UMR 5174), Université Fédérale de Toulouse Midi-Pyrénées, CNRS, IRD, UPS. 118 route de Narbonne, Bat 4R1, CEDEX 9, 31062 Toulouse, France.
| | - Mathilde Mousset
- Laboratoire Évolution & Diversité Biologique (EDB, UMR 5174), Université Fédérale de Toulouse Midi-Pyrénées, CNRS, IRD, UPS. 118 route de Narbonne, Bat 4R1, CEDEX 9, 31062 Toulouse, France.
| | - Mathieu Latutrie
- Laboratoire Évolution & Diversité Biologique (EDB, UMR 5174), Université Fédérale de Toulouse Midi-Pyrénées, CNRS, IRD, UPS. 118 route de Narbonne, Bat 4R1, CEDEX 9, 31062 Toulouse, France.
- PSL Université Paris: EPHE-UPVD-CNRS, USR 3278 CRIOBE, Université de Perpignan, 52 Avenue Paul Alduy, CEDEX 9, 66860 Perpignan, France.
| | - Sara Marin
- Laboratoire Évolution & Diversité Biologique (EDB, UMR 5174), Université Fédérale de Toulouse Midi-Pyrénées, CNRS, IRD, UPS. 118 route de Narbonne, Bat 4R1, CEDEX 9, 31062 Toulouse, France.
- PSL Université Paris: EPHE-UPVD-CNRS, USR 3278 CRIOBE, Université de Perpignan, 52 Avenue Paul Alduy, CEDEX 9, 66860 Perpignan, France.
| | - Alain Delaunay
- Laboratoire de Biologie des Ligneux et des Grandes Cultures (LBLGC, EA 1207 USC 1328 INRA), Université Orléans, 45067 Orléans, France.
| | - Stéphane Maury
- Laboratoire de Biologie des Ligneux et des Grandes Cultures (LBLGC, EA 1207 USC 1328 INRA), Université Orléans, 45067 Orléans, France.
| | - Benoît Pujol
- Laboratoire Évolution & Diversité Biologique (EDB, UMR 5174), Université Fédérale de Toulouse Midi-Pyrénées, CNRS, IRD, UPS. 118 route de Narbonne, Bat 4R1, CEDEX 9, 31062 Toulouse, France.
- PSL Université Paris: EPHE-UPVD-CNRS, USR 3278 CRIOBE, Université de Perpignan, 52 Avenue Paul Alduy, CEDEX 9, 66860 Perpignan, France.
| |
Collapse
|
5
|
Yuan C, Ahmad S, Cheng T, Wang J, Pan H, Zhao L, Zhang Q. Red to Far-Red Light Ratio Modulates Hormonal and Genetic Control of Axillary bud Outgrowth in Chrysanthemum ( Dendranthema grandiflorum 'Jinba'). Int J Mol Sci 2018; 19:ijms19061590. [PMID: 29843424 PMCID: PMC6032274 DOI: 10.3390/ijms19061590] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2018] [Revised: 05/22/2018] [Accepted: 05/23/2018] [Indexed: 11/16/2022] Open
Abstract
Single-flower cut Chrysanthemum (Dendranthema grandiflorum 'Jinba') holds a unique status in global floriculture industry. However, the extensive axillary bud outgrowth presents a major drawback. Shade is an environment cue that inhibits shoot branching. Present study was aimed at investigating the effect of ratio of red to far-red light (R:FR) in regulating the lateral bud outgrowth of Chrysanthemum and the detailed mechanism. Results showed that the fate of axillary buds at specific positions in stem exhibited difference in response to R:FR. Decreasing R:FR resulted in elevation of abscisic acid (ABA) accumulation in axillary buds. Expression of ABA, indole-3-acetic acid (IAA) and strigolactones (SL) -related metabolism and signal transduction genes was significantly changed in response to low R:FR. In addition, low R:FR caused the re-distribution of sucrose across the whole plant, driving more sucrose towards bottom buds. Our results indicate that low R:FR not always inhibits bud outgrowth, rather its influence depends on the bud position in the stem. ABA, SL and auxin pathways were involved in the process. Interestingly, sucrose also appears to be involved in the process which is necessary to pay attention in the further studies. The present study also lays the foundation for developing methods to regulate axillary bud outgrowth in Chrysanthemum.
Collapse
Affiliation(s)
- Cunquan Yuan
- Beijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of Ministry of Education, School of Landscape Architecture, Beijing Forestry University, Beijing 100083, China.
| | - Sagheer Ahmad
- Beijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of Ministry of Education, School of Landscape Architecture, Beijing Forestry University, Beijing 100083, China.
| | - Tangren Cheng
- Beijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of Ministry of Education, School of Landscape Architecture, Beijing Forestry University, Beijing 100083, China.
| | - Jia Wang
- Beijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of Ministry of Education, School of Landscape Architecture, Beijing Forestry University, Beijing 100083, China.
| | - Huitang Pan
- Beijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of Ministry of Education, School of Landscape Architecture, Beijing Forestry University, Beijing 100083, China.
| | - Liangjun Zhao
- Department of Ornamental Horticulture, China Agricultural University, Beijing 100193, China.
| | - Qixiang Zhang
- Beijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants of Ministry of Education, School of Landscape Architecture, Beijing Forestry University, Beijing 100083, China.
| |
Collapse
|
6
|
Ossler JN, Heath KD. Shared Genes but Not Shared Genetic Variation: Legume Colonization by Two Belowground Symbionts. Am Nat 2018. [DOI: 10.1086/695829] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
|
7
|
Siren J, Ovaskainen O, Merilä J. Structure and stability of genetic variance-covariance matrices: A Bayesian sparse factor analysis of transcriptional variation in the three-spined stickleback. Mol Ecol 2017; 26:5099-5113. [PMID: 28746754 DOI: 10.1111/mec.14265] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2016] [Accepted: 07/06/2017] [Indexed: 11/30/2022]
Abstract
The genetic variance-covariance matrix (G) is a quantity of central importance in evolutionary biology due to its influence on the rate and direction of multivariate evolution. However, the predictive power of empirically estimated G-matrices is limited for two reasons. First, phenotypes are high-dimensional, whereas traditional statistical methods are tuned to estimate and analyse low-dimensional matrices. Second, the stability of G to environmental effects and over time remains poorly understood. Using Bayesian sparse factor analysis (BSFG) designed to estimate high-dimensional G-matrices, we analysed levels variation and covariation in 10,527 expressed genes in a large (n = 563) half-sib breeding design of three-spined sticklebacks subject to two temperature treatments. We found significant differences in the structure of G between the treatments: heritabilities and evolvabilities were higher in the warm than in the low-temperature treatment, suggesting more and faster opportunity to evolve in warm (stressful) conditions. Furthermore, comparison of G and its phenotypic equivalent P revealed the latter is a poor substitute of the former. Most strikingly, the results suggest that the expected impact of G on evolvability-as well as the similarity among G-matrices-may depend strongly on the number of traits included into analyses. In our results, the inclusion of only few traits in the analyses leads to underestimation in the differences between the G-matrices and their predicted impacts on evolution. While the results highlight the challenges involved in estimating G, they also illustrate that by enabling the estimation of large G-matrices, the BSFG method can improve predicted evolutionary responses to selection.
Collapse
Affiliation(s)
- J Siren
- Metapopulation Research Centre, Department of Biosciences, University of Helsinki, Helsinki, Finland
| | - O Ovaskainen
- Metapopulation Research Centre, Department of Biosciences, University of Helsinki, Helsinki, Finland.,Centre for Biodiversity Dynamics, Department of Biology, Norwegian University of Science and Technology, Trondheim, Norway
| | - J Merilä
- Ecological Genetics Research Unit, Department of Biosciences, University of Helsinki, Helsinki, Finland
| |
Collapse
|
8
|
Gibson AL, Espeland EK, Wagner V, Nelson CR. Can local adaptation research in plants inform selection of native plant materials? An analysis of experimental methodologies. Evol Appl 2016; 9:1219-1228. [PMID: 27877201 PMCID: PMC5108214 DOI: 10.1111/eva.12379] [Citation(s) in RCA: 54] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2015] [Accepted: 02/27/2016] [Indexed: 12/03/2022] Open
Abstract
Local adaptation is used as a criterion to select plant materials that will display high fitness in new environments. A large body of research has explored local adaptation in plants, however, to what extent findings can inform management decisions has not been formally evaluated. We assessed local adaptation literature for six key experimental methodologies that have the greatest effect on the application of research to selecting plant materials for natural resource management: experimental environment, response variables, maternal effects, intraspecific variation, selective agents, and spatial and temporal variability. We found that less than half of experiments used reciprocal transplants or natural field conditions, which are both informative for revegetation and restoration. Population growth rate was rarely (5%) assessed, and most studies measured only single generations (96%) and ran for less than a year. Emergence and establishment are limiting factors in successful revegetation and restoration, but the majority of studies measured later life‐history stages (66%). Additionally, most studies included limited replication at the population and habitat levels and tested response to single abiotic selective factors (66%). Local adaptation research should be cautiously applied to management; future research could use alternative methodologies to allow managers to directly apply findings.
Collapse
Affiliation(s)
- Alexis L Gibson
- College of Forestry and Conservation University of Montana Missoula MT USA
| | | | - Viktoria Wagner
- College of Forestry and Conservation University of Montana Missoula MT USA; Present address: Department of Botany and Zoology Masaryk University Kotlářská 2CZ-611 37 Brno Czech Republic
| | - Cara R Nelson
- College of Forestry and Conservation University of Montana Missoula MT USA
| |
Collapse
|
9
|
Sikkink KL, Reynolds RM, Cresko WA, Phillips PC. Environmentally induced changes in correlated responses to selection reveal variable pleiotropy across a complex genetic network. Evolution 2015; 69:1128-42. [PMID: 25809411 PMCID: PMC5523853 DOI: 10.1111/evo.12651] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2014] [Accepted: 03/06/2015] [Indexed: 12/28/2022]
Abstract
Selection in novel environments can lead to a coordinated evolutionary response across a suite of characters. Environmental conditions can also potentially induce changes in the genetic architecture of complex traits, which in turn could alter the pattern of the multivariate response to selection. We describe a factorial selection experiment using the nematode Caenorhabditis remanei in which two different stress-related phenotypes (heat and oxidative stress resistance) were selected under three different environmental conditions. The pattern of covariation in the evolutionary response between phenotypes or across environments differed depending on the environment in which selection occurred, including asymmetrical responses to selection in some cases. These results indicate that variation in pleiotropy across the stress response network is highly sensitive to the external environment. Our findings highlight the complexity of the interaction between genes and environment that influences the ability of organisms to acclimate to novel environments. They also make clear the need to identify the underlying genetic basis of genetic correlations in order understand how patterns of pleiotropy are distributed across complex genetic networks.
Collapse
Affiliation(s)
- Kristin L Sikkink
- Institute of Ecology and Evolution, University of Oregon, Eugene, Oregon, 97403
- Department of Ecology, Evolution and Behavior, University of Minnesota, Minneapolis, Minnesota, 55108
| | - Rose M Reynolds
- Institute of Ecology and Evolution, University of Oregon, Eugene, Oregon, 97403
- Department of Biology, William Jewell College, Liberty, Missouri, 64068
| | - William A Cresko
- Institute of Ecology and Evolution, University of Oregon, Eugene, Oregon, 97403.
| | - Patrick C Phillips
- Institute of Ecology and Evolution, University of Oregon, Eugene, Oregon, 97403.
| |
Collapse
|
10
|
Dechaine JM, Brock MT, Iniguez-Luy FL, Weinig C. Quantitative trait loci × environment interactions for plant morphology vary over ontogeny in Brassica rapa. THE NEW PHYTOLOGIST 2014; 201:657-669. [PMID: 26012723 DOI: 10.1111/nph.12520] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/13/2013] [Accepted: 08/15/2013] [Indexed: 05/16/2023]
Abstract
Growth in plants occurs via the addition of repeating modules, suggesting that the genetic architecture of similar subunits may vary between earlier- and later-developing modules. These complex environment × ontogeny interactions are not well elucidated, as studies examining quantitative trait loci (QTLs) expression over ontogeny have not included multiple environments. Here, we characterized the genetic architecture of vegetative traits and onset of reproduction over ontogeny in recombinant inbred lines of Brassica rapa in the field and glasshouse. The magnitude of genetic variation in plasticity of seedling internodes was greater than in those produced later in ontogeny. We correspondingly detected that QTLs for seedling internode length were environment-specific, whereas later in ontogeny the majority of QTLs affected internode lengths in all treatments. The relationship between internode traits and onset of reproduction varied with environment and ontogenetic stage. This relationship was observed only in the glasshouse environment and was largely attributable to one environment-specific QTL. Our results provide the first evidence of a QTL × environment × ontogeny interaction, and provide QTL resolution for differences between early- and later-stage plasticity for stem elongation. These results also suggest potential constraints on morphological evolution in early vs later modules as a result of associations with reproductive timing.
Collapse
Affiliation(s)
- Jennifer M Dechaine
- Department of Biological Sciences, Central Washington University, Ellensburg, WA, 98926, USA
| | - Marcus T Brock
- Department of Botany, University of Wyoming, Laramie, WY, 82071, USA
| | - Federico L Iniguez-Luy
- Agri-Aquaculture Nutritional Genomic Center, Genetic and Bioinformatics Unit, Instituto de Investigaciones Agropecuarias-Carillanca, Codigo Postal, 4780000, Temuco, Chile
| | - Cynthia Weinig
- Department of Botany, University of Wyoming, Laramie, WY, 82071, USA
| |
Collapse
|
11
|
Ferrer A, Dorn S, Mazzi D. Cross-generational effects of temperature on flight performance, and associated life-history traits in an insect. J Evol Biol 2013; 26:2321-30. [DOI: 10.1111/jeb.12218] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2012] [Revised: 06/24/2013] [Accepted: 06/24/2013] [Indexed: 11/26/2022]
Affiliation(s)
- A. Ferrer
- ETH Zurich; Institute of Agricultural Sciences, Applied Entomology; Zurich Switzerland
| | - S. Dorn
- ETH Zurich; Institute of Agricultural Sciences, Applied Entomology; Zurich Switzerland
| | - D. Mazzi
- ETH Zurich; Institute of Agricultural Sciences, Applied Entomology; Zurich Switzerland
| |
Collapse
|
12
|
The evolution of quantitative traits in complex environments. Heredity (Edinb) 2013; 112:4-12. [PMID: 23612691 DOI: 10.1038/hdy.2013.33] [Citation(s) in RCA: 68] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2012] [Revised: 02/12/2013] [Accepted: 03/14/2013] [Indexed: 02/01/2023] Open
Abstract
Species inhabit complex environments and respond to selection imposed by numerous abiotic and biotic conditions that vary in both space and time. Environmental heterogeneity strongly influences trait evolution and patterns of adaptive population differentiation. For example, heterogeneity can favor local adaptation, or can promote the evolution of plastic genotypes that alter their phenotypes based on the conditions they encounter. Different abiotic and biotic agents of selection can act synergistically to either accelerate or constrain trait evolution. The environmental context has profound effects on quantitative genetic parameters. For instance, heritabilities measured in controlled conditions often exceed those measured in the field; thus, laboratory experiments could overestimate the potential for a population to respond to selection. Nevertheless, most studies of the genetic basis of ecologically relevant traits are conducted in simplified laboratory environments, which do not reflect the complexity of nature. Here, we advocate for manipulative field experiments in the native ranges of plant species that differ in mating system, life-history strategy and growth form. Field studies are vital to evaluate the roles of disparate agents of selection, to elucidate the targets of selection and to develop a nuanced perspective on the evolution of quantitative traits. Quantitative genetics field studies will also shed light on the potential for natural populations to adapt to novel climates in highly fragmented landscapes. Drawing from our experience with the ecological model system Boechera (Brassicaceae), we discuss advancements possible through dedicated field studies, highlight future research directions and examine the challenges associated with field studies.
Collapse
|
13
|
Scheiner SM, Barfield M, Holt RD. The genetics of phenotypic plasticity. XI. Joint evolution of plasticity and dispersal rate. Ecol Evol 2012; 2:2027-39. [PMID: 22957203 PMCID: PMC3434005 DOI: 10.1002/ece3.327] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2012] [Revised: 06/15/2012] [Accepted: 06/18/2012] [Indexed: 11/10/2022] Open
Abstract
In a spatially heterogeneous environment, the rate at which individuals move among habitats affects whether selection favors phenotypic plasticity or genetic differentiation, with high dispersal rates favoring trait plasticity. Until now, in theoretical explorations of plasticity evolution, dispersal rate has been treated as a fixed, albeit probabilistic, characteristic of a population, raising the question of what happens when the propensity to disperse and trait plasticity are allowed to evolve jointly. We examined the effects of their joint evolution on selection for plasticity using an individual-based computer simulation model. In the model, the environment consisted of a linear gradient of 50 demes with dispersal occurring either before or after selection. Individuals consisted of loci whose phenotypic expression either are affected by the environment (plastic) or are not affected (nonplastic), plus a locus determining the propensity to disperse. When dispersal rate and trait plasticity evolve jointly, the system tends to dichotomous outcomes of either high trait plasticity and high dispersal, or low trait plasticity and low dispersal. The outcome strongly depended on starting conditions, with high trait plasticity and dispersal favored when the system started at high values for either trait plasticity or dispersal rate (or both). Adding a cost of plasticity tended to drive the system to genetic differentiation, although this effect also depended on initial conditions. Genetic linkage between trait plasticity loci and dispersal loci further enhanced this strong dichotomy in evolutionary outcomes. All of these effects depended on organismal life history pattern, and in particular whether selection occurred before or after dispersal. These results can explain why adaptive trait plasticity is less common than might be expected.
Collapse
|
14
|
von Wettberg EJB, Stinchcombe JR, Schmitt J. Early developmental responses to seedling environment modulate later plasticity to light spectral quality. PLoS One 2012; 7:e34121. [PMID: 22479538 PMCID: PMC3316606 DOI: 10.1371/journal.pone.0034121] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2011] [Accepted: 02/22/2012] [Indexed: 01/22/2023] Open
Abstract
Correlations between developmentally plastic traits may constrain the joint evolution of traits. In plants, both seedling de-etiolation and shade avoidance elongation responses to crowding and foliage shade are mediated by partially overlapping developmental pathways, suggesting the possibility of pleiotropic constraints. To test for such constraints, we exposed inbred lines of Impatiens capensis to factorial combinations of leaf litter (which affects de-etiolation) and simulated foliage shade (which affects phytochrome-mediated shade avoidance). Increased elongation of hypocotyls caused by leaf litter phenotypically enhanced subsequent elongation of the first internode in response to low red∶far red (R∶FR). Trait expression was correlated across litter and shade conditions, suggesting that phenotypic effects of early plasticity on later plasticity may affect variation in elongation traits available to selection in different light environments.
Collapse
Affiliation(s)
- Eric J B von Wettberg
- Biological Sciences, Florida International University, Miami, Florida, United States of America.
| | | | | |
Collapse
|
15
|
Huber H, von Wettberg EJ, Aguilera A, Schmitt J. Testing mechanisms and context dependence of costs of plastic shade avoidance responses in Impatiens capensis (Balsaminaceae). AMERICAN JOURNAL OF BOTANY 2011; 98:1602-1612. [PMID: 21940813 DOI: 10.3732/ajb.1000439] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
PREMISE OF THE STUDY Many plant species elongate their shoots in response to neighbor proximity and neighbor height. Although these plastic responses may be beneficial in terms of enhancing light interception, they also may have costs in terms of increased risk of mechanical failure (i.e., lodging or breaking) because of thinner stems. This trade-off between light acquisition and stability may shape the evolution of plastic elongation responses to foliage shade. METHODS In a field experiment manipulating elongation phenotypes and densities, we tested two hypotheses. We predicted that the risks of mechanical failure depend on plastic elongation and/or on characteristics of the immediate neighborhood, such as density and neighbor height. Further, we predicted that plants that fail mechanically would have reduced fitness. KEY RESULTS Mechanical failure was earlier and more frequent at high density and showed a complex interaction with neighborhood characteristics such as relative height of the neighbors and the expression of early plasticity. Plants that broke earlier had shorter lifespan and lower reproductive output. CONCLUSIONS Our results show that depending on the height and density of the group, plastic elongation responses can remain advantageous despite costs of increased risk of mechanical failure of the taller stems, as mechanical failure was not associated with strong costs in terms of reduced lifespan or seed production. The overall benefits of elongation outweigh the costs resulting in selection for elongation at the population level.
Collapse
Affiliation(s)
- Heidrun Huber
- Department of Ecology and Evolutionary Biology, Brown University, Providence, Rhode Island, USA.
| | | | | | | |
Collapse
|
16
|
Stinchcombe JR, Izem R, Heschel MS, McGoey BV, Schmitt J. Across-environment genetic correlations and the frequency of selective environments shape the evolutionary dynamics of growth rate in Impatiens capensis. Evolution 2010; 64:2887-903. [PMID: 20662920 DOI: 10.1111/j.1558-5646.2010.01060.x] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Trade-offs can exist within and across environments, and constrain evolutionary trajectories. To examine the effects of competition and resource availability on trade-offs, we grew individuals of recombinant inbred lines of Impatiens capensis in a factorial combination of five densities with two light environments (full light and neutral shade) and used a Bayesian logistic growth analysis to estimate intrinsic growth rates. To estimate across-environment constraints, we developed a variance decomposition approach to principal components analysis, which accounted for sample size, model-fitting, and within-RIL variation prior to eigenanalysis. We detected negative across-environment genetic covariances in intrinsic growth rates, although only under full-light. To evaluate the potential importance of these covariances, we surveyed natural populations of I. capensis to measure the frequency of different density environments across space and time. We combined our empirical estimates of across-environment genetic variance-covariance matrices and frequency of selective environments with hypothetical (yet realistic) selection gradients to project evolutionary responses in multiple density environments. Selection in common environments can lead to correlated responses to selection in rare environments that oppose and counteract direct selection in those rare environments. Our results highlight the importance of considering both the frequency of selective environments and the across-environment genetic covariances in traits simultaneously.
Collapse
Affiliation(s)
- John R Stinchcombe
- Department of Ecology & Evolutionary Biology, University of Toronto, Toronto, Ontario, Canada.
| | | | | | | | | |
Collapse
|
17
|
von Wettberg EJ, Remington DL, Schmitt J. Partitioning adaptive differentiation across a patchy landscape: shade avoidance traits in impatiens capensis. Evolution 2007; 62:654-67. [PMID: 18081714 DOI: 10.1111/j.1558-5646.2007.00309.x] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Adaptation to different habitat types across a patchy landscape may either arise independently in each patch or occur due to repeated colonization of each patch by the same specialized genotype. We tested whether open- and closed-canopy forms of Impatiens capensis, an herbaceous annual plant of eastern North America, have evolved repeatedly by comparing hierarchical measures of F(ST) estimated from AFLPs to morphological differentiation measured by Q(ST) for five pairs of populations found in open and closed habitats in five New England regions. Morphological differentiation between habitats (Q(HT)) in elongation traits was greater than marker divergence (F(HT)), suggesting adaptive differentiation. Genotypes from open- and closed-canopy habitats differed in shade avoidance traits in several population pairs, whereas patterns of AFLP differentiation suggest this differentiation does not have a single origin. These results suggest that open- and closed-canopy habitats present different selective pressures, but that the outcome of diversifying selection may differ depending on specific closed- and open-canopy habitats and on starting genetic variation. Hierarchical partitioning of F(ST) and Q(ST) makes it possible to distinguish global stabilizing selection on traits across a landscape from diversifying selection between habitat types within regions.
Collapse
Affiliation(s)
- Eric J von Wettberg
- Brown University, Ecology and Evolutionary Biology, Providence, Rhode Island 02912, USA.
| | | | | |
Collapse
|
18
|
Gardner KM, Latta RG. Shared quantitative trait loci underlying the genetic correlation between continuous traits. Mol Ecol 2007; 16:4195-209. [PMID: 17850272 DOI: 10.1111/j.1365-294x.2007.03499.x] [Citation(s) in RCA: 74] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Abstract
We review genetic correlations among quantitative traits in light of their underlying quantitative trait loci (QTL). We derive an expectation of genetic correlation from the effects of underlying loci and test whether published genetic correlations can be explained by the QTL underlying the traits. While genetically correlated traits shared more QTL (33%) on average than uncorrelated traits (11%), the actual number of shared QTL shared was small. QTL usually predicted the sign of the correlation with good accuracy, but the quantitative prediction was poor. Approximately 25% of trait pairs in the data set had at least one QTL with antagonistic effects. Yet a significant minority (20%) of such trait pairs have net positive genetic correlations due to such antagonistic QTL 'hidden' within positive genetic correlations. We review the evidence on whether shared QTL represent single pleiotropic loci or closely linked monotropic genes, and argue that strict pleiotropy can be viewed as one end of a continuum of recombination rates where r=0. QTL studies of genetic correlation will likely be insufficient to predict evolutionary trajectories over long time spans in large panmictic populations, but will provide important insights into the trade-offs involved in population and species divergence.
Collapse
Affiliation(s)
- Kyle M Gardner
- Department of Biology, Dalhousie University, 1355 Oxford Street, Halifax, Nova Scotia, Canada B3H 4J1
| | | |
Collapse
|
19
|
Brock MT, Tiffin P, Weinig C. Sequence diversity and haplotype associations with phenotypic responses to crowding: GIGANTEA affects fruit set in Arabidopsis thaliana. Mol Ecol 2007; 16:3050-62. [PMID: 17614917 DOI: 10.1111/j.1365-294x.2007.03298.x] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Identifying the molecular genetic basis of intraspecific variation in quantitative traits promises to provide novel insight into their evolutionary history as well as genetic mechanisms of adaptation. In an attempt to identify genes responsible for natural variation in competitive responses in Arabidopsis thaliana, we examined DNA sequence diversity at seven loci previously identified as members of the phytochrome B signalling network. For one gene, GIGANTEA (GI), we detected significant haplotype structure. To test for GI haplogroup-phenotype associations, we genotyped 161 A. thaliana accessions at GI and censused the same accessions for total fruit set and the expression of three phenotypic traits (days to flowering, petiole length, and inflorescence height) in a greenhouse experiment where plants were grown in crowded and uncrowded environments. We detected a significant association between GI and total fruit set that resulted in a 14% difference in average fruit set among GI haplogroups. Given that fruit set is an important component of fitness in this species and given the magnitude of the effect, the question arises as to how variation at this locus is maintained. Our observation of frequent and significant epistasis between GI and background single nucleotide polymorphisms (SNP), where the fitness ranking of the GI allele either reverses or does not differ depending on the allele at the interacting SNP, suggests that epistatic selection may actively maintain or at least slow the loss of variation at GI. This result is particularly noteworthy in the light of the ongoing debate regarding the genetic underpinnings of phenotypic evolution and recent observations that epistasis for phenotypic traits and components of fitness is common in A. thaliana.
Collapse
Affiliation(s)
- Marcus T Brock
- Department of Plant Biology, University of Minnesota, 1445 Gortner Avenue, Saint Paul, Minnesota 55108, USA.
| | | | | |
Collapse
|
20
|
Donohue K, Pyle EH, Messiqua D, Heschel MS, Schmitt J. ADAPTIVE DIVERGENCE IN PLASTICITY IN NATURAL POPULATIONS OF IMPATIENS CAPENSIS AND ITS CONSEQUENCES FOR PERFORMANCE IN NOVEL HABITATS. Evolution 2007. [DOI: 10.1111/j.0014-3820.2001.tb00805.x] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
|
21
|
Burns JH, Winn AA. A Comparison of Plastic Responses to Competition by Invasive and Non-invasive Congeners in the Commelinaceae. Biol Invasions 2006. [DOI: 10.1007/s10530-005-3838-5] [Citation(s) in RCA: 63] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
|
22
|
Heschel MS, Hausmann N, Schmitt J. Testing for stress-dependent inbreeding depression in Impatiens capensis (Balsaminaceae). AMERICAN JOURNAL OF BOTANY 2005; 92:1322-1329. [PMID: 21646152 DOI: 10.3732/ajb.92.8.1322] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
The relevance of inbreeding depression to the persistence of plant populations can depend upon whether stress magnifies inbreeding depression for fitness-related traits. To examine whether drought stress exacerbates inbreeding depression in gas exchange traits and biomass, we grew selfed and outcrossed progeny of inbred lines from two populations of Impatiens capensis in a greenhouse experiment under water-limited and moist soil conditions. Drought stress did not magnify the degree of inbreeding depression for any of the traits measured. In fact, in one population there was a trend for stronger inbreeding depression under well-watered, benign conditions. Furthermore, significant inbreeding depression for carbon assimilation rate and stomatal conductance was only detected in the lines from one population. In contrast, inbreeding depression for biomass was detected within both populations and differed among lines. Drought stress exerted significant selection on physiological traits, favoring increased carbon assimilation rates and decreased stomatal conductance in drought-stressed plants. Patterns of selection did not differ between inbred and outcrossed plants but did differ marginally between populations. Thus, estimates of selection were not biased by the mixed mating system per se, but may be biased by combining individuals from populations with different histories of selection and inbreeding.
Collapse
Affiliation(s)
- M Shane Heschel
- Department of Ecology and Evolutionary Biology, Brown University, Box G-W, Providence, Rhode Island 02912 USA
| | | | | |
Collapse
|
23
|
Byers DL. Evolution in heterogeneous environments and the potential of maintenance of genetic variation in traits of adaptive significance. Genetica 2005; 123:107-24. [PMID: 15881684 DOI: 10.1007/s10709-003-2721-5] [Citation(s) in RCA: 65] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
Abstract
The maintenance of genetic variation in traits of adaptive significance has been a major dilemma of evolutionary biology. Considering the pattern of increased genetic variation associated with environmental clines and heterogeneous environments, selection in heterogeneous environments has been proposed to facilitate the maintenance of genetic variation. Some models examining whether genetic variation can be maintained, in heterogeneous environments are reviewed. Genetic mechanisms that constrain evolution in quantitative genetic traits indicate that genetic variation can be maintained but when is not clear. Furthermore, no comprehensive models have been developed, likely due to the genetic and environmental complexity of this issue. Therefore, I have suggested two empirical approaches to provide insight for future theoretical and empirical research. Traditional path analysis has been a very powerful approach for understanding phenotypic selection. However, it requires substantial information on the biology of the study system to construct a causal model and alternatives. Exploratory path analysis is a data driven approach that uses the statistical relationships in the data to construct a set of models. For example, it can be used for understanding phenotypic selection in different environments, where there is no prior information to develop path models in the different environments. Data from Brassica rapa grown in different nutrients indicated that selection changed in the different environments. Experimental evolutionary studies will provide direct tests as to when genetic variation is maintained.
Collapse
Affiliation(s)
- Diane L Byers
- Behavior, Ecology, Evolution, and Systematics Section, Department of Biological Sciences, Illinois State University, Campus Box 4120, Normal, IL 61790-4120, USA.
| |
Collapse
|
24
|
Charmantier A, Garant D. Environmental quality and evolutionary potential: lessons from wild populations. Proc Biol Sci 2005; 272:1415-25. [PMID: 16011915 PMCID: PMC1559820 DOI: 10.1098/rspb.2005.3117] [Citation(s) in RCA: 323] [Impact Index Per Article: 17.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2005] [Accepted: 04/28/2005] [Indexed: 11/12/2022] Open
Abstract
An essential requirement to determine a population's potential for evolutionary change is to quantify the amount of genetic variability expressed for traits under selection. Early investigations in laboratory conditions showed that the magnitude of the genetic and environmental components of phenotypic variation can change with environmental conditions. However, there is no consensus as to how the expression of genetic variation is sensitive to different environmental conditions. Recently, the study of quantitative genetics in the wild has been revitalized by new pedigree analyses based on restricted maximum likelihood, resulting in a number of studies investigating these questions in wild populations. Experimental manipulation of environmental quality in the wild, as well as the use of naturally occurring favourable or stressful environments, has broadened the treatment of different taxa and traits. Here, we conduct a meta-analysis on recent studies comparing heritability in favourable versus unfavourable conditions in non-domestic and non-laboratory animals. The results provide evidence for increased heritability in more favourable conditions, significantly so for morphometric traits but not for traits more closely related to fitness. We discuss how these results are explained by underlying changes in variance components, and how they represent a major step in our understanding of evolutionary processes in wild populations. We also show how these trends contrast with the prevailing view resulting mainly from laboratory experiments on Drosophila. Finally, we underline the importance of taking into account the environmental variation in models predicting quantitative trait evolution.
Collapse
Affiliation(s)
- Anne Charmantier
- Department of Zoology, Edward Grey Institute, University of Oxford, Oxford OX1 3PS, UK.
| | | |
Collapse
|
25
|
Lepik M, Liira J, Zobel K. High shoot plasticity favours plant coexistence in herbaceous vegetation. Oecologia 2005; 145:465-74. [PMID: 15983752 DOI: 10.1007/s00442-005-0142-0] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2005] [Accepted: 04/22/2005] [Indexed: 10/25/2022]
Abstract
Several theoretical considerations imply that high shoot morphological plasticity could increase competition symmetry and favour plant coexistence. We tested whether mean plasticity across co-occurring species is a key trait for explaining ramet density and species richness in herbaceous vegetation. We used three data sets to test the hypotheses: (a) experimentally achieved estimates of plasticity to light availability for 35 herbaceous species; (b) richness, ramet density and canopy architecture data from 17 herbaceous communities; (c) species richness data from a 5-year permanent-plot study in a calcareous grassland. In herbaceous communities containing species with relatively higher shoot plasticity, ramet density was significantly higher. Consequently, relatively more species were growing per unit area-a greater proportion of the community species pool was represented on 1 m(2). In the permanent plot study species-richness was higher in those 40 x 40 cm quadrats where species with high shoot plasticity prevailed-there was a positive regression of richness on the mean plasticity of species. This relationship was highly significant in five consecutive years. Our results suggest that shoot plasticity to light availability is evidently one of the key traits in processes that alter the density of co-existing plants and, therefore, species diversity in herbaceous communities.
Collapse
Affiliation(s)
- Mari Lepik
- Institute of Botany and Ecology, Tartu University, 40 Lai St, 51005 Tartu, Estonia.
| | | | | |
Collapse
|
26
|
von Wettberg EJ, Schmitt J. Physiological mechanism of population differentiation in shade-avoidance responses between woodland and clearing genotypes of Impatiens capensis. AMERICAN JOURNAL OF BOTANY 2005; 92:868-74. [PMID: 21652468 DOI: 10.3732/ajb.92.5.868] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
Abstract
Forest understory plants often respond less intensely to reduced ratios of red to far red (R : FR) light, an important signal of foliage shade, than conspecific or congeneric plants from open-canopy sites. Reduced responsiveness to low R : FR in plants from closed-canopy sites could be caused by two physiological mechanisms. First, closed-canopy plants could have less sensitive shade-avoidance responses to low R : FR. Second, the high irradiance response to FR (FR-HIR), which allows seedling de-etiolation under low R : FR, might be stronger or persist longer after de-etiolation in closed-canopy plants, thus counteracting shade-avoidance responses to low R : FR. These hypotheses were tested using diodes that emit red and far-red light to distinguish the responses to altered R : FR of genotypes of Impatiens capensis collected from a pair of open- and closed-canopy populations that have previously been shown to differ in sensitivity to R : FR. Genotypes from the open-canopy environment exhibited typical shade-avoidance responses, elongating in response to supplemental FR. However, genotypes from the closed-canopy environment responded to supplemental FR by elongating less than under ambient control conditions, indicating a persistent FR-HIR. Thus, the observed population differentiation in response to low R : FR may be linked to population differences in FR-HIR.
Collapse
Affiliation(s)
- Eric J von Wettberg
- Ecology and Evolutionary Biology, Brown University, Providence, Rhode Island 02912 USA
| | | |
Collapse
|
27
|
Hereford J, Moriuchi KS. Variation among populations of Diodia teres (Rubiaceae) in environmental maternal effects. J Evol Biol 2005; 18:124-31. [PMID: 15669968 DOI: 10.1111/j.1420-9101.2004.00797.x] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Abstract
Previous studies have quantified variation in environmental maternal effects (EME) within populations, but these effects could differ among populations as well. In this study we grew clonal replicates of individuals from three populations of the annual plant Diodia teres in their native and non-native environments. Our goal was to estimate the effects of maternal environment and maternal population on seed and seedling traits. Seeds that were produced in this field study were then planted in two soil types to quantify effects of the offspring environment on seedling traits. There was substantial variation among populations for seed weight. We found population variation for EME, and maternal environment by offspring environment interactions. We conclude that variation among populations in EME may be an unrecognized component of local adaptation, and that attempts to control maternal effects by statistically accounting for variation in seed weight may be ineffective.
Collapse
Affiliation(s)
- J Hereford
- Department of Biological Science, Florida State University, Tallahassee, FL 32306-1100, USA.
| | | |
Collapse
|
28
|
Heschel MS, Riginos C. Mechanisms of selection for drought stress tolerance and avoidance in Impatiens capensis (Balsaminaceae). AMERICAN JOURNAL OF BOTANY 2005; 92:37-44. [PMID: 21652382 DOI: 10.3732/ajb.92.1.37] [Citation(s) in RCA: 72] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
Abstract
For longer lived annual plants, high water-use efficiency (WUE) and low stomatal conductance are hypothesized to confer a fitness advantage under drought stress. To directly test the adaptive significance of WUE and stomatal conductance under drought stress, inbred lines of Impatiens capensis were grown in two field environments (watered and not-watered), in a year of unusual early-season drought. In contrast to the results from a previous study of late-season drought in the same system, selection was detected for lower WUE, increased stomatal conductance, and early flowering time. These findings suggest that early-season drought conditions may select for drought avoidance traits such as low WUE and early reproduction, whereas later drought selects for tolerance traits such as high WUE.
Collapse
Affiliation(s)
- M Shane Heschel
- Department of Ecology and Evolutionary Biology, Brown University, Box G-W, Providence, Rhode Island 02912 USA
| | | |
Collapse
|
29
|
Abstract
The constancy of the genetic variance-covariance matrix (G matrix) across environments and populations has been discussed and tested empirically over the years but no consensus has so far been reached. In this paper, I present a model in which morphological traits develop hierarchically, and individuals differ in their resource allocation and acquisition patterns. If the variance in resource acquisition is many times larger than the variance in resource allocation then strong genetic correlations are expected, and with almost isometric relations among traits. As the variation in resource acquisition decreases below a certain threshold, the correlations decrease overall and the relations among traits become a function of the allocation patterns, and in particular reflecting the basal division of allocation. A strong bottleneck can break a pattern of strong genetic correlation, but this effect diminishes rapidly with increasing bottleneck size. This model helps to understand why some populations change their genetic correlations in different environments, whereas others do not, since the key factor is the relation between the variances in resource acquisition and allocation. If a change in environment does not lead to a change in this ratio, no change can be expected, whereas if the ratio is changed substantially then major changes can be expected. This model can also help to understand the constancy of morphological patterns within larger taxa as a function of constancy in resource acquisition patterns over time and environments. When this pattern breaks, for example on islands, larger changes can be expected.
Collapse
Affiliation(s)
- Mats Björklund
- Department of Animal Ecology, Evolutionary Biology Centre, Uppsala University, Norbyvägen 18 D, SE-752 36 Uppsala, Sweden.
| |
Collapse
|
30
|
Huber H, Kane NC, Heschel MS, von Wettberg EJ, Banta J, Leuck AM, Schmitt J. Frequency and Microenvironmental Pattern of Selection on Plastic Shade‐Avoidance Traits in a Natural Population ofImpatiens capensis. Am Nat 2004; 163:548-63. [PMID: 15122502 DOI: 10.1086/382549] [Citation(s) in RCA: 85] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2003] [Accepted: 09/24/2003] [Indexed: 11/03/2022]
Abstract
The frequency and predictability of different selective environments are important parameters in models for the evolution of plasticity but have rarely been measured empirically in natural populations. We used an experimental phytometer approach to examine the frequency, predictability, and environmental determinants of heterogeneous selection on phytochrome-mediated shade-avoidance responses in a natural population of the annual plant Impatiens capensis. The strength and direction of selection on shade-avoidance traits varied substantially on a fine spatial scale. The shade-avoidance phenotype had high relative fecundity in some microsites but was disadvantageous in other microsites. Local seedling density proved to be a surprisingly poor predictor of microenvironmental variation in the strength and direction of selection on stem elongation in this study population. At least some of this unpredictability resulted from microenvironmental variation in water availability; the shade-avoidance phenotype was more costly in dry microsites. Thus, environmental heterogeneity in resource availability can affect the relative costs and benefits of expressing shade-avoidance traits independent of local seedling density, the inductive environmental cue. Theory predicts that these conditions may promote local genetic differentiation in reaction norms in structured populations, as observed in I. capensis.
Collapse
Affiliation(s)
- Heidrun Huber
- Department of Ecology and Evolutionary Biology, Brown University, Providence, Rhode Island 02912, USA.
| | | | | | | | | | | | | |
Collapse
|
31
|
Weinig C, Gravuer KA, Kane NC, Schmitt J. TESTING ADAPTIVE PLASTICITY TO UV: COSTS AND BENEFITS OF STEM ELONGATION AND LIGHT-INDUCED PHENOLICS. Evolution 2004. [DOI: 10.1554/03-675] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
|
32
|
|
33
|
Travers SE, Temeles EJ, Pan I. The relationship between nectar spur curvature in jewelweed (Impatiens capensis) and pollen removal by hummingbird pollinators. ACTA ACUST UNITED AC 2003. [DOI: 10.1139/b03-014] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Floral nectar spurs are hypothesized to have had a major role in the evolution of floral diversity and plant-pollinator coadaptation. We examined variation in the degree of nectar spur curvature in two species of jewelweed (Impatiens capensis and Impatiens pallida) pollinated by different sets of pollinators. To distinguish between adaptive and nonadaptive explanations for between-species differences in curvature, we determined the relationship between spur curvature and pollen removal, which is one estimate of male reproductive success. Spur curvature exhibited considerable variation both within and among three populations, with spur angles ranging from 0° to 297°. A greenhouse experiment determined that spur curvature of I. capensis flowers has a broad-sense heritability of 0.636. Laboratory experiments indicated that flowers having recurved spurs deposit significantly more pollen grains on hummingbird visitors than flowers having perpendicular spurs, apparently as a result of greater contact between the androecium of curve-spurred flowers and the upper bill of hummingbirds. We also found a significant relationship between spur curvature and flower length, suggesting a developmental link between the two traits. We discuss the degree of spur curvature in bird-pollinated I. capensis as a function of both adaptive evolution and developmental constraint.Key words: pollination, nectar spurs, hummingbirds, Impatiens capensis, Impatiens pallida, pollen export, floral morphology, floral polymorphisms.
Collapse
|
34
|
Causin HF, Wulff RD. Changes in the responses to light quality during ontogeny in Chenopodium album. ACTA ACUST UNITED AC 2003. [DOI: 10.1139/b03-012] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Morphological shade-avoidance responses have been hypothesized to be a form of adaptive plasticity to improve competition for light; however, little is known about their intraspecific variability and their effect on reproductive fitness. To compare plant responses either at a common age or at a common phenological stage, two experiments were conducted with early- and late-flowering Chenopodium album plants exposed to different red (660 nm) to far red (730 nm) ratios. In the first experiment, plant height and number of leaves were recorded at several times during the vegetative stage, and at the onset of flowering, each plant was harvested and other growth traits were measured. In the second experiment, three destructive harvests were performed across the whole plant cycle. Plant growth and development markedly differed between early- and late-flowering plants in all of the conditions tested. Light treatments significantly affected stem length, total leaf number, total leaf area, and relative allocation to leaf biomass. In all families, the response of stem elongation to light treatments decreased later in the development, while changes in the other plastic responses were mostly due to variations in plant growth. No significant treatment effect was found on relative biomass allocation to reproductive structures. However, individual seed mass significantly differed between certain groups, indicating that light quality can affect reproductive fitness through changes in traits other than fruit or seed set.Key words: Chenopodium album, fitness, intraspecific variability, phenotypic plasticity, red to far red ratio, shade-avoidance responses.
Collapse
|
35
|
Tucic B, Stojkovic B. Shade avoidance syndrome in Picea omorika seedlings: a growth-room experiment. J Evol Biol 2001. [DOI: 10.1046/j.1420-9101.2001.00291.x] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
|
36
|
Donohue K, Pyle EH, Messiqua D, Heschel MS, Schmitt J. Adaptive divergence in plasticity in natural populations of Impatiens capensis and its consequences for performance in novel habitats. Evolution 2001; 55:692-702. [PMID: 11392387 DOI: 10.1554/0014-3820(2001)055[0692:adipin]2.0.co;2] [Citation(s) in RCA: 117] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
We tested for adaptive differentiation between two natural populations of Impatiens capensis from sites known to differ in selection on plasticity to density. We also determined the degree to which plasticity to density within a site was correlated with plastic responses of experimental immigrants to foreign sites. Inbred lines, derived from natural populations in an open-canopy site and a woodland site, were planted reciprocally in both original sites at naturally occurring high densities and at low density. The density manipulation represents environmental variation typically experienced within the site of a given population, and the transplant manipulation represents environmental differences between sites of different populations. Internode elongation, meristem allocation, leaf length, flowering date, and total lifetime fitness were measured. Genotypes originating in the open site, where selection favored plasticity of first internode length and flowering time (Donohue et al. 2000a), were more plastic in those characters than genotypes originating from the woodland site, where plasticity was maladaptive. Therefore, these two populations appear to have responded to divergent selection on plasticity. Plasticity to density strongly resembled plasticity to site differences for many characters, suggesting that similar environmental factors elicit plasticity both to density and to overhead canopy. Thus, plasticity that evolved in response to density variation within a site influenced phenotypic expression in the foreign site. Plastic responses to site caused immigrants from foreign populations to resemble native genotypes more closely. In particular, immigrants from the open site converged toward the selectively favored early-flowering phenotype of native genotypes in the woodland site, thereby reducing potential fitness differences between foreign and native genotypes. However, because genotypes from the woods population were less plastic than genotypes from the sun population, phenotypic differences between populations were greatest in the open site at low density. Therefore, population differences in plasticity can cause genotypes from foreign populations to be more strongly selected against in some environments than in others. However, genetic constraints and limits to plasticity prevented complete convergence of immigrants to the native phenotype in any environment.
Collapse
Affiliation(s)
- K Donohue
- Department of Ecology and Evolutionary Biology, Brown University, Providence, Rhode Island 02912, USA.
| | | | | | | | | |
Collapse
|
37
|
Donohue K, Pyle EH, Messiqua D, Heschel MS, Schmitt J. Adaptive divergence in plasticity in natural populations of Impatiens capensis and its consequences for performance in novel habitats. Evolution 2001. [PMID: 11392387 DOI: 10.1554/0014-3820(2001)055%5b0692:adipin%5d2.0.co;2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
Abstract
We tested for adaptive differentiation between two natural populations of Impatiens capensis from sites known to differ in selection on plasticity to density. We also determined the degree to which plasticity to density within a site was correlated with plastic responses of experimental immigrants to foreign sites. Inbred lines, derived from natural populations in an open-canopy site and a woodland site, were planted reciprocally in both original sites at naturally occurring high densities and at low density. The density manipulation represents environmental variation typically experienced within the site of a given population, and the transplant manipulation represents environmental differences between sites of different populations. Internode elongation, meristem allocation, leaf length, flowering date, and total lifetime fitness were measured. Genotypes originating in the open site, where selection favored plasticity of first internode length and flowering time (Donohue et al. 2000a), were more plastic in those characters than genotypes originating from the woodland site, where plasticity was maladaptive. Therefore, these two populations appear to have responded to divergent selection on plasticity. Plasticity to density strongly resembled plasticity to site differences for many characters, suggesting that similar environmental factors elicit plasticity both to density and to overhead canopy. Thus, plasticity that evolved in response to density variation within a site influenced phenotypic expression in the foreign site. Plastic responses to site caused immigrants from foreign populations to resemble native genotypes more closely. In particular, immigrants from the open site converged toward the selectively favored early-flowering phenotype of native genotypes in the woodland site, thereby reducing potential fitness differences between foreign and native genotypes. However, because genotypes from the woods population were less plastic than genotypes from the sun population, phenotypic differences between populations were greatest in the open site at low density. Therefore, population differences in plasticity can cause genotypes from foreign populations to be more strongly selected against in some environments than in others. However, genetic constraints and limits to plasticity prevented complete convergence of immigrants to the native phenotype in any environment.
Collapse
Affiliation(s)
- K Donohue
- Department of Ecology and Evolutionary Biology, Brown University, Providence, Rhode Island 02912, USA.
| | | | | | | | | |
Collapse
|
38
|
Gilchrist GW, Huey RB. PARENTAL AND DEVELOPMENTAL TEMPERATURE EFFECTS ON THE THERMAL DEPENDENCE OF FITNESS IN DROSOPHILA MELANOGASTER. Evolution 2001. [DOI: 10.1554/0014-3820(2001)055[0209:padteo]2.0.co;2] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
|
39
|
Dorn LA, Hammond Pyle E, Schmitt J. PLASTICITY TO LIGHT CUES AND RESOURCES IN ARABIDOPSIS THALIANA: TESTING FOR ADAPTIVE VALUE AND COSTS. Evolution 2000. [DOI: 10.1554/0014-3820(2000)054[1982:ptlcar]2.0.co;2] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
|
40
|
Donohue K, Messiqua D, Hammond Pyle E, Heschel MS, Schmitt J. EVIDENCE OF ADAPTIVE DIVERGENCE IN PLASTICITY: DENSITY- AND SITE-DEPENDENT SELECTION ON SHADE-AVOIDANCE RESPONSES IN IMPATIENS CAPENSIS. Evolution 2000. [DOI: 10.1554/0014-3820(2000)054[1956:eoadip]2.0.co;2] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
|
41
|
Donohue K, Hammond Pyle E, Messiqua D, Heschel MS, Schmitt J. DENSITY DEPENDENCE AND POPULATION DIFFERENTIATION OF GENETIC ARCHITECTURE IN IMPATIENS CAPENSIS IN NATURAL ENVIRONMENTS. Evolution 2000. [DOI: 10.1554/0014-3820(2000)054[1969:ddapdo]2.0.co;2] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
|