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For: Pichon C, Felden B. Proteins that interact with bacterial small RNA regulators. FEMS Microbiol Rev 2007;31:614-25. [PMID: 17655690 DOI: 10.1111/j.1574-6976.2007.00079.x] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]  Open
Number Cited by Other Article(s)
1
Marogi JG, Murphy CT, Myhrvold C, Gitai Z. P. aeruginosa controls both C. elegans attraction and pathogenesis by regulating nitrogen assimilation. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.11.29.569279. [PMID: 38077073 PMCID: PMC10705433 DOI: 10.1101/2023.11.29.569279] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/16/2024]
2
Sarshar M, Scribano D, Palamara AT, Ambrosi C, Masotti A. The Acinetobacter baumannii model can explain the role of small non-coding RNAs as potential mediators of host-pathogen interactions. Front Mol Biosci 2022;9:1088783. [PMID: 36619166 PMCID: PMC9810633 DOI: 10.3389/fmolb.2022.1088783] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2022] [Accepted: 12/07/2022] [Indexed: 12/24/2022]  Open
3
Xu Q, Chen H, Sun W, Zhang Y, Zhu D, Rai KR, Chen JL, Chen Y. sRNA23, a novel small RNA, regulates to the pathogenesis of Streptococcus suis serotype 2. Virulence 2021;12:3045-3061. [PMID: 34882070 PMCID: PMC8667912 DOI: 10.1080/21505594.2021.2008177] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]  Open
4
Felden B, Augagneur Y. Diversity and Versatility in Small RNA-Mediated Regulation in Bacterial Pathogens. Front Microbiol 2021;12:719977. [PMID: 34447363 PMCID: PMC8383071 DOI: 10.3389/fmicb.2021.719977] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2021] [Accepted: 07/20/2021] [Indexed: 11/13/2022]  Open
5
In Silico Prediction for ncRNAs in Prokaryotes. Methods Mol Biol 2021. [PMID: 34251633 DOI: 10.1007/978-1-0716-1534-8_18] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register]
6
Medina-Pérez DN, Wager B, Troy E, Gao L, Norris SJ, Lin T, Hu L, Hyde JA, Lybecker M, Skare JT. The intergenic small non-coding RNA ittA is required for optimal infectivity and tissue tropism in Borrelia burgdorferi. PLoS Pathog 2020;16:e1008423. [PMID: 32365143 PMCID: PMC7224557 DOI: 10.1371/journal.ppat.1008423] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2020] [Revised: 05/14/2020] [Accepted: 04/01/2020] [Indexed: 12/15/2022]  Open
7
Han R, Haning K, Gonzalez-Rivera JC, Yang Y, Li R, Cho SH, Huang J, Simonsen BA, Yang S, Contreras LM. Multiple Small RNAs Interact to Co-regulate Ethanol Tolerance in Zymomonas mobilis. Front Bioeng Biotechnol 2020;8:155. [PMID: 32195236 PMCID: PMC7064620 DOI: 10.3389/fbioe.2020.00155] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2019] [Accepted: 02/14/2020] [Indexed: 01/18/2023]  Open
8
Diallo I, Provost P. RNA-Sequencing Analyses of Small Bacterial RNAs and their Emergence as Virulence Factors in Host-Pathogen Interactions. Int J Mol Sci 2020;21:E1627. [PMID: 32120885 PMCID: PMC7084465 DOI: 10.3390/ijms21051627] [Citation(s) in RCA: 33] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2020] [Revised: 02/22/2020] [Accepted: 02/25/2020] [Indexed: 12/14/2022]  Open
9
Comparative Transcriptomic and Functional Assessments of Linezolid-Responsive Small RNA Genes in Staphylococcus aureus. mSystems 2020;5:5/1/e00665-19. [PMID: 31911464 PMCID: PMC6946794 DOI: 10.1128/msystems.00665-19] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]  Open
10
Carvalho Garcia A, Dos Santos VLP, Santos Cavalcanti TC, Collaço LM, Graf H. Bacterial Small RNAs in the Genus Herbaspirillum spp. Int J Mol Sci 2018;20:ijms20010046. [PMID: 30583511 PMCID: PMC6337395 DOI: 10.3390/ijms20010046] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2018] [Revised: 12/12/2018] [Accepted: 12/12/2018] [Indexed: 12/26/2022]  Open
11
Gonzalez GM, Durica-Mitic S, Hardwick SW, Moncrieffe MC, Resch M, Neumann P, Ficner R, Görke B, Luisi BF. Structural insights into RapZ-mediated regulation of bacterial amino-sugar metabolism. Nucleic Acids Res 2017;45:10845-10860. [PMID: 28977623 PMCID: PMC5737377 DOI: 10.1093/nar/gkx732] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2017] [Revised: 07/05/2017] [Accepted: 08/09/2017] [Indexed: 11/13/2022]  Open
12
Small RNAs in Bacterial Virulence and Communication. Microbiol Spectr 2017;4. [PMID: 27337442 DOI: 10.1128/microbiolspec.vmbf-0028-2015] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]  Open
13
Madan B, Kasprzak JM, Tuszynska I, Magnus M, Szczepaniak K, Dawson WK, Bujnicki JM. Modeling of Protein-RNA Complex Structures Using Computational Docking Methods. Methods Mol Biol 2016;1414:353-372. [PMID: 27094302 DOI: 10.1007/978-1-4939-3569-7_21] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
14
Song C, van der Voort M, van de Mortel J, Hassan KA, Elbourne LDH, Paulsen IT, Loper JE, Raaijmakers JM. The Rsm regulon of plant growth-promoting Pseudomonas fluorescens SS101: role of small RNAs in regulation of lipopeptide biosynthesis. Microb Biotechnol 2014;8:296-310. [PMID: 25488342 PMCID: PMC4353343 DOI: 10.1111/1751-7915.12190] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2014] [Revised: 09/29/2014] [Accepted: 10/02/2014] [Indexed: 11/28/2022]  Open
15
Noncoding RNA in Mycobacteria. Microbiol Spectr 2014;2. [PMID: 26105815 DOI: 10.1128/microbiolspec.mgm2-0029-2013] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]  Open
16
Jagusztyn-Krynicka EK, Dadlez M, Grabowska A, Roszczenko P. Proteomic technology in the design of new effective antibacterial vaccines. Expert Rev Proteomics 2014;6:315-30. [DOI: 10.1586/epr.09.47] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
17
The ribonucleoprotein Csr network. Int J Mol Sci 2013;14:22117-31. [PMID: 24217225 PMCID: PMC3856055 DOI: 10.3390/ijms141122117] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2013] [Revised: 10/21/2013] [Accepted: 10/28/2013] [Indexed: 11/16/2022]  Open
18
Soutourina OA, Monot M, Boudry P, Saujet L, Pichon C, Sismeiro O, Semenova E, Severinov K, Le Bouguenec C, Coppée JY, Dupuy B, Martin-Verstraete I. Genome-wide identification of regulatory RNAs in the human pathogen Clostridium difficile. PLoS Genet 2013;9:e1003493. [PMID: 23675309 PMCID: PMC3649979 DOI: 10.1371/journal.pgen.1003493] [Citation(s) in RCA: 171] [Impact Index Per Article: 15.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2012] [Accepted: 03/20/2013] [Indexed: 11/19/2022]  Open
19
Göpel Y, Papenfort K, Reichenbach B, Vogel J, Görke B. Targeted decay of a regulatory small RNA by an adaptor protein for RNase E and counteraction by an anti-adaptor RNA. Genes Dev 2013;27:552-64. [PMID: 23475961 DOI: 10.1101/gad.210112.112] [Citation(s) in RCA: 93] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
20
Hébrard M, Kröger C, Srikumar S, Colgan A, Händler K, Hinton JCD. sRNAs and the virulence of Salmonella enterica serovar Typhimurium. RNA Biol 2012;9:437-45. [PMID: 22546935 PMCID: PMC3384567 DOI: 10.4161/rna.20480] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]  Open
21
Pernitzsch SR, Sharma CM. Transcriptome complexity and riboregulation in the human pathogen Helicobacter pylori. Front Cell Infect Microbiol 2012;2:14. [PMID: 22919606 PMCID: PMC3417511 DOI: 10.3389/fcimb.2012.00014] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2011] [Accepted: 02/02/2012] [Indexed: 12/21/2022]  Open
22
Gerstle K, Klätschke K, Hahn U, Piganeau N. The small RNA RybA regulates key-genes in the biosynthesis of aromatic amino acids under peroxide stress in E. coli. RNA Biol 2012;9:458-68. [PMID: 22336764 DOI: 10.4161/rna.19065] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]  Open
23
From conformational chaos to robust regulation: the structure and function of the multi-enzyme RNA degradosome. Q Rev Biophys 2011;45:105-45. [DOI: 10.1017/s003358351100014x] [Citation(s) in RCA: 63] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
24
Pichon C, du Merle L, Caliot ME, Trieu-Cuot P, Le Bouguénec C. An in silico model for identification of small RNAs in whole bacterial genomes: characterization of antisense RNAs in pathogenic Escherichia coli and Streptococcus agalactiae strains. Nucleic Acids Res 2011;40:2846-61. [PMID: 22139924 PMCID: PMC3326304 DOI: 10.1093/nar/gkr1141] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]  Open
25
Bohn C, Rigoulay C, Chabelskaya S, Sharma CM, Marchais A, Skorski P, Borezée-Durant E, Barbet R, Jacquet E, Jacq A, Gautheret D, Felden B, Vogel J, Bouloc P. Experimental discovery of small RNAs in Staphylococcus aureus reveals a riboregulator of central metabolism. Nucleic Acids Res 2010;38:6620-36. [PMID: 20511587 PMCID: PMC2965222 DOI: 10.1093/nar/gkq462] [Citation(s) in RCA: 145] [Impact Index Per Article: 10.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]  Open
26
Laporte P, Satiat-Jeunemaître B, Velasco I, Csorba T, Van de Velde W, Campalans A, Burgyan J, Arevalo-Rodriguez M, Crespi M. A novel RNA-binding peptide regulates the establishment of the Medicago truncatula-Sinorhizobium meliloti nitrogen-fixing symbiosis. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2010;62:24-38. [PMID: 20042020 DOI: 10.1111/j.1365-313x.2009.04121.x] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
27
Said N, Rieder R, Hurwitz R, Deckert J, Urlaub H, Vogel J. In vivo expression and purification of aptamer-tagged small RNA regulators. Nucleic Acids Res 2009;37:e133. [PMID: 19726584 PMCID: PMC2777422 DOI: 10.1093/nar/gkp719] [Citation(s) in RCA: 74] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]  Open
28
Dietrich M, Munke R, Gottschald M, Ziska E, Boettcher JP, Mollenkopf H, Friedrich A. The effect of hfq on global gene expression and virulence in Neisseria gonorrhoeae. FEBS J 2009;276:5507-20. [PMID: 19691497 DOI: 10.1111/j.1742-4658.2009.07234.x] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
29
Small regulatory non-coding RNAs in bacteria: physiology and mechanistic aspects. Biol Cell 2009;101:117-31. [PMID: 19076068 DOI: 10.1042/bc20070137] [Citation(s) in RCA: 126] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
30
Pichon C, Felden B. Small RNA gene identification and mRNA target predictions in bacteria. Bioinformatics 2008;24:2807-13. [PMID: 18974076 DOI: 10.1093/bioinformatics/btn560] [Citation(s) in RCA: 53] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
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