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Hoddle MS, Antony B, El-Shafie HAF, Chamorro ML, Milosavljević I, Löhr B, Faleiro JR. Taxonomy, Biology, Symbionts, Omics, and Management of Rhynchophorus Palm Weevils (Coleoptera: Curculionidae: Dryophthorinae). ANNUAL REVIEW OF ENTOMOLOGY 2024; 69:455-479. [PMID: 38270987 DOI: 10.1146/annurev-ento-013023-121139] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/27/2024]
Abstract
Palm weevils, Rhynchophorus spp., are destructive pests of native, ornamental, and agricultural palm species. Of the 10 recognized species, two of the most injurious species, Rhynchophorus ferrugineus and Rhynchophorus palmarum, both of which have spread beyond their native range, are the best studied. Due to its greater global spread and damage to edible date industries in the Middle East, R. ferrugineus has received more research interest. Integrated pest management programs utilize traps baited with aggregation pheromone, removal of infested palms, and insecticides. However, weevil control is costly, development of resistance to insecticides is problematic, and program efficacy can be impaired because early detection of infestations is difficult. The genome of R. ferrugineus has been sequenced, and omics research is providing insight into pheromone communication and changes in volatile and metabolism profiles of weevil-infested palms. We outline how such developments could lead to new control strategies and early detection tools.
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Affiliation(s)
- Mark S Hoddle
- Department of Entomology, University of California, Riverside, California, USA; ,
| | - Binu Antony
- Chair of Date Palm Research, Department of Plant Protection, College of Food and Agricultural Sciences, King Saud University, Riyadh, Saudi Arabia;
| | - Hamadttu A F El-Shafie
- Sustainable Date Palm Pest Management Research Program, Date Palm Research Center of Excellence, King Faisal University, Hofuf-Al-Ahsa, Saudi Arabia;
| | - M Lourdes Chamorro
- Systematic Entomology Laboratory, Agricultural Research Service, US Department of Agriculture, c/o National Museum of Natural History, Smithsonian Institution, Washington, DC, USA;
| | - Ivan Milosavljević
- Department of Entomology, University of California, Riverside, California, USA; ,
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Zhong B, Lv C, Li W, Li C, Chen T. Virulence of entomopathogenic bacteria Serratia marcescens against the red palm weevil, Rhynchophorus ferrugineus (Olivier). PeerJ 2023; 11:e16528. [PMID: 38054022 PMCID: PMC10695106 DOI: 10.7717/peerj.16528] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2023] [Accepted: 11/06/2023] [Indexed: 12/07/2023] Open
Abstract
Background The red palm weevil (RPW), Rhynchophorus ferrugineus (Olivier), is an important quarantine pest, which has caused serious economic losses in various palm species, such as coconut, oil palm and date palm. Finding effective biocontrol resources is important for the control of this pest and the protection of palm crops. Methods A pathogenic strain HJ-01 was isolated from infected and dead pupa of Tenebrio molitor using tissue separation method. The HJ-01 strain was streak cultured and purified, and its morphological, physiological, biochemical characteristics, and 16S rDNA homology were identified after conducting a pathogenicity test on RPW larvae. Results Strain HJ-01 exhibited remarkable pathogenicity against RPW larvae. Under the concentration of HJ-01 suspension was 1.0 × 108 cfu/mL, the mortality rate of RPW reached 82.22%, and the half-lethal time (LT50) was 4.72 days. RPW larvae infected with strain HJ-01 showed reduced movement, decreased appetite, and eventual death. As the treatment progresses, the larvae's bodies turned red, became soft, and started to rot, resulting in the discharge of liquid. HJ-01 demonstrated the ability to produce scarlet pigment after 24 h of culture on a basic medium. Colonies of HJ-01 appeared convex, bright red, moist, and viscous, opaque in the center, irregular at the edges, and emitted an unpleasant odor. Under microscopic observation, the cells of HJ-01 appeared as short rod-shaped and flagellate, with a size ranging from (1.2-1.8) μm × (1.0-1.2) μm. Genomic DNA extraction was performed on the strain, and the 16S rDNA sequence was amplified, yielding a sequence length of 1445 bp. The sequence of strain HJ-01 displayed a 99.72% similarity to that of Serratia marcescens. Phylogenetic tree analysis further confirmed that strain HJ-01 belonged to S. marcescens. Therefore, the strain HJ-01 has a very good lethal effect on RPW larvae, and it may be used as an effective bacterium for the control of RPW.
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Affiliation(s)
- Baozhu Zhong
- Coconut Research Institute, Chinese Academy of Tropical Agricultural Sciences, Wenchang, Hainan Province, China
| | - Chaojun Lv
- Coconut Research Institute, Chinese Academy of Tropical Agricultural Sciences, Wenchang, Hainan Province, China
| | - Wenlian Li
- Coconut Research Institute, Chinese Academy of Tropical Agricultural Sciences, Wenchang, Hainan Province, China
| | - Chaoxu Li
- Coconut Research Institute, Chinese Academy of Tropical Agricultural Sciences, Wenchang, Hainan Province, China
| | - Tuo Chen
- Coconut Research Institute, Chinese Academy of Tropical Agricultural Sciences, Wenchang, Hainan Province, China
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Manee MM, Alqahtani FH, Al-Shomrani BM, El-Shafie HAF, Dias GB. Omics in the Red Palm Weevil Rhynchophorus ferrugineus (Olivier) (Coleoptera: Curculionidae): A Bridge to the Pest. INSECTS 2023; 14:255. [PMID: 36975940 PMCID: PMC10054242 DOI: 10.3390/insects14030255] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/31/2023] [Revised: 02/23/2023] [Accepted: 03/02/2023] [Indexed: 06/18/2023]
Abstract
The red palm weevil (RPW), Rhynchophorus ferrugineus (Coleoptera: Curculionidae), is the most devastating pest of palm trees worldwide. Mitigation of the economic and biodiversity impact it causes is an international priority that could be greatly aided by a better understanding of its biology and genetics. Despite its relevance, the biology of the RPW remains poorly understood, and research on management strategies often focuses on outdated empirical methods that produce sub-optimal results. With the development of omics approaches in genetic research, new avenues for pest control are becoming increasingly feasible. For example, genetic engineering approaches become available once a species's target genes are well characterized in terms of their sequence, but also population variability, epistatic interactions, and more. In the last few years alone, there have been major advances in omics studies of the RPW. Multiple draft genomes are currently available, along with short and long-read transcriptomes, and metagenomes, which have facilitated the identification of genes of interest to the RPW scientific community. This review describes omics approaches previously applied to RPW research, highlights findings that could be impactful for pest management, and emphasizes future opportunities and challenges in this area of research.
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Affiliation(s)
- Manee M. Manee
- National Center for Bioinformatics, King Abdulaziz City for Science and Technology, Riyadh 11442, Saudi Arabia
- Institute of Advanced Agricultural and Food Technologies, King Abdulaziz City for Science and Technology, Riyadh 11442, Saudi Arabia
| | - Fahad H. Alqahtani
- National Center for Bioinformatics, King Abdulaziz City for Science and Technology, Riyadh 11442, Saudi Arabia
- Institute of Advanced Agricultural and Food Technologies, King Abdulaziz City for Science and Technology, Riyadh 11442, Saudi Arabia
| | - Badr M. Al-Shomrani
- National Center for Bioinformatics, King Abdulaziz City for Science and Technology, Riyadh 11442, Saudi Arabia
- Institute of Advanced Agricultural and Food Technologies, King Abdulaziz City for Science and Technology, Riyadh 11442, Saudi Arabia
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Montiel EE, Mora P, Rico-Porras JM, Palomeque T, Lorite P. Satellitome of the Red Palm Weevil, Rhynchophorus ferrugineus (Coleoptera: Curculionidae), the Most Diverse Among Insects. Front Ecol Evol 2022. [DOI: 10.3389/fevo.2022.826808] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022] Open
Abstract
The red palm weevil, Rhynchophorus ferrugineus, is the most harmful species among those pests affecting palm trees. Its impact causes important economic losses around the World. Nevertheless, the genetic information of Rh. ferrugineus is very scarce. Last year, the first genome assembly was published including a rough description of its repeatome. However, no information has been added about one of the main components of repeated DNA, the satellite DNA. Herein, we presented the characterization of the satellitome of this important species that includes 112 satellite DNA families, the largest number in an insect genome. These satellite DNA families made up around 25% of the genome while the most abundant family, RferSat01-169, alone represented 20.4%. Chromosomal location of most abundant satellite DNA families performed by fluorescence in situ hybridization showed that all of them are dispersed in the euchromatin on all chromosomes but some of them are also specifically accumulated either on the pericentromeric heterochromatic regions of all chromosomes or on specific chromosomes. Finally, the transcription of satellitome families was analyzed through Rh. ferrugineus development. It was found that 55 out of 112 satellite DNA families showed transcription, some families seemed to be transcribed across all stages while a few appeared to be stage-specific, indicating a possible role of those satellite DNA sequences in the development of this species.
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Yan TK, Asari A, Salleh SA, Azmi WA. Eugenol and Thymol Derivatives as Antifeedant Agents against Red Palm Weevil, Rhynchophorus ferrugineus (Coleoptera: Dryophthoridae) Larvae. INSECTS 2021; 12:insects12060551. [PMID: 34199269 PMCID: PMC8231963 DOI: 10.3390/insects12060551] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/26/2021] [Revised: 05/31/2021] [Accepted: 06/09/2021] [Indexed: 11/17/2022]
Abstract
Simple Summary Rhynchophorus ferrugineus or the red palm weevil (RPW) is a major invasive insect pest that causes severe problems for palm cultivations and, in turn, for the palm industries worldwide. The current practice for controlling RPW in Malaysia mainly involves the use of synthetic pesticides. However, synthetic pesticides should not be encouraged because they are highly toxic and persistent in the environment and as such, can cause deterioration to the ecosystem and human health. Essential oil (EO) derivatives from eugenol and thymol were tested as potential natural compounds for controlling RPW. We evaluated the effect of eight EO derivatives from eugenol and thymol against the fourth instar larvae of RPW. Feeding contact bioassay was conducted for 14 days with different concentrations of these derivatives, in three replications for each treatment. All the derivatives showed feeding deterrent effects against RPW larvae, particularly 4-allyl-2-methoxy-1-(4-trifluoromethyl-benzyloxy)-benzene and 2-isopropyl-4-methyl-2-((4-nitrobenzyl) oxy) benzene, which demonstrated the most effective antifeedant properties in the eugenol and thymol derivative group. Overall, our findings revealed that both eugenol and thymol derivatives showed similar antifeedant activity against RPW larvae. However, the ether derivatives showed a stronger antifeedant effect than that of esters. Both eugenol and thymol are effective against RPW and have the potential to be investigated further as botanical insecticides for the management of RPW in the future. Abstract Coconut palms in Malaysia are infested by a destructive invasive pest, RPW since 2007, and the pest’s population is difficult to control. At present, RPW control management mainly relies on the use of monocrotophos, which is administered by the trunk injection method. However, this pesticide can negatively impact human health and the ecosystem. Plant EO that can be used as a bio-pesticide is highly recommended as an alternative to monocrotophos because of its target-specific and eco-friendly properties. The antifeedant activity of eight eugenol and thymol derivatives from clove and thyme EOs were tested against the fourth instar larvae of RPW through oral bioassay for 14 days. Relative growth rate (RGR), relative consumption rate (RCR), the efficiency of conversion of ingested food (ECI), and the feeding deterrent index (FDI) were compared and analyzed. All of the derivatives showed antifeedant activity, particularly the eugenol derivative, 4-allyl-2-methoxy-1-(4-trifluoromethyl-benzyloxy)-benzene (FDI = 54.14%) and the thymol derivative, 2-isopropyl-4-methyl-2-((4-nitrobenzyl) oxy) benzene (FDI = 53.88%). Both of them showed promising results on their ability to be the most effective antifeedant agents in each derivative group. There was no significant difference in the effectiveness of the eugenol-based and thymol-based derivatives, but the ether derivative group (FDI = 45.63%) had a significantly stronger effect than the ester derivative group (FDI = 39.71%). This study revealed that the compound in ether form is more effective than the compound in ester form as an antifeedant agent against RPW larvae, regardless of the plant EO that the compound is derived from.
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Affiliation(s)
- Tay Karh Yan
- Faculty of Science and Marine Environment, Universiti Malaysia Terengganu, Kuala Nerus 21030, Terengganu, Malaysia; (T.K.Y.); (A.A.)
| | - Asnuzilawati Asari
- Faculty of Science and Marine Environment, Universiti Malaysia Terengganu, Kuala Nerus 21030, Terengganu, Malaysia; (T.K.Y.); (A.A.)
| | - Siti Aishah Salleh
- Department of Agriculture, Quarantine and Crop Protection Section, Kuala Terengganu 20050, Terengganu, Malaysia;
| | - Wahizatul Afzan Azmi
- Faculty of Science and Marine Environment, Universiti Malaysia Terengganu, Kuala Nerus 21030, Terengganu, Malaysia; (T.K.Y.); (A.A.)
- Institute of Tropical Biodiversity and Sustainable Development, Universiti Malaysia Terengganu, Kuala Nerus 21030, Terengganu, Malaysia
- Correspondence:
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Rasool KG, Mehmood K, Husain M, Tufail M, Alwaneen WS, Aldawood AS. De novo transcriptome analysis and identification of reproduction control genes from the red palm weevil Rhynchophorus ferrugineus. PLoS One 2021; 16:e0251278. [PMID: 34029342 PMCID: PMC8143396 DOI: 10.1371/journal.pone.0251278] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2021] [Accepted: 04/22/2021] [Indexed: 11/19/2022] Open
Abstract
Recent attacks by the red palm weevil, Rhynchophorus ferrugineus (Olivier), have become a severe problem for palm species. In present work, fat body transcriptome of adult female red palm weevil was analyzed, focusing on the identification of reproduction control genes. Transcriptome study was completed by means of next-generation sequencing (NGS) using Illumina Hiseq 2000 sequencing system. A total of 105,938,182 raw reads, 102,645,544 clean reads, and 9,238,098,960 clean nucleotides with a guanine-cytosine content of 40.31%, were produced. The processed transcriptome data resulted in 43,789 unique transcripts (with mean lengths of 1,172 bp). It was found that 20% of total unique transcripts shared up to 80%-100% sequence identity with homologous species, mainly the mountain pine beetle Dendroctonus ponderosae (59.9%) and red flour beetle Tribolium castaneum (26.9%). Nearly 25 annotated genes were predicted to be involved in red palm weevil reproduction, including five vitellogenin (Vg) transcripts. Among the five Vg gene transcripts, one was highly expressed compared with the other four (FPKM values of 1.963, 1.471, 1.028, and 1.017, respectively), and the five Vg gene transcripts were designated as RfVg, RfVg-equivalent1, RfVg-equivalent2, RfVg-equivalent3, and RfVg-equivalent4, respectively. The high expression level of RfVg verified by RT-polymerase chain reaction analysis suggested that RfVg is the primary functional Vg gene in red palm weevil. A high similarity of RfVg with other Coleopterans was also reflected in a phylogenetic tree, where RfVg was placed within the clade of the order Coleoptera. Awareness of the major genes that play critical roles in reproduction and proliferation of red palm weevil is valuable to understand their reproduction mechanism at a molecular level. In addition, for future molecular studies, the NGS dataset obtained will be useful and will promote the exploration of biotech-based control strategies against red palm weevil, a primary pest of palm trees.
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Affiliation(s)
- Khawaja Ghulam Rasool
- Economic Entomology Research Unit, Plant Protection Department, College of Food and Agriculture Sciences, King Saud University, Riyadh, Saudi Arabia
| | - Khalid Mehmood
- Economic Entomology Research Unit, Plant Protection Department, College of Food and Agriculture Sciences, King Saud University, Riyadh, Saudi Arabia
- Institute of Plant Protection, Faculty of Agriculture and Environmental Sciences, MNS-University of Agriculture, Multan, Pakistan
| | - Mureed Husain
- Economic Entomology Research Unit, Plant Protection Department, College of Food and Agriculture Sciences, King Saud University, Riyadh, Saudi Arabia
| | - Muhammad Tufail
- Economic Entomology Research Unit, Plant Protection Department, College of Food and Agriculture Sciences, King Saud University, Riyadh, Saudi Arabia
- Ghazi University, Dera Ghazi Khan, Punjab, Pakistan
| | - Waleed Saleh Alwaneen
- National Center for Agricultural Technology (NCAT), King Abdulaziz City for Science and Technology (KACST), Riyadh, Saudi Arabia
| | - Abdulrahman Saad Aldawood
- Economic Entomology Research Unit, Plant Protection Department, College of Food and Agriculture Sciences, King Saud University, Riyadh, Saudi Arabia
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Dias GB, Altammami MA, El-Shafie HAF, Alhoshani FM, Al-Fageeh MB, Bergman CM, Manee MM. Haplotype-resolved genome assembly enables gene discovery in the red palm weevil Rhynchophorus ferrugineus. Sci Rep 2021; 11:9987. [PMID: 33976235 PMCID: PMC8113489 DOI: 10.1038/s41598-021-89091-w] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2020] [Accepted: 04/08/2021] [Indexed: 01/22/2023] Open
Abstract
The red palm weevil Rhynchophorus ferrugineus (Coleoptera: Curculionidae) is an economically-important invasive species that attacks multiple species of palm trees around the world. A better understanding of gene content and function in R. ferrugineus has the potential to inform pest control strategies and thereby mitigate economic and biodiversity losses caused by this species. Using 10x Genomics linked-read sequencing, we produced a haplotype-resolved diploid genome assembly for R. ferrugineus from a single heterozygous individual with modest sequencing coverage (\documentclass[12pt]{minimal}
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\begin{document}$$\sim$$\end{document}∼ 62x). Benchmarking against conserved single-copy Arthropod orthologs suggests both pseudo-haplotypes in our R. ferrugineus genome assembly are highly complete with respect to gene content, and do not suffer from haplotype-induced duplication artifacts present in a recently published hybrid assembly for this species. Annotation of the larger pseudo-haplotype in our assembly provides evidence for 23,413 protein-coding loci in R. ferrugineus, including over 13,000 predicted proteins annotated with Gene Ontology terms and over 6000 loci independently supported by high-quality Iso-Seq transcriptomic data. Our assembly also includes 95% of R. ferrugineus chemosensory, detoxification and neuropeptide-related transcripts identified previously using RNA-seq transcriptomic data, and provides a platform for the molecular analysis of these and other functionally-relevant genes that can help guide management of this widespread insect pest.
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Affiliation(s)
- Guilherme B Dias
- Department of Genetics and Institute of Bioinformatics, University of Georgia, Athens, GA, 30602, USA.
| | - Musaad A Altammami
- National Center for Biotechnology,, King Abdulaziz City for Science and Technology, Riyadh, 11442, Saudi Arabia
| | - Hamadttu A F El-Shafie
- Date Palm Research Center of Excellence, King Faisal University, Al-Ahsa, 31982, Saudi Arabia
| | - Fahad M Alhoshani
- National Center for Biotechnology,, King Abdulaziz City for Science and Technology, Riyadh, 11442, Saudi Arabia
| | - Mohamed B Al-Fageeh
- Life Sciences and Environment Research Institute, King Abdulaziz City for Science and Technology, Riyadh, 11442, Saudi Arabia
| | - Casey M Bergman
- Department of Genetics and Institute of Bioinformatics, University of Georgia, Athens, GA, 30602, USA
| | - Manee M Manee
- National Center for Biotechnology,, King Abdulaziz City for Science and Technology, Riyadh, 11442, Saudi Arabia.
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Isolation, Identification, and Bioinformatic Analysis of Antibacterial Proteins and Peptides from Immunized Hemolymph of Red Palm Weevil Rhynchophorus ferrugineus. Biomolecules 2021; 11:biom11010083. [PMID: 33440876 PMCID: PMC7826645 DOI: 10.3390/biom11010083] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2020] [Revised: 01/01/2021] [Accepted: 01/05/2021] [Indexed: 01/09/2023] Open
Abstract
Red palm weevil (Rhynchophorus ferrugineus Olivier, 1791, Coleoptera: Curculionidae) is a destructive pest of palms, rapidly extending its native geographical range and causing large economic losses worldwide. The present work describes isolation, identification, and bioinformatic analysis of antibacterial proteins and peptides from the immunized hemolymph of this beetle. In total, 17 different bactericidal or bacteriostatic compounds were isolated via a series of high-pressure liquid chromatography steps, and their partial amino acid sequences were determined by N-terminal sequencing or by mass spectrometry. The bioinformatic analysis of the results facilitated identification and description of corresponding nucleotide coding sequences for each peptide and protein, based on the recently published R. ferrugineus transcriptome database. The identified compounds are represented by several well-known bactericidal factors: two peptides similar to defensins, one cecropin-A1-like peptide, and one attacin-B-like protein. Interestingly, we have also identified some unexpected compounds comprising five isoforms of pheromone-binding proteins as well as seven isoforms of odorant-binding proteins. The particular role of these factors in insect response to bacterial infection needs further investigation.
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Hazzouri KM, Sudalaimuthuasari N, Kundu B, Nelson D, Al-Deeb MA, Le Mansour A, Spencer JJ, Desplan C, Amiri KMA. The genome of pest Rhynchophorus ferrugineus reveals gene families important at the plant-beetle interface. Commun Biol 2020; 3:323. [PMID: 32581279 PMCID: PMC7314810 DOI: 10.1038/s42003-020-1060-8] [Citation(s) in RCA: 30] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2020] [Accepted: 06/08/2020] [Indexed: 11/17/2022] Open
Abstract
The red palm weevil, Rhynchophorus ferrugineus, infests palm plantations, leading to large financial losses and soil erosion. Pest-host interactions are poorly understood in R. ferrugineus, but the analysis of genetic diversity and pest origins will help advance efforts to eradicate this pest. We sequenced the genome of R. ferrugineus using a combination of paired-end Illumina sequencing (150 bp), Oxford Nanopore long reads, 10X Genomics and synteny analysis to produce an assembly with a scaffold N50 of ~60 Mb. Structural variations showed duplication of detoxifying and insecticide resistance genes (e.g., glutathione S-transferase, P450, Rdl). Furthermore, the evolution of gene families identified those under positive selection including one glycosyl hydrolase (GH16) gene family, which appears to result from horizontal gene transfer. This genome will be a valuable resource to understand insect evolution and behavior and to allow the genetic modification of key genes that will help control this pest.
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Affiliation(s)
- Khaled Michel Hazzouri
- Khalifa Center for Genetic Engineering and Biotechnology, United Arab Emirates University, PO Box 15551, Al Ain, UAE
| | | | - Biduth Kundu
- Department of Biology, United Arab Emirates University, PO Box 15551, Al Ain, UAE
| | - David Nelson
- Center for Genomics and Systems Biology, New York University Abu Dhabi, PO Box 129188, Abu Dhabi, UAE
| | - Mohammad Ali Al-Deeb
- Department of Biology, United Arab Emirates University, PO Box 15551, Al Ain, UAE
| | - Alain Le Mansour
- Date Palm Tissue Culture, United Arab Emirates University, PO Box 15551, Al Ain, UAE
| | - Johnston J Spencer
- Department of Entomology, Texas A&M University, TAMU 2475, College Station, TX, USA
| | - Claude Desplan
- Center for Genomics and Systems Biology, New York University Abu Dhabi, PO Box 129188, Abu Dhabi, UAE.
| | - Khaled M A Amiri
- Khalifa Center for Genetic Engineering and Biotechnology, United Arab Emirates University, PO Box 15551, Al Ain, UAE.
- Department of Biology, United Arab Emirates University, PO Box 15551, Al Ain, UAE.
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Salem H, Kirsch R, Pauchet Y, Berasategui A, Fukumori K, Moriyama M, Cripps M, Windsor D, Fukatsu T, Gerardo NM. Symbiont Digestive Range Reflects Host Plant Breadth in Herbivorous Beetles. Curr Biol 2020; 30:2875-2886.e4. [PMID: 32502409 DOI: 10.1016/j.cub.2020.05.043] [Citation(s) in RCA: 45] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2020] [Revised: 04/05/2020] [Accepted: 05/12/2020] [Indexed: 02/07/2023]
Abstract
Numerous adaptations are gained in light of a symbiotic lifestyle. Here, we investigated the obligate partnership between tortoise leaf beetles (Chrysomelidae: Cassidinae) and their pectinolytic Stammera symbionts to detail how changes to the bacterium's streamlined metabolic range can shape the digestive physiology and ecological opportunity of its herbivorous host. Comparative genomics of 13 Stammera strains revealed high functional conservation, highlighted by the universal presence of polygalacturonase, a primary pectinase targeting nature's most abundant pectic class, homogalacturonan (HG). Despite this conservation, we unexpectedly discovered a disparate distribution for rhamnogalacturonan lyase, a secondary pectinase hydrolyzing the pectic heteropolymer, rhamnogalacturonan I (RG-I). Consistent with the annotation of rhamnogalacturonan lyase in Stammera, cassidines are able to depolymerize RG-I relative to beetles whose symbionts lack the gene. Given the omnipresence of HG and RG-I in foliage, Stammera that encode pectinases targeting both substrates allow their hosts to overcome a greater diversity of plant cell wall polysaccharides and maximize access to the nutritionally rich cytosol. Possibly facilitated by their symbionts' expanded digestive range, cassidines additionally endowed with rhamnogalacturonan lyase appear to utilize a broader diversity of angiosperms than those beetles whose symbionts solely supplement polygalacturonase. Our findings highlight how symbiont metabolic diversity, in concert with host adaptations, may serve as a potential source of evolutionary innovations for herbivorous lineages.
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Affiliation(s)
- Hassan Salem
- Department of Biology, Emory University, Atlanta, GA 30322, USA; National Museum of Natural History, Smithsonian Institution, Washington, DC 20560, USA; Mutualisms Research Group, Max Planck Institute for Developmental Biology, Tübingen 72076, Germany.
| | - Roy Kirsch
- Department of Entomology, Max Planck Institute for Chemical Ecology, Jena 07745, Germany
| | - Yannick Pauchet
- Department of Entomology, Max Planck Institute for Chemical Ecology, Jena 07745, Germany
| | | | - Kayoko Fukumori
- National Institute for Advanced Industrial Science and Technology, Tsukuba 305-8566, Japan
| | - Minoru Moriyama
- National Institute for Advanced Industrial Science and Technology, Tsukuba 305-8566, Japan
| | - Michael Cripps
- AgResearch, Lincoln Research Centre, Lincoln 7608, New Zealand
| | - Donald Windsor
- Smithsonian Tropical Research Institute, Panama City 0843-03092, Panama
| | - Takema Fukatsu
- National Institute for Advanced Industrial Science and Technology, Tsukuba 305-8566, Japan
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Antony B, Johny J, Abdelazim MM, Jakše J, Al-Saleh MA, Pain A. Global transcriptome profiling and functional analysis reveal that tissue-specific constitutive overexpression of cytochrome P450s confers tolerance to imidacloprid in palm weevils in date palm fields. BMC Genomics 2019; 20:440. [PMID: 31151384 PMCID: PMC6545022 DOI: 10.1186/s12864-019-5837-4] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2018] [Accepted: 05/23/2019] [Indexed: 01/30/2023] Open
Abstract
Background Cytochrome P450-dependent monooxygenases (P450s), constituting one of the largest and oldest gene superfamilies found in many organisms from bacteria to humans, play a vital role in the detoxification and inactivation of endogenous toxic compounds. The use of various insecticides has increased over the last two decades, and insects have developed resistance to most of these compounds through the detoxifying function of P450s. In this study, we focused on the red palm weevil (RPW), Rhynchophorus ferrugineus, the most devastating pest of palm trees worldwide, and demonstrated through functional analysis that upregulation of P450 gene expression has evolved as an adaptation to insecticide stress arising from exposure to the neonicotinoid-class systematic insecticide imidacloprid. Results Based on the RPW global transcriptome analysis, we identified 101 putative P450 genes, including 77 likely encoding protein coding genes with ubiquitous expression. A phylogenetic analysis revealed extensive functional and species-specific diversification of RPW P450s, indicating that multiple CYPs actively participated in the detoxification process. We identified highly conserved paralogs of insect P450s that likely play a role in the development of resistance to imidacloprid: Drosophila Cyp6g1 (CYP6345J1) and Bemisia tabaci CYP4C64 (CYP4LE1). We performed a toxicity bioassay and evaluated the induction of P450s, followed by the identification of overexpressed P450s, including CYP9Z82, CYP6fra5, CYP6NR1, CYP6345J1 and CYP4BD4, which confer cross-resistance to imidacloprid. In addition, under imidacloprid insecticide stress in a date palm field, we observed increased expression of various P450 genes, with CYP9Z82, CYP4BD4, CYP6NR1 and CYP6345J1 being the most upregulated detoxification genes in RPWs. Expression profiling and cluster analysis revealed P450 genes with multiple patterns of induction and differential expression. Furthermore, we used RNA interference to knock down the overexpressed P450s, after which a toxicity bioassay and quantitative expression analysis revealed likely candidates involved in metabolic resistance against imidacloprid in RPW. Ingestion of double-stranded RNA (dsRNA) successfully knocked down the expression of CYP9Z82, CYP6NR1 and CYP345J1 and demonstrated that silencing of CYP345J1 and CYP6NR1 significantly decreased the survival rate of adult RPWs treated with imidacloprid, indicating that overexpression of these two P450s may play an important role in developing tolerance to imidacloprid in a date palm field. Conclusion Our study provides useful background information on imidacloprid-specific induction and overexpression of P450s, which may enable the development of diagnostic tools/markers for monitoring the spread of insecticide resistant RPWs. The observed trend of increasing tolerance to imidacloprid in the date palm field therefore indicated that strategies for resistance management are urgently needed. Electronic supplementary material The online version of this article (10.1186/s12864-019-5837-4) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Binu Antony
- Department of Plant Protection, College of Food and Agricultural Sciences, King Saud University, Chair of Date Palm Research, Riyadh, 11451, Saudi Arabia.
| | - Jibin Johny
- Department of Plant Protection, College of Food and Agricultural Sciences, King Saud University, Chair of Date Palm Research, Riyadh, 11451, Saudi Arabia
| | - Mahmoud M Abdelazim
- Department of Plant Protection, College of Food and Agricultural Sciences, King Saud University, Chair of Date Palm Research, Riyadh, 11451, Saudi Arabia
| | - Jernej Jakše
- Biotechnical Faculty, Agronomy Department, University of Ljubljana, SI-1000, Ljubljana, Slovenia
| | - Mohammed Ali Al-Saleh
- Department of Plant Protection, College of Food and Agricultural Sciences, King Saud University, Chair of Date Palm Research, Riyadh, 11451, Saudi Arabia
| | - Arnab Pain
- BESE Division, King Abdullah University of Science and Technology (KAUST), Thuwal, Jeddah, 23955-6900, Saudi Arabia
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Antony B, Johny J, Aldosari SA, Abdelazim MM. Identification and expression profiling of novel plant cell wall degrading enzymes from a destructive pest of palm trees, Rhynchophorus ferrugineus. INSECT MOLECULAR BIOLOGY 2017; 26:469-484. [PMID: 28556365 DOI: 10.1111/imb.12314] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
Plant cell wall degrading enzymes (PCWDEs) from insects were recently identified as a multigene family of proteins that consist primarily of glycoside hydrolases (GHs) and carbohydrate esterases (CEs) and play essential roles in the degradation of the cellulose/hemicellulose/pectin network in the invaded host plant. Here we applied transcriptomic and degenerate PCR approaches to identify the PCWDEs from a destructive pest of palm trees, Rhynchophorus ferrugineus, followed by a gut-specific and stage-specific differential expression analysis. We identified a total of 27 transcripts encoding GH family members and three transcripts of the CE family with cellulase, hemicellulase and pectinase activities. We also identified two GH9 candidates, which have not previously been reported from Curculionidae. The gut-specific quantitative expression analysis identified key cellulases, hemicellulases and pectinases from R. ferrugineus. The expression analysis revealed a pectin methylesterase, RferCE8u02, and a cellulase, GH45c34485, which showed the highest gut enriched expression. Comparison of PCWDE expression patterns revealed that cellulases and pectinases are significantly upregulated in the adult stages, and we observed specific high expression of the hemicellulase RferGH16c4170. Overall, our study revealed the potential of PCWDEs from R. ferrugineus, which may be useful in biotechnological applications and may represent new tools in R. ferrugineus pest management strategies.
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Affiliation(s)
- B Antony
- Department of Plant Protection, Chair of Date Palm Research, College of Food and Agricultural Sciences, King Saud University, Riyadh, Saudi Arabia
| | - J Johny
- Department of Plant Protection, Chair of Date Palm Research, College of Food and Agricultural Sciences, King Saud University, Riyadh, Saudi Arabia
| | - S A Aldosari
- Department of Plant Protection, Chair of Date Palm Research, College of Food and Agricultural Sciences, King Saud University, Riyadh, Saudi Arabia
| | - M M Abdelazim
- Department of Plant Protection, Chair of Date Palm Research, College of Food and Agricultural Sciences, King Saud University, Riyadh, Saudi Arabia
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Liu ZK, Wen JB. Transcriptomic Analysis of Eucryptorrhynchus chinensis (Coleoptera: Curculionidae) Using 454 Pyrosequencing Technology. JOURNAL OF INSECT SCIENCE (ONLINE) 2016; 16:iew067. [PMID: 27620556 PMCID: PMC5019023 DOI: 10.1093/jisesa/iew067] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/23/2015] [Accepted: 07/04/2016] [Indexed: 06/06/2023]
Abstract
Eucryptorrhynchus chinensis Olivier (Coleoptera: Curculionidae) is one of the most important pests of Ailanthus altissima; however, so far, no studies on the genome or transcriptome of E. chinensis have been reported. Using the Roche 454 FLX Titanium platform, an RNA pool obtained from E. chinensis eggs, larva, pupae, and adults was sequenced and assembled de novo to achieve maximum diversity of sampled transcripts. We obtained 1,441,137 (∼518 Mb) raw reads with an average length of 360 bp. After trimming, 89% qualified reads were produced and assembled into 35,509 isotigs with an average length of 440 bp, N50 of 1,048 bp, and 111,643 singletons. We generated 87,894 unigenes following a cluster analysis of the isotigs and singletons, and then functionally annotated the unigenes with gene descriptions. We obtained 23,363 GO assignments, and 12,724 unigenes were assigned to KOG. Based on these annotations, 294 biochemical pathways involved in growth, reproduction, and stress or immune responses were predicted. A total of 659,026 single nucleotide variants and 6,112 simple sequence repeats were detected. Our data provide comprehensive information on the sequence and possible functions of E. chinensis transcripts.
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Affiliation(s)
- Zhen-Kai Liu
- Beijing Key Laboratory of Forest Protection, College of Forestry, Beijing Forestry University, Beijing 100083, People's Republic of China (; )
| | - Jun-Bao Wen
- Beijing Key Laboratory of Forest Protection, College of Forestry, Beijing Forestry University, Beijing 100083, People's Republic of China (; )
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Mastore M, Arizza V, Manachini B, Brivio MF. Modulation of immune responses of Rhynchophorus ferrugineus (Insecta: Coleoptera) induced by the entomopathogenic nematode Steinernema carpocapsae (Nematoda: Rhabditida). INSECT SCIENCE 2015; 22:748-760. [PMID: 24846780 DOI: 10.1111/1744-7917.12141] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 04/21/2014] [Indexed: 06/03/2023]
Abstract
Aim of this study was to investigate relationships between the red palm weevil (RPW) Rhynchophorus ferrugineus (Olivier) and the entomopathogenic nematode Steinernema carpocapsae (EPN); particularly, the work was focused on the immune response of the insect host in naive larvae and after infection with the EPN. Two main immunological processes have been addressed: the activity and modulation of host prophenoloxidase-phenoloxidase (proPO) system, involved in melanization of not-self and hemocytes recognition processes responsible for not-self encapsulation. Moreover, immune depressive and immune evasive strategies of the parasite have been investigated. Our results suggest that RPW possess an efficient immune system, however in the early phase of infection, S. carpocapsae induces a strong inhibition of the host proPO system. In addition, host cell-mediated mechanisms of encapsulation, are completely avoided by the parasite, the elusive strategies of S. carpocapsae seem to be related to the structure of its body-surface, since induced alterations of the parasite cuticle resulted in the loss of its mimetic properties. S. carpocapsae before the release of its symbiotic bacteria, depress and elude RPW immune defenses, with the aim to arrange a favorable environment for its bacteria responsible of the septicemic death of the insect target.
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Affiliation(s)
- Maristella Mastore
- Department of Theoretical and Applied Sciences, University of Insubria, Varese, Italy
| | - Vincenzo Arizza
- Department of Sciences and Biological, Chemical and Pharmaceutical Technologies, University of Palermo, Palermo, Italy
| | - Barbara Manachini
- Department of Sciences and Biological, Chemical and Pharmaceutical Technologies, University of Palermo, Palermo, Italy
| | - Maurizio F Brivio
- Department of Theoretical and Applied Sciences, University of Insubria, Varese, Italy
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Yin A, Pan L, Zhang X, Wang L, Yin Y, Jia S, Liu W, Xin C, Liu K, Yu X, Sun G, Al-hudaib K, Hu S, Al-Mssallem IS, Yu J. Transcriptomic study of the red palm weevil Rhynchophorus ferrugineus embryogenesis. INSECT SCIENCE 2015; 22:65-82. [PMID: 24347559 DOI: 10.1111/1744-7917.12092] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 09/23/2013] [Indexed: 06/03/2023]
Abstract
The red palm weevil (RPW), Rhynchophorus ferrugineus (Coleoptera: Curculionidae), is an invasive, concealed and destructive tissue borer, and it becomes a lethal pest of the palm family of plants and has been reported to attack 20 palm species around the globe. Here we report a systematic transcriptomic study on embryogenesis of RPW, where we analyze the transcriptomes across five developmental stages of RPW embryogenesis, involving four embryonic stages (E1, E2, E3 and E4) and one larval stage (L1). Using the RNA-seq and next-generation platforms, we generated 80 to 91 million reads for each library and assemble 22 532 genes that are expressed at different embryonic stages. Among the total transcripts from the five embryonic development stages, we found that 30.45 % are differentially expressed, 10.10 % show stage-specificity and even a larger fraction, 62.88 %, exhibit constitutive expression in all the stages. We also analyzes the expression dynamics of several conserved signaling pathways (such as Hedgehog, JAK-STAT, Notch, TGF-β, Ras/MAPK and Wnt), as well as key developmental genes, including those related to apoptosis, axis formation, Hox complex, neurogenesis and segmentation. The datasets provide an essential resource for gene annotation and RPW functional genomics, including studies by using tools and concepts from multiple disciplines, such as development, physiology, biochemistry, molecular biology and genetics.
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Affiliation(s)
- An Yin
- Joint Center for Genomics Research (JCGR), King Abdulaziz City for Science and Technology (KACST) and Chinese Academy of Sciences (CAS), Riyadh, Kingdom of Saudi Arabia; CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China; University of Chinese Academy of Sciences, Beijing, China
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Rugman-Jones PF, Hoddle CD, Hoddle MS, Stouthamer R. The lesser of two weevils: molecular-genetics of pest palm weevil populations confirm Rhynchophorus vulneratus (Panzer 1798) as a valid species distinct from R. ferrugineus (Olivier 1790), and reveal the global extent of both. PLoS One 2013; 8:e78379. [PMID: 24143263 PMCID: PMC3797061 DOI: 10.1371/journal.pone.0078379] [Citation(s) in RCA: 45] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2013] [Accepted: 09/19/2013] [Indexed: 12/05/2022] Open
Abstract
The red palm weevil (RPW) is a major pest of palms. It is native to southeast Asia and Melanesia, but in recent decades has vastly expanded its range as the result of multiple accidental anthropogenic introductions into the Middle East, Mediterranean Basin, Caribbean, and U.S.A. Currently regarded as a single species, Rhynchophorus ferrugineus (Olivier), RPW displays remarkable color variation across its range, and consequently has a taxonomic history littered with new species descriptions and synonymization. We compared DNA sequences of the mitochondrial cytochrome oxidase subunit I (COI) gene from RPW populations throughout the native and invaded ranges, to investigate the specific status and invasion history of this serious economic pest, and to identify possible common routes of entry. Analyses of COI haplotype data provide conclusive support, corroborated by sequences of additional nuclear gene regions, for the existence of at least two predominantly allopatric species. The true R. ferrugineus is native only to the northern and western parts of continental southeast Asia, Sri Lanka and the Philippines, and is responsible for almost all invasive populations worldwide. In contrast, the second species, which is currently synonymized under R. ferrugineus and should be resurrected under the name R. vulneratus (Panzer), has a more southern distribution across Indonesia, and is responsible for only one invasive population; that in California, U.S.A. The distribution of COI haplotypes is used to discuss the possible existence of further cryptic species, sources and routes of entry of different invasive populations, and the implications of our findings for current control methods.
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Affiliation(s)
- Paul F. Rugman-Jones
- Department of Entomology, University of California Riverside, Riverside, California, United States of America
- Center for Invasive Species Research, University of California Riverside, Riverside, California, United States of America
- * E-mail:
| | - Christina D. Hoddle
- Department of Entomology, University of California Riverside, Riverside, California, United States of America
- Center for Invasive Species Research, University of California Riverside, Riverside, California, United States of America
| | - Mark S. Hoddle
- Department of Entomology, University of California Riverside, Riverside, California, United States of America
- Center for Invasive Species Research, University of California Riverside, Riverside, California, United States of America
| | - Richard Stouthamer
- Department of Entomology, University of California Riverside, Riverside, California, United States of America
- Center for Invasive Species Research, University of California Riverside, Riverside, California, United States of America
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