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Lin JJ, Wang FY, Chung WY, Wang TY. The genomic evolution of visual opsin genes in amphibians. Vision Res 2024; 222:108447. [PMID: 38906036 DOI: 10.1016/j.visres.2024.108447] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2023] [Revised: 05/15/2024] [Accepted: 05/16/2024] [Indexed: 06/23/2024]
Abstract
Among tetrapod (terrestrial) vertebrates, amphibians remain more closely tied to an amphibious lifestyle than amniotes, and their visual opsin genes may be adapted to this lifestyle. Previous studies have discussed physiological, morphological, and molecular changes in the evolution of amphibian vision. We predicted the locations of the visual opsin genes, their neighboring genes, and the tuning sites of the visual opsins, in 39 amphibian genomes. We found that all of the examined genomes lacked the Rh2 gene. The caecilian genomes have further lost the SWS1 and SWS2 genes; only the Rh1 and LWS genes were retained. The loss of the SWS1 and SWS2 genes in caecilians may be correlated with their cryptic lifestyles. The opsin gene syntenies were predicted to be highly similar to those of other bony vertebrates. Moreover, dual syntenies were identified in allotetraploid Xenopus laevis and X. borealis. Tuning site analysis showed that only some Caudata species might have UV vision. In addition, the S164A that occurred several times in LWS evolution might either functionally compensate for the Rh2 gene loss or fine-tuning visual adaptation. Our study provides the first genomic evidence for a caecilian LWS gene and a genomic viewpoint of visual opsin genes by reviewing the gains and losses of visual opsin genes, the rearrangement of syntenies, and the alteration of spectral tuning in the course of amphibians' evolution.
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Affiliation(s)
- Jinn-Jy Lin
- National Center for High-performance Computing, National Applied Research Laboratories, Hsinchu, Taiwan
| | - Feng-Yu Wang
- Taiwan Ocean Research Institute, National Applied Research Laboratories, Kaohsiung, Taiwan
| | - Wen-Yu Chung
- Department of Computer Science and Information Engineering, National Kaohsiung University of Science and Technology, Kaohsiung, Taiwan
| | - Tzi-Yuan Wang
- Biodiversity Research Center, Academia Sinica, Taipei, Taiwan.
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Schott RK, Fujita MK, Streicher JW, Gower DJ, Thomas KN, Loew ER, Bamba Kaya AG, Bittencourt-Silva GB, Guillherme Becker C, Cisneros-Heredia D, Clulow S, Davila M, Firneno TJ, Haddad CFB, Janssenswillen S, Labisko J, Maddock ST, Mahony M, Martins RA, Michaels CJ, Mitchell NJ, Portik DM, Prates I, Roelants K, Roelke C, Tobi E, Woolfolk M, Bell RC. Diversity and Evolution of Frog Visual Opsins: Spectral Tuning and Adaptation to Distinct Light Environments. Mol Biol Evol 2024; 41:msae049. [PMID: 38573520 PMCID: PMC10994157 DOI: 10.1093/molbev/msae049] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2023] [Revised: 02/07/2024] [Accepted: 02/26/2024] [Indexed: 04/05/2024] Open
Abstract
Visual systems adapt to different light environments through several avenues including optical changes to the eye and neurological changes in how light signals are processed and interpreted. Spectral sensitivity can evolve via changes to visual pigments housed in the retinal photoreceptors through gene duplication and loss, differential and coexpression, and sequence evolution. Frogs provide an excellent, yet understudied, system for visual evolution research due to their diversity of ecologies (including biphasic aquatic-terrestrial life cycles) that we hypothesize imposed different selective pressures leading to adaptive evolution of the visual system, notably the opsins that encode the protein component of the visual pigments responsible for the first step in visual perception. Here, we analyze the diversity and evolution of visual opsin genes from 93 new eye transcriptomes plus published data for a combined dataset spanning 122 frog species and 34 families. We find that most species express the four visual opsins previously identified in frogs but show evidence for gene loss in two lineages. Further, we present evidence of positive selection in three opsins and shifts in selective pressures associated with differences in habitat and life history, but not activity pattern. We identify substantial novel variation in the visual opsins and, using microspectrophotometry, find highly variable spectral sensitivities, expanding known ranges for all frog visual pigments. Mutations at spectral-tuning sites only partially account for this variation, suggesting that frogs have used tuning pathways that are unique among vertebrates. These results support the hypothesis of adaptive evolution in photoreceptor physiology across the frog tree of life in response to varying environmental and ecological factors and further our growing understanding of vertebrate visual evolution.
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Affiliation(s)
- Ryan K Schott
- Department of Biology and Centre for Vision Research, York University, Toronto, Ontario, Canada
- Department of Vertebrate Zoology, National Museum of Natural History, Smithsonian Institution, Washington, DC, USA
| | - Matthew K Fujita
- Department of Biology, Amphibian and Reptile Diversity Research Center, The University of Texas at Arlington, Arlington, TX, USA
| | | | | | - Kate N Thomas
- Department of Biology, Amphibian and Reptile Diversity Research Center, The University of Texas at Arlington, Arlington, TX, USA
- Natural History Museum, London, UK
| | - Ellis R Loew
- Department of Biomedical Sciences, Cornell University College of Veterinary Medicine, Ithaca, NY, USA
| | | | | | - C Guillherme Becker
- Department of Biology and One Health Microbiome Center, Center for Infectious Disease Dynamics, The Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA, USA
| | - Diego Cisneros-Heredia
- Laboratorio de Zoología Terrestre, Instituto de Biodiversidad Tropical IBIOTROP, Colegio de Ciencias Biológicas y Ambientales, Universidad San Francisco de Quito USFQ, Quito, Ecuador
| | - Simon Clulow
- Centre for Conservation Ecology and Genomics, Institute for Applied Ecology, University of Canberra, Bruce, ACT, Australia
| | - Mateo Davila
- Laboratorio de Zoología Terrestre, Instituto de Biodiversidad Tropical IBIOTROP, Colegio de Ciencias Biológicas y Ambientales, Universidad San Francisco de Quito USFQ, Quito, Ecuador
| | - Thomas J Firneno
- Department of Biological Sciences, University of Denver, Denver, USA
| | - Célio F B Haddad
- Department of Biodiversity and Center of Aquaculture—CAUNESP, I.B., São Paulo State University, Rio Claro, São Paulo, Brazil
| | - Sunita Janssenswillen
- Amphibian Evolution Lab, Biology Department, Vrije Universiteit Brussel, Brussels, Belgium
| | - Jim Labisko
- Natural History Museum, London, UK
- Centre for Biodiversity and Environment Research, Department of Genetics, Evolution and Environment, University College London, London, UK
- Island Biodiversity and Conservation Centre, University of Seychelles, Mahé, Seychelles
| | - Simon T Maddock
- Natural History Museum, London, UK
- Island Biodiversity and Conservation Centre, University of Seychelles, Mahé, Seychelles
- School of Natural and Environmental Sciences, Newcastle University, Newcastle Upon Tyne, UK
| | - Michael Mahony
- Department of Biological Sciences, The University of Newcastle, Newcastle 2308, Australia
| | - Renato A Martins
- Programa de Pós-graduação em Conservação da Fauna, Universidade Federal de São Carlos, São Carlos, Brazil
| | | | - Nicola J Mitchell
- School of Biological Sciences, The University of Western Australia, Crawley, WA 6009, Australia
| | - Daniel M Portik
- Department of Herpetology, California Academy of Sciences, San Francisco, CA, USA
| | - Ivan Prates
- Department of Biology, Lund University, Lund, Sweden
| | - Kim Roelants
- Amphibian Evolution Lab, Biology Department, Vrije Universiteit Brussel, Brussels, Belgium
| | - Corey Roelke
- Department of Biology, Amphibian and Reptile Diversity Research Center, The University of Texas at Arlington, Arlington, TX, USA
| | - Elie Tobi
- Gabon Biodiversity Program, Center for Conservation and Sustainability, Smithsonian National Zoo and Conservation Biology Institute, Gamba, Gabon
| | - Maya Woolfolk
- Department of Vertebrate Zoology, National Museum of Natural History, Smithsonian Institution, Washington, DC, USA
- Department of Organismic and Evolutionary Biology, Museum of Comparative Zoology, Harvard University, Cambridge, MA, USA
| | - Rayna C Bell
- Department of Vertebrate Zoology, National Museum of Natural History, Smithsonian Institution, Washington, DC, USA
- Department of Herpetology, California Academy of Sciences, San Francisco, CA, USA
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3
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Wan YC, Navarrete Méndez MJ, O'Connell LA, Uricchio LH, Roland AB, Maan ME, Ron SR, Betancourth-Cundar M, Pie MR, Howell KA, Richards-Zawacki CL, Cummings ME, Cannatella DC, Santos JC, Tarvin RD. Selection on Visual Opsin Genes in Diurnal Neotropical Frogs and Loss of the SWS2 Opsin in Poison Frogs. Mol Biol Evol 2023; 40:msad206. [PMID: 37791477 PMCID: PMC10548314 DOI: 10.1093/molbev/msad206] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/05/2023] Open
Abstract
Amphibians are ideal for studying visual system evolution because their biphasic (aquatic and terrestrial) life history and ecological diversity expose them to a broad range of visual conditions. Here, we evaluate signatures of selection on visual opsin genes across Neotropical anurans and focus on three diurnal clades that are well-known for the concurrence of conspicuous colors and chemical defense (i.e., aposematism): poison frogs (Dendrobatidae), Harlequin toads (Bufonidae: Atelopus), and pumpkin toadlets (Brachycephalidae: Brachycephalus). We found evidence of positive selection on 44 amino acid sites in LWS, SWS1, SWS2, and RH1 opsin genes, of which one in LWS and two in RH1 have been previously identified as spectral tuning sites in other vertebrates. Given that anurans have mostly nocturnal habits, the patterns of selection revealed new sites that might be important in spectral tuning for frogs, potentially for adaptation to diurnal habits and for color-based intraspecific communication. Furthermore, we provide evidence that SWS2, normally expressed in rod cells in frogs and some salamanders, has likely been lost in the ancestor of Dendrobatidae, suggesting that under low-light levels, dendrobatids have inferior wavelength discrimination compared to other frogs. This loss might follow the origin of diurnal activity in dendrobatids and could have implications for their behavior. Our analyses show that assessments of opsin diversification in across taxa could expand our understanding of the role of sensory system evolution in ecological adaptation.
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Affiliation(s)
- Yin Chen Wan
- Museum of Vertebrate Zoology and Department of Integrative Biology, University of California Berkeley, Berkeley, CA, USA
- Department of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada
- School of Biomolecular and Biomedical Science, University College Dublin, Belfield, Dublin, Ireland
| | - María José Navarrete Méndez
- Museum of Vertebrate Zoology and Department of Integrative Biology, University of California Berkeley, Berkeley, CA, USA
- Museo de Zoología, Facultad de Ciencias Exactas y Naturales, Pontificia Universidad Católica del Ecuador, Quito, Ecuador
| | | | - Lawrence H Uricchio
- Museum of Vertebrate Zoology and Department of Integrative Biology, University of California Berkeley, Berkeley, CA, USA
- Department of Biology, Tufts University, Medford, MA, USA
| | - Alexandre-Benoit Roland
- FAS Center for Systems Biology, Harvard University, Cambridge, MA, USA
- Research Centre on Animal Cognition (CRCA), Centre for Integrative Biology (CBI), UMR5169 CNRS, Toulouse University, Toulouse, France
| | - Martine E Maan
- Groningen Institute for Evolutionary Life Sciences, University of Groningen, Groningen, The Netherlands
| | - Santiago R Ron
- Museo de Zoología, Facultad de Ciencias Exactas y Naturales, Pontificia Universidad Católica del Ecuador, Quito, Ecuador
| | | | - Marcio R Pie
- Department of Zoology, Universidade Federal do Paraná, Curitiba, Brazil
- Biology Department, Edge Hill University, Ormskirk, United Kingdom
| | - Kimberly A Howell
- Department of Biological Sciences, University of Pittsburgh, Pittsburgh, PA, USA
| | | | - Molly E Cummings
- Department of Integrative Biology, University of Texas at Austin, Austin, TX, USA
| | - David C Cannatella
- Department of Integrative Biology, University of Texas at Austin, Austin, TX, USA
- Biodiversity Center, University of Texas at Austin, Austin, TX, USA
| | - Juan C Santos
- Department of Biological Sciences, St. John's University, New York City, NY, USA
| | - Rebecca D Tarvin
- Museum of Vertebrate Zoology and Department of Integrative Biology, University of California Berkeley, Berkeley, CA, USA
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4
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Troscianko J. OSpRad: an open-source, low-cost, high-sensitivity spectroradiometer. J Exp Biol 2023; 226:jeb245416. [PMID: 37334657 PMCID: PMC10357011 DOI: 10.1242/jeb.245416] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2023] [Accepted: 06/12/2023] [Indexed: 06/20/2023]
Abstract
Spectroradiometry is a vital tool in a wide range of biological, physical, astronomical and medical fields, yet its cost and accessibility are frequent barriers to use. Research into the effects of artificial light at night (ALAN) further compounds these difficulties with requirements for sensitivity to extremely low light levels across the ultraviolet to human-visible spectrum. Here, I present an open-source spectroradiometry (OSpRad) system that meets these design challenges. The system utilises an affordable miniature spectrometer chip (Hamamatsu C12880MA), combined with an automated shutter and cosine-corrector, microprocessor controller, and graphical user interface 'app' that can be used with smartphones or desktop computers. The system has high ultraviolet sensitivity and can measure spectral radiance at 0.001 cd m-2 and irradiance at 0.005 lx, covering the vast majority of real-world night-time light levels. The OSpRad system's low cost and high sensitivity make it well suited to a range of spectrometry and ALAN research.
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Affiliation(s)
- Jolyon Troscianko
- Centre for Ecology and Conservation, University of Exeter, Penryn Campus, Treliever Road, Penryn, Cornwall TR10 9FE, UK
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5
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Schott RK, Bell RC, Loew ER, Thomas KN, Gower DJ, Streicher JW, Fujita MK. Transcriptomic evidence for visual adaptation during the aquatic to terrestrial metamorphosis in leopard frogs. BMC Biol 2022; 20:138. [PMID: 35761245 PMCID: PMC9238225 DOI: 10.1186/s12915-022-01341-z] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2021] [Accepted: 05/30/2022] [Indexed: 12/29/2022] Open
Abstract
BACKGROUND Differences in morphology, ecology, and behavior through ontogeny can result in opposing selective pressures at different life stages. Most animals, however, transition through two or more distinct phenotypic phases, which is hypothesized to allow each life stage to adapt more freely to its ecological niche. How this applies to sensory systems, and in particular how sensory systems adapt across life stages at the molecular level, is not well understood. Here, we used whole-eye transcriptomes to investigate differences in gene expression between tadpole and juvenile southern leopard frogs (Lithobates sphenocephalus), which rely on vision in aquatic and terrestrial light environments, respectively. Because visual physiology changes with light levels, we also tested the effect of light and dark exposure. RESULTS We found 42% of genes were differentially expressed in the eyes of tadpoles versus juveniles and 5% for light/dark exposure. Analyses targeting a curated subset of visual genes revealed significant differential expression of genes that control aspects of visual function and development, including spectral sensitivity and lens composition. Finally, microspectrophotometry of photoreceptors confirmed shifts in spectral sensitivity predicted by the expression results, consistent with adaptation to distinct light environments. CONCLUSIONS Overall, we identified extensive expression-level differences in the eyes of tadpoles and juveniles related to observed morphological and physiological changes through metamorphosis and corresponding adaptive shifts to improve vision in the distinct aquatic and terrestrial light environments these frogs inhabit during their life cycle. More broadly, these results suggest that decoupling of gene expression can mediate the opposing selection pressures experienced by organisms with complex life cycles that inhabit different environmental conditions throughout ontogeny.
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Affiliation(s)
- Ryan K Schott
- Department of Biology, York University, Toronto, Ontario, Canada. .,Department of Vertebrate Zoology, National Museum of Natural History, Smithsonian Institution, Washington DC, USA.
| | - Rayna C Bell
- Department of Vertebrate Zoology, National Museum of Natural History, Smithsonian Institution, Washington DC, USA.,Department of Herpetology, California Academy of Sciences, San Francisco, CA, USA
| | - Ellis R Loew
- Department of Biomedical Sciences, Cornell University College of Veterinary Medicine, Ithaca, NY, USA
| | - Kate N Thomas
- Department of Life Sciences, The Natural History Museum, London, UK
| | - David J Gower
- Department of Life Sciences, The Natural History Museum, London, UK
| | | | - Matthew K Fujita
- Department of Biology, Amphibian and Reptile Diversity Research Center, The University of Texas at Arlington, Arlington, TX, USA
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6
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Schott RK, Perez L, Kwiatkowski MA, Imhoff V, Gumm JM. Evolutionary analyses of visual opsin genes in frogs and toads: Diversity, duplication, and positive selection. Ecol Evol 2022; 12:e8595. [PMID: 35154658 PMCID: PMC8820127 DOI: 10.1002/ece3.8595] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2021] [Revised: 01/07/2022] [Accepted: 01/08/2022] [Indexed: 01/12/2023] Open
Abstract
Among major vertebrate groups, anurans (frogs and toads) are understudied with regard to their visual systems, and little is known about variation among species that differ in ecology. We sampled North American anurans representing diverse evolutionary and life histories that likely possess visual systems adapted to meet different ecological needs. Using standard molecular techniques, visual opsin genes, which encode the protein component of visual pigments, were obtained from anuran retinas. Additionally, we extracted the visual opsins from publicly available genome and transcriptome assemblies, further increasing the phylogenetic and ecological diversity of our dataset to 33 species in total. We found that anurans consistently express four visual opsin genes (RH1, LWS, SWS1, and SWS2, but not RH2) even though reported photoreceptor complements vary widely among species. The proteins encoded by these genes showed considerable sequence variation among species, including at sites known to shift the spectral sensitivity of visual pigments in other vertebrates and had conserved substitutions that may be related to dim-light adaptation. Using molecular evolutionary analyses of selection (dN/dS) we found significant evidence for positive selection at a subset of sites in the dim-light rod opsin gene RH1 and the long wavelength sensitive cone opsin LWS. The function of sites inferred to be under positive selection are largely unknown, but a few are likely to affect spectral sensitivity and other visual pigment functions based on proximity to previously identified sites in other vertebrates. We also found the first evidence of visual opsin duplication in an amphibian with the duplication of the LWS gene in the African bullfrog, which had distinct LWS copies on the sex chromosomes suggesting the possibility of sex-specific visual adaptation. Taken together, our results indicate that ecological factors, such as habitat and life history, as well as behavior, may be driving changes to anuran visual systems.
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Affiliation(s)
- Ryan K. Schott
- Department of BiologyYork UniversityTorontoOntarioCanada
- Department of Vertebrate ZoologyNational Museum of Natural HistorySmithsonian InstitutionWashingtonDistrict of ColumbiaUSA
| | - Leah Perez
- Department of BiologyStephen F. Austin State UniversityNacogdochesTexasUSA
| | | | - Vance Imhoff
- Southern Nevada Fish and Wildlife OfficeUS Fish and Wildlife ServiceLas VegasNevadaUSA
| | - Jennifer M. Gumm
- Department of BiologyStephen F. Austin State UniversityNacogdochesTexasUSA
- Ash Meadows Fish Conservation FacilityUS Fish and Wildlife ServiceAmargosa ValleyNevadaUSA
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Phototransduction in Anuran Green Rods: Origins of Extra-Sensitivity. Int J Mol Sci 2021; 22:ijms222413400. [PMID: 34948198 PMCID: PMC8707487 DOI: 10.3390/ijms222413400] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2021] [Revised: 12/06/2021] [Accepted: 12/10/2021] [Indexed: 01/13/2023] Open
Abstract
Green rods (GRs) represent a unique type of photoreceptor to be found in the retinas of anuran amphibians. These cells harbor a cone-specific blue-sensitive visual pigment but exhibit morphology of the outer segment typical for classic red rods (RRs), which makes them a perspective model object for studying cone–rod transmutation. In the present study, we performed detailed electrophysiological examination of the light sensitivity, response kinetics and parameters of discrete and continuous dark noise in GRs of the two anuran species: cane toad and marsh frog. Our results confirm that anuran GRs are highly specialized nocturnal vision receptors. Moreover, their rate of phototransduction quenching appeared to be about two-times slower than in RRs, which makes them even more efficient single photon detectors. The operating intensity ranges for two rod types widely overlap supposedly allowing amphibians to discriminate colors in the scotopic region. Unexpectedly for typical cone pigments but in line with some previous reports, the spontaneous isomerization rate of the GR visual pigment was found to be the same as for rhodopsin of RRs. Thus, our results expand the knowledge on anuran GRs and show that these are even more specialized single photon catchers than RRs, which allows us to assign them a status of “super-rods”.
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8
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Corbo JC. Vitamin A 1/A 2 chromophore exchange: Its role in spectral tuning and visual plasticity. Dev Biol 2021; 475:145-155. [PMID: 33684435 DOI: 10.1016/j.ydbio.2021.03.002] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2021] [Accepted: 03/01/2021] [Indexed: 01/20/2023]
Abstract
Vertebrate rod and cone photoreceptors detect light via a specialized organelle called the outer segment. This structure is packed with light-sensitive molecules known as visual pigments that consist of a G-protein-coupled, seven-transmembrane protein known as opsin, and a chromophore prosthetic group, either 11-cis retinal ('A1') or 11-cis 3,4-didehydroretinal ('A2'). The enzyme cyp27c1 converts A1 into A2 in the retinal pigment epithelium. Replacing A1 with A2 in a visual pigment red-shifts its spectral sensitivity and broadens its bandwidth of absorption at the expense of decreased photosensitivity and increased thermal noise. The use of vitamin A2-based visual pigments is strongly associated with the occupation of aquatic habitats in which the ambient light is red-shifted. By modulating the A1/A2 ratio in the retina, an organism can dynamically tune the spectral sensitivity of the visual system to better match the predominant wavelengths of light in its environment. As many as a quarter of all vertebrate species utilize A2, at least during a part of their life cycle or under certain environmental conditions. A2 utilization therefore represents an important and widespread mechanism of sensory plasticity. This review provides an up-to-date account of the A1/A2 chromophore exchange system.
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Affiliation(s)
- Joseph C Corbo
- Department of Pathology and Immunology, Washington University School of Medicine, St. Louis, 63110, United States.
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9
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Goedert D, Clement D, Calsbeek R. Evolutionary trade‐offs may interact with physiological constraints to maintain color variation. ECOL MONOGR 2020. [DOI: 10.1002/ecm.1430] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Debora Goedert
- Department of Biological Sciences Dartmouth College Hanover03755 New Hampshire USA
- Ministry of Education of Brazil CAPES Foundation Brasília DF95616Brazil
| | - Dale Clement
- Department of Biological Sciences Dartmouth College Hanover03755 New Hampshire USA
| | - Ryan Calsbeek
- Department of Biological Sciences Dartmouth College Hanover03755 New Hampshire USA
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10
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Donner K, Yovanovich CAM. A frog's eye view: Foundational revelations and future promises. Semin Cell Dev Biol 2020; 106:72-85. [PMID: 32466970 DOI: 10.1016/j.semcdb.2020.05.011] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2020] [Revised: 05/13/2020] [Accepted: 05/13/2020] [Indexed: 12/16/2022]
Abstract
From the mid-19th century until the 1980's, frogs and toads provided important research models for many fundamental questions in visual neuroscience. In the present century, they have been largely neglected. Yet they are animals with highly developed vision, a complex retina built on the basic vertebrate plan, an accessible brain, and an experimentally useful behavioural repertoire. They also offer a rich diversity of species and life histories on a reasonably restricted physiological and evolutionary background. We suggest that important insights may be gained from revisiting classical questions in anurans with state-of-the-art methods. At the input to the system, this especially concerns the molecular evolution of visual pigments and photoreceptors, at the output, the relation between retinal signals, brain processing and behavioural decision-making.
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Affiliation(s)
- Kristian Donner
- Molecular and Integrative Biosciences Research Program, Faculty of Biological and Environmental Sciences, University of Helsinki, Finland; PB 65 (Viikinkaari 1), 00014, University of Helsinki, Finland.
| | - Carola A M Yovanovich
- Department of Zoology, Institute of Biosciences, University of São Paulo, Brazil; Rua do Matão, Trav. 14, N°101, São Paulo, SP, 05508-090, Brazil.
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11
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12
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Yovanovich CAM, Pierotti MER, Rodrigues MT, Grant T. A dune with a view: the eyes of a neotropical fossorial lizard. Front Zool 2019; 16:17. [PMID: 31198433 PMCID: PMC6558795 DOI: 10.1186/s12983-019-0320-2] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2019] [Accepted: 05/23/2019] [Indexed: 12/19/2022] Open
Abstract
Background Lizards are excellent models to study the adaptations of the visual system to different scenarios, and surface-dwelling representatives have been relatively well studied. In contrast, very little is known about the functional anatomy of the eyes of fossorial lineages, and properties such as the light transmission by the ocular media have never been characterised in any fossorial species. Some lizards in the family Gymnophthalmidae endemic to the sand dunes of North Eastern Brazil have evolved sand-burrowing habits and nocturnal activity. Lizards in the sister group to Gymnophthalmidae, the family Teiidae, have decidedly diurnal and epigeal lifestyles, yet they are equally poorly known in terms of visual systems. We focussed on the eye anatomy, photoreceptor morphology and light transmittance properties of the ocular media and oil droplets in the gymnophthalmid Calyptommatus nicterus and the teiid Ameivula ocellifera. Results The general organisation of the eyes of the fossorial nocturnal C. nicterus and the epigeal diurnal A. ocellifera is remarkably similar. The lenses are highly transmissive to light well into the ultraviolet part of the spectrum. The photoreceptors have the typical cone morphology, with narrow short outer segments and oil droplets. The main difference between the two species is that C. nicterus has only colourless oil droplets, whereas A. ocellifera has colourless as well as green-yellow and pale-orange droplets. Conclusions Our results challenge the assumption that fossorial lizards undergo loss of visual function, a claim that is usually guided by the reduced size and external morphology of their eyes. In the case of C. nicterus, the visual system is well suited for vision in bright light and shows specialisations that improve sensitivity in dim light, suggesting that they might perform some visually-guided behaviour above the surface at the beginning or the end of their daily activity period, when light levels are relatively high in their open dunes habitat. This work highlights how studies on the functional anatomy of sensory systems can provide insights into the habits of secretive species.
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Affiliation(s)
- Carola A M Yovanovich
- 1Department of Zoology, Institute of Biosciences, University of São Paulo, São Paulo, Brazil
| | - Michele E R Pierotti
- 1Department of Zoology, Institute of Biosciences, University of São Paulo, São Paulo, Brazil.,2Naos Marine Laboratories, Smithsonian Tropical Research Institute, Panama City, Panama
| | | | - Taran Grant
- 1Department of Zoology, Institute of Biosciences, University of São Paulo, São Paulo, Brazil
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13
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Ogurtsov SV, Antipov VA, Permyakov MG. Sex differences in exploratory behaviour of the common toad, Bufo bufo. ETHOL ECOL EVOL 2018. [DOI: 10.1080/03949370.2018.1459864] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
Affiliation(s)
- Sergei V. Ogurtsov
- Department of Vertebrate Zoology, Faculty of Biology, Lomonosov Moscow State University, Leninskie Gory d. 1, k. 12, Moscow 119234, Russia
| | - Vladislav A. Antipov
- Department of Vertebrate Zoology, Faculty of Biology, Lomonosov Moscow State University, Leninskie Gory d. 1, k. 12, Moscow 119234, Russia
| | - Mikhail G. Permyakov
- Department of Vertebrate Zoology, Faculty of Biology, Lomonosov Moscow State University, Leninskie Gory d. 1, k. 12, Moscow 119234, Russia
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14
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Kelber A, Yovanovich C, Olsson P. Thresholds and noise limitations of colour vision in dim light. Philos Trans R Soc Lond B Biol Sci 2017; 372:rstb.2016.0065. [PMID: 28193810 DOI: 10.1098/rstb.2016.0065] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/07/2016] [Indexed: 01/15/2023] Open
Abstract
Colour discrimination is based on opponent photoreceptor interactions, and limited by receptor noise. In dim light, photon shot noise impairs colour vision, and in vertebrates, the absolute threshold of colour vision is set by dark noise in cones. Nocturnal insects (e.g. moths and nocturnal bees) and vertebrates lacking rods (geckos) have adaptations to reduce receptor noise and use chromatic vision even in very dim light. In contrast, vertebrates with duplex retinae use colour-blind rod vision when noisy cone signals become unreliable, and their transition from cone- to rod-based vision is marked by the Purkinje shift. Rod-cone interactions have not been shown to improve colour vision in dim light, but may contribute to colour vision in mesopic light intensities. Frogs and toads that have two types of rods use opponent signals from these rods to control phototaxis even at their visual threshold. However, for tasks such as prey or mate choice, their colour discrimination abilities fail at brighter light intensities, similar to other vertebrates, probably limited by the dark noise in cones.This article is part of the themed issue 'Vision in dim light'.
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Affiliation(s)
- Almut Kelber
- Department of Biology, Lund University, Sölvegatan 35, 22362 Lund, Sweden
| | - Carola Yovanovich
- Department of Biology, Lund University, Sölvegatan 35, 22362 Lund, Sweden
| | - Peter Olsson
- Department of Biology, Lund University, Sölvegatan 35, 22362 Lund, Sweden
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15
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Yovanovich CAM, Koskela SM, Nevala N, Kondrashev SL, Kelber A, Donner K. The dual rod system of amphibians supports colour discrimination at the absolute visual threshold. Philos Trans R Soc Lond B Biol Sci 2017; 372:20160066. [PMID: 28193811 PMCID: PMC5312016 DOI: 10.1098/rstb.2016.0066] [Citation(s) in RCA: 48] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/17/2016] [Indexed: 01/10/2023] Open
Abstract
The presence of two spectrally different kinds of rod photoreceptors in amphibians has been hypothesized to enable purely rod-based colour vision at very low light levels. The hypothesis has never been properly tested, so we performed three behavioural experiments at different light intensities with toads (Bufo) and frogs (Rana) to determine the thresholds for colour discrimination. The thresholds of toads were different in mate choice and prey-catching tasks, suggesting that the differential sensitivities of different spectral cone types as well as task-specific factors set limits for the use of colour in these behavioural contexts. In neither task was there any indication of rod-based colour discrimination. By contrast, frogs performing phototactic jumping were able to distinguish blue from green light down to the absolute visual threshold, where vision relies only on rod signals. The remarkable sensitivity of this mechanism comparing signals from the two spectrally different rod types approaches theoretical limits set by photon fluctuations and intrinsic noise. Together, the results indicate that different pathways are involved in processing colour cues depending on the ecological relevance of this information for each task.This article is part of the themed issue 'Vision in dim light'.
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Affiliation(s)
| | - Sanna M Koskela
- Department of Biosciences, University of Helsinki, PO Box 65 (Viikinkaari 1), 00014 Helsinki, Finland
| | - Noora Nevala
- Department of Biosciences, University of Helsinki, PO Box 65 (Viikinkaari 1), 00014 Helsinki, Finland
| | - Sergei L Kondrashev
- A.V. Zhirmunsky Institute of Marine Biology, Far Eastern Branch of the Russian Academy of Sciences, ul. Palchevskogo 17, 690041 Vladivostok, Russia
| | - Almut Kelber
- Department of Biology, Lund University, Sölvegatan 35, 22362 Lund, Sweden
| | - Kristian Donner
- Department of Biosciences, University of Helsinki, PO Box 65 (Viikinkaari 1), 00014 Helsinki, Finland
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16
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Goutte S, Dubois A, Howard SD, Marquez R, Rowley JJL, Dehling JM, Grandcolas P, Rongchuan X, Legendre F. Environmental constraints and call evolution in torrent-dwelling frogs. Evolution 2016; 70:811-26. [PMID: 26960074 DOI: 10.1111/evo.12903] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2014] [Revised: 02/09/2016] [Accepted: 02/16/2016] [Indexed: 02/02/2023]
Abstract
Although acoustic signals are important for communication in many taxa, signal propagation is affected by environmental properties. Strong environmental constraints should drive call evolution, favoring signals with greater transmission distance and content integrity in a given calling habitat. Yet, few empirical studies have verified this prediction, possibly due to a shortcoming in habitat characterization, which is often too broad. Here we assess the potential impact of environmental constraints on the evolution of advertisement call in four groups of torrent-dwelling frogs in the family Ranidae. We reconstruct the evolution of calling site preferences, both broadly categorized and at a finer scale, onto a phylogenetic tree for 148 species with five markers (∼3600 bp). We test models of evolution for six call traits for 79 species with regard to the reconstructed history of calling site preferences and estimate their ancestral states. We find that in spite of existing morphological constraints, vocalizations of torrent-dwelling species are most probably constrained by the acoustic specificities of torrent habitats and particularly their high level of ambient noise. We also show that a fine-scale characterization of calling sites allows a better perception of the impact of environmental constraints on call evolution.
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Affiliation(s)
- Sandra Goutte
- Muséum National d'Histoire Naturelle, Institut de Systématique, Evolution, Biodiversité, ISYEB - UMR 7205 CNRS MNHN UPMC EPHE, Sorbonne Universités, 57 rue Cuvier, 75231, Paris Cedex 05, France. .,Laboratório de História Natural de Anfíbios Brasileiros, Instituto de Biologia, Universidade Estadual de Campinas, rua Monteiro Lobato, 255, CEP 13083-862, Campinas, São Paulo, Brazil.
| | - Alain Dubois
- Muséum National d'Histoire Naturelle, Institut de Systématique, Evolution, Biodiversité, ISYEB - UMR 7205 CNRS MNHN UPMC EPHE, Sorbonne Universités, 57 rue Cuvier, 75231, Paris Cedex 05, France
| | - Samuel D Howard
- Department of Biological Sciences, National University of Singapore, 14 Science Drive 4, 117543, Singapore
| | - Rafael Marquez
- Fonoteca Zoológica, Departamento de Biodiversidad y Biología Evolutiva, Museo Nacional de Ciencias Naturales (CSIC), C/José Gutiérrez Abascal, 2, 28006, Madrid, Spain
| | - Jodi J L Rowley
- Australian Museum Research Institute, Australian museum 1 College Street, Sydney, NSW, 2010, Australia
| | - J Maximilian Dehling
- Institut für Integrierte Naturwissenschaften, Abteilung Biologie, Universität Koblenz-Landau, Universitätsstraße 1, 56070, Koblenz, Germany
| | - Philippe Grandcolas
- Muséum National d'Histoire Naturelle, Institut de Systématique, Evolution, Biodiversité, ISYEB - UMR 7205 CNRS MNHN UPMC EPHE, Sorbonne Universités, 57 rue Cuvier, 75231, Paris Cedex 05, France
| | - Xiong Rongchuan
- Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, 610041, China
| | - Frédéric Legendre
- Muséum National d'Histoire Naturelle, Institut de Systématique, Evolution, Biodiversité, ISYEB - UMR 7205 CNRS MNHN UPMC EPHE, Sorbonne Universités, 57 rue Cuvier, 75231, Paris Cedex 05, France
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17
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Vinberg F, Kefalov V. Simultaneous ex vivo functional testing of two retinas by in vivo electroretinogram system. J Vis Exp 2015:e52855. [PMID: 25992809 DOI: 10.3791/52855] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/31/2022] Open
Abstract
An In vivo electroretinogram (ERG) signal is composed of several overlapping components originating from different retinal cell types, as well as noise from extra-retinal sources. Ex vivo ERG provides an efficient method to dissect the function of retinal cells directly from an intact isolated retina of animals or donor eyes. In addition, ex vivo ERG can be used to test the efficacy and safety of potential therapeutic agents on retina tissue from animals or humans. We show here how commercially available in vivo ERG systems can be used to conduct ex vivo ERG recordings from isolated mouse retinas. We combine the light stimulation, electronic and heating units of a standard in vivo system with custom-designed specimen holder, gravity-controlled perfusion system and electromagnetic noise shielding to record low-noise ex vivo ERG signals simultaneously from two retinas with the acquisition software included in commercial in vivo systems. Further, we demonstrate how to use this method in combination with pharmacological treatments that remove specific ERG components in order to dissect the function of certain retinal cell types.
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Affiliation(s)
- Frans Vinberg
- Department of Ophthalmology and Visual Sciences, Washington University in St. Louis;
| | - Vladimir Kefalov
- Department of Ophthalmology and Visual Sciences, Washington University in St. Louis
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18
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Why do green rods of frog and toad retinas look green? J Comp Physiol A Neuroethol Sens Neural Behav Physiol 2014; 200:823-35. [DOI: 10.1007/s00359-014-0925-z] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2014] [Revised: 06/18/2014] [Accepted: 06/20/2014] [Indexed: 10/25/2022]
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19
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Korenyak DA, Govardovskii VI. Photoreceptors and visual pigments in three species of newts. J EVOL BIOCHEM PHYS+ 2013. [DOI: 10.1134/s0022093013040038] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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20
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Flamarique IN, Cheng CL, Bergstrom C, Reimchen TE. Pronounced heritable variation and limited phenotypic plasticity in visual pigments and opsin expression of threespine stickleback photoreceptors. ACTA ACUST UNITED AC 2012; 216:656-67. [PMID: 23077162 DOI: 10.1242/jeb.078840] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
Vertebrate colour vision is mediated by the differential expression of visual pigment proteins (opsins) in retinal cone photoreceptors. Many species alter opsin expression during life, either as part of development or as a result of changes in habitat. The latter, a result of phenotypic plasticity, appears common among fishes, but its cellular origin and ecological significance are unknown. Here, we used adult threespine stickleback fish from different photic regimes to investigate heritable variability and phenotypic plasticity in opsin expression. Fish from clear waters had double cones that expressed long (LWS) and middle (RH2) wavelength opsins, one per double cone member. In contrast, fish from red light-shifted lakes had double cones that were >95% LWS/LWS pairs. All fish had single cones that predominantly expressed a short wavelength (SWS2) opsin but ultraviolet cones, expressing a SWS1 opsin, were present throughout the retina. Fish from red light-shifted lakes, when transferred to clear waters, had a ∼2% increase in RH2/LWS double cones, though double cone density remained constant. Comparison of visual pigment absorbance and light transmission in the environment indicated that the opsin complements of double cones maximized sensitivity to the background light, whereas single cones had visual pigments that were spectrally offset from the dominant background wavelengths. Our results indicate that phenotypic plasticity in opsin expression is minor in sticklebacks and of questionable functional significance.
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21
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Reuter T. Fifty years of dark adaptation 1961–2011. Vision Res 2011; 51:2243-62. [DOI: 10.1016/j.visres.2011.08.021] [Citation(s) in RCA: 59] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2010] [Revised: 08/24/2011] [Accepted: 08/24/2011] [Indexed: 02/07/2023]
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22
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23
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Heikkinen H, Nymark S, Donner K, Koskelainen A. Temperature dependence of dark-adapted sensitivity and light-adaptation in photoreceptors with A1 visual pigments: a comparison of frog L-cones and rods. Vision Res 2009; 49:1717-28. [PMID: 19348836 DOI: 10.1016/j.visres.2009.03.024] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2009] [Revised: 03/25/2009] [Accepted: 03/27/2009] [Indexed: 11/29/2022]
Abstract
Flash responses of L-cones and rods were recorded as ERG mass potentials in the frog retina at different temperatures (2-25 degrees C). The purpose was to elucidate factors that make cones faster and less sensitive than rods, particularly the possible role of thermal activation of L-cone visual pigment in maintaining a "light-adapted" state even in darkness. Up to ca. 15 degrees C, cones and rods were desensitized roughly equally by warming (Q(10) approximately 2.2-2.7), retaining a 5-fold sensitivity difference. In this range, the cone/rod difference must depend on factors other than thermal activation of the visual pigment. Above 15 degrees C, cones showed an additional component of desensitization compared with rods, coupled to accelerated response shut-off. This behavior is consistent with light-adaptation from temperature-dependent intrinsic activity (dark light). The apparent dark light as measured by the minimum background intensities needed to affect sensitivity and/or kinetics increased by ca. 10-fold between 15 and 25 degrees C, whereas reported increases in visual-pigment activation rates over this range are less than 5-fold. We conclude that the dark state of frog L-cones above 15 degrees C may be largely set by thermal activation of the phototransduction machinery, but only part of the experimentally determined dark light can be ascribed to the visual pigment.
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Affiliation(s)
- H Heikkinen
- Department of Biomedical Engineering and Computational Science, Helsinki University of Technology, FI-02015 HUT, Finland.
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24
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De Cock R. Larval and Adult Emission Spectra of Bioluminescence in Three European Firefly Species¶. Photochem Photobiol 2007. [DOI: 10.1111/j.1751-1097.2004.tb00018.x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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25
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26
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Ala-Laurila P, Albert RJ, Saarinen P, Koskelainen A, Donner K. The thermal contribution to photoactivation in A2 visual pigments studied by temperature effects on spectral properties. Vis Neurosci 2004; 20:411-9. [PMID: 14658769 DOI: 10.1017/s0952523803204065] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
Effects of temperature on the spectral properties of visual pigments were measured in the physiological range (5-28 degrees C) in photoreceptor cells of bullfrog (Rana catesbeiana) and crucian carp (Carassius carassius). Absorbance spectra recorded by microspectrophotometry (MSP) in single cells and sensitivity spectra recorded by electroretinography (ERG) across the isolated retina were combined to yield accurate composite spectra from ca. 400 nm to 800 nm. The four photoreceptor types selected for study allowed three comparisons illuminating the properties of pigments using the dehydroretinal (A2) chromophore: (1) the two members of an A1/A2 pigment pair with the same opsin (porphyropsin vs. rhodopsin in bullfrog "red" rods); (2) two A2 pigments with similar spectra (porphyropsin rods of bullfrog and crucian carp); and (3) two A2 pigments with different spectra (rods vs. long-wavelength-sensitive (L-) cones of crucian carp). Qualitatively, the temperature effects on A2 pigments were similar to those described previously for the A1 pigment of toad "red" rods. Warming caused an increase in relative sensitivities at very long wavelengths but additionally a small shift of lambdamax toward shorter wavelengths. The former effect was used for estimating the minimum energy required for photoactivation (Ea) of the pigment. Bullfrog rod opsin with A2 chromophore had Ea = 44.2 +/- 0.9 kcal/mol, significantly lower (one-tailed P < 0.05) than the value Ea = 46.5 +/- 0.8 kcal/mol for the same opsin coupled to A1. The A2 rod pigment of crucian carp had Ea = 42.3 +/- 0.6 kcal/mol, which is significantly higher (one-tailed P < 0.01) than that of the L-cones in the same retina (Ea = 38.3 +/- 0.4 kcal/mol), whereas the difference compared with the bullfrog A2 rod pigment is not statistically significant (two-tailed P = 0.13). No strict connection between lambdamax and Ea appears to exist among A2 pigments any more than among A1 pigments. Still, the A1 --> A2 chromophore substitution in bullfrog opsin causes three changes correlated as originally hypothesized by Barlow (1957): a red-shift of lambdamax, a decrease in Ea, and an increase in thermal noise.
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Affiliation(s)
- Petri Ala-Laurila
- Laboratory of Biomedical Engineering, Helsinki University of Technology, FIN-02015 HUT, Finland.
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27
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De Cock R. Larval and Adult Emission Spectra of Bioluminescence in Three European Firefly Species¶. Photochem Photobiol 2004; 79:339-42. [PMID: 15137510 DOI: 10.1562/2003-11-11-ra.1] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Abstract
We studied the spectral characteristics of the larvae of three sympatric Belgian species of fireflies, Lampyris noctiluca, Phosphaenus hemipterus and Lamprohiza splendidula. An in vivo spectral study was performed to compare bioluminescence spectra. The emission spectrum of a laboratory reared female L. noctiluca was recorded by a different, more exact method. The mean peak wavelength (lambdamax = 546 nm) and shapes of the unimodal emission spectra are visually similar for the larvae of all three species. The emission spectrum of the adult female L. noctiluca peaked in the same range as the larval bioluminescence between 546 and 551 nm. The bandwidth at half-maximum intensity was slightly greater for larval L. noctiluca (77 +/- 4 nm) compared with P. hemipterus (70 +/- 10 nm). The bandwidth of larval L. splendidula (77 +/- 8 nm) was not different compared with the other larvae, whereas the females' bandwidth was somewhat narrower (68 nm). The ecological significance of the color of bioluminescence and conservancy of green emission in larval fireflies and other luminescent beetle larvae is discussed.
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Affiliation(s)
- Raphaël De Cock
- Laboratory of Animal Ecology, Department of Biology, University of Antwerp, Antwerp, Belgium.
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28
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Kelber A, Vorobyev M, Osorio D. Animal colour vision--behavioural tests and physiological concepts. Biol Rev Camb Philos Soc 2003; 78:81-118. [PMID: 12620062 DOI: 10.1017/s1464793102005985] [Citation(s) in RCA: 528] [Impact Index Per Article: 25.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
Over a century ago workers such as J. Lubbock and K. von Frisch developed behavioural criteria for establishing that non-human animals see colour. Many animals in most phyla have since then been shown to have colour vision. Colour is used for specific behaviours, such as phototaxis and object recognition, while other behaviours such as motion detection are colour blind. Having established the existence of colour vision, research focussed on the question of how many spectral types of photoreceptors are involved. Recently, data on photoreceptor spectral sensitivities have been combined with behavioural experiments and physiological models to study systematically the next logical question: 'what neural interactions underlie colour vision?' This review gives an overview of the methods used to study animal colour vision, and discusses how quantitative modelling can suggest how photoreceptor signals are combined and compared to allow for the discrimination of biologically relevant stimuli.
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Affiliation(s)
- Almut Kelber
- Department of Cell and Organism Biology, Vision Group, Lund University, Helgonavägen 3, S-22362 Lund, Sweden.
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29
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Koskelainen A, Ala-Laurila P, Fyhrquist N, Donner K. Measurement of thermal contribution to photoreceptor sensitivity. Nature 2000; 403:220-3. [PMID: 10646610 DOI: 10.1038/35003242] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Activation of a visual pigment molecule to initiate phototransduction requires a minimum energy, Ea, that need not be wholly derived from a photon, but may be supplemented by heat. Theory predicts that absorbance at very long wavelengths declines with the fraction of molecules that have a sufficient complement of thermal energy, and that Ea is inversely related to the wavelength of maximum absorbance (lambda(max)) of the pigment. Consistent with the first of these predictions, warming increases relative visual sensitivity to long wavelengths. Here we measure this effect in amphibian photoreceptors with different pigments to estimate Ea (refs 2, 5-7) and test experimentally the predictions of an inverse relation between Ea and lambda(max). For rods and 'red' cones in the adult frog retina, we find no significant difference in Ea between the two pigments involved, although their lambda(max) values are very different. We also determined Ea for the rhodopsin in toad retinal rods--spectrally similar to frog rhodopsin but differing in amino-acid sequence--and found that it was significantly higher. In addition, we estimated Ea for two pigments whose lambda(max) difference was due only to a chromophore difference (A1 and A2 pigment, in adult and larval frog cones). Here Ea for A2 was lower than for A1. Our results refute the idea of a necessary relation between lambda(max) and Ea, but show that the A1 --> A2 chromophore substitution decreases Ea.
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Affiliation(s)
- A Koskelainen
- Laboratory of Biomedical Engineering, Helsinki University of Technology, Finland.
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30
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Cock RD, Matthysen E. Aposematism and Bioluminescence: Experimental evidence from Glow-worm Larvae(Coleoptera: Lampyridae). Evol Ecol 1999. [DOI: 10.1023/a:1011090017949] [Citation(s) in RCA: 60] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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31
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Fyhrquist N, Donner K, Hargrave PA, McDowell JH, Popp MP, Smith WC. Rhodopsins from three frog and toad species: sequences and functional comparisons. Exp Eye Res 1998; 66:295-305. [PMID: 9533857 DOI: 10.1006/exer.1997.0430] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
The frequency of thermal 'dark events' in the membrane current of rhodopsin rods of the bullfrog, Rana catesbeiana, is considerably lower than observed in rods of two toad species, even though all three rhodopsins have approximately the same absorbance characteristics. In order to map amino acid substitutions possibly associated with thermal stability in the genus Rana, the cDNA's coding for the rhodopsins of Bufo bufo, B. marinus and R. temporaria were sequenced and the conceptually translated protein sequences aligned to the previously sequenced rhodopsins of R. catesbeiana, R. pipiens and Xenopus laevis. Across the six anuran species studied, there are sixteen non-conserved substitutions and six changes that include gain or loss of a hydroxyl group. Serine or threonine at position 220 is unique to the three Rana species, phenylalanine at position 270 is unique to all three Ranas and to X. laevis, and phenylalanine at position 274 is unique to both species of the genus Bufo. This investigation produces a list of substitutions that are candidates for future studies of thermal stability. In addition, a number of amino acids are identified that apparently do not influence absorbance characteristics, at least not cumulatively.
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Affiliation(s)
- N Fyhrquist
- Department of Biosciences, University of Helsinki, Helsinki, Finland
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32
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Hisatomi O, Kayada S, Taniguchi Y, Kobayashi Y, Satoh T, Tokunaga F. Primary structure and characterization of a bullfrog visual pigment contained in small single cones. Comp Biochem Physiol B Biochem Mol Biol 1998; 119:585-91. [PMID: 9734342 DOI: 10.1016/s0305-0491(98)00032-7] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
A cDNA fragment encoding a putative visual pigment (FCV pigment) was isolated from the bullfrog, Rana catesbeiana. Its deduced amino acid sequence shows high similarities to those of short wavelength-sensitive pigments such as human blue-, chicken violet- and goldfish ultraviolet-sensitive pigments. An antiserum against its C-terminal amino acid sequence recognized the outer segments of small cone photoreceptor cells without oil droplets. It is suggested that the FCV pigment is a short wavelength-sensitive pigment contained in small single cones which have not been characterized previously.
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Affiliation(s)
- O Hisatomi
- Department of Earth and Space Science, Graduate School of Science, Osaka University, Japan
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33
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Donner K, Hemilä S, Koskelainen A. Light adaptation of cone photoresponses studied at the photoreceptor and ganglion cell levels in the frog retina. Vision Res 1998; 38:19-36. [PMID: 9474372 DOI: 10.1016/s0042-6989(97)00144-2] [Citation(s) in RCA: 23] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
The sensitivity and time scale of the dominant (562 nm) cone system of the frog, Rana temporaria, were studied as functions of steady adapting illuminance (IB). Photoreceptor responses to brief flashes of light were recorded as aspartate-isolated ERG mass potentials from the isolated retina. The characteristics of the cone signal after transmission through the retina were derived from response thresholds and stimulus--intensity-response--latency functions for extracellularly recorded spike discharges of single ganglion cells in the eyecup. At 14 degrees C, the single-photon response of dark-adapted cones, extrapolated from ERG intensity-response functions, had an amplitude of 0.5% of the saturated response (Umax) and peaked at tp approximately 0.4 sec. Steady background illumination decreased both tp and flash sensitivity (SF), starting from apparent "dark lights" of, respectively, less than 10 (for time scale) and about 100 (for sensitivity) photoisomerisations per cone per second [P*sec-1]. From there upwards, two distinct ranges of background adaptation were apparent. Under moderate backgrounds (up to IB approximately 10(4) - 10(5) P*sec-1), sensitivity fell according to the relation SF alpha IB-0.64 and time scale shortened according to tp alpha IB-0.16. Under brighter backgrounds, from approx. 10(5) P*sec-1 up to the limit of our light source at 10(7) P*sec-1, the decrease in SF was significantly stronger than predicted by the Weber relation (SF alpha IB-1), while the decrease in tp levelled out and even tended to reverse. All these changes were virtually identical at the photoreceptor and ganglion cell levels, although the absolute time scale of cone signals apparent at the latter level was 2-fold longer. Our general conclusion is that photoreceptors have several distinct regimes for light adaptation, and traditional descriptions of functional changes (in sensitivity and kinetics) relevant to vision need to be restated with higher resolution, in view also of recent insights into the diversity of underlying mechanisms.
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Affiliation(s)
- K Donner
- Department of Biosciences, University of Helsinki, Finland.
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34
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Abdulaeva G, Hargrave PA, Smith WC. The sequence of arrestins from rod and cone photoreceptors in the frogs Rana catesbeiana and Rana pipiens. Localization of gene transcripts by reverse-transcription polymerase chain reaction on isolated photoreceptors. EUROPEAN JOURNAL OF BIOCHEMISTRY 1995; 234:437-42. [PMID: 8536686 DOI: 10.1111/j.1432-1033.1995.437_b.x] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Abstract
Members of the arrestin protein family are known to participate in the inactivation of rhodopsin and other heptahelical receptors. Arrestins bind to the activated and phosphorylated state of these receptors, consequently blocking the ability of the receptors to activate the guanine-nucleotide-binding protein (G protein). We have determined the sequences of four retinal arrestins from two species of frog, Rana catesbeiana and Rana pipiens. Using polymerase chain reaction on reverse-transcribed mRNA isolated from single photoreceptor cells, we show that two of these arrestins are from rod photoreceptors and two rod photoreceptors and two are from cone photoreceptors. Comparison of these arrestins with the twenty known arrestin sequences identifies three regions of the protein that are well conserved across all phylogenetic groups. These regions may function in the binding of the arrestin to the heptahelical receptors. In addition, the Rana arrestins contain a uniquely acidic C-terminal sequence.
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Affiliation(s)
- G Abdulaeva
- Department of Ophthalmology, University of Florida, Gainesville, USA
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Donner K, Koskelainen A, Djupsund K, Hemilä S. Changes in retinal time scale under background light: observations on rods and ganglion cells in the frog retina. Vision Res 1995; 35:2255-66. [PMID: 7571462 DOI: 10.1016/0042-6989(94)00319-h] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
The kinetics of rod responses to flashes and steps of light was studied as a function of background intensity (IB) at the photoreceptor and ganglion cell levels in the frog retina. Responses of the rod photoreceptors were recorded intracellularly in the eyecup and as ERG mass potentials across the isolated, aspartate-superfused retina. The kinetics of the retinally transmitted signal was derived from the latencies of ganglion cell spike discharges recorded extracellularly in the eyecup. In all states of adaptation the linear-range rod response to dim flashes could be modelled as the impulse response of a chain of low-pass filters with the same number of stages: 4 (ERG) or 4-6 (intracellular). Dark-adapted time-to-peak (tp, mean +/- SD) at 12 degrees C was 2.4 +/- 0.6 sec (ERG) or 1.7 +/- 0.4 sec (intracellular). Under background light, the time scale shortened as a power function of background intensity, I-bB with b = 0.19 +/- 0.03 (ERG) or 0.14 +/- 0.04 (intracellular). The latency-derived time scale of the rod-driven signal at the ganglion cell agreed well with that of the photoreceptor responses. The apparent underlying impulse response had tp = 2.0 +/- 0.7 sec in darkness and accelerated as I-bB with b = 0.17 +/- 0.03. The photoreceptor-to-ganglion-cell transmission delay shortened by 30% between darkness and a background delivering ca 10(4) photoisomerizations per rod per second. Data from the literature suggest that all vertebrate photoreceptors may accelerate according to similar power functions of adapting intensity, with exponents in the range 0.1-0.2. It is noteworthy that the time scale of human (foveal) vision in experiments on flicker sensitivity and temporal summation shortens as a power function of mean luminance with b approximately 0.15.
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Affiliation(s)
- K Donner
- Department of Biosciences, University of Helsinki, Finland
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Popova E, Kupenova P, Vitanova L, Mitova L. ERG OFF response in frog retina: light adaptation and effect of 2-amino-4-phosphonobutyrate. ACTA PHYSIOLOGICA SCANDINAVICA 1995; 154:377-86. [PMID: 7572235 DOI: 10.1111/j.1748-1716.1995.tb09921.x] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
The intensity-response (V/log I) function of ERG OFF response (d-wave) in dark and light adapted superfused frog eyecups was investigated before and after blockade of the retinal ON channel by 2-amino-4-phosphonobutyrate (APB). The V/log I function of the dark adapted d-wave had two distinct components, each of them consisting of an ascendent and descendent part. In eyes adapted to mesopic or photopic background the V/log I function had only one component. It was shifted to the right along the intensity axis, had a steeper slope and a higher maximal response amplitude compared with the two components of the dark-adapted V/log I curve. Perfusion with 200 mumol APB markedly increased the d-wave amplitude at all stimulus intensities except for the threshold ones in both dark and light adapted eyes. The position of the V/log I curve was shifted slightly to the left along the intensity axis in dark adapted eyes, but was not changed in light adapted eyes. Thus the adaptational mechanism responsible for changes in the decremental sensitivity with increased background illumination was not altered by APB. The effect of APB was studied also in chromatically adapted eyes, in which the responses were predominantly mediated by one photoreceptor type. The results showed that the potentiating effect of APB on d-wave did not depend on photoreceptor input.
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Affiliation(s)
- E Popova
- Department of Physiology, High Medical Institute, Sofia, Bulgaria
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