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Hernández F, Palmieri L, Brunet J. Introgression and persistence of cultivar alleles in wild carrot (Daucus carota) populations in the United States. AMERICAN JOURNAL OF BOTANY 2023; 110:e16242. [PMID: 37681637 DOI: 10.1002/ajb2.16242] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/01/2023] [Revised: 09/06/2023] [Accepted: 09/06/2023] [Indexed: 09/09/2023]
Abstract
PREMISE Cultivated species and their wild relatives often hybridize in the wild, and the hybrids can survive and reproduce in some environments. However, it is unclear whether cultivar alleles are permanently incorporated into the wild genomes or whether they are purged by natural selection. This question is key to accurately assessing the risk of escape and spread of cultivar genes into wild populations. METHODS We used genomic data and population genomic methods to study hybridization and introgression between cultivated and wild carrot (Daucus carota) in the United States. We used single nucleotide polymorphisms (SNPs) obtained via genotyping by sequencing for 450 wild individuals from 29 wild georeferenced populations in seven states and 144 cultivars from the United States, Europe, and Asia. RESULTS Cultivated and wild carrot formed two genetically differentiated groups, and evidence of crop-wild admixture was detected in several but not all wild carrot populations in the United States. Two regions were identified where cultivar alleles were present in wild carrots: California and Nantucket Island (Massachusetts). Surprisingly, there was no evidence of introgression in some populations with a long-known history of sympatry with the crop, suggesting that post-hybridization barriers might prevent introgression in some areas. CONCLUSIONS Our results provide support for the introgression and long-term persistence of cultivar alleles in wild carrots populations. We thus anticipate that the release of genetically engineered (GE) cultivars would lead to the introduction and spread of GE alleles in wild carrot populations.
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Affiliation(s)
- Fernando Hernández
- Departamento de Agronomía, Universidad Nacional del Sur (UNS), San Andrés 800, 8000, Bahía Blanca, Argentina
- CERZOS, Universidad Nacional del Sur (UNS)-CONICET, Camino La Carrindanga Km 7, 8000, Bahía Blanca, Argentina
- Department of Botany and Biodiversity Research Centre, University of British Columbia, 2212 Main Mall, Vancouver, BC, V6T 1Z4, Canada
| | - Luciano Palmieri
- Agricultural Research Service Research Participation Program, Oak Ridge Institute for Science and Education (ORISE), Madison, WI, USA
| | - Johanne Brunet
- Vegetable Crops Research Unit, USDA-ARS, Madison, WI, USA
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2
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Shukla K, Laursen AE, Benavides J, Ejbari N, Campbell LG. Growth and fecundity of colonizing hybrid Raphanus populations are environmentally dependent. AMERICAN JOURNAL OF BOTANY 2021; 108:580-597. [PMID: 33855711 DOI: 10.1002/ajb2.1640] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/14/2020] [Accepted: 12/09/2020] [Indexed: 06/12/2023]
Abstract
PREMISE Hybrid gene pools harbor more genetic variation than progenitor populations. Thus, we expect hybrid populations to exhibit more dynamic evolutionary responses to environmental variation. We ask how environmental variation experienced by adapted and transplanted populations influence the success of late-generation hybrid populations during invasion. METHODS For four generations, 20 wild (Raphanus raphanistrum) and 20 hybrid radish (R. sativus × R. raphanistrum) plant populations evolved under experimentally manipulated moisture conditions (dry, wet, control-sheltered, or control-unsheltered plots; i.e., evolutionary environment) in old fields near Toronto, Canada. We planted advanced-generation wild and hybrid radishes in sheltered plots and exposed them to either an evolutionary or a novel watering environment. To determine how soil moisture would influence invasion success, we compared the phenotype and fecundity of plants grown in these various environments. RESULTS Hybridization produced larger plants. In wet environments, hybrid seedlings emerged more frequently and expressed higher photosynthetic activity. Low-moisture, novel conditions delayed and reduced seedling emergence frequency. Hybrid plants and those that evolved under relatively wet environments exhibited higher aboveground biomass. Hybrid plants from control-sheltered plots colonizing novel moisture environments were more fecund than comparable wild plants. CONCLUSIONS Dry environments are less likely than other evolutionary environments to contribute colonists. However, relatively wet locations support the evolution of relatively fecund plants, especially crop-wild hybrid populations. Thus, our results provide a strong mechanistic explanation for variation in the relative success of crop-wild hybrids among study locations and a new standard for studies that assess the risk of crop-wild hybridization events.
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Affiliation(s)
- Kruti Shukla
- Department of Chemistry and Biology, Ryerson University, Toronto, Ontario, M5B 2K3, Canada
| | - Andrew E Laursen
- Department of Chemistry and Biology, Ryerson University, Toronto, Ontario, M5B 2K3, Canada
| | - Jessica Benavides
- Department of Chemistry and Biology, Ryerson University, Toronto, Ontario, M5B 2K3, Canada
| | - Neda Ejbari
- Department of Chemistry and Biology, Ryerson University, Toronto, Ontario, M5B 2K3, Canada
| | - Lesley G Campbell
- Department of Chemistry and Biology, Ryerson University, Toronto, Ontario, M5B 2K3, Canada
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Gering E, Incorvaia D, Henriksen R, Conner J, Getty T, Wright D. Getting Back to Nature: Feralization in Animals and Plants. Trends Ecol Evol 2019; 34:1137-1151. [PMID: 31488326 PMCID: PMC7479514 DOI: 10.1016/j.tree.2019.07.018] [Citation(s) in RCA: 46] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2019] [Revised: 07/23/2019] [Accepted: 07/25/2019] [Indexed: 11/24/2022]
Abstract
Formerly domesticated organisms and artificially selected genes often escape controlled cultivation, but their subsequent evolution is not well studied. In this review, we examine plant and animal feralization through an evolutionary lens, including how natural selection, artificial selection, and gene flow shape feral genomes, traits, and fitness. Available evidence shows that feralization is not a mere reversal of domestication. Instead, it is shaped by the varied and complex histories of feral populations, and by novel selection pressures. To stimulate further insight we outline several future directions. These include testing how 'domestication genes' act in wild settings, studying the brains and behaviors of feral animals, and comparative analyses of feral populations and taxa. This work offers feasible and exciting research opportunities with both theoretical and practical applications.
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Affiliation(s)
- Eben Gering
- Department of Integrative Biology and Ecology, Evolutionary Biology, and Behavior Program, Michigan State University, East Lansing, MI, USA; Department of Biological Sciences, Halmos College of Natural Sciences and Oceanography, Nova Southeastern University, Davie, FL, USA.
| | - Darren Incorvaia
- Department of Integrative Biology and Ecology, Evolutionary Biology, and Behavior Program, Michigan State University, East Lansing, MI, USA
| | - Rie Henriksen
- IIFM Biology and AVIAN Behavioural Genomics and Physiology Group, Linköping University, Linköping, Sweden
| | - Jeffrey Conner
- Department of Integrative Biology and Ecology, Evolutionary Biology, and Behavior Program, Michigan State University, East Lansing, MI, USA; Kellogg Biological Station and Dept. of Plant Biology, Michigan State University, Hickory Corners, MI, USA
| | - Thomas Getty
- Department of Integrative Biology and Ecology, Evolutionary Biology, and Behavior Program, Michigan State University, East Lansing, MI, USA
| | - Dominic Wright
- IIFM Biology and AVIAN Behavioural Genomics and Physiology Group, Linköping University, Linköping, Sweden
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4
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Charbonneau A, Tack D, Lale A, Goldston J, Caple M, Conner E, Barazani O, Ziffer-Berger J, Dworkin I, Conner JK. Weed evolution: Genetic differentiation among wild, weedy, and crop radish. Evol Appl 2018; 11:1964-1974. [PMID: 30459841 PMCID: PMC6231464 DOI: 10.1111/eva.12699] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2017] [Revised: 07/21/2018] [Accepted: 08/06/2018] [Indexed: 11/30/2022] Open
Abstract
Approximately 200 weed species are responsible for more than 90% of crop losses and these comprise less than one percent of all named plant species, suggesting that there are only a few evolutionary routes that lead to weediness. Agricultural weeds can evolve along three main paths: they can be escaped crops, wild species, or crop‐wild hybrids. We tested these three hypotheses in weedy radish, a weed of small grains and an emerging model for investigating the evolution of agricultural weeds, using 21 CAPS and SSR markers scored on 338 individuals from 34 populations representing all major species and sub‐species in the radish genus Raphanus. To test for adaptation of the weeds to the agricultural environment, we estimated genetic differentiation in flowering time in a series of common garden experiments with over 2,400 individuals from 43 populations (all but one of the genotyped populations plus 10 additional populations). Our findings suggest that the agricultural weed radish R. r. raphanistrum is most genetically similar to native populations of R. r. raphanistrum and is likely not a feral crop or crop hybrid. We also show that weedy radish flowers more rapidly than any other Raphanus population or cultivar, which is consistent with rapid adaptation to the frequent and severe disturbance that characterizes agricultural fields.
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Affiliation(s)
| | - David Tack
- Department of Biology Pennsylvania State University University Park Pennsylvania
| | - Allison Lale
- Kellogg Biological Station and Department of Plant Biology Michigan State University Hickory Corners Michigan
| | - Josh Goldston
- Rosenstiel School of Marine and Atmospheric Science Miami Florida
| | - Mackenzie Caple
- Kellogg Biological Station and Department of Plant Biology Michigan State University Hickory Corners Michigan
| | - Emma Conner
- Kellogg Biological Station and Department of Plant Biology Michigan State University Hickory Corners Michigan
| | | | | | - Ian Dworkin
- Department of Biology McMaster University Hamilton Ontario Canada
| | - Jeffrey K Conner
- Kellogg Biological Station and Department of Plant Biology Michigan State University Hickory Corners Michigan
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Bigelow PJ, Loescher W, Hancock JF, Grumet R. Influence of intergenotypic competition on multigenerational persistence of abiotic stress resistance transgenes in populations of Arabidopsis thaliana. Evol Appl 2018; 11:950-962. [PMID: 29928302 PMCID: PMC5999209 DOI: 10.1111/eva.12610] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2017] [Accepted: 01/29/2018] [Indexed: 12/02/2022] Open
Abstract
Reducing crop losses due to abiotic stresses is a major target of agricultural biotechnology that will increase with climate change and global population growth. Concerns, however, have been raised about potential ecological impacts if transgenes become established in wild populations and cause increased competitiveness of weedy or invasive species. Potential risks will be a function of transgene movement, population sizes, and fitness effects on the recipient population. While key components influencing gene flow have been extensively investigated, there have been few studies on factors subsequent to transgene movement that can influence persistence and competitiveness. Here, we performed multiyear, multigenerational, assessment to examine fitness effects and persistence of three mechanistically different abiotic stress tolerance genes: C-repeat binding factor 3/drought responsive element binding factor 1a (CBF3/DREB1a); Salt overly sensitive 1 (SOS1); and Mannose-6-phosphate reductase (M6PR). Transgenic Arabidopsis thaliana overexpressing these genes were grown in pure populations and in competition with wild-type (WT) parents for six generations spanning a range of field environment conditions. Growth, development, biomass, seed production, and transgene frequency were measured at each generation. Seed planted for each generation was obtained from the previous generation as would occur during establishment of a new genotype in the environment. The three transgenes exhibited different fitness effects and followed different establishment trajectories. In comparison with pure populations, CBF3 lines exhibited reduced dry weight, seed yield, and viable seed yield, relative to WT background. In contrast, overexpression of SOS1 and M6PR did not significantly impact productivity measures in pure populations. In competition with WT, negative fitness effects were magnified. Transgene frequencies were significantly reduced for CBF3 and SOS1 while frequencies of M6PR appeared to be subject to genetic drift. These studies demonstrate the importance of fitness effects and intergenotype competition in influencing persistence of transgenes conferring complex traits.
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Affiliation(s)
- Patrick J. Bigelow
- Graduate Program in Plant Breeding, Genetics and BiotechnologyMichigan State UniversityEast LansingMIUSA
| | - Wayne Loescher
- Graduate Program in Plant Breeding, Genetics and BiotechnologyMichigan State UniversityEast LansingMIUSA
| | - James F. Hancock
- Graduate Program in Plant Breeding, Genetics and BiotechnologyMichigan State UniversityEast LansingMIUSA
| | - Rebecca Grumet
- Graduate Program in Plant Breeding, Genetics and BiotechnologyMichigan State UniversityEast LansingMIUSA
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Campbell LG, Teitel Z, Miriti MN. Contemporary evolution and the dynamics of invasion in crop-wild hybrids with heritable variation for two weedy life-histories. Evol Appl 2016; 9:697-708. [PMID: 27247620 PMCID: PMC4869411 DOI: 10.1111/eva.12366] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2015] [Accepted: 01/06/2016] [Indexed: 11/27/2022] Open
Abstract
Gene flow in crop-wild complexes between phenotypically differentiated ancestors may transfer adaptive genetic variation that alters the fecundity and, potentially, the population growth (λ) of weeds. We created biotypes with potentially invasive traits, early flowering or long leaves, in wild radish (Raphanus raphanistrum) and F5 crop-wild hybrid (R. sativus × R. raphanistrum) backgrounds and compared them to randomly mated populations, to provide the first experimental estimate of long-term fitness consequences of weedy life-history variation. Using a life table response experiment design, we modeled λ of experimental, field populations in Pellston, MI, and assessed the relative success of alternative weed strategies and the contributions of individual vital rates (germination, survival, seed production) to differences in λ among experimental populations. Growth rates (λ) were most influenced by seed production, a trait altered by hybridization and selection, compared to other vital rates. More seeds were produced by wild than hybrid populations and by long-leafed than early-flowering lineages. Although we did not detect a biotype by selection treatment effect on lambda, lineages also exhibited contrasting germination and survival strategies. Identifying life-history traits affecting population growth contributes to our understanding of which portions of the crop genome are most likely to introgress into weed populations.
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Affiliation(s)
- Lesley G Campbell
- Department of Chemistry & Biology Ryerson University Toronto ON Canada
| | - Zachary Teitel
- Department of Chemistry & Biology Ryerson University Toronto ON Canada; Present address: Department of Integrative Biology University of Guelph Guelph ON Canada
| | - Maria N Miriti
- Department of Evolution, Ecology and Organismal Biology The Ohio State University Columbus OH USA
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7
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Thrall PH, Oakeshott JG, Fitt G, Southerton S, Burdon JJ, Sheppard A, Russell RJ, Zalucki M, Heino M, Ford Denison R. Evolution in agriculture: the application of evolutionary approaches to the management of biotic interactions in agro-ecosystems. Evol Appl 2015; 4:200-15. [PMID: 25567968 PMCID: PMC3352559 DOI: 10.1111/j.1752-4571.2010.00179.x] [Citation(s) in RCA: 102] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2010] [Accepted: 11/30/2010] [Indexed: 01/04/2023] Open
Abstract
Anthropogenic impacts increasingly drive ecological and evolutionary processes at many spatio-temporal scales, demanding greater capacity to predict and manage their consequences. This is particularly true for agro-ecosystems, which not only comprise a significant proportion of land use, but which also involve conflicting imperatives to expand or intensify production while simultaneously reducing environmental impacts. These imperatives reinforce the likelihood of further major changes in agriculture over the next 30–40 years. Key transformations include genetic technologies as well as changes in land use. The use of evolutionary principles is not new in agriculture (e.g. crop breeding, domestication of animals, management of selection for pest resistance), but given land-use trends and other transformative processes in production landscapes, ecological and evolutionary research in agro-ecosystems must consider such issues in a broader systems context. Here, we focus on biotic interactions involving pests and pathogens as exemplars of situations where integration of agronomic, ecological and evolutionary perspectives has practical value. Although their presence in agro-ecosystems may be new, many traits involved in these associations evolved in natural settings. We advocate the use of predictive frameworks based on evolutionary models as pre-emptive management tools and identify some specific research opportunities to facilitate this. We conclude with a brief discussion of multidisciplinary approaches in applied evolutionary problems.
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Affiliation(s)
| | | | - Gary Fitt
- CSIRO Ecosystem Sciences Indooroopilly, Qld, Australia
| | | | | | | | | | - Myron Zalucki
- The University of Queensland, School of Integrative Biology Qld, Australia
| | - Mikko Heino
- Department of Biology, University of Bergen Bergen, Norway
| | - R Ford Denison
- University of Minnesota, Ecology, Evolution, and Behavior St. Paul, MN, USA
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8
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Hooftman DAP, Bullock JM, Morley K, Lamb C, Hodgson DJ, Bell P, Thomas J, Hails RS. Seed bank dynamics govern persistence of Brassica hybrids in crop and natural habitats. ANNALS OF BOTANY 2015; 115:147-157. [PMID: 25452253 PMCID: PMC4284111 DOI: 10.1093/aob/mcu213] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/14/2014] [Revised: 08/26/2014] [Accepted: 09/16/2014] [Indexed: 06/04/2023]
Abstract
BACKGROUND AND AIMS Gene flow from crops to their wild relatives has the potential to alter population growth rates and demography of hybrid populations, especially when a new crop has been genetically modified (GM). This study introduces a comprehensive approach to assess this potential for altered population fitness, and uses a combination of demographic data in two habitat types and mathematical (matrix) models that include crop rotations and outcrossing between parental species. METHODS Full life-cycle demographic rates, including seed bank survival, of non-GM Brassica rapa × B. napus F1 hybrids and their parent species were estimated from experiments in both agricultural and semi-natural habitats. Altered fitness potential was modelled using periodic matrices including crop rotations and outcrossing between parent species. KEY RESULTS The demographic vital rates (i.e. for major stage transitions) of the hybrid population were intermediate between or lower than both parental species. The population growth rate (λ) of hybrids indicated decreases in both habitat types, and in a semi-natural habitat hybrids became extinct at two sites. Elasticity analyses indicated that seed bank survival was the greatest contributor to λ. In agricultural habitats, hybrid populations were projected to decline, but with persistence times up to 20 years. The seed bank survival rate was the main driver determining persistence. It was found that λ of the hybrids was largely determined by parental seed bank survival and subsequent replenishment of the hybrid population through outcrossing of B. rapa with B. napus. CONCLUSIONS Hybrid persistence was found to be highly dependent on the seed bank, suggesting that targeting hybrid seed survival could be an important management option in controlling hybrid persistence. For local risk mitigation, an increased focus on the wild parent is suggested. Management actions, such as control of B. rapa, could indirectly reduce hybrid populations by blocking hybrid replenishment.
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Affiliation(s)
- Danny A P Hooftman
- Centre for Ecology and Hydrology, Benson Lane, Wallingford OX10 8BB, UK, School of Biosciences, University of Exeter, Cornwall Campus, Penryn TR10 9EZ, UK and National Institute of Agricultural Botany, Huntingdon Rd, Cambridge CB3 0EL, UK
| | - James M Bullock
- Centre for Ecology and Hydrology, Benson Lane, Wallingford OX10 8BB, UK, School of Biosciences, University of Exeter, Cornwall Campus, Penryn TR10 9EZ, UK and National Institute of Agricultural Botany, Huntingdon Rd, Cambridge CB3 0EL, UK
| | - Kathryn Morley
- Centre for Ecology and Hydrology, Benson Lane, Wallingford OX10 8BB, UK, School of Biosciences, University of Exeter, Cornwall Campus, Penryn TR10 9EZ, UK and National Institute of Agricultural Botany, Huntingdon Rd, Cambridge CB3 0EL, UK
| | - Caroline Lamb
- Centre for Ecology and Hydrology, Benson Lane, Wallingford OX10 8BB, UK, School of Biosciences, University of Exeter, Cornwall Campus, Penryn TR10 9EZ, UK and National Institute of Agricultural Botany, Huntingdon Rd, Cambridge CB3 0EL, UK
| | - David J Hodgson
- Centre for Ecology and Hydrology, Benson Lane, Wallingford OX10 8BB, UK, School of Biosciences, University of Exeter, Cornwall Campus, Penryn TR10 9EZ, UK and National Institute of Agricultural Botany, Huntingdon Rd, Cambridge CB3 0EL, UK
| | - Philippa Bell
- Centre for Ecology and Hydrology, Benson Lane, Wallingford OX10 8BB, UK, School of Biosciences, University of Exeter, Cornwall Campus, Penryn TR10 9EZ, UK and National Institute of Agricultural Botany, Huntingdon Rd, Cambridge CB3 0EL, UK
| | - Jane Thomas
- Centre for Ecology and Hydrology, Benson Lane, Wallingford OX10 8BB, UK, School of Biosciences, University of Exeter, Cornwall Campus, Penryn TR10 9EZ, UK and National Institute of Agricultural Botany, Huntingdon Rd, Cambridge CB3 0EL, UK
| | - Rosemary S Hails
- Centre for Ecology and Hydrology, Benson Lane, Wallingford OX10 8BB, UK, School of Biosciences, University of Exeter, Cornwall Campus, Penryn TR10 9EZ, UK and National Institute of Agricultural Botany, Huntingdon Rd, Cambridge CB3 0EL, UK
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9
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Hartman Y, Hooftman DAP, Uwimana B, Schranz ME, van de Wiel CCM, Smulders MJM, Visser RGF, Michelmore RW, van Tienderen PH. Abiotic stress QTL in lettuce crop-wild hybrids: comparing greenhouse and field experiments. Ecol Evol 2014; 4:2395-409. [PMID: 25360276 PMCID: PMC4203288 DOI: 10.1002/ece3.1060] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2013] [Revised: 03/03/2014] [Accepted: 03/11/2014] [Indexed: 11/11/2022] Open
Abstract
The development of stress-tolerant crops is an increasingly important goal of current crop breeding. A higher abiotic stress tolerance could increase the probability of introgression of genes from crops to wild relatives. This is particularly relevant to the discussion on the risks of new GM crops that may be engineered to increase abiotic stress resistance. We investigated abiotic stress QTL in greenhouse and field experiments in which we subjected recombinant inbred lines from a cross between cultivated Lactuca sativa cv. Salinas and its wild relative L. serriola to drought, low nutrients, salt stress, and aboveground competition. Aboveground biomass at the end of the rosette stage was used as a proxy for the performance of plants under a particular stress. We detected a mosaic of abiotic stress QTL over the entire genome with little overlap between QTL from different stresses. The two QTL clusters that were identified reflected general growth rather than specific stress responses and colocated with clusters found in earlier studies for leaf shape and flowering time. Genetic correlations across treatments were often higher among different stress treatments within the same experiment (greenhouse or field), than among the same type of stress applied in different experiments. Moreover, the effects of the field stress treatments were more correlated with those of the greenhouse competition treatments than to those of the other greenhouse stress experiments, suggesting that competition rather than abiotic stress is a major factor in the field. In conclusion, the introgression risk of stress tolerance (trans-)genes under field conditions cannot easily be predicted based on genomic background selection patterns from controlled QTL experiments in greenhouses, especially field data will be needed to assess potential (negative) ecological effects of introgression of these transgenes into wild relatives.
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Affiliation(s)
- Yorike Hartman
- Institute for Biodiversity and Ecosystem Dynamics, Universiteit van Amsterdam Amsterdam, The Netherlands
| | - Danny A P Hooftman
- Institute for Biodiversity and Ecosystem Dynamics, Universiteit van Amsterdam Amsterdam, The Netherlands ; NERC, Centre for Ecology and Hydrology Wallingford, UK
| | - Brigitte Uwimana
- Wageningen UR Plant Breeding, Wageningen University and Research Centre Wageningen, The Netherlands
| | - M Eric Schranz
- Institute for Biodiversity and Ecosystem Dynamics, Universiteit van Amsterdam Amsterdam, The Netherlands
| | - Clemens C M van de Wiel
- Wageningen UR Plant Breeding, Wageningen University and Research Centre Wageningen, The Netherlands
| | - Marinus J M Smulders
- Wageningen UR Plant Breeding, Wageningen University and Research Centre Wageningen, The Netherlands
| | - Richard G F Visser
- Wageningen UR Plant Breeding, Wageningen University and Research Centre Wageningen, The Netherlands
| | - Richard W Michelmore
- Genome Center and Department of Plant Sciences, University of California Davis, California
| | - Peter H van Tienderen
- Institute for Biodiversity and Ecosystem Dynamics, Universiteit van Amsterdam Amsterdam, The Netherlands
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10
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Anton KA, Ward JR, Cruzan MB. Pollinator-mediated selection on floral morphology: evidence for transgressive evolution in a derived hybrid lineage. J Evol Biol 2013; 26:660-73. [PMID: 23331370 DOI: 10.1111/jeb.12083] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2012] [Revised: 11/10/2012] [Accepted: 11/23/2012] [Indexed: 11/28/2022]
Abstract
Hybridization between closely related lineages is a mechanism that might promote substantive changes in phenotypic traits of descendants, resulting in transgressive evolution. Interbreeding between divergent but morphologically similar lineages can produce exceptional phenotypes, but the potential for transgressive variation to facilitate long-term trait changes in derived hybrid lineages has received little attention. We compare pollinator-mediated selection on transgressive floral traits in both early-generation and derived hybrid lineages of the Piriqueta cistoides ssp. caroliniana complex. The bowl-shaped flowers of morphotypes in this complex have similar gross morphologies and attract a common suite of small insect pollinators. However, they are defined by significant differences in characters that generate pollinator interest and visitation, including floral area and petal separation. In common garden experiments, patterns of pollen deposition in early-generation recombinant hybrids indicate that Piriqueta's pollinators favour flowers with greater area and reduced petal separation. Changes in floral morphology in derived hybrid lineages are consistent with predictions from selection gradients, but the magnitude of change is limited relative to the range of transgressive variation. These results suggest that hybridization provides variation for evolution of divergent floral traits. However, the potential for extreme transgressive variants to contribute to phenotypic shifts may be limited due to reduced heritability, evolutionary constraints or fitness trade-offs.
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Affiliation(s)
- K A Anton
- Department of Biology, Portland State University, Portland, OR, USA
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11
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Hartman Y, Hooftman DAP, Uwimana B, van de Wiel CCM, Smulders MJM, Visser RGF, van Tienderen PH. Genomic regions in crop-wild hybrids of lettuce are affected differently in different environments: implications for crop breeding. Evol Appl 2012; 5:629-40. [PMID: 23028403 PMCID: PMC3461145 DOI: 10.1111/j.1752-4571.2012.00240.x] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2011] [Accepted: 12/21/2011] [Indexed: 11/30/2022] Open
Abstract
Many crops contain domestication genes that are generally considered to lower fitness of crop-wild hybrids in the wild environment. Transgenes placed in close linkage with such genes would be less likely to spread into a wild population. Therefore, for environmental risk assessment of GM crops, it is important to know whether genomic regions with such genes exist, and how they affect fitness. We performed quantitative trait loci (QTL) analyses on fitness(-related) traits in two different field environments employing recombinant inbred lines from a cross between cultivated Lactuca sativa and its wild relative Lactuca serriola. We identified a region on linkage group 5 where the crop allele consistently conferred a selective advantage (increasing fitness to 212% and 214%), whereas on linkage group 7, a region conferred a selective disadvantage (reducing fitness to 26% and 5%), mainly through delaying flowering. The probability for a putative transgene spreading would therefore depend strongly on the insertion location. Comparison of these field results with greenhouse data from a previous study using the same lines showed considerable differences in QTL patterns. This indicates that care should be taken when extrapolating experiments from the greenhouse, and that the impact of domestication genes has to be assessed under field conditions.
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Affiliation(s)
- Yorike Hartman
- Institute for Biodiversity and Ecosystem Dynamics, Universiteit van Amsterdam Amsterdam, The Netherlands
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12
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Hovick SM, Campbell LG, Snow AA, Whitney KD. Hybridization alters early life-history traits and increases plant colonization success in a novel region. Am Nat 2011; 179:192-203. [PMID: 22218309 DOI: 10.1086/663684] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
Hybridization is hypothesized to promote invasiveness, but empirical tests comparing the performance of hybrid taxa versus parental taxa in novel regions are lacking. We experimentally compared colonization ability of populations of wild radish (Raphanus raphanistrum) with populations of advanced-generation hybrids between wild radish and cultivated radish (Raphanus sativus) in a southeast Texas pasture, well beyond the known invasive range of hybrid radish. We also manipulated the strength of interspecific competition to better generalize across variable environments. In both competitive environments, hybrid populations produced at least three times more seeds than did wild radish populations, a distinction that was driven by greater hybrid seedling emergence, earlier hybrid emergence, and more hybrid seedlings surviving to flower, rather than by greater individual fecundity. Flowering duration in hybrids was less negatively affected by competition than it was in wild radish, while early emergence was associated with subsequent high seed output in both biotypes. Our data show that hybridization can enhance colonization success in a novel region and, by comparison with previous studies, that the life-history traits enhancing hybrid success can differ across regions, even for lineages originating from the same hybridization event. These results imply a much larger arena for hybrid success than previously appreciated.
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Affiliation(s)
- Stephen M Hovick
- Department of Ecology and Evolutionary Biology, Rice University, Houston, Texas 77005, USA.
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13
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Gutierrez A, Cantamutto M, Poverene M. Persistence of sunflower crop traits and fitness in Helianthus petiolaris populations. PLANT BIOLOGY (STUTTGART, GERMANY) 2011; 13:821-30. [PMID: 21815987 DOI: 10.1111/j.1438-8677.2010.00433.x] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
Abstract
Transgenic plants have increased interest in the study of crop gene introgression in wild populations. Genes (or transgenes) conferring adaptive advantages persist in introgressed populations, enhancing competitiveness of wild or weedy plants. This represents an ecological risk that could increase problems of weed control. Introgression of cultivar alleles into wild plant populations via crop-wild hybridisations is primarily governed by their fitness effect. To evaluate this, we studied the second generation of seven wild-crop interspecific hybrids between weedy Helianthus petiolaris and cultivated sunflower, H. annuus var. macrocarpus. The second generation comprised open-pollinated progeny and backcrosses to the wild parent, mimicking crosses that occur in natural situations. We compared a number of morphological, life history and fitness traits. Multivariate analysis showed that the parental species H. annuus and H. petiolaris differed in a number of morphological traits, while the second hybrid generation between them was intermediate. Sunflower crop introgression lowered fitness of interspecific hybrids, but fitness parameters tended to recover in the following generation. Relative frequency of wild/weedy and introgressed plants was estimated through four generations, based on male and female parent fitness. In spite of several negative selection coefficients observed in the second generation, introgressed plants could be detected in stands of <100 weedy H. petiolaris populations. The rapid recovery of fecundity parameters leads to prediction that any trait conferring an ecological advantage will diffuse into the wild or weedy population, even if F1 hybrids have low fitness.
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Affiliation(s)
- A Gutierrez
- Centro De Recursos Naturales de la Zona Semiárida (CERZOS-CONICET), Bahía Blanca, Argentina.
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14
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Hooftman DAP, Flavell AJ, Jansen H, den Nijs HCM, Syed NH, Sørensen AP, Orozco-Ter Wengel P, van de Wiel CCM. Locus-dependent selection in crop-wild hybrids of lettuce under field conditions and its implication for GM crop development. Evol Appl 2011; 4:648-59. [PMID: 25568012 PMCID: PMC3352534 DOI: 10.1111/j.1752-4571.2011.00188.x] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2010] [Accepted: 03/28/2011] [Indexed: 12/01/2022] Open
Abstract
Gene escape from crops has gained much attention in the last two decades, as transgenes introgressing into wild populations could affect the latter's ecological characteristics. However, different genes have different likelihoods of introgression. The mixture of selective forces provided by natural conditions creates an adaptive mosaic of alleles from both parental species. We investigated segregation patterns after hybridization between lettuce (Lactuca sativa) and its wild relative, L. serriola. Three generations of hybrids (S1, BC1, and BC1S1) were grown in habitats mimicking the wild parent's habitat. As control, we harvested S1 seedlings grown under controlled conditions, providing very limited possibility for selection. We used 89 AFLP loci, as well as more recently developed dominant markers, 115 retrotransposon markers (SSAP), and 28 NBS loci linked to resistance genes. For many loci, allele frequencies were biased in plants exposed to natural field conditions, including over-representation of crop alleles for various loci. Furthermore, Linkage disequilibrium was locally changed, allegedly by selection caused by the natural field conditions, providing ample opportunity for genetic hitchhiking. Our study indicates that when developing genetically modified crops, a judicious selection of insertion sites, based on knowledge of selective (dis)advantages of the surrounding crop genome under field conditions, could diminish transgene persistence.
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Affiliation(s)
- Danny A P Hooftman
- Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam Amsterdam, The Netherlands ; Centre for Ecology and Hydrology Wallingford, UK
| | | | - Hans Jansen
- Biometris Wageningen UR, Wageningen, The Netherlands
| | - Hans C M den Nijs
- Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam Amsterdam, The Netherlands
| | | | | | - Pablo Orozco-Ter Wengel
- Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam Amsterdam, The Netherlands ; Keygene N.V Wageningen, The Netherlands
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15
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Kwit C, Moon HS, Warwick SI, Stewart CN. Transgene introgression in crop relatives: molecular evidence and mitigation strategies. Trends Biotechnol 2011; 29:284-93. [PMID: 21388698 DOI: 10.1016/j.tibtech.2011.02.003] [Citation(s) in RCA: 51] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2010] [Revised: 01/31/2011] [Accepted: 02/04/2011] [Indexed: 10/18/2022]
Abstract
Incorporation of crop genes into wild and weedy relative populations (i.e. introgression) has long been of interest to ecologists and weed scientists. Potential negative outcomes that result from crop transgene introgression (e.g. extinction of native wild relative populations; invasive spread by wild or weedy hosts) have not been documented, and few examples of transgene introgression exist. However, molecular evidence of introgression from non-transgenic crops to their relatives continues to emerge, even for crops deemed low-risk candidates for transgene introgression. We posit that transgene introgression monitoring and mitigation strategies are warranted in cases in which transgenes are predicted to confer selective advantages and disadvantages to recipient hosts. The utility and consequences of such strategies are examined, and future directions provided.
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Affiliation(s)
- Charles Kwit
- Department of Plant Sciences, University of Tennessee, Knoxville, TN 37996, USA.
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16
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O'Neill CJ, Swain DL, Kadarmideen HN. Evolutionary process of Bos taurus cattle in favourable versus unfavourable environments and its implications for genetic selection. Evol Appl 2010; 3:422-33. [PMID: 25567936 PMCID: PMC3352504 DOI: 10.1111/j.1752-4571.2010.00151.x] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2010] [Accepted: 07/01/2010] [Indexed: 11/28/2022] Open
Abstract
The evolutionary processes that have enabled Bos taurus cattle to establish around the globe are at the core to the future success of livestock production. Our study focuses on the history of cattle domestication including the last 60 years of B. taurus breeding programmes in both favourable and unfavourable environments and its consequences on evolution and fitness of cattle. We discuss the emergence of 'production diseases' in temperate production systems and consider the evolutionary genetics of tropical adaptation in cattle and conclude that the Senepol, N'Dama, Adaptaur and Criollo breeds, among others with similar evolutionary trajectories, would possess genes capable of improving the productivity of cattle in challenging environments. Using our own experimental evidence from northern Australia, we review the evolution of the Adaptaur cattle breed which has become resistant to cattle tick. We emphasize that the knowledge of interactions between genotype, environment and management in the livestock systems will be required to generate genotypes for efficient livestock production that are both economically and environmentally sustainable. Livestock producers in the 21st century will have less reliance on infrastructure and veterinary products to alleviate environmental stress and more on the animal's ability to achieve fitness in a given production environment.
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Affiliation(s)
- Christopher J O'Neill
- Systems Genetics, CSIRO Livestock Industries; and Sustainable Agricultural Flagship Davies Laboratory, Townsville, Qld, Australia
| | - David L Swain
- Centre for Environmental Management, CQUniversity Rockhampton, Qld, Australia
| | - Haja N Kadarmideen
- Systems Genetics, CSIRO Livestock Industries; and Sustainable Agricultural Flagship Davies Laboratory, Townsville, Qld, Australia
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17
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Snow AA, Culley TM, Campbell LG, Sweeney PM, Hegde SG, Ellstrand NC. Long-term persistence of crop alleles in weedy populations of wild radish (Raphanus raphanistrum). THE NEW PHYTOLOGIST 2010; 186:537-548. [PMID: 20122132 DOI: 10.1111/j.1469-8137.2009.03172.x] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
*Hybridization allows transgenes and other crop alleles to spread to wild/weedy populations of related taxa. Researchers have debated whether such alleles will persist because low hybrid fitness and linkage to domestication traits could severely impede introgression. *To examine variation in the fates of three unlinked crop alleles, we monitored four experimental, self-seeding, hybrid populations of Raphanus raphanistrum x Raphanus sativus (radish) in Michigan, USA, over a decade. We also compared the fecundity of advanced-generation hybrid plants with wild plants in a common garden experiment. *Initially, F(1) hybrids had reduced fitness, but the populations quickly evolved wild-type pollen fertility. In Year 10, the fecundity of plants from the experimental populations was similar to that of wild genotypes. Crop-specific alleles at the three loci persisted for 10 yr in all populations, and their frequencies varied among loci, populations and years. *This research provides a unique case study of substantial variation in the rates and patterns of crop allele introgression after a single hybridization event. Our findings demonstrate that certain crop alleles can introgress easily while others remain rare, supporting the assumption that neutral or beneficial transgenes that are not linked to maladaptive traits can persist in the wild.
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Affiliation(s)
- A A Snow
- Department of Evolution, Ecology, and Organismal Biology, Ohio State University, Columbus, OH 43210, USA.
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18
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Tseng M, Bernatchez L. Editorial: 2009 in review. Evol Appl 2010; 3:93-5. [PMID: 25567909 PMCID: PMC3352473 DOI: 10.1111/j.1752-4571.2010.00122.x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022] Open
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19
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Arnaud JF, Fénart S, Cordellier M, Cuguen J. Populations of weedy crop-wild hybrid beets show contrasting variation in mating system and population genetic structure. Evol Appl 2010; 3:305-18. [PMID: 25567926 PMCID: PMC3352460 DOI: 10.1111/j.1752-4571.2010.00121.x] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2009] [Accepted: 01/06/2010] [Indexed: 11/28/2022] Open
Abstract
Reproductive traits are key parameters for the evolution of invasiveness in weedy crop–wild hybrids. In Beta vulgaris, cultivated beets hybridize with their wild relatives in the seed production areas, giving rise to crop–wild hybrid weed beets. We investigated the genetic structure, the variation in first-year flowering and the variation in mating system among weed beet populations occurring within sugar beet production fields. No spatial genetic structure was found for first-year populations composed of F1 crop–wild hybrid beets. In contrast, populations composed of backcrossed weed beets emerging from the seed bank showed a strong isolation-by-distance pattern. Whereas gametophytic self-incompatibility prevents selfing in wild beet populations, all studied weed beet populations had a mixed-mating system, plausibly because of the introgression of the crop-derived Sf gene that disrupts self-incompatibility. No significant relationship between outcrossing rate and local weed beet density was found, suggesting no trends for a shift in the mating system because of environmental effects. We further reveal that increased invasiveness of weed beets may stem from positive selection on first-year flowering induction depending on the B gene inherited from the wild. Finally, we discuss the practical and applied consequences of our findings for crop-weed management.
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Affiliation(s)
- Jean-François Arnaud
- Laboratoire de Génétique et Évolution des Populations Végétales, UMR CNRS 8016, Bâtiment SN2, Université des Sciences et Technologies de Lille - Lille 1 Villeneuve d'Ascq Cedex, France
| | - Stéphane Fénart
- Laboratoire de Génétique et Évolution des Populations Végétales, UMR CNRS 8016, Bâtiment SN2, Université des Sciences et Technologies de Lille - Lille 1 Villeneuve d'Ascq Cedex, France
| | - Mathilde Cordellier
- Laboratoire de Génétique et Évolution des Populations Végétales, UMR CNRS 8016, Bâtiment SN2, Université des Sciences et Technologies de Lille - Lille 1 Villeneuve d'Ascq Cedex, France
| | - Joël Cuguen
- Laboratoire de Génétique et Évolution des Populations Végétales, UMR CNRS 8016, Bâtiment SN2, Université des Sciences et Technologies de Lille - Lille 1 Villeneuve d'Ascq Cedex, France
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Hooftman DAP, Hartman Y, Oostermeijer JGB, Den Nijs HJCM. Existence of vigorous lineages of crop-wild hybrids in Lettuce under field conditions. ENVIRONMENTAL BIOSAFETY RESEARCH 2009; 8:203-17. [PMID: 20883659 DOI: 10.1051/ebr/2010001] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/13/2010] [Accepted: 06/20/2010] [Indexed: 01/27/2023]
Abstract
Plant to plant gene flow is a route of environmental exposure for GM plants specifically since crosses with wild relatives could lead to the formation of more vigorous hybrids, which could increase the rate of introgression and the environmental impact. Here, we test the first step in the process of potential transgene introgression: whether hybrid vigor can be inherited to the next generation, which could lead to fixation of altered, i.e., elevated, quantitative traits. The potential for a permanent elevated fitness was tested using individual autogamous progeny lineages of hybrids between the crop Lactuca sativa (Lettuce) and the wild species Lactuca serriola (Prickly Lettuce). We compared progeny from motherplants grown under either greenhouse or field conditions. The survival of young plants depended strongly on maternal environment. Furthermore, we observed that offspring reproductive fitness components were correlated with maternal fitness. Our study demonstrates that post-zygotic genotypic sorting at the young plants stage reduces the number of genotypes non-randomly, leading to inheritance of high levels of reproductive traits in the surviving hybrid lineages, compared to the pure wild relatives. Consequently, directional selection could lead to displacement of the pure wild relative and fixation of more vigorous genome segments originating from crops, stabilizing plant traits at elevated levels. Such information can be used to indentify segments which are less likely to introgress into wild relative populations as a target for transgene insertion.
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Affiliation(s)
- Danny A P Hooftman
- Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, The Netherlands.
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Ridley CE, Ellstrand NC. Rapid evolution of morphology and adaptive life history in the invasive California wild radish (Raphanus sativus) and the implications for management. Evol Appl 2009; 3:64-76. [PMID: 25567904 PMCID: PMC3352453 DOI: 10.1111/j.1752-4571.2009.00099.x] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2009] [Accepted: 08/08/2009] [Indexed: 11/26/2022] Open
Abstract
Understanding the evolution and demography of invasive populations may be key for successful management. In this study, we test whether or not populations of the non-native, hybrid-derived California wild radish have regionally adapted to divergent climates over their 150-year history in California and determine if population demographic dynamics might warrant different region-specific strategies for control. Using a reciprocal transplant approach, we found evidence for genetically based differences both between and among northern, coastal and southern, inland populations of wild radish. Individual fitness was analyzed using a relatively new statistical method called ‘aster modeling’ which integrates temporally sequential fitness measurements. In their respective home environments, fitness differences strongly favored southern populations and only slightly favored northern populations. Demographic rates of transition and sensitivities also differed between regions of origin, suggesting that the most effective approach for reducing overall population growth rate would be to target different life-history stages in each region.
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Affiliation(s)
- Caroline E Ridley
- Department of Botany and Plant Sciences, University of California Riverside Riverside, CA, USA
| | - Norman C Ellstrand
- Department of Botany and Plant Sciences, University of California Riverside Riverside, CA, USA
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