An updated description of the A ustralian dingo ( C anis dingo M eyer, 1793)

Genomic Consequences of Isolation and Inbreeding in an Island Dingo Population

Dingoes come from an ancient canid lineage that originated in East Asia around 8,000 to 11,000 years BP. As Australia's largest terrestrial predator, dingoes play an important ecological role. A small, protected population exists on a world heritage listed offshore island, K'gari (formerly Fraser Island). Concern regarding the persistence of dingoes on K'gari has risen due to their low genetic diversity and elevated inbreeding levels. However, whole-genome sequence data is lacking from this population. Here, we include five new whole-genome sequences of K'gari dingoes. We analyze a total of 18 whole-genome sequences of dingoes sampled from mainland Australia and K'gari to assess the genomic consequences of their demographic histories. Long (>1 Mb) runs of homozygosity (ROHs)-indicators of inbreeding-are elevated in all sampled dingoes. However, K'gari dingoes showed significantly higher levels of very long ROH (>5 Mb), providing genomic evidence for small population size, isolation, inbreeding, and a strong founder effect. Our results suggest that, despite current levels of inbreeding, the K'gari population is purging strongly deleterious mutations, which, in the absence of further reductions in population size, may facilitate the persistence of small populations despite low genetic diversity and isolation. However, there may be little to no purging of mildly deleterious alleles, which may have important long-term consequences, and should be considered by conservation and management programs.

Genomic consequences of isolation and inbreeding in an island dingo population

Dingoes come from an ancient canid lineage that originated in East Asia around 8000-11,000 years BP. As Australia's largest terrestrial predator, dingoes play an important ecological role. A small, protected population exists on a world heritage listed offshore island, K'gari (formerly Fraser Island). Concern regarding the persistence of dingoes on K'gari has risen due to their low genetic diversity and elevated inbreeding levels. However, whole-genome sequencing data is lacking from this population. Here, we include five new whole-genome sequences of K'gari dingoes. We analyze a total of 18 whole genome sequences of dingoes sampled from mainland Australia and K'gari to assess the genomic consequences of their demographic histories. Long (>1 Mb) runs of homozygosity (ROH) - indicators of inbreeding - are elevated in all sampled dingoes. However, K'gari dingoes showed significantly higher levels of very long ROH (>5 Mb), providing genomic evidence for small population size, isolation, inbreeding, and a strong founder effect. Our results suggest that, despite current levels of inbreeding, the K'gari population is purging strongly deleterious mutations, which, in the absence of further reductions in population size, may facilitate the persistence of small populations despite low genetic diversity and isolation. However, there may be little to no purging of mildly deleterious alleles, which may have important long-term consequences, and should be considered by conservation and management programs.

Dingoes, companions in life and death: The significance of archaeological canid burial practices in Australia

The dingo, also known as the Australian native dog, was introduced in the late Holocene. Dingoes were primarily wild animals but a number resided in Aboriginal people's camps. Traditionally, these individuals were taken from wild litters before weaning and raised by Aboriginal people. It is generally believed that these dingoes were not directly provided for, and upon sexual maturity, returned to reproduce in the wild. However, some died while in the company of people and, were buried in occupation sites. This Australian practice parallels the burial of domestic dogs in many regions of the Asia-Pacific and beyond but has attracted very little research. We explore the historical and archaeological evidence for dingo burial, examining its different forms, chronological and geographic distribution, and cultural significance. Dingoes were usually buried in the same manner as Aboriginal community members and often in areas used for human burial, sometimes alongside people. This practice probably occurred from the time of their introduction until soon after European colonisation. We present a case study of dingo burials from Curracurrang Rockshelter (NSW) which provides insights into the lives of ancient tame dingoes, and suggests that domestication and genetic continuity between successive camp-dwelling generations may have occurred prior to European contact.

Genome-wide variant analyses reveal new patterns of admixture and population structure in Australian dingoes

Admixture between species is a cause for concern in wildlife management. Canids are particularly vulnerable to interspecific hybridisation, and genetic admixture has shaped their evolutionary history. Microsatellite DNA testing, relying on a small number of genetic markers and geographically restricted reference populations, has identified extensive domestic dog admixture in Australian dingoes and driven conservation management policy. But there exists a concern that geographic variation in dingo genotypes could confound ancestry analyses that use a small number of genetic markers. Here, we apply genome-wide single-nucleotide polymorphism (SNP) genotyping to a set of 402 wild and captive dingoes collected from across Australia and then carry out comparisons to domestic dogs. We then perform ancestry modelling and biogeographic analyses to characterise population structure in dingoes and investigate the extent of admixture between dingoes and dogs in different regions of the continent. We show that there are at least five distinct dingo populations across Australia. We observed limited evidence of dog admixture in wild dingoes. Our work challenges previous reports regarding the occurrence and extent of dog admixture in dingoes, as our ancestry analyses show that previous assessments severely overestimate the degree of domestic dog admixture in dingo populations, particularly in south-eastern Australia. These findings strongly support the use of genome-wide SNP genotyping as a refined method for wildlife managers and policymakers to assess and inform dingo management policy and legislation moving forwards.

Diet of the Dingo in Subtropical Australian Forests: Are Small, Threatened Macropods at Risk?

Carnivores fulfil important ecological roles in natural systems yet can also jeopardise the persistence of threatened species. Understanding their diet is, therefore, essential for managing populations of carnivores, as well as those of their prey. This study was designed to better understand the diet of an Australian apex predator, the dingo, and determine whether it poses a threat to at-risk small macropods in two floristically different yet geographically close reserves in subtropical Australia. Based on an analysis of 512 scats, dingo diets comprised 34 different prey taxa, of which 50% were common between reserves. Our findings add support to the paradigm that dingoes are opportunistic and generalist predators that prey primarily on abundant mammalian fauna. Their diets in the Border Ranges were dominated by possum species (frequency of occurrence (FOC) = 92.5%), while their diets in Richmond Range were characterised by a high prevalence of pademelon species (FOC = 46.9%). Medium-sized mammals were the most important dietary items in both reserves and across all seasons. The dietary frequency of medium-sized mammals was generally related to their availability (indexed by camera trapping); however, the avoidance of some species with high availability indicates that prey accessibility may also be important in dictating their dietary choices. Other prey categories were supplementary to diets and varied in importance according to seasonal changes in their availability. The diets included two threatened macropods, the red-legged pademelon and black-striped wallaby. Our availability estimates, together with earlier dietary studies spanning 30 years, suggest that the red-legged pademelon is resilient to the observed predation. The black-striped wallaby occurred in only two dingo scats collected from Richmond Range and was not detected by cameras so the threat to this species could not be determined. Two locally abundant but highly threatened species (the koala and long-nosed potoroo) were not detected in the dingoes' diets, suggesting dingoes do not at present pose a threat to these populations. Our study highlights the importance of site-based assessments, population monitoring and including data on prey availability in dietary investigations.

The Australasian dingo archetype: de novo chromosome-length genome assembly, DNA methylome, and cranial morphology

BACKGROUND

One difficulty in testing the hypothesis that the Australasian dingo is a functional intermediate between wild wolves and domesticated breed dogs is that there is no reference specimen. Here we link a high-quality de novo long-read chromosomal assembly with epigenetic footprints and morphology to describe the Alpine dingo female named Cooinda. It was critical to establish an Alpine dingo reference because this ecotype occurs throughout coastal eastern Australia where the first drawings and descriptions were completed.

FINDINGS

We generated a high-quality chromosome-level reference genome assembly (Canfam_ADS) using a combination of Pacific Bioscience, Oxford Nanopore, 10X Genomics, Bionano, and Hi-C technologies. Compared to the previously published Desert dingo assembly, there are large structural rearrangements on chromosomes 11, 16, 25, and 26. Phylogenetic analyses of chromosomal data from Cooinda the Alpine dingo and 9 previously published de novo canine assemblies show dingoes are monophyletic and basal to domestic dogs. Network analyses show that the mitochondrial DNA genome clusters within the southeastern lineage, as expected for an Alpine dingo. Comparison of regulatory regions identified 2 differentially methylated regions within glucagon receptor GCGR and histone deacetylase HDAC4 genes that are unmethylated in the Alpine dingo genome but hypermethylated in the Desert dingo. Morphologic data, comprising geometric morphometric assessment of cranial morphology, place dingo Cooinda within population-level variation for Alpine dingoes. Magnetic resonance imaging of brain tissue shows she had a larger cranial capacity than a similar-sized domestic dog.

CONCLUSIONS

These combined data support the hypothesis that the dingo Cooinda fits the spectrum of genetic and morphologic characteristics typical of the Alpine ecotype. We propose that she be considered the archetype specimen for future research investigating the evolutionary history, morphology, physiology, and ecology of dingoes. The female has been taxidermically prepared and is now at the Australian Museum, Sydney.

The Australasian dingo archetype: De novo chromosome-length genome assembly, DNA methylome, and cranial morphology

Background

One difficulty in testing the hypothesis that the Australasian dingo is a functional intermediate between wild wolves and domesticated breed dogs is that there is no reference specimen. Here we link a high-quality de novo long read chromosomal assembly with epigenetic footprints and morphology to describe the Alpine dingo female named Cooinda. It was critical to establish an Alpine dingo reference because this ecotype occurs throughout coastal eastern Australia where the first drawings and descriptions were completed.

Findings

We generated a high-quality chromosome-level reference genome assembly (Canfam_ADS) using a combination of Pacific Bioscience, Oxford Nanopore, 10X Genomics, Bionano, and Hi-C technologies. Compared to the previously published Desert dingo assembly, there are large structural rearrangements on Chromosomes 11, 16, 25 and 26. Phylogenetic analyses of chromosomal data from Cooinda the Alpine dingo and nine previously published de novo canine assemblies show dingoes are monophyletic and basal to domestic dogs. Network analyses show that the mtDNA genome clusters within the southeastern lineage, as expected for an Alpine dingo. Comparison of regulatory regions identified two differentially methylated regions within glucagon receptor GCGR and histone deacetylase HDAC4 genes that are unmethylated in the Alpine dingo genome but hypermethylated in the Desert dingo. Morphological data, comprising geometric morphometric assessment of cranial morphology place dingo Cooinda within population-level variation for Alpine dingoes. Magnetic resonance imaging of brain tissue show she had a larger cranial capacity than a similar-sized domestic dog.

Conclusions

These combined data support the hypothesis that the dingo Cooinda fits the spectrum of genetic and morphological characteristics typical of the Alpine ecotype. We propose that she be considered the archetype specimen for future research investigating the evolutionary history, morphology, physiology, and ecology of dingoes. The female has been taxidermically prepared and is now at the Australian Museum, Sydney.

The human-initiated model of wolf domestication - An expansion based on human-dingo relations in Aboriginal Australia

The historically known relationship of interspecies companionship between Aboriginal foraging communities in Australia and free-ranging dingoes provides a model for understanding the human-canid relations that gave rise to the first domesticated dogs. Here, we propose that a broadly similar relationship might have developed early in time between wild-living wolves and mobile groups of foragers in Late Pleistocene Eurasia, with hunter-gatherers routinely raiding wild wolf dens for pre-weaned pups, which were socialized to humans and kept in camp as tamed companions ("pets"). We outline a model in which captive wolf pups that reverted to the wild to breed when they were sexually mature established their territories in the vicinity of foraging communities - in a "liminal" ecological zone between humans and truly wild-living wolves. Many (or most) of the wolf pups humans took from the wilderness to rear in camp may have derived from these liminal dens where the breeding pairs had been under indirect human selection for tameness over many generations. This highlights the importance of the large seasonal hunting/aggregation camps associated with mammoth kill-sites in Gravettian/Epigravettian central Europe. Large numbers of foragers gathered regularly at these locations during the wild wolf birthing season. We infer that if a pattern of this kind occurred over long periods of time then there might have been a pronounced effect on genetic variation in free-ranging wolves that denned and whelped in the liminal zones in the vicinity of these human seasonal aggregation sites. The argument is not that wolves were domesticated in central Europe. Rather, it is this pattern of hunter-gatherers who caught and reared wild wolf pups gathering seasonally in large numbers that might have been the catalyst for the early changes leading to the first domesticated dogs - whether in western Eurasia or further afield.

Irrupting prey populations in the absence of a mammalian apex predator drive shifts in prey selection by eagles

Removal of apex predators can have far-reaching effects on the organization and structure of ecosystems. This occurs because apex predators can exert strong suppressive effects on their prey and competitors and perturbation of these interactions can shift the balance of interactions between dyads of species at lower trophic levels and trigger trophic cascades. Dingoes (Canis dingo) are Australia’s largest mammalian carnivore. Because they are a pest to livestock producers, dingo populations are suppressed in many regions. Suppression of dingo populations has been linked to a suite of ecosystem changes due to ensuing population irruptions of their prey and competitors. Here, we investigate the impact that the suppression of dingoes has on the diet of wedge-tailed eagles (Aquila audax) in Australia’s Strzelecki Desert. Wedge-tailed eagles are generalist predators that readily shift their diet in relation to prey availability. We assessed the abundance of species frequently preyed on by eagles and quantified prey remains at eagle nests located on either side of a dingo-proof fence where dingoes were common and rare, respectively. Wedge-tailed eagles consumed more species where dingoes were rare compared to where dingoes were common. Kangaroos (Macropodidae) and western bearded dragons (Pogona vitticeps) were more abundant and were consumed more frequently by eagles where dingoes were rare. Introduced European rabbits (Oryctolagus cuniculus) were the prey item most frequently identified at eagle nests. However, rabbits were more abundant and their remains were found at a higher proportion of nests where dingoes were common. Our results provide evidence that shifts in the composition of vertebrate assemblages associated with the presence/absence of dingoes, particularly the irruption of kangaroos, influence the diet of wedge-tailed eagles. More generally, by showing that the presence/absence of dingoes can influence the diet of wedge-tailed eagles, our study highlights how pervasive apex predators’ effects on ecosystems can be.

Eye contact and sociability data suggests that Australian dingoes were never domesticated

Dogs were the first animal to become domesticated by humans, and they represent a classic model system for unraveling the processes of domestication. We compare Australian dingo eye contact and socialization with Basenji and German Shepherd dog (GSD) breeds. Australian dingoes arrived in Australia 5,000-8,000 BP, and there is debate whether they were domesticated before their arrival. The Basenji represents a primitive breed that diverged from the remaining breeds early in the domestication process, while GSDs are a breed dog selected from existing domestic dogs in the late 1800s. We conducted a 4-phase study with unfamiliar and familiar investigators either sitting passively or actively calling each canid. We found 75% of dingoes made eye contact in each phase. In contrast, 86% of Basenjis and 96% of GSDs made eye contact. Dingoes also exhibited shorter eye-gaze duration than breed dogs and did not respond to their name being called actively. Sociability, quantified as a canid coming within 1 m of the experimenter, was lowest for dingoes and highest for GSDs. For sociability duration, dingoes spent less time within 1 m of the experimenter than either breed dog. When compared with previous studies, these data show that the dingo is behaviorally intermediate between wild wolves and Basenji dogs and suggest that it was not domesticated before it arrived in Australia. However, it remains possible that the accumulation of mutations since colonization has obscured historical behaviors, and dingoes now exist in a feralized retamed cycle. Additional morphological and genetic data are required to resolve this conundrum.

The myth of wild dogs in Australia: are there any out there?

Hybridisation between wild and domestic canids is a global conservation and management issue. In Australia, dingoes are a distinct lineage of wild-living canid with a controversial domestication status. They are mainland Australia’s apex terrestrial predator. There is ongoing concern that the identity of dingoes has been threatened from breeding with domestic dogs, and that feral dogs have established populations in rural Australia. We collate the results of microsatellite DNA testing from 5039 wild canids to explore patterns of domestic dog ancestry in dingoes and observations of feral domestic dogs across the continent. Only 31 feral dogs were detected, challenging the perception that feral dogs are widespread in Australia. First generation dingo × dog hybrids were similarly rare, with only 27 individuals identified. Spatial patterns of genetic ancestry across Australia identified that dingo populations in northern, western and central Australia were largely free from domestic dog introgression. Our findings challenge the perception that dingoes are virtually extinct in the wild and that feral dogs are common. A shift in terminology from wild dog to dingo would better reflect the identity of these wild canids and allow more nuanced debate about the balance between conservation and management of dingoes in Australia.

Sniffing out danger: rapid antipredator training of an endangered marsupial

Globally, predator aversion training has assisted naive prey species to learn to evade introduced predators, improving translocation success. Eastern barred bandicoots (Perameles gunnii; hereafter ‘bandicoot’) are extinct on mainland Australia due to habitat loss and introduced predators, and are the focus of a long-term captive breeding and reintroduction program. Our trials showed that captive bandicoots failed to recognise cat (Felis catus) scents as belonging to a predator, suggesting prey naivety towards cats. We trialled five stimuli to elicit short-term fear behaviour in bandicoots. An automatic compressed air spray and automatic bin lid were most effective. We coupled these stimuli with cat urine during predator aversion training and presented them to bandicoots on three occasions. Bandicoots learnt to avoid the area containing cat urine, suggesting bandicoots are capable of learning new behaviours rapidly. Six trained and five untrained captive bandicoots where released onto Summerland Peninsular, Phillip Island (with cat densities at 1.1 cats/km2). Both had high survival and recapture rates 7 months after release. Training endangered species to avoid introduced predators could assist with long-term species recovery.

Conservation concerns associated with low genetic diversity for K'gari-Fraser Island dingoes

The dingo population on world heritage-listed K'gari-Fraser Island (K'gari) is amongst the most well-known in Australia. However, an absence of population genetic data limits capacity for informed conservation management. We used 9 microsatellite loci to compare the levels of genetic diversity and genetic structure of 175 K'gari dingo tissue samples with 264 samples from adjacent mainland regions. Our results demonstrated that the K'gari population has significantly lower genetic diversity than mainland dingoes (A_R, H_E, P_AR; p < 0.05) with a fourfold reduction in effective population size (N_e = 25.7 vs 103.8). There is also strong evidence of genetic differentiation between the island and mainland populations. These results are in accordance with genetic theory for small, isolated, island populations, and most likely the result of low initial diversity and founder effects such as bottlenecks leading to decreased diversity and drift. As the first study to incorporate a large sample set of K'gari dingoes, this provides invaluable baseline data for future research, which should incorporate genetic and demographic monitoring to ensure long-term persistence. Given that human-associated activities will continue to result in dingo mortality, it is critical that genetic factors are considered in conservation management decisions to avoid deleterious consequences for this iconic dingo population.

What the dingo says about dog domestication

Worldwide, dogs (Canis familiaris) are certainly the most common domesticate (900 million according to the World Atlas) and are sometimes used as a proxy for human presence. Dogs were the first and therefore arguably most important species ever to be domesticated. It is widely accepted that the domestic dog is a descendent of Pleistocene gray wolves (Canis lupus), possibly of a population now extinct. How can an extant canid, the dingo (Canis dingo or Canis familiaris), whose status as a species and as a domesticate is controversial, improve our understanding of the ancient process of domesticating the dog? Here I review anatomical, behavioral, biogeographic, and molecular evidence on the appropriate status of dingoes in a historical context. Dingoes are now the major apex predator in Australia aside from humans. Different sources of evidence have suggested different times of arrival in Greater Australia for humans and canids and different degrees of intimacy or domestication between humans and canids. Just as domestic dogs are often accorded near‐human status, dingoes have special relationships with human families, but reproductively and behaviorally they remain independent. In sum, traits of the dingo reflect its lupine ancestry, a certain degree of accommodation to human company, and unique adaptations to the demands of its habitat. Emphasizing that domestication is a long‐term process, not an event, helps clarify the ambiguous status of dingoes.

What Is a Dingo? The Phenotypic Classification of Dingoes by Aboriginal and Torres Strait Islander Residents in Northern Australia

Simple Summary

Dingoes are an Australian icon with cultural, as well as ecological, value, yet defining a dingo is complicated by hybridisation with domestic dogs. Northern Australia is a high-risk zone for the arrival of rabies, a disease which affects dogs (including dingoes) and people. In a rabies outbreak, Aboriginal and Torres Strait Islander peoples who live in this region would want dingoes protected. We visited the Northern Peninsula Area (NPA), Queensland, in 2018–2019 and surveyed Aboriginal and Torres Strait Islander residents about how they define dingoes, using pictures from camera traps previously placed and operated in the area. We found that dingo definition was based on characteristics traditionally associated with the iconic dingo (medium to large-framed dogs, with a long nose, pointed ears, narrow abdomen, bushy tail, smooth tan coats, and white feet and tail tip) but hybrid features, such as curled tail or a lack of white points, were also acceptable features. Local definitions are important when designing and implementing management plans so that actions are supported by local communities, and our findings are a useful guide for identifying dingoes in the NPA so that, in the event of a rabies outbreak, locally valued dingoes could be identified and protected.

Abstract

Dingo classification and management is complicated by hybridisation with domestic dogs. Northern Australia is a relatively high-risk zone for a rabies incursion, and in the event of an incursion, Aboriginal and Torres Strait Islander peoples who reside in this region would prioritise the protection of dingoes. Therefore, the classification of dingoes in this context is important. Twelve pictures of canids with features associated with both dingoes and domestic dogs from camera traps in the Northern Peninsula Area (NPA), northern Queensland, were shown to Aboriginal and Torres Strait Islander rangers (n = 3), biosecurity officers (n = 2), environmental health workers (n = 2), and residents (n = 39) in the NPA. Nearly all pictures (10/12) were classified as dingo or domestic dog (none as hybrid) and two were inconclusive (no overall agreement). Dingoes were consistently identified as medium to large-framed dogs, with a long nose, pointed ears, narrow abdomen, a bushy or feathered tail, and smooth coats of a single base colour. Some hybrid features were acceptable, including sable coats, lack of white tail tip or feet, and curled tail. These findings are a preliminary guide for identifying canids in the NPA region for whom management might be controversial. Building on this approach via further consultation with residents is needed to inform rabies response policy. Our approach using locally acquired camera trap pictures could also be extended to other regions in which dingoes have value but their management is controversial.

The Australian dingo: untamed or feral?

BACKGROUND

The Australian dingo continues to cause debate amongst Aboriginal people, pastoralists, scientists and the government in Australia. A lingering controversy is whether the dingo has been tamed and has now reverted to its ancestral wild state or whether its ancestors were domesticated and it now resides on the continent as a feral dog. The goal of this article is to place the discussion onto a theoretical framework, highlight what is currently known about dingo origins and taxonomy and then make a series of experimentally testable organismal, cellular and biochemical predictions that we propose can focus future research.

DISCUSSION

We consider a canid that has been unconsciously selected as a tamed animal and the endpoint of methodical or what we now call artificial selection as a domesticated animal. We consider wild animals that were formerly tamed as untamed and those wild animals that were formerly domesticated as feralized. Untamed canids are predicted to be marked by a signature of unconscious selection whereas feral animals are hypothesized to be marked by signatures of both unconscious and artificial selection. First, we review the movement of dingo ancestors into Australia. We then discuss how differences between taming and domestication may influence the organismal traits of skull morphometrics, brain and size, seasonal breeding, and sociability. Finally, we consider cellular and molecular level traits including hypotheses concerning the phylogenetic position of dingoes, metabolic genes that appear to be under positive selection and the potential for micronutrient compensation by the gut microbiome.

CONCLUSIONS

Western Australian Government policy is currently being revised to allow the widespread killing of the Australian dingo. These policies are based on an incomplete understanding of the evolutionary history of the canid and assume the dingo is feralized. However, accumulated evidence does not definitively show that the dingo was ever domesticated and additional focused research is required. We suggest that incorporating ancient DNA data into the debate concerning dingo origins will be pivotal to understanding the evolutionary history of the canid. Further, we advocate that future morphological, behavioural and genetic studies should focus on including genetically pure Alpine and Desert dingoes and not dingo-dog hybrids. Finally, we propose that future studies critically examine genes under selection in the dingo and employ the genome from a wild canid for comparison.

Pets and pests: a review of the contrasting economics and fortunes of dingoes and domestic dogs in Australia, and a proposed new funding scheme for non-lethal dingo management

Carnivore conservation and management is complex and expensive, and significant ongoing management costs may inhibit the development of new tools and any subsequent transition away from lethal control. We review and compare the economic costs and benefits of dingoes and domestic dogs in Australia and suggest that public affinity for domestic dogs may be co-opted into yielding more positive management outcomes for dingoes. Whereas Australians spend over AU$10 billion annually on purchasing and maintaining 4.2 million domestic dogs, landowners and government spend at least AU$30 million attempting to limit the density and distribution of dingoes, feral dogs, and their hybrids. These contrasting investments highlight the dual response of society towards domestic and wild members of the Canis genus. We suggest that a modest conservation levy on the sale of pet dogs or dog food, or both, could secure long-term funding to support efficacious non-lethal management of dingo impacts. A modest levy could generate AU$30 million annually, funding the development of non-lethal dingo-management tools without compromising existing management practices while new tools are investigated. Ultimately, a transition away from controlling dingoes through culling or exclusion fencing, to managing the negative impacts of dingoes could result in both more successful and sustainable management outcomes of dingoes and support the ecological, cultural and economic benefits they confer as Australia’s apex predator.

Interactions between dingoes and introduced wild ungulates: concepts, evidence and knowledge gaps

The dingo (Canis dingo or C. familiaris, including hybrids with feral dogs) is the apex carnivore on mainland Australia. Fifteen non-native ungulate species have established wild populations in Australia. Dingoes are managed to reduce impacts on domestic ungulates, and introduced wild ungulates are managed to reduce impacts on natural ecosystems and to minimise competition with domestic ungulates. There is speculation about the extent to which (1) dingoes limit the abundances of introduced wild ungulates, and (2) introduced wild ungulates sustain dingo populations. We reviewed the literature to identify potential ecological interactions between dingoes and introduced wild ungulates, and to synthesise evidence for interactions between dingoes and each ungulate species (including the percentage frequency occurrence (%FO) of ungulates in dingo diets). Eleven of the 15 ungulate species were recorded in the diet of dingoes, with the highest %FO occurrences reported for feral goats (73%) and cattle (60%). Two studies concluded that dingoes reduced ungulate abundances (feral goat (Capra hircus) and feral donkey (Equus asinus)), and two studies concluded that dingoes did not regulate feral pig (Sus scrofa) abundances. A fifth study concluded that dingoes exhibited a Type III functional response to increasing sambar deer (Cervus unicolor) abundances. A sixth study concluded that dingoes made relatively little use of hunter-shot sambar deer carcasses. We propose that interactions between dingoes and introduced wild ungulates depend on the sex–age classes vulnerable to dingo predation, dingo pack sizes, the availability of escape terrain for ungulates and the availability of alternative foods for dingoes. The interplay between environmental conditions and the population growth rate of ungulates, and hence their ability to sustain losses from predation, could also be important. We predict that dingoes will have most impact on the abundance of smaller ungulate species and neonates.

New dates on dingo bones from Madura Cave provide oldest firm evidence for arrival of the species in Australia

The dingo is the only placental land mammal aside from murids and bats to have made the water crossings to reach Australia prior to European arrival. It is thought that they arrived as a commensal animal with people, some time in the mid Holocene. However, the timing of their arrival is still a subject of major debate with published age estimates varying widely. This is largely because the age estimates for dingo arrival are based on archaeological deposit dates and genetic divergence estimates, rather than on the dingo bones themselves. Currently, estimates vary from between 5000–4000 years ago, for finds from archaeological contexts, and as much as 18,000 based on DNA age estimates. The timing of dingo arrival is important as post arrival they transformed Indigenous societies across mainland Australia and have been implicated in the extinction of a number of animals including the Tasmanian tiger. Here we present the results of direct dating of dingo bones from their oldest known archaeological context, Madura Cave on the Nullarbor Plain. These dates demonstrate that dingoes were in southern Australia by between 3348 and 3081 years ago. We suggest that following their introduction the dingo may have spread extremely rapidly throughout mainland Australia.

Elucidating biogeographical patterns in Australian native canids using genome wide SNPs

Dingoes play a strong role in Australia's ecological framework as the apex predator but are under threat from hybridization and agricultural control programs. Government legislation lists the conservation of the dingo as an important aim, yet little is known about the biogeography of this enigmatic canine, making conservation difficult. Mitochondrial and Y chromosome DNA studies show evidence of population structure within the dingo. Here, we present the data from Illumina HD canine chip genotyping for 23 dingoes from five regional populations, and five New Guinea Singing Dogs to further explore patterns of biogeography using genome-wide data. Whole genome single nucleotide polymorphism (SNP) data supported the presence of three distinct dingo populations (or ESUs) subject to geographical subdivision: southeastern (SE), Fraser Island (FI) and northwestern (NW). These ESUs should be managed discretely. The FI dingoes are a known reservoir of pure, genetically distinct dingoes. Elevated inbreeding coefficients identified here suggest this population may be genetically compromised and in need of rescue; current lethal management strategies that do not consider genetic information should be suspended until further data can be gathered. D statistics identify evidence of historical admixture or ancestry sharing between southeastern dingoes and South East Asian village dogs. Conservation efforts on mainland Australia should focus on the SE dingo population that is under pressure from domestic dog hybridization and high levels of lethal control. Further data concerning the genetic health, demographics and prevalence of hybridization in the SE and FI dingo populations is urgently needed to develop evidence based conservation and management strategies.

Evolution of morphological integration in the skull of Carnivora (Mammalia): Changes in Canidae lead to increased evolutionary potential of facial traits

Morphological integration refers to the fact that different phenotypic traits of organisms are not fully independent from each other, and tend to covary to different degrees. The covariation among traits is thought to reflect properties of the species' genetic architecture and thus can have an impact on evolutionary responses. Furthermore, if morphological integration changes along the history of a group, inferences of past selection regimes might be problematic. Here, we evaluated the stability and evolution of the morphological integration of skull traits in Carnivora by using evolutionary simulations and phylogenetic comparative methods. Our results show that carnivoran species are able to respond to natural selection in a very similar way. Our comparative analyses show that the phylogenetic signal for pattern of integration is lower than that observed for morphology (trait averages), and that integration was stable throughout the evolution of the group. That notwithstanding, Canidae differed from other families by having higher integration, evolvability, flexibility, and allometric coefficients on the facial region. These changes might have allowed canids to rapidly adapt to different food sources, helping to explain not only the phenotypic diversification of the family, but also why humans were able to generate such a great diversity of dog breeds through artificial selection.

The function of play bows in Canis lupus and its variants: a comparison of dingo (Canis lupus dingo), dog (Canis lupus familiaris) and wolf puppies (Canis lupus)

Play bows represent a common, highly stereotyped behaviour across the genus Canis. However, much of what we know is limited to the wolf and its domestic derivative, the domestic dog. Here we continue to look at the function of play bows among subspecies/variants of Canis lupus by including the dingo. Comparing dingoes to wolves and dogs may provide further insight into the impact of domestication on play behaviour. We analysed play bows in three-to-six month old dingo puppies and compared the results to previous studies of wolves and dogs. The function of play bows in dingoes appears consistent with those observed in dogs and wolf puppies. However, subtle intraspecific differences (such as the frequency and duration of play bows, and vocalizations during play) were apparent, and warrant further investigation in the genus Canis, as well as the Family Canidae more broadly.

Size Variation under Domestication: Conservatism in the inner ear shape of wolves, dogs and dingoes

A broad sample of wolves, dingoes, and domesticated dogs of different kinds and time periods was used to identify changes in size and shape of the organs of balance and hearing related to domestication and to evaluate the potential utility of uncovered patterns as markers of domestication. Using geometric morphometrics coupled with non-invasive imaging and three-dimensional reconstructions, we exposed and compared complex structures that remain largely conserved. There is no statistically significant difference in the levels of shape variation between prehistoric and modern dogs. Shape variance is slightly higher for the different components of the inner ear in modern dogs than in wolves, but these differences are not significant. Wolves express a significantly greater level of variance in the angle between the lateral and the posterior canal than domestic dog breeds. Wolves have smaller levels of size variation than dogs. In terms of the shape of the semicircular canals, dingoes reflect the mean shape in the context of variation in the sample. This mirrors the condition of feral forms in other organs, in which there is an incomplete return to the characteristics of the ancestor. In general, morphological diversity or disparity in the inner ear is generated by scaling.

Mitochondrial DNA diversity of present-day Aboriginal Australians and implications for human evolution in Oceania

Aboriginal Australians are one of the more poorly studied populations from the standpoint of human evolution and genetic diversity. Thus, to investigate their genetic diversity, the possible date of their ancestors' arrival and their relationships with neighboring populations, we analyzed mitochondrial DNA (mtDNA) diversity in a large sample of Aboriginal Australians. Selected mtDNA single-nucleotide polymorphisms and the hypervariable segment haplotypes were analyzed in 594 Aboriginal Australians drawn from locations across the continent, chiefly from regions not previously sampled. Most (~78%) samples could be assigned to mtDNA haplogroups indigenous to Australia. The indigenous haplogroups were all ancient (with estimated ages >40 000 years) and geographically widespread across the continent. The most common haplogroup was P (44%) followed by S (23%) and M42a (9%). There was some geographic structure at the haplotype level. The estimated ages of the indigenous haplogroups range from 39 000 to 55 000 years, dates that fit well with the estimated date of colonization of Australia based on archeological evidence (~47 000 years ago). The distribution of mtDNA haplogroups in Australia and New Guinea supports the hypothesis that the ancestors of Aboriginal Australians entered Sahul through at least two entry points. The mtDNA data give no support to the hypothesis of secondary gene flow into Australia during the Holocene, but instead suggest long-term isolation of the continent.

Mesopredator Management: Effects of Red Fox Control on the Abundance, Diet and Use of Space by Feral Cats

Apex predators are subject to lethal control in many parts of the world to minimize their impacts on human industries and livelihoods. Diverse communities of smaller predators-mesopredators-often remain after apex predator removal. Despite concern that these mesopredators may be 'released' in the absence of the apex predator and exert negative effects on each other and on co-occurring prey, these interactions have been little studied. Here, we investigate the potential effects of competition and intraguild predation between red foxes (Vulpes vulpes) and feral cats (Felis catus) in south-eastern Australia where the apex predator, the dingo (Canis dingo), has been extirpated by humans. We predicted that the larger fox would dominate the cat in encounters, and used a fox-removal experiment to assess whether foxes affect cat abundance, diet, home-range and habitat use. Our results provide little indication that intraguild predation occurred or that cats responded numerically to the fox removal, but suggest that the fox affects some aspects of cat resource use. In particular, where foxes were removed cats increased their consumption of invertebrates and carrion, decreased their home range size and foraged more in open habitats. Fox control takes place over large areas of Australia to protect threatened native species and agricultural interests. Our results suggest that fox control programmes could lead to changes in the way that cats interact with co-occurring prey, and that some prey may become more vulnerable to cat predation in open habitats after foxes have been removed. Moreover, with intensive and more sustained fox control it is possible that cats could respond numerically and alter their behaviour in different ways to those documented herein. Such outcomes need to be considered when estimating the indirect impacts of fox control. We conclude that novel approaches are urgently required to control invasive mesopredators at the same time, especially in areas where apex predators are absent.

Brain size/body weight in the dingo (Canis dingo): comparisons with domestic and wild canids

Endocranial volume was measured in a large sample (n = 128) of free-ranging dingoes (Canis dingo) where body size was known. The brain/body size relationship in the dingoes was compared with populations of wild (Family Canidae) and domestic canids (Canis familiaris). Despite a great deal of variation among wild and domestic canids, the brain/body size of dingoes forms a tight cluster within the variation of domestic dogs. Like dogs, free-ranging dingoes have paedomorphic crania; however, dingoes have a larger brain and are more encephalised than most domestic breeds of dog. The dingo’s brain/body size relationship was similar to those of other mesopredators (medium-sized predators that typically prey on smaller animals), including the dhole (Cuon alpinus) and the coyote (Canis latrans). These findings have implications for the antiquity and classification of the dingo, as well as the impact of feralisation on brain size. At the same time, it highlights the difficulty in using brain/body size to distinguish wild and domestic canids.

Mammals on Western Australian islands: occurrence and preliminary analysis

We present a database of indigenous and non-indigenous terrestrial mammal records on Western Australian (WA) islands, updated from a database we published more than 20 years ago. The database includes records of 88 indigenous species on 155 islands, compared with 54 indigenous species on 141 WA islands in the paper by Abbott and Burbidge in CALMScience, Volume 1, pp. 259–324. The database also provides 266 records of 21 species of non-indigenous mammal species on 138 WA islands, more than double the number of records in the earlier review. Of the 33 threatened and near-threatened WA non-volant mammals, 16 occur naturally (and have persisted) on WA islands, five additional species occur on islands outside WA, 14 successful conservation translocations of 10 species have been undertaken to WA islands, and six species have been successfully translocated to 12 islands outside WA – two of which do not currently occur on WA islands. The house mouse now accounts for the largest number of extant records of non-indigenous species. Even with the increasing number of conservation translocations to mainland islands (fenced exclosures), WA islands remain essential for the effective conservation of several threatened and near-threatened mammals and many of the translocations to mainland islands have been sourced from islands.

The bark, the howl and the bark-howl: Identity cues in dingoes' multicomponent calls

Dingoes (genus Canis) produce a stereotyped bark-howl vocalisation, which is a unimodal complex signal formed by the concatenation of two call types (a bark and a howl). Bark-howls may function as alarm signals, although there has been no empirical investigation of this vocalisation's structure or function. We quantified the content and efficacy of the bark and howl segments separately and when combined, using 140 calls from 10 individuals. We found that both segments are individually distinctive, although howl segments are more accurately classified, suggesting a higher level of individuality. Furthermore, howls convey signature characteristics that are conserved across different contexts of production, and thus may act as 'identity signals'. The individual distinctiveness of full bark-howls increases above that of isolated segments, which may be a result of selection on improved signal discriminability. Propagation tests revealed that bark-howls are best described as medium-range signals, with both segments potentially allowing for individual discrimination up to 200m regardless of environmental conditions. We discuss our findings regarding the fitness benefits of encoding identity cues in a potential alarm call and propose additional hypotheses for the function(s) of bark and howl segments.

Insects for breakfast and whales for dinner: the diet and body condition of dingoes on Fraser Island (K'gari)

Top-predators play stabilising roles in island food webs, including Fraser Island, Australia. Subsidising generalist predators with human-sourced food could disrupt this balance, but has been proposed to improve the overall health of the island’s dingo (Canis lupus dingo) population, which is allegedly ‘starving’ or in ‘poor condition’. We assess this hypothesis by describing the diet and health of dingoes on Fraser Island from datasets collected between 2001 and 2015. Medium-sized mammals (such as bandicoots) and fish were the most common food items detected in dingo scat records. Stomach contents records revealed additional information on diet, such as the occurrence of human-sourced foods. Trail camera records highlighted dingo utilisation of stranded marine fauna, particularly turtles and whales. Mean adult body weights were higher than the national average, body condition scores and abundant-excessive fat reserves indicated a generally ideal-heavy physical condition, and parasite loads were low and comparable to other dingo populations. These data do not support hypotheses that Fraser Island dingoes have restricted diets or are in poor physical condition. Rather, they indicate that dingoes on Fraser Island are capable of exploiting a diverse array of food sources which contributes to the vast majority of dingoes being of good-excellent physical condition.

From den to dust: longevity of three dingoes (Canis lupus dingo) on Fraser Island (K'gari)

The Australian dingo (Canis lupus dingo) is a common and well studied species, yet very little is known about the longevity of free-ranging individuals because most field studies are too short to obtain this information. Fraser Island, off the east coast of Queensland, contains a closed dingo population of high conservation value, and where a portion of them have been captured and subsequently monitored using ear tags and microchips for management purposes since 2002. We use these data to describe the longevity of three individual dingoes, including one female captured, microchipped and ear-tagged as a subadult in February 2003, recaptured and retagged in March 2012, and then found dead in October 2014. Longevity data and other observations demonstrate that wild dingoes can live for at least 13 years and successfully produce litters for at least 10 years. Such life-history data are useful for evaluating the dynamics and stability of dingo populations of conservation concern.

Novel use for a predator scent: preliminary data suggest that wombats avoid recolonising collapsed burrows following application of dingo scent

Southern hairy-nosed wombats (Lasiorhinus latifrons) are fossorial marsupials that live in large burrow systems where their digging behaviour brings them into conflict with agriculture. In the absence of any available control options, non-selective culling is the primary mode of wombat management. This approach is contentious and has unknown implications for long-term wombat conservation. Predator scents, however, have been effective in altering behaviours of some herbivores and may offer a non-lethal alternative to culling if they discourage wombats from burrowing in perceived problem areas. Therefore, we trialled two dingo scents (faeces, urine) over 75 days to determine whether these scents would deter wombats from repopulating collapsed burrows. Ten inhabited single-entrance burrows were excavated over three days (to allow time for inhabitants to exit), collapsed and then filled in. Five burrows, separated by at least 200 m, were used for dingo scent treatments (three urine; two faeces) and three burrows, separated by the same distance, served as negative controls (unscented), along with two ‘farmer-monitored’ active controls (dog urine and a dingo carcass). We used a rank-sum score to assess wombat activity: scratching was scored with a value of (1), digging (2), and recolonisation (5), with each value reflecting total energy and time spent in the vicinity of the treatment. We fitted Generalised Estimating Equations (repeated-measures, Fisher Method) to explain variation within, and across, treatment and control burrows. Within 20 days, all 10 sites had signs of wombat activity that ranged from fresh digging, to fully functional burrows. Among the five treatment sites, scratching and tracks identified wombats as being present, but they did not dig. After 75 days, the five sites treated with dingo scents had minimal activity and no new burrows, while wombats recolonised all control burrows. Though we used only 10 burrows for this preliminary study, our findings suggest the need for further testing of dingo scents as a tool for dissuading wombats from digging and recolonisation of collapsed burrows. This represents a novel use for a predator scent, in that prey may remain in the vicinity near the deterrent, but curb problematic behaviours of economic consequence.