1
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Bailey N, Ruiz C, Tosi A, Stevison L. Genomic analysis of the rhesus macaque ( Macaca mulatta) and the cynomolgus macaque ( Macaca fascicularis) uncover polygenic signatures of reinforcement speciation. Ecol Evol 2023; 13:e10571. [PMID: 37849934 PMCID: PMC10577069 DOI: 10.1002/ece3.10571] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2023] [Revised: 09/11/2023] [Accepted: 09/12/2023] [Indexed: 10/19/2023] Open
Abstract
Speciation can involve phases of divergent adaptation in allopatry and ecological/reproductive character displacement in sympatry or parapatry. Reproductive character displacement can result as a means of preventing hybridization, a process known as reinforcement speciation. In this study, we use whole-genome sequencing (WGS) of two closely related primate species that have experienced introgression in their history, the rhesus (Macaca mulatta) and cynomolgus (M. fascicularis) macaques, to identify genes exhibiting reproductive character displacement and other patterns consistent with reinforcement speciation. Using windowed scans of various population genetic statistics to identify signatures of reinforcement, we find 184 candidate genes associated with a variety of functions, including an overrepresentation of multiple neurological functions and several genes involved in sexual development and gametogenesis. These results are consistent with a variety of genes acting in a reinforcement process between these species. We also find signatures of introgression of the Y-chromosome that confirm previous studies suggesting male-driven introgression of M. mulatta into M. fascicularis populations. This study uses WGS to find evidence of the process of reinforcement in primates that have medical and conservation relevance.
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Affiliation(s)
- Nick Bailey
- Department of Biological SciencesAuburn UniversityAuburnAlabamaUSA
| | - Cody Ruiz
- Department of AnthropologyKent State UniversityKentOhioUSA
| | - Anthony Tosi
- Department of AnthropologyKent State UniversityKentOhioUSA
| | - Laurie Stevison
- Department of Biological SciencesAuburn UniversityAuburnAlabamaUSA
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2
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Crawford NG, McGreevy TJ, Mullen SP, Schneider CJ. The genetic basis of conspicuous coloration in the Guadeloupean anole: Evolution by sexual and ecological selection. Ecol Evol 2023; 13:e10266. [PMID: 37435022 PMCID: PMC10330958 DOI: 10.1002/ece3.10266] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2023] [Revised: 06/05/2023] [Accepted: 06/06/2023] [Indexed: 07/13/2023] Open
Abstract
Understanding how natural selection acts on the genome and contributes to the process of speciation is a primary aim of the study of evolution. Here we used natural variation in two subspecies of the Guadeloupean anole (Anolis marmoratus ssp.), from the island of Guadeloupe in the Lesser Antilles, to explore the genomic basis of adaptation and speciation in Anolis lizards. These subspecies inhabit distinct ecological environments and display marked differences in adult male color and pattern. We sequenced the complete genomes of 20 anoles, 10 from each subspecies, at 1.4× coverage. We used genome-wide scans of population differentiation, allele frequency spectrum, and linkage disequilibrium to characterize the genomic architecture within and between the subspecies. While most of the genome was undifferentiated, we observed five large divergent regions. Within these regions we identified blocks, 5 kb pairs in length, enriched for fixed single nucleotide polymorphisms. These blocks encompass 97 genes, two of which are candidate pigmentation genes. One is melanophilin (mlph), which helps transport melanosomes within melanocytes. The other is a cluster of differentiation 36 (cd36), which regulates carotenoid pigment sequestration. We used high-pressure liquid chromatography to confirm that carotenoid pigments are significantly more abundant in the conspicuous orange-pigmented skin of male A. m. marmoratus suggesting that cd36 may be regulating pigment deposition in this tissue. We identified for the first time a carotenoid gene that is a potential target of divergent sexual selection and may be contributing to the early stages of speciation in Anolis lizards.
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Affiliation(s)
| | - Thomas J. McGreevy
- Department of BiologyBoston UniversityBostonMassachusettsUSA
- Department of Natural Resources ScienceUniversity of Rhode IslandKingstonRhode IslandUSA
| | - Sean P. Mullen
- Department of BiologyBoston UniversityBostonMassachusettsUSA
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3
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Kenyon HL, Martin PR. Experimental test of selection against hybridization as a driver of avian signal divergence. J Evol Biol 2022; 35:1087-1098. [PMID: 35830488 DOI: 10.1111/jeb.14058] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2021] [Revised: 05/20/2022] [Accepted: 06/07/2022] [Indexed: 11/28/2022]
Abstract
Signal divergence may be pivotal in the generation and maintenance of new biodiversity by allowing closely related species to avoid some costs of co-occurrence. In birds, closely related, sympatric species are more divergent in their colour patterns than those that live apart, but the selective pressures driving this pattern remain unclear. Traditionally, signal divergence among sympatric species is thought to result from selection against hybridization, but broad evidence is lacking. Here, we conducted field experiments on naïve birds using spectrometer-matched, painted 3D-printed models to test whether selection against hybridization drives colour pattern divergence in the genus Poecile. To address selection for male colour pattern divergence without the influence of learning or the evolution of female discrimination in sympatry, we simulated secondary contact between Poecile species, and conducted mate choice experiments on naïve, allopatric females. We found that female black-capped chickadees (Poecile atricapillus) are equally likely to perform copulation solicitation displays to sympatric and allopatric heterospecific congeners when they are paired with conspecifics, but exhibit a strong preference for less divergent males when presented with paired heterospecific congeners. These results suggest that increased colour pattern divergence among sympatric species can reduce the likelihood of mixed mating in some contexts, and therefore should be favoured by selection against hybridization.
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Affiliation(s)
- Haley L Kenyon
- Department of Biology, Queen's University, Kingston, Ontario, Canada
| | - Paul R Martin
- Department of Biology, Queen's University, Kingston, Ontario, Canada
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4
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Scherrer R, Donihue CM, Reynolds RG, Losos JB, Geneva AJ. Dewlap colour variation in Anolis sagrei is maintained among habitats within islands of the West Indies. J Evol Biol 2022; 35:680-692. [PMID: 35535762 PMCID: PMC9321103 DOI: 10.1111/jeb.14002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2021] [Revised: 02/25/2022] [Accepted: 02/25/2022] [Indexed: 11/30/2022]
Abstract
Animal signals evolve in an ecological context. Locally adapting animal sexual signals can be especially important for initiating or reinforcing reproductive isolation during the early stages of speciation. Previous studies have demonstrated that dewlap colour in Anolis lizards can be highly variable between populations in relation to both biotic and abiotic adaptive drivers at relatively large geographical scales. Here, we investigated differentiation of dewlap coloration among habitat types at a small spatial scale, within multiple islands of the West Indies, to test the hypothesis that similar local adaptive processes occur over smaller spatial scales. We explored variation in dewlap coloration in the most widespread species of anole, Anolis sagrei, across three characteristic habitats spanning the Bahamas and the Cayman Islands, namely beach scrub, primary coppice forest and mangrove forest. Using reflectance spectrometry paired with supervised machine learning, we found significant differences in spectral properties of the dewlap between habitats within small islands, sometimes over very short distances. Passive divergence in dewlap phenotype associated with isolation-by-distance did not seem to explain our results. On the other hand, these habitat-specific dewlap differences varied in magnitude and direction across islands, and thus, our primary test for adaptation-parallel responses across islands-was not supported. We suggest that neutral processes or selection could be involved in several ways, including sexual selection. Our results shed new light on the scale at which signal colour polymorphism can be maintained in the presence of gene flow, and the relative role of local adaptation and other processes in driving these patterns of dewlap colour variation across islands.
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Affiliation(s)
- Raphaël Scherrer
- Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology, Harvard University, Cambridge, Massachusetts, USA
| | - Colin M Donihue
- Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology, Harvard University, Cambridge, Massachusetts, USA
| | - Robert Graham Reynolds
- Department of Biology, University of North Carolina Asheville, Asheville, North Carolina, USA
| | - Jonathan B Losos
- Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology, Harvard University, Cambridge, Massachusetts, USA
| | - Anthony J Geneva
- Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology, Harvard University, Cambridge, Massachusetts, USA
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5
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Williamson JE, Gillings MR, Nevatte RJ, Harasti D, Raoult V, Ghaly TM, Stow AJ, Smith TM, Gaston TF. Genetic differentiation in the threatened soft coral
Dendronephthya australis
in temperate eastern Australia. AUSTRAL ECOL 2022. [DOI: 10.1111/aec.13160] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
Affiliation(s)
- Jane E. Williamson
- School of Natural Sciences Macquarie University Sydney New South Wales Australia
| | - Michael R. Gillings
- School of Natural Sciences Macquarie University Sydney New South Wales Australia
| | - Ryan J. Nevatte
- School of Natural Sciences Macquarie University Sydney New South Wales Australia
| | - David Harasti
- Fisheries Research, NSW Department of Primary Industries Port Stephens Fisheries Institute Port Stephens New South Wales Australia
| | - Vincent Raoult
- School of Environmental and Life Sciences University of Newcastle Ourimbah New South Wales Australia
| | - Timothy M. Ghaly
- School of Natural Sciences Macquarie University Sydney New South Wales Australia
| | - Adam J. Stow
- School of Natural Sciences Macquarie University Sydney New South Wales Australia
| | - Timothy M. Smith
- School of Environmental and Life Sciences University of Newcastle Ourimbah New South Wales Australia
| | - Troy F. Gaston
- School of Environmental and Life Sciences University of Newcastle Ourimbah New South Wales Australia
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6
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Kenyon HL, Martin PR. Experimental tests of selection against heterospecific aggression as a driver of avian colour pattern divergence. J Evol Biol 2021; 34:1110-1124. [PMID: 33949033 DOI: 10.1111/jeb.13798] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2020] [Revised: 04/19/2021] [Accepted: 04/26/2021] [Indexed: 11/30/2022]
Abstract
Signal divergence is thought to reduce the costs of co-occurrence for closely related species and may thereby be important in the generation and maintenance of new biodiversity. In birds, closely related, sympatric species are more divergent in their colour patterns than those that live apart, but the selective pressures driving sympatric divergence in colour pattern are not well-understood. Here, we conducted field experiments on naïve birds using spectrometer-matched, painted, 3D-printed models to test whether selection against heterospecific aggression might drive colour pattern divergence in the genus Poecile. We found that territorial male black-capped chickadees (P. atricapillus) are equally likely to attack sympatric and allopatric congeners, and wintering flocks are equally likely to visit feeders occupied by sympatric and allopatric congeners, despite sympatric congeners being more divergent in colour pattern. These results suggest that either the concerted evolution of additional traits (e.g. discrimination), or interactions in sympatry that promote learning, is required if colour pattern divergence among sympatric species is to reduce heterospecific aggression. Alternatively, colour pattern divergence among sympatric species may be caused by other selective pressures, such as selection against hybridization or habitat partitioning and secondary signal adaptation.
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Affiliation(s)
- Haley L Kenyon
- Department of Biology, Queen's University, Kingston, ON, Canada
| | - Paul R Martin
- Department of Biology, Queen's University, Kingston, ON, Canada
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7
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Burress ED, Muñoz MM. Ecological Opportunity from Innovation, not Islands, Drove the Anole Lizard Adaptive Radiation. Syst Biol 2021; 71:93-104. [PMID: 33956152 DOI: 10.1093/sysbio/syab031] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2021] [Revised: 04/28/2021] [Accepted: 05/03/2021] [Indexed: 12/15/2022] Open
Abstract
Islands are thought to facilitate adaptive radiation by providing release from competition and predation. Anole lizards are considered a classic example of this phenomenon: different ecological specialists ('ecomorphs') evolved in the Caribbean Greater Antilles (Cuba, Hispaniola, Jamaica, and Puerto Rico), resulting in convergent assemblages that are not observed in mainland Latin America. Yet, the role of islands in facilitating adaptive radiation is more often implied than directly tested, leaving uncertain the role of biogeography in stimulating diversification. Here, we assess the proposed "island effect" on anole diversification using Bayesian phylogenetic comparative methods that explicitly incorporate rate heterogeneity across the tree and demonstrate two cases of would-be false positives. We discovered that rates of speciation and morphological evolution of island and mainland anoles are equivalent, implying that islands provide no special context for exceptionally rapid diversification. Likewise, rates of evolution were equivalent between island anoles that arose via in situ versus dispersal-based mechanisms, and we found no evidence for island-specific rates of speciation or morphological evolution. Nonetheless, the origin of Anolis is characterized by a speciation pulse that slowed over time - a classic signature of waning ecological opportunity. Our findings cast doubt on the notion that islands catalyzed the anole adaptive radiation and instead point to a key innovation, adhesive toe pads, which facilitated the exploitation of many arboreal niches sparsely utilized by other iguanian lizards. The selective pressures responsible for arboreal niche diversification differ between islands and the mainland, but the tempo of diversification driven by these discordant processes is indistinguishable.
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Affiliation(s)
- Edward D Burress
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, Connecticut, USA
| | - Martha M Muñoz
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, Connecticut, USA
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8
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Prates I, D'Angiolella AB, Rodrigues MT, Melo-Sampaio PR, de Queiroz K, Bell RC. Evolutionary drivers of sexual signal variation in Amazon Slender Anoles. Evolution 2021; 75:1361-1376. [PMID: 33860933 DOI: 10.1111/evo.14230] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2020] [Revised: 03/19/2021] [Accepted: 03/25/2021] [Indexed: 01/29/2023]
Abstract
Phenotypic variation among populations, as seen in the signaling traits of many species, provides an opportunity to test whether similar factors generate repeated phenotypic patterns in different parts of a species' range. We investigated whether genetic divergence, abiotic gradients, and sympatry with closely related species explain variation in the dewlap colors of Amazon Slender Anoles, Anolis fuscoauratus. To this aim, we characterized dewlap diversity in the field with respect to population genetic structure and evolutionary relationships, assessed whether dewlap phenotypes are associated with climate or landscape variables, and tested for nonrandom associations in the distributions of A. fuscoauratus phenotypes and sympatric Anolis species. We found that dewlap colors vary among but not within sites in A. fuscoauratus. Regional genetic clusters included multiple phenotypes, while populations with similar dewlaps were often distantly related. Phenotypes did not segregate in environmental space, providing no support for optimized signal transmission at a local scale. Instead, we found a negative association between certain phenotypes and sympatric Anolis species with similar dewlap color attributes, suggesting that interactions with closely related species promoted dewlap divergence among A. fuscoauratus populations. Amazon Slender Anoles emerge as a promising system to address questions about parallel trait evolution and the contribution of signaling traits to speciation.
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Affiliation(s)
- Ivan Prates
- Department of Vertebrate Zoology, National Museum of Natural History, Smithsonian Institution, Washington, District of Columbia, 20560.,Department of Ecology and Evolutionary Biology and Museum of Zoology, University of Michigan, Ann Arbor, Michigan, 48109
| | | | - Miguel T Rodrigues
- Departamento de Zoologia, Instituto de Biociências, Universidade de São Paulo, São Paulo, São Paulo, Brazil
| | - Paulo R Melo-Sampaio
- Departamento de Vertebrados, Museu Nacional, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil
| | - Kevin de Queiroz
- Department of Vertebrate Zoology, National Museum of Natural History, Smithsonian Institution, Washington, District of Columbia, 20560
| | - Rayna C Bell
- Department of Vertebrate Zoology, National Museum of Natural History, Smithsonian Institution, Washington, District of Columbia, 20560.,Herpetology Department, California Academy of Sciences, San Francisco, California, 94118
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9
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Rojas D, Lima AP, Momigliano P, Simões PI, Dudaniec RY, de Avila-Pires TCS, Hoogmoed MS, da Cunha Bitar YO, Kaefer IL, Amézquita A, Stow A. The evolution of polymorphism in the warning coloration of the Amazonian poison frog Adelphobates galactonotus. Heredity (Edinb) 2020; 124:439-456. [PMID: 31712747 PMCID: PMC7028985 DOI: 10.1038/s41437-019-0281-4] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2019] [Revised: 10/25/2019] [Accepted: 10/26/2019] [Indexed: 11/09/2022] Open
Abstract
While intraspecific variation in aposematic signals can be selected for by different predatory responses, their evolution is also contingent on other processes shaping genetic variation. We evaluate the relative contributions of selection, geographic isolation, and random genetic drift to the evolution of aposematic color polymorphism in the poison frog Adelphobates galactonotus, distributed throughout eastern Brazilian Amazonia. Dorsal coloration was measured for 111 individuals and genetic data were obtained from 220 individuals at two mitochondrial genes (mtDNA) and 7963 Single Nucleotide Polymorphisms (SNPs). Four color categories were described (brown, blue, yellow, orange) and our models of frog and bird visual systems indicated that each color was distinguishable for these taxa. Using outlier and correlative analyses we found no compelling genetic evidence for color being under divergent selection. A time-calibrated mtDNA tree suggests that the present distribution of dorsal coloration resulted from processes occurring during the Pleistocene. Separate phylogenies based on SNPs and mtDNA resolved the same well supported clades, each containing different colored populations. Ancestral character state analysis provided some evidence for evolutionary transitions in color type. Genetic structure was more strongly associated with geographic features, than color category, suggesting that the distribution of color is explained by localized processes. Evidence for geographic isolation together with estimates of low effective population size implicates drift as playing a key role in color diversification. Our results highlight the relevance of considering the neutral processes involved with the evolution of traits with important fitness consequences.
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Affiliation(s)
- Diana Rojas
- Programa de Pós-Graduação em Ecologia, Instituto Nacional de Pesquisas da Amazônia, Av. André Araújo 2936, P.O. Box 2223, Manaus, AM, 69011-970, Brazil
- Universidade Federal do Amazonas, Instituto de Natureza e Cultura, Rua 1º de Maio 05, Benjamin Constant, AM, 69630-000, Brazil
| | - Albertina P Lima
- Coordenação de Pesquisas em Biodiversidade, Instituto Nacional de Pesquisas da Amazônia, Av. André Araújo 2936, Manaus, AM, 69011-970, Brazil
| | - Paolo Momigliano
- Ecological Genetics Research Unit, Research Programme in Organismal and Evolutionary Biology, University of Helsinki, Helsinki, Finland
| | - Pedro Ivo Simões
- Coordenação de Pesquisas em Biodiversidade, Instituto Nacional de Pesquisas da Amazônia, Av. André Araújo 2936, Manaus, AM, 69011-970, Brazil
- Departamento de Zoologia, Centro de Biociências, Universidade Federal de Pernambuco, Av. Prof Moraes 1235, Recife, 50670-901, Brazil
| | - Rachael Y Dudaniec
- Department of Biological Sciences, Macquarie University, Balaclava Road, North Ryde, Sydney, NSW, 2109, Australia
| | | | - Marinus S Hoogmoed
- Museu Paraense Emilío Goeldi, Caixa Postal 399, Belém, PA, 66017-970, Brazil
| | - Youszef Oliveira da Cunha Bitar
- Programa de Pós-Graduação em Zoologia UFPA/Museu Paraense Emilio Goeldi, Universidade Federal do Pará, Instituto de Ciências Biológicas, Belém, PA, Brazil
| | - Igor L Kaefer
- Instituto de Ciências Biológicas, Universidade Federal do Amazonas, Av. Rodrigo Octávio 6200, Manaus, AM, 69077-000, Brazil
| | - Adolfo Amézquita
- Departamento de Ciencias Biológicas, Universidad de Los Andes, Bogotá, Colombia
| | - Adam Stow
- Department of Biological Sciences, Macquarie University, Balaclava Road, North Ryde, Sydney, NSW, 2109, Australia.
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10
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Gray LN, Barley AJ, Poe S, Thomson RC, Nieto‐Montes de Oca A, Wang IJ. Phylogeography of a widespread lizard complex reflects patterns of both geographic and ecological isolation. Mol Ecol 2019; 28:644-657. [DOI: 10.1111/mec.14970] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2017] [Revised: 10/24/2018] [Accepted: 11/05/2018] [Indexed: 01/18/2023]
Affiliation(s)
- Levi N. Gray
- Department of Biology and Museum of Southwestern Biology University of New Mexico Albuquerque New Mexico
| | - Anthony J. Barley
- Department of Biology University of Hawai’i at Mānoa Honolulu Hawaii
| | - Steven Poe
- Department of Biology and Museum of Southwestern Biology University of New Mexico Albuquerque New Mexico
| | - Robert C. Thomson
- Department of Biology University of Hawai’i at Mānoa Honolulu Hawaii
| | - Adrián Nieto‐Montes de Oca
- Departamento de Biología Evolutiva, Facultad de Ciencias Universidad Nacional Autónoma de México México México
| | - Ian J. Wang
- Department of Environmental Science, Policy, and Management University of California Berkeley California
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11
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Lam AW, Gueuning M, Kindler C, Van Dam M, Alvarez N, Panjaitan R, Shaverdo H, White LT, Roderick GK, Balke M. Phylogeography and population genomics of a lotic water beetle across a complex tropical landscape. Mol Ecol 2018; 27:3346-3356. [PMID: 30010208 DOI: 10.1111/mec.14796] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2017] [Revised: 06/06/2018] [Accepted: 06/11/2018] [Indexed: 11/30/2022]
Abstract
The habitat template concept applied to a freshwater system indicates that lotic species, or those which occupy permanent habitats along stream courses, are less dispersive than lentic species, or those that occur in more ephemeral aquatic habitats. Thus, populations of lotic species will be more structured than those of lentic species. Stream courses include both flowing water and small, stagnant microhabitats that can provide refuge when streams are low. Many species occur in these microhabitats but remain poorly studied. Here, we present population genetic data for one such species, the tropical diving beetle Exocelina manokwariensis (Dytiscidae), sampled from six localities along a ~300 km transect across the Birds Head Peninsula of New Guinea. Molecular data from both mitochondrial (CO1 sequences) and nuclear (ddRAD loci) regions document fine-scale population structure across populations that are ~45 km apart. Our results are concordant with previous phylogenetic and macroecological studies that applied the habitat template concept to aquatic systems. This study also illustrates that these diverse but mostly overlooked microhabitats are promising study systems in freshwater ecology and evolutionary biology. With the advent of next-generation sequencing, fine-scale population genomic studies are feasible for small nonmodel organisms to help illuminate the effect of habitat stability on species' natural history, population structure and geographic distribution.
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Affiliation(s)
- Athena Wai Lam
- SNSB-Zoologische Staatssammlung München, Munich, Germany
- Department of Environmental Science, Policy and Management, University of California, Berkeley, California
- Institute for Biodiversity Science and Sustainability, California Academy of Sciences, San Francisco, California
| | - Morgan Gueuning
- Department of Ecology and Evolution, Biophore, University of Lausanne, Lausanne, Switzerland
- Competence Division for Research Technology and Knowledge Exchange, Method Development and Analytics, Agroscope, Wädenswil, Switzerland
- Institute of Biology, University of Neuchatel, Neuchatel, Switzerland
| | | | - Matthew Van Dam
- SNSB-Zoologische Staatssammlung München, Munich, Germany
- Department of Environmental Science, Policy and Management, University of California, Berkeley, California
- Institute for Biodiversity Science and Sustainability, California Academy of Sciences, San Francisco, California
| | - Nadir Alvarez
- Department of Ecology and Evolution, Biophore, University of Lausanne, Lausanne, Switzerland
| | - Rawati Panjaitan
- Department of Biology, Faculty of Sciences and Mathematics, State University of Papua (UNIPA), Manokwari, West Papua, Indonesia
| | | | - Lloyd T White
- School of Earth and Environmental Sciences, University of Wollongong, New South Wales, Australia
| | - George K Roderick
- Department of Environmental Science, Policy and Management, University of California, Berkeley, California
| | - Michael Balke
- SNSB-Zoologische Staatssammlung München, Munich, Germany
- GeoBioCenter, Ludwig-Maximilians-Universität München, Munich, Germany
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12
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Schmidt-Lebuhn AN, Aitken NC, Chuah A. Species trees from consensus single nucleotide polymorphism (SNP) data: Testing phylogenetic approaches with simulated and empirical data. Mol Phylogenet Evol 2017; 116:192-201. [DOI: 10.1016/j.ympev.2017.07.018] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2016] [Revised: 02/21/2017] [Accepted: 07/22/2017] [Indexed: 12/21/2022]
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13
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Dealing with AFLP genotyping errors to reveal genetic structure in Plukenetia volubilis (Euphorbiaceae) in the Peruvian Amazon. PLoS One 2017; 12:e0184259. [PMID: 28910307 PMCID: PMC5598967 DOI: 10.1371/journal.pone.0184259] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2017] [Accepted: 08/20/2017] [Indexed: 12/04/2022] Open
Abstract
An analysis of the population structure and genetic diversity for any organism often depends on one or more molecular marker techniques. Nonetheless, these techniques are not absolutely reliable because of various sources of errors arising during the genotyping process. Thus, a complex analysis of genotyping error was carried out with the AFLP method in 169 samples of the oil seed plant Plukenetia volubilis L. from small isolated subpopulations in the Peruvian Amazon. Samples were collected in nine localities from the region of San Martin. Analysis was done in eight datasets with a genotyping error from 0 to 5%. Using eleven primer combinations, 102 to 275 markers were obtained according to the dataset. It was found that it is only possible to obtain the most reliable and robust results through a multiple-level filtering process. Genotyping error and software set up influence both the estimation of population structure and genetic diversity, where in our case population number (K) varied between 2–9 depending on the dataset and statistical method used. Surprisingly, discrepancies in K number were caused more by statistical approaches than by genotyping errors themselves. However, for estimation of genetic diversity, the degree of genotyping error was critical because descriptive parameters (He, FST, PLP 5%) varied substantially (by at least 25%). Due to low gene flow, P. volubilis mostly consists of small isolated subpopulations (ΦPT = 0.252–0.323) with some degree of admixture given by socio-economic connectivity among the sites; a direct link between the genetic and geographic distances was not confirmed. The study illustrates the successful application of AFLP to infer genetic structure in non-model plants.
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14
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15
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Curlis JD, Davis RW, Zetkulic E, Cox CL. Condition dependence of shared traits differs between sympatric Anolis lizards. JOURNAL OF EXPERIMENTAL ZOOLOGY PART 2017; 327:110-118. [PMID: 29356407 DOI: 10.1002/jez.2076] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/18/2017] [Revised: 04/13/2017] [Accepted: 05/04/2017] [Indexed: 11/11/2022]
Abstract
In many species, sexually selected combat and display traits can confer dramatic fitness benefits to males by aiding in mate acquisition, so individuals maximally invest energy into their growth and maintenance. Such traits are deemed condition-dependent, as the energy that is available for investment depends on the health and condition of the individual. Condition dependence is present in a wide range of traits across many taxa, but the extent to which condition dependence varies among shared traits in closely related species is poorly understood. We tested for condition dependence in two Anolis lizards, the ground anole (Anolis humilis) and the slender anole (Anolis limifrons). Specifically, we measured dewlap area, jaw length, jaw width, and sprint speed, and then regressed one of two indices of body condition on each of these traits for both species. We found that dewlap area and jaw width exhibited condition dependence in ground anoles, but not in slender anoles. Sprint speed and jaw length were not condition-dependent in either species. The presence of condition dependence in ground anoles, but not slender anoles, implies evolutionary liability in the condition dependence of shared traits. Additionally, the fact that condition dependence was only detected in ground anoles, which have a greater relative dewlap size, suggests a potential role for signal evolution or strength of sexual selection in the evolution of condition dependence. Finally, our research suggests that variation in condition dependence of sexually selected traits could have implications for the evolution of dewlap diversity among Anolis species.
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Affiliation(s)
- John David Curlis
- Department of Biology, Georgia Southern University, Statesboro, Georgia
| | | | | | - Christian L Cox
- Department of Biology, Georgia Southern University, Statesboro, Georgia
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16
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MacGuigan DJ, Geneva AJ, Glor RE. A genomic assessment of species boundaries and hybridization in a group of highly polymorphic anoles ( distichus species complex). Ecol Evol 2017; 7:3657-3671. [PMID: 28616163 PMCID: PMC5468153 DOI: 10.1002/ece3.2751] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2016] [Revised: 08/12/2016] [Accepted: 12/22/2016] [Indexed: 02/05/2023] Open
Abstract
Delimiting young species is one of the great challenges of systematic biology, particularly when the species in question exhibit little morphological divergence. Anolis distichus, a trunk anole with more than a dozen subspecies that are defined primarily by dewlap color, may actually represent several independent evolutionary lineages. To test this, we utilized amplified fragment length polymorphisms (AFLP) genome scans and genetic clustering analyses in conjunction with a coalescent‐based species delimitation method. We examined a geographically widespread set of samples and two heavily sampled hybrid zones. We find that genetic divergence is associated with a major biogeographic barrier, the Hispaniolan paleo‐island boundary, but not with dewlap color. Additionally, we find support for hypotheses regarding colonization of two Hispaniolan satellite islands and the Bahamas from mainland Hispaniola. Our results show that A. distichus is composed of seven distinct evolutionary lineages still experiencing a limited degree of gene flow. We suggest that A. distichus merits taxonomic revision, but that dewlap color cannot be relied upon as the primary diagnostic character.
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Affiliation(s)
- Daniel J MacGuigan
- Department of Ecology and Evolutionary Biology Yale University New Haven CT USA
| | - Anthony J Geneva
- Department of Organismic and Evolutionary Biology Harvard University Cambridge MA USA
| | - Richard E Glor
- Herpetology Division Biodiversity Institute University of Kansas Lawrence KS USA.,Department of Ecology and Evolutionary Biology University of Kansas Lawrence KS USA
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17
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Bryson RW, Savary WE, Zellmer AJ, Bury RB, McCormack JE. Genomic data reveal ancient microendemism in forest scorpions across the California Floristic Province. Mol Ecol 2016; 25:3731-51. [DOI: 10.1111/mec.13707] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2015] [Accepted: 05/03/2016] [Indexed: 01/16/2023]
Affiliation(s)
- Robert W. Bryson
- Department of Biology and Burke Museum of Natural History and Culture; University of Washington; Box 351800 Seattle WA 98195-1800 USA
| | - Warren E. Savary
- Department of Entomology; California Academy of Sciences; 55 Music Concourse Drive, Golden Gate Park San Francisco CA 94118 USA
| | - Amanda J. Zellmer
- Department of Biology; Occidental College; 1600 Campus Road Los Angeles CA 90041 USA
| | | | - John E. McCormack
- Department of Biology; Occidental College; 1600 Campus Road Los Angeles CA 90041 USA
- Moore Laboratory of Zoology; Occidental College; 1600 Campus Road Los Angeles CA 90041 USA
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18
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Laport RG, Minckley RL, Ramsey J. Ecological distributions, phenological isolation, and genetic structure in sympatric and parapatric populations of the Larrea tridentata polyploid complex. AMERICAN JOURNAL OF BOTANY 2016; 103:1358-1374. [PMID: 27440793 DOI: 10.3732/ajb.1600105] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/06/2016] [Accepted: 05/20/2016] [Indexed: 06/06/2023]
Abstract
PREMISE OF THE STUDY Polyploidy is widely recognized as a mechanism of diversification. Contributions of polyploidy to specific pre- and postzygotic barriers-and classifications of polyploid speciation as "ecological" vs. "non-ecological"-are more contentious. Evaluation of these issues requires comprehensive studies that test ecological characteristics of cytotypes as well as the coincidence of genetic structure with cytotype distributions. METHODS We investigated a classical example of autopolyploid speciation, Larrea tridentata, at multiple areas of cytotype co-occurrence. Habitat and phenological differences were compared between diploid, tetraploid, and hexaploid populations on the basis of edaphic, community composition, and flowering time surveys. Frequency of hybridization between diploids and tetraploids was investigated using a diploid-specific chloroplast DNA (cpDNA) marker; genetic structure for all cytotypes was assessed using amplified fragment length polymorphisms (AFLPs). KEY RESULTS Across contact zones, we found cytotypes in habitats distinguished by soil and vegetation. We observed modest differences in timing and production of flowers, indicating a degree of assortative mating that was asymmetric between cytotypes. Nonetheless, cpDNA analyses in diploid-tetraploid contact zones suggested that ∼5% of tetraploid plants had hybrid origins involving unilateral sexual polyploidization. Genetic structure of AFLPs largely coincided with cytotype distributions in diploid-tetraploid contact zones. In contrast, there was little structure in areas of contact between tetraploids and hexaploids, suggesting intercytotype gene flow or recurrent hexaploid formation. CONCLUSIONS Diploid, tetraploid, and hexaploid cytotypes of L. tridentata are segregated by environmental distributions and flowering phenology in contact zones, with diploid and tetraploid populations having corresponding differences in genetic structure.
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Affiliation(s)
- Robert G Laport
- University of Nebraska-Lincoln, School of Biological Sciences, Lincoln, Nebraska 68588 USA
| | - Robert L Minckley
- University of Rochester, Department of Biology, River Campus, Rochester, New York 14627 USA
| | - Justin Ramsey
- Black Hills State University, School of Natural Sciences, Spearfish, South Dakota 57799 USA
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19
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Clark DL, Macedonia JM, Gillingham JC, Rowe JW, Kane HJ, Valle CA. Why Does Conspecific Display Recognition Differ Among Species of Galápagos Lava Lizards? A Test Using Lizard Robots. HERPETOLOGICA 2016. [DOI: 10.1655/herpetologica-d-15-00040] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Affiliation(s)
- David L. Clark
- Department of Biology, Alma College, Alma, MI 48801, USA
| | | | - James C. Gillingham
- Department of Biology, Central Michigan University, Mt. Pleasant, MI 48859, USA
| | - John W. Rowe
- Department of Biology, Alma College, Alma, MI 48801, USA
| | | | - Carlos A. Valle
- Colegio de Ciencias Biológicas y Ambientales, Universidad San Francisco de Quito, Campus Cumbayá Av. Diego de Robles S/N e Interoceánica, Quito, Ecuador
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20
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Bacquet PMB, Brattström O, Wang HL, Allen CE, Löfstedt C, Brakefield PM, Nieberding CM. Selection on male sex pheromone composition contributes to butterfly reproductive isolation. Proc Biol Sci 2015; 282:20142734. [PMID: 25740889 DOI: 10.1098/rspb.2014.2734] [Citation(s) in RCA: 56] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023] Open
Abstract
Selection can facilitate diversification by inducing character displacement in mate choice traits that reduce the probability of maladaptive mating between lineages. Although reproductive character displacement (RCD) has been demonstrated in two-taxa case studies, the frequency of this process in nature is still debated. Moreover, studies have focused primarily on visual and acoustic traits, despite the fact that chemical communication is probably the most common means of species recognition. Here, we showed in a large, mostly sympatric, butterfly genus, a strong pattern of recurrent RCD for predicted male sex pheromone composition, but not for visual mate choice traits. Our results suggest that RCD is not anecdotal, and that selection for divergence in male sex pheromone composition contributed to reproductive isolation within the Bicyclus genus. We propose that selection may target olfactory mate choice traits as a more common sensory modality to ensure reproductive isolation among diverging lineages than previously envisaged.
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Affiliation(s)
- P M B Bacquet
- Evolutionary Ecology and Genetics Group, Biodiversity Research Centre, Earth and Life Institute, Université Catholique de Louvain, Croix du Sud 4-5, 1348 Louvain-la-Neuve, Belgium
| | - O Brattström
- Department of Zoology, University Museum of Zoology, University of Cambridge, Downing Street, Cambridge CB2 3EJ, UK
| | - H-L Wang
- Department of Biology, Pheromone Group, Lund University, SE-223 62 Lund, Sweden
| | - C E Allen
- Division of Biological Sciences, University of Montana, Missoula, MT 59812, USA
| | - C Löfstedt
- Department of Biology, Pheromone Group, Lund University, SE-223 62 Lund, Sweden
| | - P M Brakefield
- Department of Zoology, University Museum of Zoology, University of Cambridge, Downing Street, Cambridge CB2 3EJ, UK
| | - C M Nieberding
- Evolutionary Ecology and Genetics Group, Biodiversity Research Centre, Earth and Life Institute, Université Catholique de Louvain, Croix du Sud 4-5, 1348 Louvain-la-Neuve, Belgium
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21
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Ord TJ, Klomp DA, Garcia-Porta J, Hagman M. Repeated evolution of exaggerated dewlaps and other throat morphology in lizards. J Evol Biol 2015; 28:1948-64. [DOI: 10.1111/jeb.12709] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2015] [Revised: 07/15/2015] [Accepted: 07/29/2015] [Indexed: 01/16/2023]
Affiliation(s)
- T. J. Ord
- Evolution and Ecology Research Centre; School of Biological, Earth and Environmental Sciences; The University of New South Wales; Kensington NSW Australia
| | - D. A. Klomp
- Evolution and Ecology Research Centre; School of Biological, Earth and Environmental Sciences; The University of New South Wales; Kensington NSW Australia
| | - J. Garcia-Porta
- Institute of Evolutionary Biology (CSIC-Universitat Pompeu Fabra); Barcelona Spain
| | - M. Hagman
- Evolution and Ecology Research Centre; School of Biological, Earth and Environmental Sciences; The University of New South Wales; Kensington NSW Australia
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22
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Macedonia JM, Clark DL, Cherry LE, Mohamed NE, Bartel BW. Comparison of Headbob Displays in Gray-Dewlapped and Red-Dewlapped Populations of Green Anoles (Anolis carolinensis). HERPETOLOGICA 2015. [DOI: 10.1655/herpetologica-d-14-00045] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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23
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Geneva AJ, Hilton J, Noll S, Glor RE. Multilocus phylogenetic analyses of Hispaniolan and Bahamian trunk anoles (distichus species group). Mol Phylogenet Evol 2015; 87:105-17. [PMID: 25772800 DOI: 10.1016/j.ympev.2015.02.011] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2014] [Revised: 01/14/2015] [Accepted: 02/16/2015] [Indexed: 01/31/2023]
Abstract
The distichus species group includes six species and 21 subspecies of trunk ecomorph anoles distributed across Hispaniola and its satellite islands as well as the northern Bahamas. Although this group has long served as a model system for studies of reproductive character displacement, adaptation, behavior and speciation, it has never been the subject of a comprehensive phylogenetic analysis. Our goal here is to generate a multilocus phylogenetic dataset (one mitochondrial and seven nuclear loci) and to use this dataset to infer phylogenetic relationships among the majority of the taxa assigned to the distichus species group. We use these phylogenetic trees to address three topics about the group's evolution. First, we consider longstanding taxonomic controversies about the status of several species and subspecies assigned to the distichus species group. Second, we investigate the biogeographic history of the group and specifically test the hypotheses that historical division of Hispaniola into two paleo-islands contributed to the group's diversification and that Bahamian and Hispaniolan satellite island populations are derived from colonists from the main Hispaniolan landmass. Finally, third, we use comparative phylogenetic analyses to test the hypothesis that divergence between pale yellow and darkly pigmented orange or red dewlap coloration has occurred repeatedly across the distichus species group.
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Affiliation(s)
- Anthony J Geneva
- Department of Biology, University of Rochester, Rochester, NY 14627, United States.
| | - Jared Hilton
- Department of Biology, University of Rochester, Rochester, NY 14627, United States.
| | - Sabina Noll
- Department of Biology, University of Rochester, Rochester, NY 14627, United States.
| | - Richard E Glor
- Herpetology Division, Biodiversity Institute, University of Kansas, Lawrence, KS 66045, United States; Department of Ecology and Evolutionary Biology, University of Kansas, Lawrence, KS 66045, United States.
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24
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Rojas DP, Stow A, Amézquita A, Simões PI, Lima AP. No predatory bias with respect to colour familiarity for the aposematic Adelphobates galactonotus (Anura: Dendrobatidae). BEHAVIOUR 2015. [DOI: 10.1163/1568539x-00003297] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
Aposematic colouration deters visually oriented predators because conspicuous signals are easier to detect and associate with unpalatability. Consequently, brightly coloured prey that are novel are predicted to be preyed on more than those with bright but typical colours. Here we evaluated whether predatory bias is associated with the colour differences observed at two different localities for a large, conspicuously coloured and poisonous Amazonian frog, Adelphobates galactonotus. At each locality predation experiments were carried out using frog models of two naturally occurring colours of the study species (blue and orange) and a control (brown). We found no evidence that novel colours were more vulnerable to predation than local colours. These results do not therefore support our hypothesis that predatory bias explains the geographic variation of colour in A. galactonotus.
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Affiliation(s)
- Diana Patricia Rojas
- aCoordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia, P.O. Box 2223, 69011-970 Manaus, AM, Brazil
| | - Adam Stow
- bDepartment of Biological Sciences, Macquarie University, Sydney, NSW, Australia
| | - Adolfo Amézquita
- cDepartment of Biological Sciences, Universidad de los Andes, Bogotá, Colombia
| | - Pedro Ivo Simões
- aCoordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia, P.O. Box 2223, 69011-970 Manaus, AM, Brazil
- dLaboratório de Sistemática de Vertebrados, Pontificia Universidade Católica do Rio Grande do Sul, Porto Alegre, RS, Brazil
| | - Albertina Pimentel Lima
- aCoordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia, P.O. Box 2223, 69011-970 Manaus, AM, Brazil
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25
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Prates I, Rodrigues MT, Melo-Sampaio PR, Carnaval AC. Phylogenetic relationships of Amazonian anole lizards (Dactyloa): taxonomic implications, new insights about phenotypic evolution and the timing of diversification. Mol Phylogenet Evol 2014; 82 Pt A:258-68. [PMID: 25451806 DOI: 10.1016/j.ympev.2014.10.005] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2014] [Revised: 09/24/2014] [Accepted: 10/02/2014] [Indexed: 12/15/2022]
Abstract
The ecology and evolution of Caribbean anoles are well described, yet little is known about mainland anole species. Lack of phylogenetic information limits our knowledge about species boundaries, morphological evolution, and the biogeography of anoles in South America. To help fill this gap, we provide an updated molecular phylogeny of the Dactyloa (Dactyloidae), with emphasis on the punctata species group. By sampling understudied Amazonian taxa, we (i) assess the phylogenetic placement of the 'odd anole', D. dissimilis; (ii) infer the relationships of the proboscis-bearing D. phyllorhina, testing the hypothesis of independent nasal appendage evolution within the anole radiation; and (iii) examine genetic and dewlap color variation in D. punctata and D. philopunctata. Combining multiple nuclear loci with a review of the fossil record, we also (iv) estimate divergence times within the pleurodont iguanian clade of lizards, including Amazonian representatives of Dactyloa and Norops (Dactyloidae) and of Polychrus (Polychrotidae). We recover the five Dactyloa clades previously referred to as the aequatorialis, heteroderma, latifrons, punctata and roquet species groups, as well as a sixth clade composed of D. dissimilis and the non-Amazonian D. neblinina and D. calimae. We find D. phyllorhina to be nested within the punctata group, suggesting independent evolution of the anole proboscis. We consistently recover D. philopunctata nested within D. punctata, and report limited genetic divergence between distinct dewlap phenotypes. The most recent common ancestor of Dactyloa, Anolis and Norops dates back to the Eocene. Most Amazonian taxa within both Dactyloa and Norops diverged in the Miocene, but some diversification events were as old as the late Eocene and late Oligocene. Amazonian Polychrus diverged in the Pliocene. Our findings have broad implications for anole biogeography, disputing recent suggestions that modern dactyloid genera were present in the Caribbean region during the Cretaceous.
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Affiliation(s)
- Ivan Prates
- Department of Biology, City College of New York, New York, NY, USA; Graduate Center, City University of New York, New York, NY, USA.
| | - Miguel Trefaut Rodrigues
- Departamento de Zoologia, Instituto de Biociências, Universidade de São Paulo, São Paulo, SP, Brazil.
| | - Paulo Roberto Melo-Sampaio
- Programa de Pós-graduação em Ecologia e Manejo de Recursos Naturais and Laboratório de Herpetologia, Universidade Federal do Acre, Rio Branco, AC, Brazil; União Educacional do Norte, Rio Branco, AC, Brazil.
| | - Ana Carolina Carnaval
- Department of Biology, City College of New York, New York, NY, USA; Graduate Center, City University of New York, New York, NY, USA.
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Abstract
Coevolution, reciprocal adaptation between two or more taxa, is commonly invoked as a primary mechanism responsible for generating much of Earth's biodiversity. This conceptually appealing hypothesis is incredibly broad in evolutionary scope, encompassing diverse patterns and processes operating over timescales ranging from microbial generations to geological eras. However, we have surprisingly little evidence that large-scale associations between coevolution and diversity reflect a causal relationship at smaller timescales, in which coevolutionary selection is directly responsible for the formation of new species. In this synthesis, we critically evaluate evidence for the often-invoked hypothesis that coevolution is an important process promoting biological diversification. We conclude that the lack of widespread evidence for coevolutionary diversification may be best explained by the fact that coevolution's importance in diversification varies depending on the type of interaction and the scale of the diversification under consideration.
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Affiliation(s)
- David H Hembry
- Department of Environmental Science, Policy, and Management, University of California, Berkeley, California 94720
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27
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Rieseberg L, Vines T, Gow J, Kane N. Molecular Ecology continues to perform well according to the major publication metrics. Introduction. Mol Ecol 2014; 23:1-15. [PMID: 24372750 DOI: 10.1111/mec.12586] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2013] [Accepted: 11/06/2013] [Indexed: 11/28/2022]
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28
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Ng J, Kelly AL, MacGuigan DJ, Glor RE. The role of heritable and dietary factors in the sexual signal of a Hispaniolan Anolis lizard, Anolis distichus. ACTA ACUST UNITED AC 2013; 104:862-73. [PMID: 24078680 DOI: 10.1093/jhered/est060] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Abstract
The diversity of sexual signals is astounding, and divergence in these traits is believed to be associated with the early stages of speciation. An increasing number of studies also suggest a role for natural selection in driving signal divergence for effective transmission in heterogeneous environments. Both speciation and adaptive divergence, however, are contingent on the sexual signal being heritable, yet this often remains assumed and untested. It is particularly critical that the heritability of carotenoid-based sexual signals is investigated because such traits may instead be phenotypically plastic indicators of an individual's quality that exhibit no or little heritable variation. We present the first study to investigate the relative contribution of genetic and environmental factors to the striking diversity of dewlap color and pattern in Anolis lizards. Using a breeding experiment with Anolis distichus populations exhibiting different dewlap phenotypes, we raise F1 offspring in a common garden experiment to assess whether dewlap color is inherited. We follow this with carotenoid supplementation to investigate the influence of dietary pigments to dewlap color variation. We find significant differences in several aspects of dewlap color and pattern to persist to the F1 generation (fathers: N = 19; F1 males: N = 50; P < 0.01) with no change in dewlap phenotype with carotenoid supplementation (N = 52; P > 0.05). These results strongly support that genetic differences underlie dewlap color variation, thereby satisfying a key requirement of natural selection. Our findings provide an important stepping-stone to understanding the evolution of an incredibly diverse signal important for sexual selection and species recognition.
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Affiliation(s)
- Julienne Ng
- the Department of Biology, University of Rochester, RC Box 270211, Rochester, NY 14627. Richard Glor is now at the Biodiversity Institute and Department of Ecology and Evolutionary Biology, University of Kansas, Lawrence, KS
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Affiliation(s)
- Jonathan B. Losos
- Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology; Harvard University; 26 Oxford Street Cambridge MA 02138 USA
| | - Manuel Leal
- Department of Biology; Duke University; Durham NC 27708 USA
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