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Gegenfurtner KR, Weiss D, Bloj M. Color constancy in real-world settings. J Vis 2024; 24:12. [PMID: 38411957 PMCID: PMC10910556 DOI: 10.1167/jov.24.2.12] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2023] [Accepted: 12/12/2023] [Indexed: 02/28/2024] Open
Abstract
Color constancy denotes the ability to assign a particular and stable color percept to an object, irrespective of its surroundings and illumination. The light reaching the eye confounds illumination and spectral reflectance of the object, making the recovery of constant object color an ill-posed problem. How good the visual system is at accomplishing this task is still a matter of heated debate, despite more than a 100 years of research. Depending on the laboratory task and the specific cues available to observers, color constancy was found to be at levels ranging between 15% and 80%, which seems incompatible with the relatively stable color appearance of objects around us and the consistent usage of color names in real life. Here, we show close-to-perfect color constancy using real objects in a natural task and natural environmental conditions, chosen to mimic the role of color constancy in everyday life. Participants had to identify the color of a (non-present) item familiar to them in an office room under five different experimental illuminations. They mostly selected the same colored Munsell chip as their match to the absent object, even though the light reaching the eye in each case differed substantially. Our results demonstrate that color constancy under ideal conditions in the real world can indeed be exceptionally good. We found it to be as good as visual memory permits and not generally compromised by sensory uncertainty.
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Affiliation(s)
- Karl R Gegenfurtner
- Department of Psychology, Giessen University, Giessen, Germany
- https://www.allpsych.uni-giessen.de/karl/
| | - David Weiss
- Department of Psychology, Giessen University, Giessen, Germany
| | - Marina Bloj
- Faculty of Health Studies, University of Bradford, Bradford, UK
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2
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Morimoto T, Zhang C, Fukuda K, Uchikawa K. Spectral measurement of daylights and surface properties of natural objects in Japan. OPTICS EXPRESS 2022; 30:3183. [PMID: 35106053 PMCID: PMC7612288 DOI: 10.1364/oe.441063] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/20/2021] [Revised: 10/22/2021] [Accepted: 11/13/2021] [Indexed: 06/14/2023]
Abstract
We present a spectral dataset of daylights and surface reflectances and transmittances of natural objects measured in Japan. Daylights were measured under the sun and under shadow from dawn to dusk on four different days to capture their temporal spectral transition. We separately measured daylight spectra at five different locations (including an open space and a forest) with minimum time difference to reveal whether a local environment alters daylight spectra reaching the ground. We found that colors of natural objects were spread in a limited area of color space, and data points were absent around saturated green regions. Daylight spectra were found to have a larger variation across time, weather, and local environments than previously thought. Datasets are made freely available, expanding past public datasets mainly collected in Northern America and Europe.
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Affiliation(s)
- Takuma Morimoto
- Department of Experimental Psychology, University of Oxford, Oxford, UK
- Department of General Psychology, Justus-Liebig-Universität Gießen, Gießen, Germany
| | - Cong Zhang
- Department of Information Processing, Tokyo Institute of Technology, Yokohama, Japan
| | - Kazuho Fukuda
- Department of Information Design, Kogakuin University, Tokyo, Japan
| | - Keiji Uchikawa
- Department of Information Processing, Tokyo Institute of Technology, Yokohama, Japan
- Human Media Research Center, Kanagawa Institute of Technology, Atsugi, Japan
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3
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Matsumoto Y, Oda S, Mitani H, Kawamura S. Orthologous Divergence and Paralogous Anticonvergence in Molecular Evolution of Triplicated Green Opsin Genes in Medaka Fish, Genus Oryzias. Genome Biol Evol 2021; 12:911-923. [PMID: 32467976 PMCID: PMC7337190 DOI: 10.1093/gbe/evaa111] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/25/2020] [Indexed: 11/30/2022] Open
Abstract
Gene duplication of green (RH2) opsin genes and their spectral differentiation are well documented in many teleost fish. However, their evolutionary divergence or conservation patterns among phylogenetically close but ecologically diverse species is not well explored. Medaka fish (genus Oryzias) are broadly distributed in fresh and brackish waters of Asia, with many species being laboratory-housed and feasible for genetic studies. We previously showed that a Japan strain (HNI) of medaka (Oryzias latipes) possessed three RH2 opsin genes (RH2-A, RH2-B, and RH2-C) encoding spectrally divergent photopigments. Here, we examined the three RH2 opsin genes from six Oryzias species representing three species groups: the latipes, the celebensis, and the javanicus. Photopigment reconstitution revealed that the peak absorption spectra (λmax) of RH2-A were divergent among the species (447–469 nm), whereas those of RH2-B and RH2-C were conservative (516–519 and 486–493 nm, respectively). For the RH2-A opsins, the largest spectral shift was detected in the phylogenetic branch leading to the latipes group. A single amino acid replacement T94C explained most of the spectral shift. For RH2-B and -C opsins, we detected tracts of gene conversion between the two genes homogenizing them. Nevertheless, several amino acid differences were maintained. We showed that the spectral difference between the two opsins was attributed to largely the E/Q amino acid difference at the site 122 and to several sites with individually small spectral effects. These results depict dynamism of spectral divergence of orthologous and paralogous green opsin genes in phylogenetically close but ecologically diverse species exemplified by medaka.
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Affiliation(s)
- Yoshifumi Matsumoto
- Department of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Chiba, Japan.,Live Imaging Center, Central Institute for Experimental Animals (CIEA), Kawasaki, Kanagawa, Japan
| | - Shoji Oda
- Department of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Chiba, Japan
| | - Hiroshi Mitani
- Department of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Chiba, Japan
| | - Shoji Kawamura
- Department of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Chiba, Japan
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4
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Veilleux CC, Kawamura S, Montague MJ, Hiwatashi T, Matsushita Y, Fernandez‐Duque E, Link A, Di Fiore A, Snodderly DM. Color vision and niche partitioning in a diverse neotropical primate community in lowland Amazonian Ecuador. Ecol Evol 2021; 11:5742-5758. [PMID: 34026044 PMCID: PMC8131790 DOI: 10.1002/ece3.7479] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2020] [Revised: 03/02/2021] [Accepted: 03/05/2021] [Indexed: 01/05/2023] Open
Abstract
A recent focus in community ecology has been on how within-species variability shapes interspecific niche partitioning. Primate color vision offers a rich system in which to explore this issue. Most neotropical primates exhibit intraspecific variation in color vision due to allelic variation at the middle-to-long-wavelength opsin gene on the X chromosome. Studies of opsin polymorphisms have typically sampled primates from different sites, limiting the ability to relate this genetic diversity to niche partitioning. We surveyed genetic variation in color vision of five primate species, belonging to all three families of the primate infraorder Platyrrhini, found in the Yasuní Biosphere Reserve in Ecuador. The frugivorous spider monkeys and woolly monkeys (Ateles belzebuth and Lagothrix lagotricha poeppigii, family Atelidae) each had two opsin alleles, and more than 75% of individuals carried the longest-wavelength (553-556 nm) allele. Among the other species, Saimiri sciureus macrodon (family Cebidae) and Pithecia aequatorialis (family Pitheciidae) had three alleles, while Plecturocebus discolor (family Pitheciidae) had four alleles-the largest number yet identified in a wild population of titi monkeys. For all three non-atelid species, the middle-wavelength (545 nm) allele was the most common. Overall, we identified genetic evidence of fourteen different visual phenotypes-seven types of dichromats and seven trichromats-among the five sympatric taxa. The differences we found suggest that interspecific competition among primates may influence intraspecific frequencies of opsin alleles. The diversity we describe invites detailed study of foraging behavior of different vision phenotypes to learn how they may contribute to niche partitioning.
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Affiliation(s)
- Carrie C. Veilleux
- Department of Anthropology and Primate Molecular Ecology and Evolution LaboratoryUniversity of Texas at AustinAustinTXUSA
- Department of AnatomyMidwestern UniversityGlendaleAZUSA
| | - Shoji Kawamura
- Department of Integrated BiosciencesUniversity of TokyoKashiwaJapan
| | | | | | - Yuka Matsushita
- Department of Integrated BiosciencesUniversity of TokyoKashiwaJapan
| | - Eduardo Fernandez‐Duque
- Department of Anthropology and School of the EnvironmentYale UniversityNew HavenCTUSA
- College of Biological and Environmental SciencesUniversidad San Francisco de QuitoCumbayáEcuador
| | - Andres Link
- College of Biological and Environmental SciencesUniversidad San Francisco de QuitoCumbayáEcuador
- Department of Biological SciencesUniversidad de Los AndesBogotaColombia
| | - Anthony Di Fiore
- Department of Anthropology and Primate Molecular Ecology and Evolution LaboratoryUniversity of Texas at AustinAustinTXUSA
- College of Biological and Environmental SciencesUniversidad San Francisco de QuitoCumbayáEcuador
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5
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Patel D, Barnes JE, Davies WIL, Stenkamp DL, Patel JS. Short-wavelength-sensitive 2 (Sws2) visual photopigment models combined with atomistic molecular simulations to predict spectral peaks of absorbance. PLoS Comput Biol 2020; 16:e1008212. [PMID: 33085657 PMCID: PMC7605715 DOI: 10.1371/journal.pcbi.1008212] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2020] [Revised: 11/02/2020] [Accepted: 09/21/2020] [Indexed: 12/02/2022] Open
Abstract
For many species, vision is one of the most important sensory modalities for mediating essential tasks that include navigation, predation and foraging, predator avoidance, and numerous social behaviors. The vertebrate visual process begins when photons of the light interact with rod and cone photoreceptors that are present in the neural retina. Vertebrate visual photopigments are housed within these photoreceptor cells and are sensitive to a wide range of wavelengths that peak within the light spectrum, the latter of which is a function of the type of chromophore used and how it interacts with specific amino acid residues found within the opsin protein sequence. Minor differences in the amino acid sequences of the opsins are known to lead to large differences in the spectral peak of absorbance (i.e. the λmax value). In our prior studies, we developed a new approach that combined homology modeling and molecular dynamics simulations to gather structural information associated with chromophore conformation, then used it to generate statistical models for the accurate prediction of λmax values for photopigments derived from Rh1 and Rh2 amino acid sequences. In the present study, we test our novel approach to predict the λmax of phylogenetically distant Sws2 cone opsins. To build a model that can predict the λmax using our approach presented in our prior studies, we selected a spectrally-diverse set of 11 teleost Sws2 photopigments for which both amino acid sequence information and experimentally measured λmax values are known. The final first-order regression model, consisting of three terms associated with chromophore conformation, was sufficient to predict the λmax of Sws2 photopigments with high accuracy. This study further highlights the breadth of our approach in reliably predicting λmax values of Sws2 cone photopigments, evolutionary-more distant from template bovine RH1, and provided mechanistic insights into the role of known spectral tuning sites.
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Affiliation(s)
- Dharmeshkumar Patel
- Institute for Modeling Collaboration and Innovation (IMCI), University of Idaho, Moscow, ID, United States of America
| | - Jonathan E. Barnes
- Department of Physics, University of Idaho, Moscow, ID, United States of America
| | - Wayne I. L. Davies
- Umeå Centre for Molecular Medicine (UCMM), Umeå University, Umeå, Sweden
- School of Biological Sciences, University of Western Australia, Perth, WA, Australia
- The Oceans Graduate School, University of Western Australia, Perth, WA, Australia
- The Oceans Institute, University of Western Australia, Perth, WA, Australia
- Lions Eye Institute, University of Western Australia, Perth, WA, Australia
| | - Deborah L. Stenkamp
- Department of Biological Sciences, University of Idaho, Moscow, ID, United States of America
- Institute for Bioinformatics and Evolutionary Biology, University of Idaho, Moscow, ID, United States of America
| | - Jagdish Suresh Patel
- Institute for Modeling Collaboration and Innovation (IMCI), University of Idaho, Moscow, ID, United States of America
- Department of Biological Sciences, University of Idaho, Moscow, ID, United States of America
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6
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Grogan KE, Perry GH. Studying human and nonhuman primate evolutionary biology with powerful in vitro and in vivo functional genomics tools. Evol Anthropol 2020; 29:143-158. [PMID: 32142200 PMCID: PMC10574139 DOI: 10.1002/evan.21825] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2019] [Revised: 09/18/2019] [Accepted: 02/06/2020] [Indexed: 12/19/2022]
Abstract
In recent years, tools for functional genomic studies have become increasingly feasible for use by evolutionary anthropologists. In this review, we provide brief overviews of several exciting in vitro techniques that can be paired with "-omics" approaches (e.g., genomics, epigenomics, transcriptomics, proteomics, and metabolomics) for potentially powerful evolutionary insights. These in vitro techniques include ancestral protein resurrection, cell line experiments using primary, immortalized, and induced pluripotent stem cells, and CRISPR-Cas9 genetic manipulation. We also discuss how several of these methods can be used in vivo, for transgenic organism studies of human and nonhuman primate evolution. Throughout this review, we highlight example studies in which these approaches have already been used to inform our understanding of the evolutionary biology of modern and archaic humans and other primates while simultaneously identifying future opportunities for anthropologists to use this toolkit to help answer additional outstanding questions in evolutionary anthropology.
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Affiliation(s)
- Kathleen E. Grogan
- Department of Anthropology, Pennsylvania State University, University Park, PA 16802
- Department of Biology, Pennsylvania State University, University Park, PA 16802
| | - George H. Perry
- Department of Anthropology, Pennsylvania State University, University Park, PA 16802
- Department of Biology, Pennsylvania State University, University Park, PA 16802
- Huck Institutes of the Life Sciences, Pennsylvania State University, University Park, PA 16802
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7
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Convergent spectral shifts to blue-green vision in mammals extends the known sensitivity of vertebrate M/LWS pigments. Proc Natl Acad Sci U S A 2020; 117:8303-8305. [PMID: 32241894 PMCID: PMC7165416 DOI: 10.1073/pnas.2002235117] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Daylight vision in most mammals is mediated predominantly by a middle/long wavelength-sensitive (M/LWS) pigment. Although spectral sensitivity and associated shifts in M/LWS are mainly determined by five critical sites, predicted phenotypic variation is rarely validated, and its ecological significance is unclear. We experimentally determine spectral tuning of M/LWS pigments and show that two highly divergent taxa, the gerbil and the elephant-shrew, have undergone independent dramatic blue-green shifts to 490 nm. By generating mutant proteins, we identify additional critical sites contributing to these shifts. Our results, which extend the known range of spectral tuning of vertebrate M/LWS, provide a compelling case of functional convergence, likely related to parallel adaptive shifts from nocturnal to brighter light conditions in similar habitats.
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8
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Abstract
Vertebrate color vision requires spectrally selective opsin-based pigments, expressed in distinct cone photoreceptor populations. In primates and in fish, spectrally divergent opsin genes may reside in head-to-tail tandem arrays. Mechanisms underlying differential expression from such arrays have not been fully elucidated. Regulation of human red (LWS) vs. green (MWS) opsins is considered a stochastic event, whereby upstream enhancers associate randomly with promoters of the proximal or distal gene, and one of these associations becomes permanent. We demonstrate that, distinct from this stochastic model, the endocrine signal thyroid hormone (TH) regulates differential expression of the orthologous zebrafish lws1/lws2 array, and of the tandemly quadruplicated rh2-1/rh2-2/rh2-3/rh2-4 array. TH treatment caused dramatic, dose-dependent increases in abundance of lws1, the proximal member of the lws array, and reduced lws2 Fluorescent lws reporters permitted direct visualization of individual cones switching expression from lws2 to lws1 Athyroidism increased lws2 and reduced lws1, except within a small ventral domain of lws1 that was likely sustained by retinoic acid signaling. Changes in lws abundance and distribution in athyroid zebrafish were rescued by TH, demonstrating plasticity of cone phenotype in response to this signal. TH manipulations also regulated the rh2 array, with athyroidism reducing abundance of distal members. Interestingly, the opsins encoded by the proximal lws gene and distal rh2 genes are sensitive to longer wavelengths than other members of their respective arrays; therefore, endogenous TH acts upon each opsin array to shift overall spectral sensitivity toward longer wavelengths, underlying coordinated changes in visual system function during development and growth.
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10
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Simões BF, Foley NM, Hughes GM, Zhao H, Zhang S, Rossiter SJ, Teeling EC. As Blind as a Bat? Opsin Phylogenetics Illuminates the Evolution of Color Vision in Bats. Mol Biol Evol 2019; 36:54-68. [PMID: 30476197 PMCID: PMC6340466 DOI: 10.1093/molbev/msy192] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022] Open
Abstract
Through their unique use of sophisticated laryngeal echolocation bats are considered sensory specialists amongst mammals and represent an excellent model in which to explore sensory perception. Although several studies have shown that the evolution of vision is linked to ecological niche adaptation in other mammalian lineages, this has not yet been fully explored in bats. Recent molecular analysis of the opsin genes, which encode the photosensitive pigments underpinning color vision, have implicated high-duty cycle (HDC) echolocation and the adoption of cave roosting habits in the degeneration of color vision in bats. However, insufficient sampling of relevant taxa has hindered definitive testing of these hypotheses. To address this, novel sequence data was generated for the SWS1 and MWS/LWS opsin genes and combined with existing data to comprehensively sample species representing diverse echolocation types and niches (SWS1 n = 115; MWS/LWS n = 45). A combination of phylogenetic analysis, ancestral state reconstruction, and selective pressure analyses were used to reconstruct the evolution of these visual pigments in bats and revealed that although both genes are evolving under purifying selection in bats, MWS/LWS is highly conserved but SWS1 is highly variable. Spectral tuning analyses revealed that MWS/LWS opsin is tuned to a long wavelength, 555-560 nm in the bat ancestor and the majority of extant taxa. The presence of UV vision in bats is supported by our spectral tuning analysis, but phylogenetic analyses demonstrated that the SWS1 opsin gene has undergone pseudogenization in several lineages. We do not find support for a link between the evolution of HDC echolocation and the pseudogenization of the SWS1 gene in bats, instead we show the SWS1 opsin is functional in the HDC echolocator, Pteronotus parnellii. Pseudogenization of the SWS1 is correlated with cave roosting habits in the majority of pteropodid species. Together these results demonstrate that the loss of UV vision in bats is more widespread than was previously considered and further elucidate the role of ecological niche specialization in the evolution of vision in bats.
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Affiliation(s)
- Bruno F Simões
- UCD School of Biology and Environmental Science, University College Dublin, Dublin 4, Ireland
- School of Earth Science, University of Bristol, Bristol, United Kingdom
- School of Biological Science, The University of Adelaide, South Australia, Australia
| | - Nicole M Foley
- UCD School of Biology and Environmental Science, University College Dublin, Dublin 4, Ireland
| | - Graham M Hughes
- UCD School of Biology and Environmental Science, University College Dublin, Dublin 4, Ireland
| | - Huabin Zhao
- Department of Ecology and Hubei Key Laboratory of Cell Homeostasis, College of Life Sciences, Wuhan University, Wuhan 430072, China
| | - Shuyi Zhang
- College of Animal Science and Veterinary Medicine, Shenyang Agricultural University, Shenyang, China
| | - Stephen J Rossiter
- School of Biological and Chemical Sciences, Queen Mary University of London, London, United Kingdom
| | - Emma C Teeling
- UCD School of Biology and Environmental Science, University College Dublin, Dublin 4, Ireland
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11
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Akbarinia A, Gegenfurtner KR. Color metamerism and the structure of illuminant space. JOURNAL OF THE OPTICAL SOCIETY OF AMERICA. A, OPTICS, IMAGE SCIENCE, AND VISION 2018; 35:B231-B238. [PMID: 29603980 DOI: 10.1364/josaa.35.00b231] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/23/2017] [Accepted: 02/16/2018] [Indexed: 06/08/2023]
Abstract
The colors of two surfaces might appear exactly alike under one illuminant while varying under others. This is due to the metamerism phenomenon in which physically distinct reflectance spectra result in identical cone photoreceptor excitations. The existence of such metameric pairs can potentially cause great ambiguities for our visual perception by challenging phenomena such as color constancy. We investigated frequency and magnitude of metamerism in a wide range of scenarios by studying a large set of surface reflectance spectra illuminated under numerous natural and artificial sources of light. Our results extend previous studies in the literature by demonstrating that metamers are indeed relatively infrequent. Potentially troublesome cases in which two surfaces with an identical color under one illuminant appear very differently under a second illuminant are exceedingly rare. We used the frequency of metameric pairs in combination with non-metric multidimensional scaling to establish a new representation of illuminants based on metamerism. This approach imposes a systematic structure onto the representation of illuminants and allows to better prognosticate the likelihood of metamers under new illuminants.
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12
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13
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Jacobs RL, MacFie TS, Spriggs AN, Baden AL, Morelli TL, Irwin MT, Lawler RR, Pastorini J, Mayor M, Lei R, Culligan R, Hawkins MTR, Kappeler PM, Wright PC, Louis EE, Mundy NI, Bradley BJ. Novel opsin gene variation in large-bodied, diurnal lemurs. Biol Lett 2017; 13:rsbl.2017.0050. [PMID: 28275167 DOI: 10.1098/rsbl.2017.0050] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2017] [Accepted: 02/15/2017] [Indexed: 01/16/2023] Open
Abstract
Some primate populations include both trichromatic and dichromatic (red-green colour blind) individuals due to allelic variation at the X-linked opsin locus. This polymorphic trichromacy is well described in day-active New World monkeys. Less is known about colour vision in Malagasy lemurs, but, unlike New World monkeys, only some day-active lemurs are polymorphic, while others are dichromatic. The evolutionary pressures underlying these differences in lemurs are unknown, but aspects of species ecology, including variation in activity pattern, are hypothesized to play a role. Limited data on X-linked opsin variation in lemurs make such hypotheses difficult to evaluate. We provide the first detailed examination of X-linked opsin variation across a lemur clade (Indriidae). We sequenced the X-linked opsin in the most strictly diurnal and largest extant lemur, Indri indri, and nine species of smaller, generally diurnal indriids (Propithecus). Although nocturnal Avahi (sister taxon to Propithecus) lacks a polymorphism, at least eight species of diurnal indriids have two or more X-linked opsin alleles. Four rainforest-living taxa-I. indri and the three largest Propithecus species-have alleles not previously documented in lemurs. Moreover, we identified at least three opsin alleles in Indri with peak spectral sensitivities similar to some New World monkeys.
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Affiliation(s)
- Rachel L Jacobs
- Center for the Advanced Study of Human Paleobiology, Department of Anthropology, The George Washington University, Washington, DC 20052, USA .,Centre ValBio Research Station, Ranomafana, Fianarantsoa, Madagascar
| | - Tammie S MacFie
- Department of Zoology, University of Cambridge, Cambridge, UK
| | - Amanda N Spriggs
- Center for the Advanced Study of Human Paleobiology, Department of Anthropology, The George Washington University, Washington, DC 20052, USA.,Department of Anthropology, University at Albany-SUNY, Albany, NY 12222, USA
| | - Andrea L Baden
- Centre ValBio Research Station, Ranomafana, Fianarantsoa, Madagascar.,Department of Anthropology, Hunter College-CUNY, and The New York Consortium in Evolutionary Primatology (NYCEP), New York, NY 10065, USA
| | - Toni Lyn Morelli
- Centre ValBio Research Station, Ranomafana, Fianarantsoa, Madagascar.,Department of Environmental Conservation, University of Massachusetts, Amherst, MA 01003, USA
| | - Mitchell T Irwin
- Department of Anthropology, Northern Illinois University, DeKalb, IL 60115, USA
| | - Richard R Lawler
- Department of Sociology and Anthropology, James Madison University, Harrisonburg, VA 22807, USA
| | - Jennifer Pastorini
- Anthropologisches Institut, Universität Zürich, Winterthurerstrasse 190, 8057 Zürich, Switzerland
| | - Mireya Mayor
- Centre ValBio Research Station, Ranomafana, Fianarantsoa, Madagascar
| | - Runhua Lei
- Conservation Genetics Department, Omaha's Henry Doorly Zoo and Aquarium, Omaha, NE 68107, USA
| | - Ryan Culligan
- Conservation Genetics Department, Omaha's Henry Doorly Zoo and Aquarium, Omaha, NE 68107, USA
| | - Melissa T R Hawkins
- Conservation Genetics Department, Omaha's Henry Doorly Zoo and Aquarium, Omaha, NE 68107, USA
| | - Peter M Kappeler
- Behavioural Ecology and Sociobiology Unit, German Primate Center, Kellnerweg 4, Göttingen 37077, Germany
| | - Patricia C Wright
- Centre ValBio Research Station, Ranomafana, Fianarantsoa, Madagascar.,Department of Anthropology, Stony Brook University, Stony Brook, NY 11794, USA
| | - Edward E Louis
- Conservation Genetics Department, Omaha's Henry Doorly Zoo and Aquarium, Omaha, NE 68107, USA
| | | | - Brenda J Bradley
- Center for the Advanced Study of Human Paleobiology, Department of Anthropology, The George Washington University, Washington, DC 20052, USA
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14
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Goulart VDLR, Boubli JP, Young RJ. Medium/Long wavelength sensitive opsin diversity in Pitheciidae. Sci Rep 2017; 7:7737. [PMID: 28798406 PMCID: PMC5552705 DOI: 10.1038/s41598-017-08143-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2017] [Accepted: 07/05/2017] [Indexed: 11/09/2022] Open
Abstract
New World primates feature a complex colour vision system. Most species have polymorphic colour vision where males have a dichromatic colour perception and females can be either dichromatic or trichromatic. The adaptive value of high allelic diversity of opsins, a light sensitive protein, found in primates' eyes remains unknown. Studies revealing the allelic diversity are important as they shed light on our understanding of the adaptive value of differences in the colouration of species and their ecologies. Here we investigate the allelic types found in Pitheciidae, an understudied New World primate family, revealing the diversity of medium/long wavelength sensitive opsins both in cryptic and conspicuous species of this primate family. We found five alleles in Cacajao, six in Callicebinae (i.e. Plecturocebus, Cheracebus, and Callicebus), four in Chiropotes, and three in Pithecia, some of them reported for the first time. Both cryptic and conspicuous species in this group presented high allelic diversity.
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Affiliation(s)
- Vinicius D L R Goulart
- CAPES Foundation, Ministry of Education of Brazil, Brasília, DF, 70040-020, Brazil.
- School of Environment and Life Sciences, Peel Building, University of Salford Manchester, Salford, M5 4WT, UK.
| | - Jean P Boubli
- School of Environment and Life Sciences, Peel Building, University of Salford Manchester, Salford, M5 4WT, UK
| | - Robert J Young
- School of Environment and Life Sciences, Peel Building, University of Salford Manchester, Salford, M5 4WT, UK
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15
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Ishengoma E, Agaba M, Cavener DR. Evolutionary analysis of vision genes identifies potential drivers of visual differences between giraffe and okapi. PeerJ 2017; 5:e3145. [PMID: 28396824 PMCID: PMC5385128 DOI: 10.7717/peerj.3145] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2016] [Accepted: 03/04/2017] [Indexed: 12/20/2022] Open
Abstract
Background The capacity of visually oriented species to perceive and respond to visual signal is integral to their evolutionary success. Giraffes are closely related to okapi, but the two species have broad range of phenotypic differences including their visual capacities. Vision studies rank giraffe’s visual acuity higher than all other artiodactyls despite sharing similar vision ecological determinants with many of them. The extent to which the giraffe’s unique visual capacity and its difference with okapi is reflected by changes in their vision genes is not understood. Methods The recent availability of giraffe and okapi genomes provided opportunity to identify giraffe and okapi vision genes. Multiple strategies were employed to identify thirty-six candidate mammalian vision genes in giraffe and okapi genomes. Quantification of selection pressure was performed by a combination of branch-site tests of positive selection and clade models of selection divergence through comparing giraffe and okapi vision genes and orthologous sequences from other mammals. Results Signatures of selection were identified in key genes that could potentially underlie giraffe and okapi visual adaptations. Importantly, some genes that contribute to optical transparency of the eye and those that are critical in light signaling pathway were found to show signatures of adaptive evolution or selection divergence. Comparison between giraffe and other ruminants identifies significant selection divergence in CRYAA and OPN1LW. Significant selection divergence was identified in SAG while positive selection was detected in LUM when okapi is compared with ruminants and other mammals. Sequence analysis of OPN1LW showed that at least one of the sites known to affect spectral sensitivity of the red pigment is uniquely divergent between giraffe and other ruminants. Discussion By taking a systemic approach to gene function in vision, the results provide the first molecular clues associated with giraffe and okapi vision adaptations. At least some of the genes that exhibit signature of selection may reflect adaptive response to differences in giraffe and okapi habitat. We hypothesize that requirement for long distance vision associated with predation and communication with conspecifics likely played an important role in the adaptive pressure on giraffe vision genes.
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Affiliation(s)
- Edson Ishengoma
- The School of Life Sciences and Bio-Engineering, Nelson Mandela African Institution of Science and Technology, Arusha, Tanzania; Mkwawa University of College of Education, University of Dar-es-Salaam, Iringa, Tanzania
| | - Morris Agaba
- The School of Life Sciences and Bio-Engineering, Nelson Mandela African Institution of Science and Technology , Arusha , Tanzania
| | - Douglas R Cavener
- Department of Biology and the Huck Institute of Life Sciences, Pennsylvania State University , University Park , PA , United States
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16
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Melin AD, Khetpal V, Matsushita Y, Zhou K, Campos FA, Welker B, Kawamura S. Howler monkey foraging ecology suggests convergent evolution of routine trichromacy as an adaptation for folivory. Ecol Evol 2017; 7:1421-1434. [PMID: 28261454 PMCID: PMC5330884 DOI: 10.1002/ece3.2716] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2016] [Revised: 11/28/2016] [Accepted: 12/18/2016] [Indexed: 02/03/2023] Open
Abstract
Primates possess remarkably variable color vision, and the ecological and social factors shaping this variation remain heavily debated. Here, we test whether central tenants of the folivory hypothesis of routine trichromacy hold for the foraging ecology of howler monkeys. Howler monkeys (genus Alouatta) and paleotropical primates (Parvorder: Catarrhini) have independently acquired routine trichromacy through fixation of distinct mid- to long-wavelength-sensitive (M/LWS) opsin genes on the X-chromosome. The presence of routine trichromacy in howlers, while other diurnal neotropical monkeys (Platyrrhini) possess polymorphic trichromacy, is poorly understood. A selective force proposed to explain the evolution of routine trichromacy in catarrhines-reliance on young, red leaves-has received scant attention in howlers, a gap we fill in this study. We recorded diet, sequenced M/LWS opsin genes in four social groups of Alouatta palliata, and conducted colorimetric analysis of leaves consumed in Sector Santa Rosa, Costa Rica. For a majority of food species, including Ficus trees, an important resource year-round, young leaves were more chromatically conspicuous from mature leaves to trichromatic than to hypothetical dichromatic phenotypes. We found that 18% of opsin genes were MWS/LWS hybrids; when combined with previous research, the incidence of hybrid M/LWS opsins in this species is 13%. In visual models of food discrimination ability, the hybrid trichromatic phenotype performed slightly poorer than normal trichromacy, but substantially better than dichromacy. Our results provide support for the folivory hypothesis of routine trichromacy. Similar ecological pressures, that is, the search for young, reddish leaves, may have driven the independent evolution of routine trichromacy in primates on separate continents. We discuss our results in the context of balancing selection acting on New World monkey opsin genes and hypothesize that howlers experience stronger selection against dichromatic phenotypes than other sympatric species, which rely more heavily on cryptic foods.
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Affiliation(s)
- Amanda D. Melin
- Department of Anthropology and ArchaeologyUniversity of CalgaryCalgaryABCanada
- Department of Medical Genetics and Alberta Children’s Hospital Research InstituteUniversity of CalgaryCalgaryABCanada
| | - Vishal Khetpal
- Department of AnthropologyWashington University in St. LouisSt. LouisMOUSA
| | - Yuka Matsushita
- Department of Integrated BiosciencesGraduate School of Frontier SciencesThe University of TokyoTokyoJapan
| | - Kaile Zhou
- Department of Integrated BiosciencesGraduate School of Frontier SciencesThe University of TokyoTokyoJapan
- Department of Plant ProtectionCollege of Agriculture and BiotechnologyZhejiang UniversityHangzhouZhejiangChina
| | - Fernando A. Campos
- Department of Anthropology and ArchaeologyUniversity of CalgaryCalgaryABCanada
- Department of AnthropologyTulane UniversityNew OrleansLAUSA
| | - Barbara Welker
- Department of AnthropologyState University of New York at GeneseoGeneseoNYUSA
| | - Shoji Kawamura
- Department of Integrated BiosciencesGraduate School of Frontier SciencesThe University of TokyoTokyoJapan
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17
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Kawamura S, Melin AD. Evolution of Genes for Color Vision and the Chemical Senses in Primates. EVOLUTION OF THE HUMAN GENOME I 2017. [DOI: 10.1007/978-4-431-56603-8_10] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/16/2023]
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18
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Tsutsui K, Otoh M, Sakurai K, Suzuki-Hashido N, Hayakawa T, Misaka T, Ishimaru Y, Aureli F, Melin AD, Kawamura S, Imai H. Variation in ligand responses of the bitter taste receptors TAS2R1 and TAS2R4 among New World monkeys. BMC Evol Biol 2016; 16:208. [PMID: 27733116 PMCID: PMC5062938 DOI: 10.1186/s12862-016-0783-0] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2016] [Accepted: 09/30/2016] [Indexed: 12/02/2022] Open
Abstract
Background New World monkeys (NWMs) are unique in that they exhibit remarkable interspecific variation in color vision and feeding behavior, making them an excellent model for studying sensory ecology. However, it is largely unknown whether non-visual senses co-vary with feeding ecology, especially gustation, which is expected to be indispensable in food selection. Bitter taste, which is mediated by bitter taste receptors (TAS2Rs) in the tongue, helps organisms avoid ingesting potentially toxic substances in food. In this study, we compared the ligand sensitivities of the TAS2Rs of five species of NWMs by heterologous expression in HEK293T cells and calcium imaging. Results We found that TAS2R1 and TAS2R4 orthologs differ in sensitivity among the NWM species for colchicine and camphor, respectively. We then reconstructed the ancestral receptors of NWM TAS2R1 and TAS2R4, measured the evolutionary shift in ligand sensitivity, and identified the amino acid replacement at residue 62 as responsible for the high sensitivity of marmoset TAS2R4 to colchicine. Conclusions Our results provide a basis for understanding the differences in feeding ecology among NWMs with respect to bitter taste. Electronic supplementary material The online version of this article (doi:10.1186/s12862-016-0783-0) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Kei Tsutsui
- Primate Research Institute, Kyoto University, Inuyama, Japan
| | - Masahiro Otoh
- Department of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Japan
| | - Kodama Sakurai
- Department of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Japan
| | | | - Takashi Hayakawa
- Primate Research Institute, Kyoto University, Inuyama, Japan.,Japan Monkey Centre, Inuyama, Japan
| | - Takumi Misaka
- Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, Japan
| | - Yoshiro Ishimaru
- Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, Japan
| | - Filippo Aureli
- Research Centre in Evolutionary Anthropology and Palaeoecology, Liverpool John Moores University, Liverpool, UK.,Instituto de Neuroetologia, Universidad Veracruzana, Xalapa, Mexico
| | - Amanda D Melin
- Departments of Anthropology & Archaeology and Medical Genetics, University of Calgary, Calgary, Canada
| | - Shoji Kawamura
- Department of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Japan.
| | - Hiroo Imai
- Primate Research Institute, Kyoto University, Inuyama, Japan.
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19
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Kawamura S, Kasagi S, Kasai D, Tezuka A, Shoji A, Takahashi A, Imai H, Kawata M. Spectral sensitivity of guppy visual pigments reconstituted in vitro to resolve association of opsins with cone cell types. Vision Res 2016; 127:67-73. [DOI: 10.1016/j.visres.2016.06.013] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/29/2016] [Revised: 06/21/2016] [Accepted: 06/29/2016] [Indexed: 10/21/2022]
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20
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Kawamura S. Color vision diversity and significance in primates inferred from genetic and field studies. Genes Genomics 2016; 38:779-791. [PMID: 27594978 PMCID: PMC4987397 DOI: 10.1007/s13258-016-0448-9] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2016] [Accepted: 06/29/2016] [Indexed: 11/26/2022]
Abstract
Color provides a reliable cue for object detection and identification during various behaviors such as foraging, mate choice, predator avoidance and navigation. The total number of colors that a visual system can discriminate is largely dependent on the number of different spectral types of cone opsins present in the retina and the spectral separations among them. Thus, opsins provide an excellent model system to study evolutionary interconnections at the genetic, phenotypic and behavioral levels. Primates have evolved a unique ability for three-dimensional color vision (trichromacy) from the two-dimensional color vision (dichromacy) present in the majority of other mammals. This was accomplished via allelic differentiation (e.g. most New World monkeys) or gene duplication (e.g. Old World primates) of the middle to long-wavelength sensitive (M/LWS, or red-green) opsin gene. However, questions remain regarding the behavioral adaptations of primate trichromacy. Allelic differentiation of the M/LWS opsins results in extensive color vision variability in New World monkeys, where trichromats and dichromats are found in the same breeding population, enabling us to directly compare visual performances among different color vision phenotypes. Thus, New World monkeys can serve as an excellent model to understand and evaluate the adaptive significance of primate trichromacy in a behavioral context. I shall summarize recent findings on color vision evolution in primates and introduce our genetic and behavioral study of vision-behavior interrelationships in free-ranging sympatric capuchin and spider monkey populations in Costa Rica.
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Affiliation(s)
- Shoji Kawamura
- Department of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, Bioscience BLDG 502, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8562 Japan
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21
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Corso J, Bowler M, Heymann EW, Roos C, Mundy NI. Highly polymorphic colour vision in a New World monkey with red facial skin, the bald uakari (Cacajao calvus). Proc Biol Sci 2016; 283:20160067. [PMID: 27053753 PMCID: PMC4843651 DOI: 10.1098/rspb.2016.0067] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2016] [Accepted: 03/16/2016] [Indexed: 11/12/2022] Open
Abstract
Colour vision is highly variable in New World monkeys (NWMs). Evidence for the adaptive basis of colour vision in this group has largely centred on environmental features such as foraging benefits for differently coloured foods or predator detection, whereas selection on colour vision for sociosexual communication is an alternative hypothesis that has received little attention. The colour vision of uakaris (Cacajao) is of particular interest because these monkeys have the most dramatic red facial skin of any primate, as well as a unique fission/fusion social system and a specialist diet of seeds. Here, we investigate colour vision in a wild population of the bald uakari,C. calvus, by genotyping the X-linked opsin locus. We document the presence of a polymorphic colour vision system with an unprecedented number of functional alleles (six), including a novel allele with a predicted maximum spectral sensitivity of 555 nm. This supports the presence of strong balancing selection on different alleles at this locus. We consider different hypotheses to explain this selection. One possibility is that trichromacy functions in sexual selection, enabling females to choose high-quality males on the basis of red facial coloration. In support of this, there is some evidence that health affects facial coloration in uakaris, as well as a high prevalence of blood-borne parasitism in wild uakari populations. Alternatively, the low proportion of heterozygous female trichromats in the population may indicate selection on different dichromatic phenotypes, which might be related to cryptic food coloration. We have uncovered unexpected diversity in the last major lineage of NWMs to be assayed for colour vision, which will provide an interesting system to dissect adaptation of polymorphic trichromacy.
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Affiliation(s)
- Josmael Corso
- Programa de Pós-Graduação em Genética e Biologia Molecular, Universidade Federal do Rio Grande do Sul, Avenida Bento Gonçalves 9500, Porto Alegre, Rio Grande do Sul 91501-970, Brazil
| | - Mark Bowler
- Behavioral Ecology Division, San Diego Zoo Institute for Conservation Research, 15600 San Pasqual Valley Road, Escondido, CA 92027-7000, USA Behavioral Ecology and Sociobiology Unit, German Primate Center, Leibniz Institute for Primate Research, Kellnerweg 4, Göttingen 37077, Germany
| | - Eckhard W Heymann
- Behavioral Ecology and Sociobiology Unit, German Primate Center, Leibniz Institute for Primate Research, Kellnerweg 4, Göttingen 37077, Germany
| | - Christian Roos
- Gene Bank of Primates and Primate Genetics Laboratory, German Primate Center, Leibniz Institute for Primate Research, Kellnerweg 4, Göttingen 37077, Germany
| | - Nicholas I Mundy
- Department of Zoology, University of Cambridge, Downing Street, Cambridge CB2 3EJ, UK
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22
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Mundy NI, Morningstar NC, Baden AL, Fernandez-Duque E, Dávalos VM, Bradley BJ. Can colour vision re-evolve? Variation in the X-linked opsin locus of cathemeral Azara's owl monkeys (Aotus azarae azarae). Front Zool 2016; 13:9. [PMID: 26913052 PMCID: PMC4765118 DOI: 10.1186/s12983-016-0139-z] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2015] [Accepted: 02/04/2016] [Indexed: 01/27/2023] Open
Abstract
BACKGROUND Do evolutionary specializations lead to evolutionary constraint? This appears plausible, particularly when specialization leads to loss of complex adaptations. In the owl monkey lineage, nocturnality clearly arose from a diurnal ancestor. This behavioural shift was accompanied by morphological changes in the eye and orbit and complete loss of colour vision via missense mutations in the gene encoding the short-wave sensitive visual pigment (SWS opsin). Interestingly, at least one subspecies of owl monkey, Azara's owl monkey (Aotus azarae azarae), has regained activity in daylight. Given that all primate species that are active in daylight, including primarily diurnal species and species that are active during both day and night, have at least dichromatic colour vision, it seems reasonable to propose that dichromacy would be adaptive in A. a. azarae. With a disabled SWS opsin, the main avenue available for Azara's owl monkeys to re-evolve colour vision is via a polymorphism in the intact X-linked opsin locus, which commonly occurs in other New World monkeys. To examine this possibility we assayed variation in the X-linked opsin of A. a. azarae, focusing on the three exons (3, 4 and 5) that control spectral sensitivity. RESULTS We found low opsin genetic variation on a population level, and no differences at the three main sites that lead to variation in spectral sensitivity in the opsins of other New World monkeys. Two rare alleles with single amino acid variants are segregating in the population, but previous functional studies indicate that these are unlikely to affect spectral sensitivity. CONCLUSIONS Genetic constraint on the re-evolution of colour vision is likely operating in Azara's owl monkey, which may affect the niche that this subspecies is able to occupy.
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Affiliation(s)
- N. I. Mundy
- />Department of Zoology, University of Cambridge, Cambridge, UK
| | | | - A. L. Baden
- />Department of Anthropology, Yale University, New Haven, CT USA
- />Department of Anthropology, Hunter College of the City University of New York, New York, USA
| | - E. Fernandez-Duque
- />Department of Anthropology, Yale University, New Haven, CT USA
- />Department of Anthropology, University of Pennsylvania, Pennsylvania, USA
- />Facultad de Recursos Naturales, Universidad Nacional de Formosa, Formosa, Argentina
| | - V. M. Dávalos
- />Facultad de Recursos Naturales, Universidad Nacional de Formosa, Formosa, Argentina
| | - B. J. Bradley
- />Department of Anthropology, Yale University, New Haven, CT USA
- />Center for the Advanced Study of Human Paleobiology, The George Washington University, Washington, DC USA
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23
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Valenta K, Edwards M, Rafaliarison RR, Johnson SE, Holmes SM, Brown KA, Dominy NJ, Lehman SM, Parra EJ, Melin AD. Visual ecology of true lemurs suggests a cathemeral origin for the primate cone opsin polymorphism. Funct Ecol 2015. [DOI: 10.1111/1365-2435.12575] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Affiliation(s)
- Kim Valenta
- Department of Anthropology & Archaeology University of Toronto 19 Russell St Toronto ON Canada
| | - Melissa Edwards
- Department of Anthropology University of Toronto at Mississauga 3359 Mississauga Rd. North Mississauga QC Canada
| | | | - Steig E. Johnson
- Department of Anthropology & Archaeology University of Calgary 2500 University Dr. NW. Calgary QC Canada
| | - Sheila M. Holmes
- Department of Anthropology & Archaeology University of Calgary 2500 University Dr. NW. Calgary QC Canada
| | - Kevin A. Brown
- Dalla Lana School of Public Health University of Toronto 155 College St. Toronto QC Canada
| | | | - Shawn M. Lehman
- Department of Anthropology & Archaeology University of Toronto 19 Russell St Toronto ON Canada
| | - Esteban J. Parra
- Department of Anthropology University of Toronto at Mississauga 3359 Mississauga Rd. North Mississauga QC Canada
| | - Amanda D. Melin
- Department of Anthropology Washington University One Brookings Dr. St. Louis MO USA
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Valenta K, Brown KA, Rafaliarison RR, Styler SA, Jackson D, Lehman SM, Chapman CA, Melin AD. Sensory integration during foraging: the importance of fruit hardness, colour, and odour to brown lemurs. Behav Ecol Sociobiol 2015. [DOI: 10.1007/s00265-015-1998-6] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Hofmann L, Palczewski K. Advances in understanding the molecular basis of the first steps in color vision. Prog Retin Eye Res 2015; 49:46-66. [PMID: 26187035 DOI: 10.1016/j.preteyeres.2015.07.004] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2015] [Revised: 07/07/2015] [Accepted: 07/09/2015] [Indexed: 01/05/2023]
Abstract
Serving as one of our primary environmental inputs, vision is the most sophisticated sensory system in humans. Here, we present recent findings derived from energetics, genetics and physiology that provide a more advanced understanding of color perception in mammals. Energetics of cis-trans isomerization of 11-cis-retinal accounts for color perception in the narrow region of the electromagnetic spectrum and how human eyes can absorb light in the near infrared (IR) range. Structural homology models of visual pigments reveal complex interactions of the protein moieties with the light sensitive chromophore 11-cis-retinal and that certain color blinding mutations impair secondary structural elements of these G protein-coupled receptors (GPCRs). Finally, we identify unsolved critical aspects of color tuning that require future investigation.
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Affiliation(s)
- Lukas Hofmann
- Department of Pharmacology and Cleveland Center for Membrane and Structural Biology, School of Medicine, Case Western Reserve University, 10900 Euclid Avenue, Cleveland, OH 44106, USA.
| | - Krzysztof Palczewski
- Department of Pharmacology and Cleveland Center for Membrane and Structural Biology, School of Medicine, Case Western Reserve University, 10900 Euclid Avenue, Cleveland, OH 44106, USA.
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de Lima EM, Pessoa DMA, Sena L, de Melo AGC, de Castro PHG, Oliveira-Mendes AC, Schneider MPC, Pessoa VF. Polymorphic color vision in captive Uta Hick's cuxiús, or bearded sakis (Chiropotes utahickae). Am J Primatol 2014; 77:66-75. [PMID: 25224123 DOI: 10.1002/ajp.22311] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2014] [Revised: 05/29/2014] [Accepted: 05/31/2014] [Indexed: 11/10/2022]
Abstract
The pitheciines (Chiropotes, Pithecia, and Cacajao) are frugivorous Neotropical primates that specialize on the predation of seeds from unripe fruits, usually cryptic against the foliage. However, little is known about the color vision distribution within this taxon, and even less about the abilities shared by these animals regarding discrimination of chromatic targets. The aim of this study was to evaluate the color vision perception of captive Uta Hick's cuxiús, or bearded sakis (Chiropotes utahickae) through a behavioral paradigm of color visual discrimination, as well as to estimate, by genetic studies, the number and kinds of medium to long wavelength cone photopigment (opsins) encoded by this species. Among 12 cuxiús (7 males and 5 females) studied only 1 female was diagnosed as a trichromat. Results from genotyping were in line with our behavioral data and showed that cuxiús carried one (dichromat) or two (trichromat) medium to long wavelength pigments alleles, demonstrating a color vision polymorphism in C. utahickae similar to the majority of Neotropical Primates.
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