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For: Aykanat T, Johnston SE, Orell P, Niemelä E, Erkinaro J, Primmer CR. Low but significant genetic differentiation underlies biologically meaningful phenotypic divergence in a large Atlantic salmon population. Mol Ecol 2015;24:5158-74. [DOI: 10.1111/mec.13383] [Citation(s) in RCA: 40] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2015] [Revised: 09/04/2015] [Accepted: 09/09/2015] [Indexed: 01/13/2023]
Number Cited by Other Article(s)
1
Mobley KB, Barton HJ, Ellmén M, Ruokolainen A, Guttorm O, Pieski H, Orell P, Erkinaro J, Primmer CR. Sex-specific overdominance at the maturation vgll3 gene for reproductive fitness in wild Atlantic salmon. Mol Ecol 2024;33:e17435. [PMID: 38877757 DOI: 10.1111/mec.17435] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2023] [Revised: 04/11/2024] [Accepted: 05/15/2024] [Indexed: 06/16/2024]
2
Andersson A, Karlsson S, Ryman N, Laikre L. Monitoring genetic diversity with new indicators applied to an alpine freshwater top predator. Mol Ecol 2022;31:6422-6439. [PMID: 36170147 PMCID: PMC10091952 DOI: 10.1111/mec.16710] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2021] [Revised: 09/08/2022] [Accepted: 09/15/2022] [Indexed: 01/13/2023]
3
Saha A, Andersson A, Kurland S, Keehnen NLP, Kutschera VE, Hössjer O, Ekman D, Karlsson S, Kardos M, Ståhl G, Allendorf FW, Ryman N, Laikre L. Whole-genome resequencing confirms reproductive isolation between sympatric demes of brown trout (Salmo trutta) detected with allozymes. Mol Ecol 2021;31:498-511. [PMID: 34699656 DOI: 10.1111/mec.16252] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2020] [Revised: 10/16/2021] [Accepted: 10/18/2021] [Indexed: 12/21/2022]
4
Sebastian W, Sukumaran S, Abdul Azeez S, Muraleedharan KR, Dinesh Kumar PK, Zacharia PU, Gopalakrishnan A. Genomic investigations provide insights into the mechanisms of resilience to heterogeneous habitats of the Indian Ocean in a pelagic fish. Sci Rep 2021;11:20690. [PMID: 34667208 PMCID: PMC8526693 DOI: 10.1038/s41598-021-00129-5] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2021] [Accepted: 10/05/2021] [Indexed: 11/08/2022]  Open
5
Delgado ML, Ruzzante DE. Investigating Diadromy in Fishes and Its Loss in an -Omics Era. iScience 2020;23:101837. [PMID: 33305191 PMCID: PMC7718486 DOI: 10.1016/j.isci.2020.101837] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]  Open
6
Zueva KJ, Lumme J, Veselov AE, Primmer CR, Pritchard VL. Population genomics reveals repeated signals of adaptive divergence in the Atlantic salmon of north‐eastern Europe. J Evol Biol 2020;34:866-878. [DOI: 10.1111/jeb.13732] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2020] [Revised: 10/09/2020] [Accepted: 10/12/2020] [Indexed: 02/06/2023]
7
Thorstensen MJ, Jeffrey JD, Treberg JR, Watkinson DA, Enders EC, Jeffries KM. Genomic signals found using RNA sequencing show signatures of selection and subtle population differentiation in walleye (Sander vitreus) in a large freshwater ecosystem. Ecol Evol 2020;10:7173-7188. [PMID: 32760520 PMCID: PMC7391302 DOI: 10.1002/ece3.6418] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2020] [Revised: 05/04/2020] [Accepted: 05/07/2020] [Indexed: 12/29/2022]  Open
8
Mobley KB, Granroth‐Wilding H, Ellmén M, Orell P, Erkinaro J, Primmer CR. Time spent in distinct life history stages has sex‐specific effects on reproductive fitness in wild Atlantic salmon. Mol Ecol 2020;29:1173-1184. [DOI: 10.1111/mec.15390] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2019] [Revised: 02/17/2020] [Accepted: 02/17/2020] [Indexed: 12/16/2022]
9
Zhou Q, Su Z, Li Y, Liu Y, Wang L, Lu S, Wang S, Gan T, Liu F, Zhou X, Wei M, Liu G, Chen S. Genome-Wide Association Mapping and Gene Expression Analyses Reveal Genetic Mechanisms of Disease Resistance Variations in Cynoglossus semilaevis. Front Genet 2019;10:1167. [PMID: 31824570 PMCID: PMC6880758 DOI: 10.3389/fgene.2019.01167] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2019] [Accepted: 10/23/2019] [Indexed: 12/15/2022]  Open
10
Waples RS, Naish KA, Primmer CR. Conservation and Management of Salmon in the Age of Genomics. Annu Rev Anim Biosci 2019;8:117-143. [PMID: 31730428 DOI: 10.1146/annurev-animal-021419-083617] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
11
Schmidt DJ, Huey JA, Hughes JM. Genome-Wide SNPs Identify Limits to Connectivity in the Extreme Freshwater Disperser, Spangled Perch Leiopotherapon unicolor (Terapontidae). J Hered 2019;109:320-325. [PMID: 29228349 DOI: 10.1093/jhered/esx101] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2017] [Accepted: 11/10/2017] [Indexed: 12/31/2022]  Open
12
Mastrochirico-Filho VA, Del Pazo F, Hata ME, Villanova GV, Foresti F, Vera M, Martínez P, Porto-Foresti F, Hashimoto DT. Assessing Genetic Diversity for a Pre-Breeding Program in Piaractus mesopotamicus by SNPs and SSRs. Genes (Basel) 2019;10:genes10090668. [PMID: 31480436 PMCID: PMC6771149 DOI: 10.3390/genes10090668] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2019] [Revised: 08/28/2019] [Accepted: 08/28/2019] [Indexed: 11/16/2022]  Open
13
Aykanat T, Ozerov M, Vähä JP, Orell P, Niemelä E, Erkinaro J, Primmer CR. Co-inheritance of sea age at maturity and iteroparity in the Atlantic salmon vgll3 genomic region. J Evol Biol 2019;32:343-355. [PMID: 30697850 DOI: 10.1101/412288] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2018] [Revised: 12/03/2018] [Accepted: 01/24/2019] [Indexed: 05/25/2023]
14
Aykanat T, Ozerov M, Vähä J, Orell P, Niemelä E, Erkinaro J, Primmer CR. Co‐inheritance of sea age at maturity and iteroparity in the Atlantic salmonvgll3genomic region. J Evol Biol 2019;32:343-355. [DOI: 10.1111/jeb.13418] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2018] [Revised: 12/03/2018] [Accepted: 01/24/2019] [Indexed: 01/16/2023]
15
Mobley KB, Granroth-Wilding H, Ellmen M, Vähä JP, Aykanat T, Johnston SE, Orell P, Erkinaro J, Primmer CR. Home ground advantage: Local Atlantic salmon have higher reproductive fitness than dispersers in the wild. SCIENCE ADVANCES 2019;5:eaav1112. [PMID: 30820455 PMCID: PMC6392789 DOI: 10.1126/sciadv.aav1112] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/15/2018] [Accepted: 01/14/2019] [Indexed: 05/04/2023]
16
Wellband K, Mérot C, Linnansaari T, Elliott JAK, Curry RA, Bernatchez L. Chromosomal fusion and life history-associated genomic variation contribute to within-river local adaptation of Atlantic salmon. Mol Ecol 2018;28:1439-1459. [PMID: 30506831 DOI: 10.1111/mec.14965] [Citation(s) in RCA: 38] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2018] [Revised: 11/01/2018] [Accepted: 11/02/2018] [Indexed: 12/30/2022]
17
Ősz Á, Horváth Á, Hoitsy G, Kánainé Sipos D, Keszte S, Sáfrány AJ, Marić S, Palkó C, Tóth B, Urbányi B, Kovács B. The genetic status of the Hungarian brown trout populations: exploration of a blind spot on the European map of Salmo trutta studies. PeerJ 2018;6:e5152. [PMID: 30258703 PMCID: PMC6152457 DOI: 10.7717/peerj.5152] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2018] [Accepted: 06/11/2018] [Indexed: 11/22/2022]  Open
18
Almojil D, Cliff G, Spaet JLY. Weak population structure of the Spot-tail shark Carcharhinus sorrah and the Blacktip shark C. limbatus along the coasts of the Arabian Peninsula, Pakistan, and South Africa. Ecol Evol 2018;8:9536-9549. [PMID: 30377521 PMCID: PMC6194305 DOI: 10.1002/ece3.4468] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2017] [Revised: 07/22/2018] [Accepted: 07/23/2018] [Indexed: 11/24/2022]  Open
19
Jorde PE, Andersson A, Ryman N, Laikre L. Are we underestimating the occurrence of sympatric populations? Mol Ecol 2018;27:4011-4025. [PMID: 30137668 DOI: 10.1111/mec.14846] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2018] [Accepted: 08/07/2018] [Indexed: 12/25/2022]
20
Genomic signatures of parasite-driven natural selection in north European Atlantic salmon (Salmo salar). Mar Genomics 2018;39:26-38. [DOI: 10.1016/j.margen.2018.01.001] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2017] [Revised: 12/16/2017] [Accepted: 01/08/2018] [Indexed: 02/06/2023]
21
Pritchard VL, Mäkinen H, Vähä JP, Erkinaro J, Orell P, Primmer CR. Genomic signatures of fine-scale local selection in Atlantic salmon suggest involvement of sexual maturation, energy homeostasis and immune defence-related genes. Mol Ecol 2018;27:2560-2575. [DOI: 10.1111/mec.14705] [Citation(s) in RCA: 37] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2017] [Revised: 03/30/2018] [Accepted: 04/02/2018] [Indexed: 12/14/2022]
22
Stojanova B, Šurinová M, Klápště J, Koláříková V, Hadincová V, Münzbergová Z. Adaptive differentiation of Festuca rubra along a climate gradient revealed by molecular markers and quantitative traits. PLoS One 2018;13:e0194670. [PMID: 29617461 PMCID: PMC5884518 DOI: 10.1371/journal.pone.0194670] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2017] [Accepted: 03/07/2018] [Indexed: 12/02/2022]  Open
23
Wollebaek J, Heggenes J, Roed KH. Life histories and ecotype conservation in an adaptive vertebrate: Genetic constitution of piscivorous brown trout covaries with habitat stability. Ecol Evol 2018;8:2729-2745. [PMID: 29531690 PMCID: PMC5838037 DOI: 10.1002/ece3.3828] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2017] [Revised: 11/30/2017] [Accepted: 12/06/2017] [Indexed: 12/23/2022]  Open
24
Canales-Aguirre CB, Seeb LW, Seeb JE, Cádiz MI, Musleh SS, Arismendi I, Gajardo G, Galleguillos R, Gomez-Uchida D. Contrasting genetic metrics and patterns among naturalized rainbow trout (Oncorhynchus mykiss) in two Patagonian lakes differentially impacted by trout aquaculture. Ecol Evol 2017;8:273-285. [PMID: 29321870 PMCID: PMC5756871 DOI: 10.1002/ece3.3574] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2017] [Revised: 10/01/2017] [Accepted: 10/04/2017] [Indexed: 11/29/2022]  Open
25
Population genomics of an endemic Mediterranean fish: differentiation by fine scale dispersal and adaptation. Sci Rep 2017;7:43417. [PMID: 28262802 PMCID: PMC5338269 DOI: 10.1038/srep43417] [Citation(s) in RCA: 57] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2016] [Accepted: 01/24/2017] [Indexed: 12/04/2022]  Open
26
Piccolo JJ. Conservation genomics: coming to a salmonid near you. JOURNAL OF FISH BIOLOGY 2016;89:2735-2740. [PMID: 27730637 DOI: 10.1111/jfb.13172] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/14/2016] [Accepted: 09/08/2016] [Indexed: 06/06/2023]
27
Aykanat T, Lindqvist M, Pritchard VL, Primmer CR. From population genomics to conservation and management: a workflow for targeted analysis of markers identified using genome-wide approaches in Atlantic salmon Salmo salar. JOURNAL OF FISH BIOLOGY 2016;89:2658-2679. [PMID: 27709620 DOI: 10.1111/jfb.13149] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/23/2016] [Accepted: 08/29/2016] [Indexed: 06/06/2023]
28
Pritchard VL, Erkinaro J, Kent MP, Niemelä E, Orell P, Lien S, Primmer CR. Single nucleotide polymorphisms to discriminate different classes of hybrid between wild Atlantic salmon and aquaculture escapees. Evol Appl 2016;9:1017-31. [PMID: 27606009 PMCID: PMC4999531 DOI: 10.1111/eva.12407] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2015] [Accepted: 06/07/2016] [Indexed: 12/14/2022]  Open
29
Richardson JL, Brady SP, Wang IJ, Spear SF. Navigating the pitfalls and promise of landscape genetics. Mol Ecol 2016;25:849-63. [PMID: 26756865 DOI: 10.1111/mec.13527] [Citation(s) in RCA: 122] [Impact Index Per Article: 15.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2015] [Revised: 12/12/2015] [Accepted: 01/07/2016] [Indexed: 12/17/2022]
30
Sex-dependent dominance at a single locus maintains variation in age at maturity in salmon. Nature 2015;528:405-8. [DOI: 10.1038/nature16062] [Citation(s) in RCA: 401] [Impact Index Per Article: 44.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2015] [Accepted: 10/07/2015] [Indexed: 01/14/2023]
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