1
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Evaluation of Potential In Vitro Recombination Events in Codon Deoptimized FMDV Strains. Viruses 2023; 15:v15030670. [PMID: 36992379 PMCID: PMC10052203 DOI: 10.3390/v15030670] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2023] [Revised: 02/10/2023] [Accepted: 02/25/2023] [Indexed: 03/06/2023] Open
Abstract
Codon deoptimization (CD) has been recently used as a possible strategy to derive foot-and-mouth disease (FMD) live-attenuated vaccine (LAV) candidates containing DIVA markers. However, reversion to virulence, or loss of DIVA, from possible recombination with wild-type (WT) strains has yet to be analyzed. An in vitro assay was developed to quantitate the levels of recombination between WT and a prospective A24-P2P3 partially deoptimized LAV candidate. By using two genetically engineered non-infectious RNA templates, we demonstrate that recombination can occur within non-deoptimized viral genomic regions (i.e., 3′end of P3 region). The sequencing of single plaque recombinants revealed a variety of genome compositions, including full-length WT sequences at the consensus level and deoptimized sequences at the sub-consensus/consensus level within the 3′end of the P3 region. Notably, after further passage, two recombinants that contained deoptimized sequences evolved to WT. Overall, recombinants featuring large stretches of CD or DIVA markers were less fit than WT viruses. Our results indicate that the developed assay is a powerful tool to evaluate the recombination of FMDV genomes in vitro and should contribute to the improved design of FMDV codon deoptimized LAV candidates.
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2
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Perez-Martin E, Beechler B, Zhang F, Scott K, de Klerk-Lorist LM, Limon G, Dugovich B, Gubbins S, Botha A, Hetem R, van Schalkwyk L, Juleff N, Maree FF, Jolles A, Charleston B. Viral dynamics and immune responses to foot-and-mouth disease virus in African buffalo (Syncerus caffer). Vet Res 2022; 53:63. [PMID: 35927724 PMCID: PMC9351118 DOI: 10.1186/s13567-022-01076-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2022] [Accepted: 05/17/2022] [Indexed: 11/29/2022] Open
Abstract
Foot-and-mouth disease (FMD) is one of the most important livestock diseases restricting international trade. While African buffalo (Syncerus caffer) act as the main wildlife reservoir, viral and immune response dynamics during FMD virus acute infection have not been described before in this species. We used experimental needle inoculation and contact infections with three Southern African Territories serotypes to assess clinical, virological and immunological dynamics for thirty days post infection. Clinical FMD in the needle inoculated buffalo was mild and characterised by pyrexia. Despite the absence of generalised vesicles, all contact animals were readily infected with their respective serotypes within the first two to nine days after being mixed with needle challenged buffalo. Irrespective of the route of infection or serotype, there were positive associations between the viral loads in blood and the induction of host innate pro-inflammatory cytokines and acute phase proteins. Viral loads in blood and tonsil swabs were tightly correlated during the acute phase of the infection, however, viraemia significantly declined after a peak at four days post-infection (dpi), which correlated with the presence of detectable neutralising antibodies. In contrast, infectious virus was isolated in the tonsil swabs until the last sampling point (30 dpi) in most animals. The pattern of virus detection in serum and tonsil swabs was similar for all three serotypes in the direct challenged and contact challenged animals. We have demonstrated for the first time that African buffalo are indeed systemically affected by FMD virus and clinical FMD in buffalo is characterized by a transient pyrexia. Despite the lack of FMD lesions, infection of African buffalo was characterised by high viral loads in blood and oropharynx, rapid and strong host innate and adaptive immune responses and high transmissibility.
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Affiliation(s)
| | - Brianna Beechler
- Carlson College of Veterinary Medicine, Oregon State University, Corvallis, OR, USA
| | - Fuquan Zhang
- The Pirbright Institute, Woking, Surrey, UK.,UCL Institute of Prion Diseases, London, UK
| | - Katherine Scott
- ARC-OVI Transboundary Animal Disease Section (TAD), Vaccine and Diagnostic Development Programme, Onderstepoort, Gauteng, South Africa
| | | | | | - Brian Dugovich
- Carlson College of Veterinary Medicine, Oregon State University, Corvallis, OR, USA
| | | | - Arista Botha
- Brain Function Research Group, School of Physiology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa
| | - Robyn Hetem
- School of Animal, Plant and Environmental Sciences, University of the Witwatersrand, Johannesburg, South Africa
| | | | | | - Francois F Maree
- ARC-OVI Transboundary Animal Disease Section (TAD), Vaccine and Diagnostic Development Programme, Onderstepoort, Gauteng, South Africa.,Clinglobal, B03/04 The Tamarin Commercial Hub, Jacaranda Avenue, Tamarin, 90903, Mauritius
| | - Anna Jolles
- Carlson College of Veterinary Medicine, Oregon State University, Corvallis, OR, USA
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3
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Viral Population Diversity during Co-Infection of Foot-And-Mouth Disease Virus Serotypes SAT1 and SAT2 in African Buffalo in Kenya. Viruses 2022; 14:v14050897. [PMID: 35632639 PMCID: PMC9145140 DOI: 10.3390/v14050897] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2022] [Revised: 04/20/2022] [Accepted: 04/21/2022] [Indexed: 02/06/2023] Open
Abstract
African buffalo are the natural reservoirs of the SAT serotypes of foot-and-mouth disease virus (FMDV) in sub-Saharan Africa. Most buffalo are exposed to multiple FMDV serotypes early in life, and a proportion of them become persistently infected carriers. Understanding the genetic diversity and evolution of FMDV in carrier animals is critical to elucidate how FMDV persists in buffalo populations. In this study, we obtained oropharyngeal (OPF) fluid from naturally infected African buffalo, and characterized the genetic diversity of FMDV. Out of 54 FMDV-positive OPF, 5 were co-infected with SAT1 and SAT2 serotypes. From the five co-infected buffalo, we obtained eighty-nine plaque-purified isolates. Isolates obtained directly from OPF and plaque purification were sequenced using next-generation sequencing (NGS). Phylogenetic analyses of the sequences obtained from recombination-free protein-coding regions revealed a discrepancy in the topology of capsid proteins and non-structural proteins. Despite the high divergence in the capsid phylogeny between SAT1 and SAT2 serotypes, viruses from different serotypes that were collected from the same host had a high genetic similarity in non-structural protein-coding regions P2 and P3, suggesting interserotypic recombination. In two of the SAT1 and SAT2 co-infected buffalo identified at the first passage of viral isolation, the plaque-derived SAT2 genomes were distinctly grouped in two different genotypes. These genotypes were not initially detected with the NGS from the first passage (non-purified) virus isolation sample. In one animal with two SAT2 haplotypes, one plaque-derived chimeric sequence was found. These findings demonstrate within-host evolution through recombination and point mutation contributing to broad viral diversity in the wildlife reservoir. These mechanisms may be critical to FMDV persistence at the individual animal and population levels, and may contribute to the emergence of new viruses that have the ability to spill-over to livestock and other wildlife species.
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4
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Jolles A, Gorsich E, Gubbins S, Beechler B, Buss P, Juleff N, de Klerk-Lorist LM, Maree F, Perez-Martin E, van Schalkwyk OL, Scott K, Zhang F, Medlock J, Charleston B. Endemic persistence of a highly contagious pathogen: Foot-and-mouth disease in its wildlife host. Science 2021; 374:104-109. [PMID: 34591637 DOI: 10.1126/science.abd2475] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Abstract
Extremely contagious pathogens are a global biosecurity threat because of their high burden of morbidity and mortality, as well as their capacity for fast-moving epidemics that are difficult to quell. Understanding the mechanisms enabling persistence of highly transmissible pathogens in host populations is thus a central problem in disease ecology. Through a combination of experimental and theoretical approaches, we investigated how highly contagious foot-and-mouth disease viruses persist in the African buffalo, which serves as their wildlife reservoir. We found that viral persistence through transmission among acutely infected hosts alone is unlikely. However, the inclusion of occasional transmission from persistently infected carriers reliably rescues the most infectious viral strain from fade-out. Additional mechanisms such as antigenic shift, loss of immunity, or spillover among host populations may be required for persistence of less transmissible strains.
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Affiliation(s)
- Anna Jolles
- Department of Biomedical Sciences, Oregon State University, Corvallis, OR 97331, USA.,Department of Integrative Biology, Oregon State University, Corvallis, OR 97331, USA
| | - Erin Gorsich
- Department of Biomedical Sciences, Oregon State University, Corvallis, OR 97331, USA.,Zeeman Institute for Systems Biology and Infectious Disease Epidemiology Research, University of Warwick, Coventry, CV4 7AL, UK.,School of Life Sciences, University of Warwick, Coventry, CV4 7AL, UK
| | - Simon Gubbins
- The Pirbright Institute, Ash Road, Pirbright, Surrey, GU24 0NF, UK
| | - Brianna Beechler
- Department of Biomedical Sciences, Oregon State University, Corvallis, OR 97331, USA
| | - Peter Buss
- SANParks, Veterinary Wildlife Services, Kruger National Park, 1350 Skukuza, South Africa
| | - Nick Juleff
- Bill & Melinda Gates Foundation, Livestock Program, Seattle 98109, WA, USA
| | - Lin-Mari de Klerk-Lorist
- Office of the State Veterinarian, Department of Agriculture, Land Reform and Rural Development, Government of South Africa, 1350 Skukuza, South Africa
| | - Francois Maree
- Vaccine and Diagnostic Research Programme, Onderstepoort Veterinary Institute, Agricultural Research Council, Private Bag X05, Onderstepoort 0110, South Africa.,South Africa Department of Microbiology and Plant Pathology, University of Pretoria, Pretoria, South Africa
| | - Eva Perez-Martin
- The Pirbright Institute, Ash Road, Pirbright, Surrey, GU24 0NF, UK
| | - O L van Schalkwyk
- Office of the State Veterinarian, Department of Agriculture, Land Reform and Rural Development, Government of South Africa, 1350 Skukuza, South Africa.,Department of Veterinary Tropical Diseases, Faculty of Veterinary Science, University of Pretoria, Onderstepoort, South Africa.,Department of Migration, Max Planck Institute of Animal Behavior, Am Obstberg 1 Radolfzell, 78315, Germany
| | - Katherine Scott
- Vaccine and Diagnostic Research Programme, Onderstepoort Veterinary Institute, Agricultural Research Council, Private Bag X05, Onderstepoort 0110, South Africa
| | - Fuquan Zhang
- Institute of Prion Diseases, University College London, London, WC1E 6BT, UK
| | - Jan Medlock
- Department of Biomedical Sciences, Oregon State University, Corvallis, OR 97331, USA
| | - Bryan Charleston
- The Pirbright Institute, Ash Road, Pirbright, Surrey, GU24 0NF, UK
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5
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Guinat C, Vergne T, Kocher A, Chakraborty D, Paul MC, Ducatez M, Stadler T. What can phylodynamics bring to animal health research? Trends Ecol Evol 2021; 36:837-847. [PMID: 34034912 DOI: 10.1016/j.tree.2021.04.013] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2021] [Revised: 04/22/2021] [Accepted: 04/29/2021] [Indexed: 11/18/2022]
Abstract
Infectious diseases are a major burden to global economies, and public and animal health. To date, quantifying the spread of infectious diseases to inform policy making has traditionally relied on epidemiological data collected during epidemics. However, interest has grown in recent phylodynamic techniques to infer pathogen transmission dynamics from genetic data. Here, we provide examples of where this new discipline has enhanced disease management in public health and illustrate how it could be further applied in animal health. In particular, we describe how phylodynamics can address fundamental epidemiological questions, such as inferring key transmission parameters in animal populations and quantifying spillover events at the wildlife-livestock interface, and generate important insights for the design of more effective control strategies.
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Affiliation(s)
- Claire Guinat
- Department of Biosystems Science and Engineering, ETH Zürich, Mattenstrasse 26, 4058 Basel, Switzerland; Swiss Institute of Bioinformatics (SIB), Lausanne, Switzerland.
| | - Timothee Vergne
- IHAP, Université de Toulouse, INRAE, ENVT, 23 Chemin des Capelles, 31300 Toulouse, France
| | - Arthur Kocher
- Transmission, Infection, Diversification & Evolution (tide) group, Max Planck Institute for the Science of Human History, Kahlaische str. 10, 07745 Jena, Germany
| | - Debapryio Chakraborty
- IHAP, Université de Toulouse, INRAE, ENVT, 23 Chemin des Capelles, 31300 Toulouse, France
| | - Mathilde C Paul
- IHAP, Université de Toulouse, INRAE, ENVT, 23 Chemin des Capelles, 31300 Toulouse, France
| | - Mariette Ducatez
- IHAP, Université de Toulouse, INRAE, ENVT, 23 Chemin des Capelles, 31300 Toulouse, France
| | - Tanja Stadler
- Department of Biosystems Science and Engineering, ETH Zürich, Mattenstrasse 26, 4058 Basel, Switzerland; Swiss Institute of Bioinformatics (SIB), Lausanne, Switzerland
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6
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Omondi GP, Gakuya F, Arzt J, Sangula A, Hartwig E, Pauszek S, Smoliga G, Brito B, Perez A, Obanda V, VanderWaal K. The role of African buffalo in the epidemiology of foot-and-mouth disease in sympatric cattle and buffalo populations in Kenya. Transbound Emerg Dis 2020; 67:2206-2221. [PMID: 32303117 DOI: 10.1111/tbed.13573] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2018] [Revised: 02/12/2020] [Accepted: 03/04/2020] [Indexed: 02/06/2023]
Abstract
Quantitative knowledge on the contribution of African buffalo to the epidemiology of foot-and-mouth disease virus (FMDV) in East Africa is lacking, and this information is essential for the design of control programs in the region. The objective of this study was to investigate the epidemiology of FMDV in buffalo, including the role of buffalo in the circulation of FMDV in livestock populations. We collected blood and oropharyngeal fluids from 92 wild buffalo and 98 sympatric cattle in central Kenya and sequenced the virus' VP1 coding region. We show that FMDV has a high seroprevalence in buffalo (~77%) and targeted cattle (~93%). In addition, we recovered 80 FMDV sequences from buffalo, all of which were serotype SAT1 and SAT2, and four serotype O and A sequences from sympatric cattle. Notably, six individual buffalo were co-infected with both SAT1 and SAT2. Amongst sympatric buffalo and cattle, the fact that no SAT1 or 2 sequences were found in cattle suggests that transmission of FMDV from buffalo to sympatric cattle is rare. Similarly, there was no evidence that serotype O and A sequences found in cattle were transmitted to buffalo. However, viruses from FMDV outbreaks in cattle elsewhere in Kenya were closely related to SAT1 and SAT2 viruses found in buffalo in this study, suggesting that FMDV in cattle and buffalo do not constitute independently evolving populations. We also show that fine-scale geographic features, such as rivers, influence the circulation of FMDV in buffalo and that social segregation amongst sympatric herds may limit between-herd transmission. These results significantly advance our understanding of the ecology and molecular epidemiology of FMDV at wildlife-livestock interfaces in East Africa and will help to inform the design of control and surveillance strategies for this disease in the region.
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Affiliation(s)
- George P Omondi
- Department of Veterinary Population Medicine, College of Veterinary Medicine, University of Minnesota, St. Paul, MN, USA
- Ahadi Veterinary Resource Center, Nairobi, Kenya
| | - Francis Gakuya
- Veterinary Services Department, Kenya Wildlife Service, Nairobi, Kenya
| | - Jonathan Arzt
- Plum Island Animal Disease Center, Foreign Animal Disease Research Unit, ARS, USDA, NY, USA
| | | | - Ethan Hartwig
- Plum Island Animal Disease Center, Foreign Animal Disease Research Unit, ARS, USDA, NY, USA
| | - Steven Pauszek
- Plum Island Animal Disease Center, Foreign Animal Disease Research Unit, ARS, USDA, NY, USA
| | - George Smoliga
- Plum Island Animal Disease Center, Foreign Animal Disease Research Unit, ARS, USDA, NY, USA
| | - Barbara Brito
- Plum Island Animal Disease Center, Foreign Animal Disease Research Unit, ARS, USDA, NY, USA
| | - Andres Perez
- Department of Veterinary Population Medicine, College of Veterinary Medicine, University of Minnesota, St. Paul, MN, USA
| | - Vincent Obanda
- Veterinary Services Department, Kenya Wildlife Service, Nairobi, Kenya
| | - Kimberly VanderWaal
- Department of Veterinary Population Medicine, College of Veterinary Medicine, University of Minnesota, St. Paul, MN, USA
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7
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Jara M, Frias-De-Diego A, Machado G. Phylogeography of Equine Infectious Anemia Virus. Front Ecol Evol 2020. [DOI: 10.3389/fevo.2020.00127] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022] Open
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8
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Alkhamis MA, Li C, Torremorell M. Animal Disease Surveillance in the 21st Century: Applications and Robustness of Phylodynamic Methods in Recent U.S. Human-Like H3 Swine Influenza Outbreaks. Front Vet Sci 2020; 7:176. [PMID: 32373634 PMCID: PMC7186338 DOI: 10.3389/fvets.2020.00176] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2019] [Accepted: 03/16/2020] [Indexed: 11/22/2022] Open
Abstract
Emerging and endemic animal viral diseases continue to impose substantial impacts on animal and human health. Most current and past molecular surveillance studies of animal diseases investigated spatio-temporal and evolutionary dynamics of the viruses in a disjointed analytical framework, ignoring many uncertainties and made joint conclusions from both analytical approaches. Phylodynamic methods offer a uniquely integrated platform capable of inferring complex epidemiological and evolutionary processes from the phylogeny of viruses in populations using a single Bayesian statistical framework. In this study, we reviewed and outlined basic concepts and aspects of phylodynamic methods and attempted to summarize essential components of the methodology in one analytical pipeline to facilitate the proper use of the methods by animal health researchers. Also, we challenged the robustness of the posterior evolutionary parameters, inferred by the commonly used phylodynamic models, using hemagglutinin (HA) and polymerase basic 2 (PB2) segments of the currently circulating human-like H3 swine influenza (SI) viruses isolated in the United States and multiple priors. Subsequently, we compared similarities and differences between the posterior parameters inferred from sequence data using multiple phylodynamic models. Our suggested phylodynamic approach attempts to reduce the impact of its inherent limitations to offer less biased and biologically plausible inferences about the pathogen evolutionary characteristics to properly guide intervention activities. We also pinpointed requirements and challenges for integrating phylodynamic methods in routine animal disease surveillance activities.
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Affiliation(s)
- Moh A Alkhamis
- Department of Epidemiology and Biostatistics, Faculty of Public Health, Health Sciences Center, Kuwait University, Kuwait City, Kuwait.,Department of Veterinary Population Medicine, College of Veterinary Medicine, University of Minnesota, St. Paul, MN, United States
| | - Chong Li
- Department of Veterinary Population Medicine, College of Veterinary Medicine, University of Minnesota, St. Paul, MN, United States
| | - Montserrat Torremorell
- Department of Veterinary Population Medicine, College of Veterinary Medicine, University of Minnesota, St. Paul, MN, United States
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9
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Stenfeldt C, Arzt J. The Carrier Conundrum; A Review of Recent Advances and Persistent Gaps Regarding the Carrier State of Foot-and-Mouth Disease Virus. Pathogens 2020; 9:E167. [PMID: 32121072 PMCID: PMC7157498 DOI: 10.3390/pathogens9030167] [Citation(s) in RCA: 32] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2020] [Revised: 02/25/2020] [Accepted: 02/25/2020] [Indexed: 12/12/2022] Open
Abstract
The existence of a prolonged, subclinical phase of foot-and-mouth disease virus (FMDV) infection in cattle was first recognized in the 1950s. Since then, the FMDV carrier state has been a subject of controversy amongst scientists and policymakers. A fundamental conundrum remains in the discordance between the detection of infectious FMDV in carriers and the apparent lack of contagiousness to in-contact animals. Although substantial progress has been made in elucidating the causal mechanisms of persistent FMDV infection, there are still critical knowledge gaps that need to be addressed in order to elucidate, predict, prevent, and model the risks associated with the carrier state. This is further complicated by the occurrence of a distinct form of neoteric subclinical infection, which is indistinguishable from the carrier state in field scenarios, but may have substantially different epidemiological properties. This review summarizes the current state of knowledge of the FMDV carrier state and identifies specific areas of research in need of further attention. Findings from experimental investigations of FMDV pathogenesis are discussed in relation to experience gained from field studies of foot-and-mouth disease.
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Affiliation(s)
- Carolina Stenfeldt
- Foreign Animal Disease Research Unit, Agricultural Research Service, US Department of Agriculture, Plum Island animal Disease Center, Orient, NY 11957, USA
- Department of Diagnostic Medicine/Pathobiology, Kansas State University, Manhattan, KS 66506, USA
| | - Jonathan Arzt
- Foreign Animal Disease Research Unit, Agricultural Research Service, US Department of Agriculture, Plum Island animal Disease Center, Orient, NY 11957, USA
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10
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The Effect of Sample Bias and Experimental Artefacts on the Statistical Phylogenetic Analysis of Picornaviruses. Viruses 2019; 11:v11111032. [PMID: 31698764 PMCID: PMC6893659 DOI: 10.3390/v11111032] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2019] [Revised: 11/04/2019] [Accepted: 11/04/2019] [Indexed: 12/05/2022] Open
Abstract
Statistical phylogenetic methods are a powerful tool for inferring the evolutionary history of viruses through time and space. The selection of mathematical models and analysis parameters has a major impact on the outcome, and has been relatively well-described in the literature. The preparation of a sequence dataset is less formalized, but its impact can be even more profound. This article used simulated datasets of enterovirus sequences to evaluate the effect of sample bias on picornavirus phylogenetic studies. Possible approaches to the reduction of large datasets and their potential for introducing additional artefacts were demonstrated. The most consistent results were obtained using “smart sampling”, which reduced sequence subsets from large studies more than those from smaller ones in order to preserve the rare sequences in a dataset. The effect of sequences with technical or annotation errors in the Bayesian framework was also analyzed. Sequences with about 0.5% sequencing errors or incorrect isolation dates altered by just 5 years could be detected by various approaches, but the efficiency of identification depended upon sequence position in a phylogenetic tree. Even a single erroneous sequence could profoundly destabilize the whole analysis by increasing the variance of the inferred evolutionary parameters.
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11
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Munsey A, Mwiine FN, Ochwo S, Velazquez-Salinas L, Ahmed Z, Maree F, Rodriguez LL, Rieder E, Perez A, VanderWaal K. Spatial distribution and risk factors for foot and mouth disease virus in Uganda: Opportunities for strategic surveillance. Prev Vet Med 2019; 171:104766. [PMID: 31541845 DOI: 10.1016/j.prevetmed.2019.104766] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2019] [Revised: 07/23/2019] [Accepted: 08/31/2019] [Indexed: 12/22/2022]
Abstract
Foot-and-mouth disease virus (FMDV) has a substantial impact on cattle populations in Uganda, causing short- and long-term production losses and hampering local and international trade. Although FMDV has persisted in Uganda for at least 60 years, its epidemiology there and in other endemic settings remains poorly understood. Here, we utilized a large-scale cross-sectional study of cattle to elucidate the dynamics of FMDV spread in Uganda. Sera samples (n = 14,439) from 211 herds were analyzed for non-structural protein reactivity, an indication of past FMDV exposure. Serological results were used to determine spatial patterns, and a Bayesian multivariable logistic regression mixed model was used to identify risk factors for FMDV infection. Spatial clustering of the disease was evident, with higher risk demonstrated near international borders. Additionally, high cattle density, low annual rainfall, and pastoralism were associated with increased likelihood of FMD seropositivity. These results provide insights into the complex epidemiology of FMDV in Uganda and will help inform refined control strategies in Uganda and other FMDV-endemic settings.
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Affiliation(s)
- Anna Munsey
- University of Minnesota College of Veterinary Medicine, 222 Veterinary Medical Center, 1365 Gortner Avenue, St. Paul, Minnesota, 55418, USA
| | - Frank Norbert Mwiine
- Makerere University College of Veterinary Medicine, Animal Resources and Biosecurity (COVAB), Makerere Hill Road, P.O. Box 7062, Kampala, Uganda
| | - Sylvester Ochwo
- Makerere University College of Veterinary Medicine, Animal Resources and Biosecurity (COVAB), Makerere Hill Road, P.O. Box 7062, Kampala, Uganda
| | - Lauro Velazquez-Salinas
- Agricultural Research Service (ARS), Foreign Animal Disease Research Unit, United States Department of Agriculture, Plum Island Animal Disease Center, P.O. Box 848, Greenport, NY, 11948, USA
| | - Zaheer Ahmed
- Animal and Plant Health Inspection Services (APHIS), National Veterinary Services Laboratories, Foreign Animal Disease Diagnostic Lab, United States Department of Agriculture, Plum Island Animal Disease Center, P.O. Box 848, Greenport, NY, 11948, USA
| | - Francois Maree
- Onderstepoort Veterinary Institute, 100 Soutpan Road, Pretoria, 0002, South Africa
| | - Luis L Rodriguez
- Agricultural Research Service (ARS), Foreign Animal Disease Research Unit, United States Department of Agriculture, Plum Island Animal Disease Center, P.O. Box 848, Greenport, NY, 11948, USA
| | - Elizabeth Rieder
- Agricultural Research Service (ARS), Foreign Animal Disease Research Unit, United States Department of Agriculture, Plum Island Animal Disease Center, P.O. Box 848, Greenport, NY, 11948, USA
| | - Andres Perez
- University of Minnesota College of Veterinary Medicine, 222 Veterinary Medical Center, 1365 Gortner Avenue, St. Paul, Minnesota, 55418, USA
| | - Kimberly VanderWaal
- University of Minnesota College of Veterinary Medicine, 222 Veterinary Medical Center, 1365 Gortner Avenue, St. Paul, Minnesota, 55418, USA.
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