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Neupane S, Davis T, Nayduch D, McGregor BL. Habitat type and host grazing regimen influence the soil microbial diversity and communities within potential biting midge larval habitats. ENVIRONMENTAL MICROBIOME 2023; 18:5. [PMID: 36658608 PMCID: PMC9854200 DOI: 10.1186/s40793-022-00456-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/13/2022] [Accepted: 12/14/2022] [Indexed: 05/28/2023]
Abstract
BACKGROUND Biting midges (Culicoides spp.) are important vectors of diverse microbes such as viruses, protozoa, and nematodes that cause diseases in wild and domestic animals. However, little is known about the role of microbial communities in midge larval habitat utilization in the wild. In this study, we characterized microbial communities (bacterial, protistan, fungal and metazoan) in soils from disturbed (bison and cattle grazed) and undisturbed (non-grazed) pond and spring potential midge larval habitats. We evaluated the influence of habitat and grazing disturbance and their interaction on microbial communities, diversity, presence of midges, and soil properties. RESULTS Bacterial, protistan, fungal and metazoan community compositions were significantly influenced by habitat and grazing type. Irrespective of habitat and grazing type, soil communities were dominated by phyla Acidobacteria, Actinobacteria, Bacteroidetes, Chloroflexi, Firmicutes, Proteobacteria (Bacteria); Apicomplexa, Cercozoa, Ciliophora, Ochrophyta (Protists); Chytridiomycota, Cryptomycota (Fungi) and Nematoda, Arthropoda (Metazoa). The relative abundance of Acidobacteria, Actinobacteria, Bacteroidetes, Chloroflexi, Firmicutes, Proteobacteria, Verrucomicrobia (Bacteria); Apicomplexa, Lobosa (Protists); Ascomycota, Blastomycotina, Cryptomycota (Fungi); and Platyhelminthes (Metazoa) were significantly affected by grazing type. Of note, midge prevalence was higher in grazed sites (67-100%) than non-grazed (25%). Presence of midges in the soil was negatively correlated with bacterial, protistan, fungal and metazoan beta diversities and metazoan species richness but positively correlated with protistan and fungal species richness. Moreover, total carbon (TC), nitrogen (TN) and organic matter (OM) were negatively correlated with the presence of midges and relative abundances of unclassified Solirubrobacterales (Bacteria) and Chlamydomonadales (Protists) but positively with Proteobacteria and unclassified Burkholderiales (Bacteria). CONCLUSIONS Habitat and grazing type shaped the soil bacterial, protistan, fungal and metazoan communities, their compositions and diversities, as well as presence of midges. Soil properties (TN, TC, OM) also influenced soil microbial communities, diversities and the presence of midges. Prevalence of midges mainly in grazed sites indicates that midges prefer to breed and shelter in a habitat with abundant hosts, probably due to greater accessibility of food (blood meals). These results provide a first glimpse into the microbial communities, soil properties and prevalence of midges in suspected midge larval habitats at a protected natural prairie site.
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Affiliation(s)
- Saraswoti Neupane
- Department of Entomology, Kansas State University, Manhattan, KS 66506 USA
| | - Travis Davis
- Arthropod-Borne Animal Diseases Research Unit, USDA-ARS, Center for Grain and Animal Health Research, Manhattan, KS 66502 USA
| | - Dana Nayduch
- Arthropod-Borne Animal Diseases Research Unit, USDA-ARS, Center for Grain and Animal Health Research, Manhattan, KS 66502 USA
| | - Bethany L. McGregor
- Arthropod-Borne Animal Diseases Research Unit, USDA-ARS, Center for Grain and Animal Health Research, Manhattan, KS 66502 USA
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Möhlmann TWR, Ter Braak CJF, Te Beest DE, Hendriks M, Nijhuis EH, Warris S, Drolet BS, van Overbeek L, Koenraadt CJM. Species Identity, Life History, and Geographic Distance Influence Gut Bacterial Communities in Lab-Reared and European Field-Collected Culicoides Biting midges. MICROBIAL ECOLOGY 2022; 84:267-284. [PMID: 34436640 PMCID: PMC9250918 DOI: 10.1007/s00248-021-01822-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/28/2021] [Accepted: 07/14/2021] [Indexed: 05/06/2023]
Abstract
Bacteria are part of the insect gut system and influence many physiological traits of their host. Gut bacteria may even reduce or block the transmission of arboviruses in several species of arthropod vectors. Culicoides biting midges are important arboviral vectors of several livestock and wildlife diseases, yet limited information is available on their gut bacterial communities. Addressing this gap will help inform how these communities can be manipulated and ultimately used as novel tools to control pathogens. To assess how bacterial communities change during the life stages of lab-reared C. nubeculosus and C. sonorensis, endosymbiotic bacteria were identified using Illumina sequencing of 16S rRNA and taxonomically characterised. Analyses were conducted to determine how gut bacterial communities in adults are influenced by species identity and geographic distance among biting midge populations. Communities of the two lab-reared Culicoides species significantly changed after pupation and with maturation into 6-day-old adults. Pseudomonas, Burkholderiaceae and Leucobacter bacteria were part of a core community that was trans-stadially transmitted and found throughout their life cycle. Among field-collected biting midges, the bacterial communities were unique for almost each species. Cardinium, Rickettsia and Wolbachia were some of the most abundant bacteria in midges collected from wetlands. Only Pseudomonas was present in high relative abundance in all field-collected species. In this study, species identity, as well as geographic distance, influenced the gut bacterial communities and may partly explain known inter- and intra-species variability in vector competence. Additionally, stably associated bacterial species could be candidates for paratransgenic strategies to control vector-borne pathogens.
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Affiliation(s)
- Tim W R Möhlmann
- Laboratory of Entomology, Wageningen University & Research, P.O. Box 16, 6700 AA, Wageningen, The Netherlands
| | - Cajo J F Ter Braak
- Biometris, Wageningen University & Research, P.O. Box 16, 6700 AA, Wageningen, The Netherlands
| | - Dennis E Te Beest
- Biometris, Wageningen University & Research, P.O. Box 16, 6700 AA, Wageningen, The Netherlands
| | - Marc Hendriks
- Biointeractions and Plant Health, Wageningen University & Research, P.O. Box 16, 6700 AA, Wageningen, The Netherlands
| | - Els H Nijhuis
- Biointeractions and Plant Health, Wageningen University & Research, P.O. Box 16, 6700 AA, Wageningen, The Netherlands
| | - Sven Warris
- Bioscience, Wageningen University & Research, P.O. Box 16, 6700 AA, Wageningen, The Netherlands
| | - Barbara S Drolet
- Agricultural Research Service, Arthropod-Borne Animal Diseases Research Unit, USDA, 1515 College Ave, Manhattan, KS, USA
| | - Leo van Overbeek
- Biointeractions and Plant Health, Wageningen University & Research, P.O. Box 16, 6700 AA, Wageningen, The Netherlands
| | - Constantianus J M Koenraadt
- Laboratory of Entomology, Wageningen University & Research, P.O. Box 16, 6700 AA, Wageningen, The Netherlands.
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Mignotte A, Garros C, Gardès L, Balenghien T, Duhayon M, Rakotoarivony I, Tabourin L, Poujol L, Mathieu B, Ibañez-Justicia A, Deniz A, Cvetkovikj A, Purse BV, Ramilo DW, Stougiou D, Werner D, Pudar D, Petrić D, Veronesi E, Jacobs F, Kampen H, Pereira da Fonseca I, Lucientes J, Navarro J, de la Puente JM, Stefanovska J, Searle KR, Khallaayoune K, Culverwell CL, Larska M, Bourquia M, Goffredo M, Bisia M, England M, Robin M, Quaglia M, Miranda-Chueca MÁ, Bødker R, Estrada-Peña R, Carpenter S, Tchakarova S, Boutsini S, Sviland S, Schäfer SM, Ozoliņa Z, Segliņa Z, Vatansever Z, Huber K. The tree that hides the forest: cryptic diversity and phylogenetic relationships in the Palaearctic vector Obsoletus/Scoticus Complex (Diptera: Ceratopogonidae) at the European level. Parasit Vectors 2020; 13:265. [PMID: 32434592 PMCID: PMC7238629 DOI: 10.1186/s13071-020-04114-1] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2020] [Accepted: 04/29/2020] [Indexed: 11/27/2022] Open
Abstract
Background Culicoides obsoletus is an abundant and widely distributed Holarctic biting midge species, involved in the transmission of bluetongue virus (BTV) and Schmallenberg virus (SBV) to wild and domestic ruminants. Females of this vector species are often reported jointly with two morphologically very close species, C. scoticus and C. montanus, forming the Obsoletus/Scoticus Complex. Recently, cryptic diversity within C. obsoletus was reported in geographically distant sites. Clear delineation of species and characterization of genetic variability is mandatory to revise their taxonomic status and assess the vector role of each taxonomic entity. Our objectives were to characterize and map the cryptic diversity within the Obsoletus/Scoticus Complex. Methods Portion of the cox1 mitochondrial gene of 3763 individuals belonging to the Obsoletus/Scoticus Complex was sequenced. Populations from 20 countries along a Palaearctic Mediterranean transect covering Scandinavia to Canary islands (North to South) and Canary islands to Turkey (West to East) were included. Genetic diversity based on cox1 barcoding was supported by 16S rDNA mitochondrial gene sequences and a gene coding for ribosomal 28S rDNA. Species delimitation using a multi-marker methodology was used to revise the current taxonomic scheme of the Obsoletus/Scoticus Complex. Results Our analysis showed the existence of three phylogenetic clades (C. obsoletus clade O2, C. obsoletus clade dark and one not yet named and identified) within C. obsoletus. These analyses also revealed two intra-specific clades within C. scoticus and raised questions about the taxonomic status of C. montanus. Conclusions To our knowledge, our study provides the first genetic characterization of the Obsoletus/Scoticus Complex on a large geographical scale and allows a revision of the current taxonomic classification for an important group of vector species of livestock viruses in the Palaearctic region.![]()
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Affiliation(s)
- Antoine Mignotte
- ASTRE, Univ Montpellier, Cirad, INRAE, Montpellier, France. .,Cirad, UMR ASTRE, 34398, Montpellier, France.
| | - Claire Garros
- ASTRE, Univ Montpellier, Cirad, INRAE, Montpellier, France. .,Cirad, UMR ASTRE, 34398, Montpellier, France.
| | - Laetitia Gardès
- ASTRE, Univ Montpellier, Cirad, INRAE, Montpellier, France.,Cirad, UMR ASTRE, 97170, Petit-Bourg, Guadeloupe, France
| | - Thomas Balenghien
- ASTRE, Univ Montpellier, Cirad, INRAE, Montpellier, France.,Cirad, UMR ASTRE, 34398, Montpellier, France.,Institut Agronomique et Vétérinaire Hassan II, Unité Parasitologie et Maladies Parasitaires, 10100, Rabat, Morocco
| | - Maxime Duhayon
- ASTRE, Univ Montpellier, Cirad, INRAE, Montpellier, France.,Cirad, UMR ASTRE, 34398, Montpellier, France
| | - Ignace Rakotoarivony
- ASTRE, Univ Montpellier, Cirad, INRAE, Montpellier, France.,Cirad, UMR ASTRE, 34398, Montpellier, France
| | - Laura Tabourin
- ASTRE, Univ Montpellier, Cirad, INRAE, Montpellier, France.,Cirad, UMR ASTRE, 34398, Montpellier, France
| | - Léa Poujol
- ASTRE, Univ Montpellier, Cirad, INRAE, Montpellier, France.,Cirad, UMR ASTRE, 34398, Montpellier, France
| | - Bruno Mathieu
- Institute of Parasitology and Tropical Pathology of Strasbourg, Université de Strasbourg, DIHP UR 7292, 67000, Strasbourg, France
| | - Adolfo Ibañez-Justicia
- Centre for Monitoring of Vectors, National Reference Centre, Netherlands Food and Consumer Product Safety Authority, Wageningen, The Netherlands
| | - Ahmet Deniz
- Veterinary Control Central Research Institute, Ankara, Turkey
| | - Aleksandar Cvetkovikj
- Department of Parasitology and Parasitic Diseases, Faculty of Veterinary Medicine, Ss. Cyril and Methodius University in Skopje, Skopje, Republic of North Macedonia
| | - Bethan V Purse
- Centre for Ecology, Centre for Ecology & Hydrology, Wallingford, OX10 8BB, UK
| | - David W Ramilo
- CIISA-Centro de Investigação Interdisciplinar em Sanidade Animal, Faculdade de Medicina Veterinária, Universidade de Lisboa, Avenida da Universidade Técnica, 1300-477, Lisboa, Portugal
| | - Despoina Stougiou
- Department of Parasitology-Parasitic Diseases, Entomology & Bee Health, Veterinary Centre of Athens, Athens, Greece
| | - Doreen Werner
- Leibniz-Centre for Agricultural Landscape Research, Müncheberg, Germany
| | - Dubravka Pudar
- Faculty of Agriculture, University of Novi Sad, Novi Sad, Serbia
| | - Dušan Petrić
- Faculty of Agriculture, University of Novi Sad, Novi Sad, Serbia
| | - Eva Veronesi
- National Centre for Vector Entomology, Institute of Parasitology, University of Zürich, Zürich, Switzerland
| | - Frans Jacobs
- Centre for Monitoring of Vectors, National Reference Centre, Netherlands Food and Consumer Product Safety Authority, Wageningen, The Netherlands
| | - Helge Kampen
- Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Greifswald, Germany
| | - Isabel Pereira da Fonseca
- CIISA-Centro de Investigação Interdisciplinar em Sanidade Animal, Faculdade de Medicina Veterinária, Universidade de Lisboa, Avenida da Universidade Técnica, 1300-477, Lisboa, Portugal
| | - Javier Lucientes
- Department of Animal Pathology, AgriFood Institute of Aragón (IA2) Veterinary Faculty, 50013, Zaragoza, Spain
| | - Javier Navarro
- Departamento de Microbiología, Laboratorio de Producción y Sanidad Animal de Granada, Junta de Andalucía, Granada, Spain
| | - Josue Martinez de la Puente
- Doñana Biological Station, CSIC, Sevilla, Spain.,Centro de Investigación Biomédica en Red de Epidemiología y Salud Pública (CIBERESP), Madrid, Spain
| | - Jovana Stefanovska
- Department of Parasitology and Parasitic Diseases, Faculty of Veterinary Medicine, Ss. Cyril and Methodius University in Skopje, Skopje, Republic of North Macedonia
| | - Kate R Searle
- Centre for Ecology & Hydrology, Edinburgh, OX10 8BB, UK
| | - Khalid Khallaayoune
- Institut Agronomique et Vétérinaire Hassan II, Unité Parasitologie et Maladies Parasitaires, 10100, Rabat, Morocco
| | - C Lorna Culverwell
- Department of Virology, University of Helsinki, Medicum, Haartmaninkatu 3, Helsinki, 00014, Finland
| | | | - Maria Bourquia
- Cirad, UMR ASTRE, 34398, Montpellier, France.,Institut Agronomique et Vétérinaire Hassan II, Unité Parasitologie et Maladies Parasitaires, 10100, Rabat, Morocco
| | - Maria Goffredo
- Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise 'G. Caporale', Campo Boario, 64100, Teramo, Italy
| | - Marina Bisia
- Department of Parasitology-Parasitic Diseases, Entomology & Bee Health, Veterinary Centre of Athens, Athens, Greece
| | | | - Matthew Robin
- Department of Epidemiology and Population Health, Institute of Infection and Global Health, University of Liverpool, Leahurst, Chester High Road, Neston, Cheshire, CH64 7TE, UK
| | - Michela Quaglia
- Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise 'G. Caporale', Campo Boario, 64100, Teramo, Italy
| | - Miguel Ángel Miranda-Chueca
- Applied Zoology and Animal Conservation Research Group, University of the Balearic Islands UIB, Palma, Spain
| | - René Bødker
- University of Copenhagen, Copenhagen, Denmark
| | - Rosa Estrada-Peña
- Department of Animal Pathology, AgriFood Institute of Aragón (IA2) Veterinary Faculty, 50013, Zaragoza, Spain
| | | | - Simona Tchakarova
- National Diagnostic and Research Veterinary Medical Institute, Sofia, Bulgaria
| | - Sofia Boutsini
- Department of Parasitology-Parasitic Diseases, Entomology & Bee Health, Veterinary Centre of Athens, Athens, Greece
| | | | - Stefanie M Schäfer
- Centre for Ecology, Centre for Ecology & Hydrology, Wallingford, OX10 8BB, UK
| | - Zanda Ozoliņa
- Institute of Food safety, Animal Health and Environment 'BIOR', Riga, Latvia
| | - Zanda Segliņa
- Institute of Food safety, Animal Health and Environment 'BIOR', Riga, Latvia
| | - Zati Vatansever
- Veterinary Control Central Research Institute, Ankara, Turkey
| | - Karine Huber
- ASTRE, Univ Montpellier, Cirad, INRAE, Montpellier, France
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