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For: Sun J, Qian Q, Ma DR, Xu ZJ, Liu D, Du HB, Chen WF. Introgression and selection shaping the genome and adaptive loci of weedy rice in northern China. New Phytol 2013;197:290-299. [PMID: 23106357 DOI: 10.1111/nph.12012] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/16/2012] [Accepted: 09/20/2012] [Indexed: 06/01/2023]
Number Cited by Other Article(s)
1
Bhupenchandra I, Chongtham SK, Gangarani Devi A, Dutta P, Lamalakshmi E, Mohanty S, Choudhary AK, Das A, Sarika K, Kumar S, Yumnam S, Sagolsem D, Rupert Anand Y, Bhutia DD, Victoria M, Vinodh S, Tania C, Dhanachandra Sharma A, Deb L, Sahoo MR, Seth CS, Swapnil P, Meena M. Harnessing weedy rice as functional food and source of novel traits for crop improvement. PLANT, CELL & ENVIRONMENT 2025;48:2498-2521. [PMID: 38436101 DOI: 10.1111/pce.14868] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2023] [Revised: 02/12/2024] [Accepted: 02/15/2024] [Indexed: 03/05/2024]
2
Cai XX, Wang Z, Yuan Y, Pang LH, Wang Y, Lu BR. Crop-Weed Introgression Plays Critical Roles in Genetic Differentiation and Diversity of Weedy Rice: A Case Study of Human-Influenced Weed Evolution. BIOLOGY 2023;12:biology12050744. [PMID: 37237556 DOI: 10.3390/biology12050744] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/23/2023] [Revised: 05/15/2023] [Accepted: 05/16/2023] [Indexed: 05/28/2023]
3
Wang W, Huang R, Wu G, Sun J, Zhu Y, Wang H. Transcriptomic and QTL Analysis of Seed Germination Vigor under Low Temperature in Weedy Rice WR04-6. PLANTS (BASEL, SWITZERLAND) 2023;12:871. [PMID: 36840221 PMCID: PMC9961040 DOI: 10.3390/plants12040871] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/17/2023] [Revised: 02/10/2023] [Accepted: 02/13/2023] [Indexed: 06/18/2023]
4
Li Z, Gui R, Yu X, Liang C, Cui J, Zhao X, Zhang X, Yu P, Chen W, Sun J. Genetic basis of the early heading of high-latitude weedy rice. FRONTIERS IN PLANT SCIENCE 2022;13:1059197. [PMID: 36544870 PMCID: PMC9760980 DOI: 10.3389/fpls.2022.1059197] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/01/2022] [Accepted: 11/11/2022] [Indexed: 06/17/2023]
5
Wu Y, Sun J, Yu P, Zhang W, Lin Y, Ma D. The rhizosphere bacterial community contributes to the nutritional competitive advantage of weedy rice over cultivated rice in paddy soil. BMC Microbiol 2022;22:232. [PMID: 36180838 PMCID: PMC9523940 DOI: 10.1186/s12866-022-02648-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2022] [Accepted: 09/22/2022] [Indexed: 11/18/2022]  Open
6
Han B, Cui D, Ma X, Cao G, Zhang H, Koh HJ, Han L. Evidence for evolution and selection of drought-resistant genes based on high-throughput resequencing in weedy rice. JOURNAL OF EXPERIMENTAL BOTANY 2022;73:1949-1962. [PMID: 35179195 DOI: 10.1093/jxb/erab515] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/20/2021] [Accepted: 11/27/2021] [Indexed: 06/14/2023]
7
Li F, Han Z, Qiao W, Wang J, Song Y, Cui Y, Li J, Ge J, Lou D, Fan W, Li D, Nong B, Zhang Z, Cheng Y, Zhang L, Zheng X, Yang Q. High-Quality Genomes and High-Density Genetic Map Facilitate the Identification of Genes From a Weedy Rice. FRONTIERS IN PLANT SCIENCE 2021;12:775051. [PMID: 34868173 PMCID: PMC8639688 DOI: 10.3389/fpls.2021.775051] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/13/2021] [Accepted: 10/27/2021] [Indexed: 06/13/2023]
8
Key Roles of De-Domestication and Novel Mutation in Origin and Diversification of Global Weedy Rice. BIOLOGY 2021;10:biology10090828. [PMID: 34571705 PMCID: PMC8472751 DOI: 10.3390/biology10090828] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/30/2021] [Revised: 08/16/2021] [Accepted: 08/17/2021] [Indexed: 11/17/2022]
9
Zhang G, Liu Y, Gui R, Wang Z, Li Z, Han Y, Guo X, Sun J. Comparative multi-omics analysis of hypoxic germination tolerance in weedy rice embryos and coleoptiles. Genomics 2021;113:3337-3348. [PMID: 34298069 DOI: 10.1016/j.ygeno.2021.07.021] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2021] [Revised: 06/04/2021] [Accepted: 07/17/2021] [Indexed: 10/20/2022]
10
Wu CC, Wei FJ, Chiou WY, Tsai YC, Wu HP, Gotarkar D, Wei ZH, Lai MH, Hsing YIC. Studies of rice Hd1 haplotypes worldwide reveal adaptation of flowering time to different environments. PLoS One 2020;15:e0239028. [PMID: 32941524 PMCID: PMC7498076 DOI: 10.1371/journal.pone.0239028] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2020] [Accepted: 08/29/2020] [Indexed: 11/30/2022]  Open
11
Wang W, Zhao M, Zhang G, Liu Z, Hua Y, Jia X, Song J, Ma D, Sun J. Weedy Rice as a Novel Gene Resource: A Genome-Wide Association Study of Anthocyanin Biosynthesis and an Evaluation of Nutritional Quality. FRONTIERS IN PLANT SCIENCE 2020;11:878. [PMID: 32595693 PMCID: PMC7300295 DOI: 10.3389/fpls.2020.00878] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2020] [Accepted: 05/28/2020] [Indexed: 05/24/2023]
12
Mohd Hanafiah N, Mispan MS, Lim PE, Baisakh N, Cheng A. The 21st Century Agriculture: When Rice Research Draws Attention to Climate Variability and How Weedy Rice and Underutilized Grains Come in Handy. PLANTS (BASEL, SWITZERLAND) 2020;9:E365. [PMID: 32188108 PMCID: PMC7154822 DOI: 10.3390/plants9030365] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/15/2020] [Revised: 03/10/2020] [Accepted: 03/13/2020] [Indexed: 12/11/2022]
13
Han B, Ma X, Cui D, Wang Y, Geng L, Cao G, Zhang H, Koh H, Han L. Analysis of evolutionary relationships provides new clues to the origins of weedy rice. Ecol Evol 2020;10:891-900. [PMID: 32015852 PMCID: PMC6988545 DOI: 10.1002/ece3.5948] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2019] [Revised: 11/27/2019] [Accepted: 11/28/2019] [Indexed: 11/18/2022]  Open
14
Xie H, Han Y, Li X, Dai W, Song X, Olsen KM, Qiang S. Climate‐dependent variation in cold tolerance of weedy rice and rice mediated by OsICE1 promoter methylation. Mol Ecol 2019;29:121-137. [DOI: 10.1111/mec.15305] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2018] [Revised: 10/23/2019] [Accepted: 10/28/2019] [Indexed: 12/27/2022]
15
Guo S, Zhao S, Sun H, Wang X, Wu S, Lin T, Ren Y, Gao L, Deng Y, Zhang J, Lu X, Zhang H, Shang J, Gong G, Wen C, He N, Tian S, Li M, Liu J, Wang Y, Zhu Y, Jarret R, Levi A, Zhang X, Huang S, Fei Z, Liu W, Xu Y. Resequencing of 414 cultivated and wild watermelon accessions identifies selection for fruit quality traits. Nat Genet 2019;51:1616-1623. [PMID: 31676863 DOI: 10.1038/s41588-019-0518-4] [Citation(s) in RCA: 165] [Impact Index Per Article: 27.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2019] [Accepted: 09/23/2019] [Indexed: 12/31/2022]
16
When West Meets East: The Origins and Spread of Weedy Rice Between Continental and Island Southeast Asia. G3-GENES GENOMES GENETICS 2019;9:2941-2950. [PMID: 31292156 PMCID: PMC6723143 DOI: 10.1534/g3.119.400021] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
17
Donde R, Kumar J, Gouda G, Gupta MK, Mukherjee M, Baksh SY, Mahadani P, Sahoo KK, Behera L, Dash SK. Assessment of Genetic Diversity of Drought Tolerant and Susceptible Rice Genotypes Using Microsatellite Markers. RICE SCIENCE 2019;26:239-247. [DOI: 10.1016/j.rsci.2019.01.004] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/06/2023]
18
Discordant Patterns of Introgression Suggest Historical Gene Flow into Thai Weedy Rice from Domesticated and Wild Relatives. J Hered 2019;110:601-609. [DOI: 10.1093/jhered/esz030] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2019] [Accepted: 05/04/2019] [Indexed: 12/12/2022]  Open
19
Sun J, Ma D, Tang L, Zhao M, Zhang G, Wang W, Song J, Li X, Liu Z, Zhang W, Xu Q, Zhou Y, Wu J, Yamamoto T, Dai F, Lei Y, Li S, Zhou G, Zheng H, Xu Z, Chen W. Population Genomic Analysis and De Novo Assembly Reveal the Origin of Weedy Rice as an Evolutionary Game. MOLECULAR PLANT 2019;12:632-647. [PMID: 30710646 DOI: 10.1016/j.molp.2019.01.019] [Citation(s) in RCA: 41] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/07/2018] [Revised: 01/23/2019] [Accepted: 01/23/2019] [Indexed: 05/27/2023]
20
Chen E, Huang X, Tian Z, Wing RA, Han B. The Genomics of Oryza Species Provides Insights into Rice Domestication and Heterosis. ANNUAL REVIEW OF PLANT BIOLOGY 2019;70:639-665. [PMID: 31035826 DOI: 10.1146/annurev-arplant-050718-100320] [Citation(s) in RCA: 63] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
21
Chai C, Shankar R, Jain M, Subudhi PK. Genome-wide discovery of DNA polymorphisms by whole genome sequencing differentiates weedy and cultivated rice. Sci Rep 2018;8:14218. [PMID: 30242197 PMCID: PMC6155081 DOI: 10.1038/s41598-018-32513-z] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2017] [Accepted: 09/10/2018] [Indexed: 12/13/2022]  Open
22
Zhang J, Kang Y, Valverde BE, Dai W, Song X, Qiang S. Feral rice from introgression of weedy rice genes into transgenic herbicide-resistant hybrid-rice progeny. JOURNAL OF EXPERIMENTAL BOTANY 2018;69:3855-3865. [PMID: 29873749 DOI: 10.1093/jxb/ery210] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/29/2017] [Accepted: 06/04/2018] [Indexed: 06/08/2023]
23
Evolving insights on weedy rice. ACTA ACUST UNITED AC 2018. [DOI: 10.1016/j.egg.2018.03.005] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
24
Sahu PK, Mondal S, Sharma D, Vishwakarma G, Kumar V, Das BK. InDel marker based genetic differentiation and genetic diversity in traditional rice (Oryza sativa L.) landraces of Chhattisgarh, India. PLoS One 2017;12:e0188864. [PMID: 29190790 PMCID: PMC5708757 DOI: 10.1371/journal.pone.0188864] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2017] [Accepted: 11/14/2017] [Indexed: 11/28/2022]  Open
25
Qiu J, Zhou Y, Mao L, Ye C, Wang W, Zhang J, Yu Y, Fu F, Wang Y, Qian F, Qi T, Wu S, Sultana MH, Cao YN, Wang Y, Timko MP, Ge S, Fan L, Lu Y. Genomic variation associated with local adaptation of weedy rice during de-domestication. Nat Commun 2017;8:15323. [PMID: 28537247 PMCID: PMC5477509 DOI: 10.1038/ncomms15323] [Citation(s) in RCA: 88] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2016] [Accepted: 03/17/2017] [Indexed: 11/09/2022]  Open
26
Huang Z, Young ND, Reagon M, Hyma KE, Olsen KM, Jia Y, Caicedo AL. All roads lead to weediness: Patterns of genomic divergence reveal extensive recurrent weedy rice origins from South Asian Oryza. Mol Ecol 2017;26:3151-3167. [DOI: 10.1111/mec.14120] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2016] [Revised: 01/21/2017] [Accepted: 03/10/2017] [Indexed: 01/28/2023]
27
Genetic variation architecture of mitochondrial genome reveals the differentiation in Korean landrace and weedy rice. Sci Rep 2017;7:43327. [PMID: 28256554 PMCID: PMC5335689 DOI: 10.1038/srep43327] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2016] [Accepted: 01/24/2017] [Indexed: 01/09/2023]  Open
28
He Q, Kim K, Park Y. Population genomics identifies the origin and signatures of selection of Korean weedy rice. PLANT BIOTECHNOLOGY JOURNAL 2017;15:357-366. [PMID: 27589078 PMCID: PMC5316921 DOI: 10.1111/pbi.12630] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/03/2016] [Revised: 07/25/2016] [Accepted: 08/21/2016] [Indexed: 05/25/2023]
29
Zhang J, Lu Z, Dai W, Song X, Peng Y, Valverde BE, Qiang S. Cytoplasmic-genetic male sterility gene provides direct evidence for some hybrid rice recently evolving into weedy rice. Sci Rep 2015;5:10591. [PMID: 26012494 PMCID: PMC4445040 DOI: 10.1038/srep10591] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2014] [Accepted: 04/20/2015] [Indexed: 11/09/2022]  Open
30
Qiu J, Zhu J, Fu F, Ye CY, Wang W, Mao L, Lin Z, Chen L, Zhang H, Guo L, Qiang S, Lu Y, Fan L. Genome re-sequencing suggested a weedy rice origin from domesticated indica-japonica hybridization: a case study from southern China. PLANTA 2014;240:1353-1363. [PMID: 25187076 DOI: 10.1007/s00425-014-2159-2] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/06/2014] [Accepted: 08/16/2014] [Indexed: 06/03/2023]
31
Gressel J, Levy AA. Use of multicopy transposons bearing unfitness genes in weed control: four example scenarios. PLANT PHYSIOLOGY 2014;166:1221-31. [PMID: 24820021 PMCID: PMC4226382 DOI: 10.1104/pp.114.236935] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/29/2014] [Accepted: 05/09/2014] [Indexed: 05/09/2023]
32
Hovick SM, Whitney KD. Hybridisation is associated with increased fecundity and size in invasive taxa: meta-analytic support for the hybridisation-invasion hypothesis. Ecol Lett 2014;17:1464-77. [PMID: 25234578 PMCID: PMC4231983 DOI: 10.1111/ele.12355] [Citation(s) in RCA: 78] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2014] [Revised: 06/11/2014] [Accepted: 08/14/2014] [Indexed: 02/04/2023]
33
Craig SM, Reagon M, Resnick LE, Caicedo AL. Allele distributions at hybrid incompatibility loci facilitate the potential for gene flow between cultivated and weedy rice in the US. PLoS One 2014;9:e86647. [PMID: 24489758 PMCID: PMC3904945 DOI: 10.1371/journal.pone.0086647] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2013] [Accepted: 12/15/2013] [Indexed: 11/18/2022]  Open
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