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For: Gardner KA, Wittern LM, Mackay IJ. A highly recombined, high-density, eight-founder wheat MAGIC map reveals extensive segregation distortion and genomic locations of introgression segments. Plant Biotechnol J 2016;14:1406-17. [PMID: 26801965 PMCID: PMC4985697 DOI: 10.1111/pbi.12504] [Citation(s) in RCA: 61] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/06/2015] [Revised: 10/13/2015] [Accepted: 10/24/2015] [Indexed: 05/18/2023]
Number Cited by Other Article(s)
1
Fourquet L, Barber T, Campos-Mantello C, Howell P, Orman-Ligeza B, Percival-Alwyn L, Rose GA, Sheehan H, Wright TIC, Longin F, Würschum T, Novoselovic D, Greenland AJ, Mackay IJ, Cockram J, Bentley AR. An eight-founder wheat MAGIC population allows fine-mapping of flowering time loci and provides novel insights into the genetic control of flowering time. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2024;137:277. [PMID: 39576319 PMCID: PMC11584503 DOI: 10.1007/s00122-024-04787-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/13/2024] [Accepted: 11/11/2024] [Indexed: 11/24/2024]
2
Shan Y, Osborne CP. Diversification of quantitative morphological traits in wheat. ANNALS OF BOTANY 2024;133:413-426. [PMID: 38195097 PMCID: PMC11006538 DOI: 10.1093/aob/mcad202] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/27/2023] [Accepted: 01/08/2024] [Indexed: 01/11/2024]
3
Clouard C, Nettelblad C. Genotyping of SNPs in bread wheat at reduced cost from pooled experiments and imputation. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2024;137:26. [PMID: 38243086 PMCID: PMC10799138 DOI: 10.1007/s00122-023-04533-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/15/2023] [Accepted: 12/19/2023] [Indexed: 01/21/2024]
4
Jiao C, Hao C, Li T, Bohra A, Wang L, Hou J, Liu H, Liu H, Zhao J, Wang Y, Liu Y, Wang Z, Jing X, Wang X, Varshney RK, Fu J, Zhang X. Fast integration and accumulation of beneficial breeding alleles through an AB-NAMIC strategy in wheat. PLANT COMMUNICATIONS 2023;4:100549. [PMID: 36642955 DOI: 10.1016/j.xplc.2023.100549] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/07/2022] [Revised: 12/26/2022] [Accepted: 01/11/2023] [Indexed: 05/11/2023]
5
Schmidt L, Jacobs J, Schmutzer T, Alqudah AM, Sannemann W, Pillen K, Maurer A. Identifying genomic regions determining shoot and root traits related to nitrogen uptake efficiency in a multiparent advanced generation intercross (MAGIC) winter wheat population in a high-throughput phenotyping facility. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2023;330:111656. [PMID: 36841338 DOI: 10.1016/j.plantsci.2023.111656] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/01/2022] [Revised: 01/17/2023] [Accepted: 02/18/2023] [Indexed: 06/18/2023]
6
Zanella CM, Rotondo M, McCormick‐Barnes C, Mellers G, Corsi B, Berry S, Ciccone G, Day R, Faralli M, Galle A, Gardner KA, Jacobs J, Ober ES, Sánchez del Rio A, Van Rie J, Lawson T, Cockram J. Longer epidermal cells underlie a quantitative source of variation in wheat flag leaf size. THE NEW PHYTOLOGIST 2023;237:1558-1573. [PMID: 36519272 PMCID: PMC10107444 DOI: 10.1111/nph.18676] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/22/2022] [Accepted: 11/17/2022] [Indexed: 06/17/2023]
7
Wittern L, Steed G, Taylor LJ, Ramirez DC, Pingarron-Cardenas G, Gardner K, Greenland A, Hannah MA, Webb AAR. Wheat EARLY FLOWERING 3 affects heading date without disrupting circadian oscillations. PLANT PHYSIOLOGY 2023;191:1383-1403. [PMID: 36454669 PMCID: PMC9922389 DOI: 10.1093/plphys/kiac544] [Citation(s) in RCA: 11] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/23/2022] [Revised: 09/23/2022] [Accepted: 11/29/2022] [Indexed: 05/26/2023]
8
Lisker A, Maurer A, Schmutzer T, Kazman E, Cöster H, Holzapfel J, Ebmeyer E, Alqudah AM, Sannemann W, Pillen K. A Haplotype-Based GWAS Identified Trait-Improving QTL Alleles Controlling Agronomic Traits under Contrasting Nitrogen Fertilization Treatments in the MAGIC Wheat Population WM-800. PLANTS (BASEL, SWITZERLAND) 2022;11:3508. [PMID: 36559621 PMCID: PMC9784842 DOI: 10.3390/plants11243508] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/19/2022] [Revised: 11/27/2022] [Accepted: 12/07/2022] [Indexed: 06/17/2023]
9
Li W, Boer MP, van Rossum BJ, Zheng C, Joosen RVL, van Eeuwijk FA. statgenMPP: an R package implementing an IBD-based mixed model approach for QTL mapping in a wide range of multi-parent populations. Bioinformatics 2022;38:5134-5136. [PMID: 36193999 PMCID: PMC9665859 DOI: 10.1093/bioinformatics/btac662] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2022] [Revised: 08/23/2022] [Accepted: 10/03/2022] [Indexed: 12/24/2022]  Open
10
Wall S, Vialet‐Chabrand S, Davey P, Van Rie J, Galle A, Cockram J, Lawson T. Stomata on the abaxial and adaxial leaf surfaces contribute differently to leaf gas exchange and photosynthesis in wheat. THE NEW PHYTOLOGIST 2022;235:1743-1756. [PMID: 35586964 PMCID: PMC9545378 DOI: 10.1111/nph.18257] [Citation(s) in RCA: 15] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/01/2021] [Accepted: 04/06/2022] [Indexed: 05/12/2023]
11
Wittern LM, Barrero JM, Bovill WD, Verbyla KL, Hughes T, Swain SM, Steed G, Webb AAR, Gardner K, Greenland A, Jacobs J, Frohberg C, Schmidt RC, Cavanagh C, Rohde A, Davey MW, Hannah MA. Overexpression of the WAPO-A1 gene increases the number of spikelets per spike in bread wheat. Sci Rep 2022;12:14229. [PMID: 35987959 PMCID: PMC9392761 DOI: 10.1038/s41598-022-18614-w] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2022] [Accepted: 08/16/2022] [Indexed: 11/09/2022]  Open
12
Fradgley NS, Gardner K, Kerton M, Swarbreck SM, Bentley AR. Trade-offs in the genetic control of functional and nutritional quality traits in UK winter wheat. Heredity (Edinb) 2022;128:420-433. [PMID: 35393550 PMCID: PMC9178040 DOI: 10.1038/s41437-022-00503-7] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2021] [Revised: 01/18/2022] [Accepted: 01/18/2022] [Indexed: 12/15/2022]  Open
13
Shewry PR, Lovegrove A, Wingen LU, Griffiths S. Opinion Exploiting genomics to improve the benefits of wheat: Prospects and limitations. J Cereal Sci 2022;105:103444. [PMID: 35712025 PMCID: PMC9106566 DOI: 10.1016/j.jcs.2022.103444] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2021] [Revised: 02/14/2022] [Accepted: 02/25/2022] [Indexed: 11/17/2022]
14
White J, Sharma R, Balding D, Cockram J, Mackay IJ. Genome-wide association mapping of Hagberg falling number, protein content, test weight, and grain yield in U.K. wheat. CROP SCIENCE 2022;62:965-981. [PMID: 35915786 PMCID: PMC9314726 DOI: 10.1002/csc2.20692] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/29/2021] [Accepted: 12/14/2021] [Indexed: 05/12/2023]
15
Michel KJ, Lima DC, Hundley H, Singan V, Yoshinaga Y, Daum C, Barry K, Broman KW, Buell CR, de Leon N, Kaeppler SM. Genetic mapping and prediction of flowering time and plant height in a maize Stiff Stalk MAGIC population. Genetics 2022;221:6571196. [PMID: 35441688 PMCID: PMC9157087 DOI: 10.1093/genetics/iyac063] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2022] [Accepted: 04/08/2022] [Indexed: 11/12/2022]  Open
16
Ma C, Rehman A, Li HG, Zhao ZB, Sun G, Du XM. Mapping of dwarfing QTL of Ari1327, a semi-dwarf mutant of upland cotton. BMC PLANT BIOLOGY 2022;22:5. [PMID: 34979924 PMCID: PMC8722190 DOI: 10.1186/s12870-021-03359-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/15/2021] [Accepted: 11/24/2021] [Indexed: 06/14/2023]
17
Bouvet L, Percival-Alwyn L, Berry S, Fenwick P, Mantello CC, Sharma R, Holdgate S, Mackay IJ, Cockram J. Wheat genetic loci conferring resistance to stripe rust in the face of genetically diverse races of the fungus Puccinia striiformis f. sp. tritici. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2022;135:301-319. [PMID: 34837509 PMCID: PMC8741662 DOI: 10.1007/s00122-021-03967-z] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/23/2021] [Accepted: 10/05/2021] [Indexed: 05/20/2023]
18
Jan I, Saripalli G, Kumar K, Kumar A, Singh R, Batra R, Sharma PK, Balyan HS, Gupta PK. Meta-QTLs and candidate genes for stripe rust resistance in wheat. Sci Rep 2021;11:22923. [PMID: 34824302 PMCID: PMC8617266 DOI: 10.1038/s41598-021-02049-w] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2021] [Accepted: 11/02/2021] [Indexed: 11/15/2022]  Open
19
Li W, Boer MP, Zheng C, Joosen RVL, van Eeuwijk FA. An IBD-based mixed model approach for QTL mapping in multiparental populations. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2021;134:3643-3660. [PMID: 34342658 PMCID: PMC8519866 DOI: 10.1007/s00122-021-03919-7] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/18/2021] [Accepted: 07/16/2021] [Indexed: 05/16/2023]
20
Yang CJ, Edmondson RN, Piepho HP, Powell W, Mackay I. Crafting for a better MAGIC: systematic design and test for Multiparental Advanced Generation Inter-Cross population. G3 GENES|GENOMES|GENETICS 2021;11:6354367. [PMID: 34849794 PMCID: PMC8527519 DOI: 10.1093/g3journal/jkab295] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/27/2021] [Accepted: 08/15/2021] [Indexed: 12/04/2022]
21
Qu P, Wang J, Wen W, Gao F, Liu J, Xia X, Peng H, Zhang L. Construction of Consensus Genetic Map With Applications in Gene Mapping of Wheat (Triticum aestivum L.) Using 90K SNP Array. FRONTIERS IN PLANT SCIENCE 2021;12:727077. [PMID: 34512703 PMCID: PMC8424075 DOI: 10.3389/fpls.2021.727077] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/18/2021] [Accepted: 07/28/2021] [Indexed: 06/02/2023]
22
Hargreaves W, N'Daiye A, Walkowiak S, Pozniak CJ, Wiebe K, Enns J, Lukens L. The effects of crop attributes, selection, and recombination on Canadian bread wheat molecular variation. THE PLANT GENOME 2021;14:e20099. [PMID: 34009734 DOI: 10.1002/tpg2.20099] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/13/2020] [Accepted: 03/09/2021] [Indexed: 06/12/2023]
23
Wright TIC, Gardner KA, Glahn RP, Milner MJ. Genetic control of iron bioavailability is independent from iron concentration in a diverse winter wheat mapping population. BMC PLANT BIOLOGY 2021;21:212. [PMID: 33975563 PMCID: PMC8112066 DOI: 10.1186/s12870-021-02996-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/07/2021] [Accepted: 04/21/2021] [Indexed: 06/12/2023]
24
Scott MF, Fradgley N, Bentley AR, Brabbs T, Corke F, Gardner KA, Horsnell R, Howell P, Ladejobi O, Mackay IJ, Mott R, Cockram J. Limited haplotype diversity underlies polygenic trait architecture across 70 years of wheat breeding. Genome Biol 2021;22:137. [PMID: 33957956 PMCID: PMC8101041 DOI: 10.1186/s13059-021-02354-7] [Citation(s) in RCA: 25] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2020] [Accepted: 04/16/2021] [Indexed: 11/25/2022]  Open
25
Przewieslik-Allen AM, Wilkinson PA, Burridge AJ, Winfield MO, Dai X, Beaumont M, King J, Yang CY, Griffiths S, Wingen LU, Horsnell R, Bentley AR, Shewry P, Barker GLA, Edwards KJ. The role of gene flow and chromosomal instability in shaping the bread wheat genome. NATURE PLANTS 2021;7:172-183. [PMID: 33526912 DOI: 10.1038/s41477-020-00845-2] [Citation(s) in RCA: 29] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/03/2020] [Accepted: 12/18/2020] [Indexed: 05/02/2023]
26
Diouf I, Pascual L. Multiparental Population in Crops: Methods of Development and Dissection of Genetic Traits. Methods Mol Biol 2021;2264:13-32. [PMID: 33263900 DOI: 10.1007/978-1-0716-1201-9_2] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
27
Rollar S, Serfling A, Geyer M, Hartl L, Mohler V, Ordon F. QTL mapping of adult plant and seedling resistance to leaf rust (Puccinia triticina Eriks.) in a multiparent advanced generation intercross (MAGIC) wheat population. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2021;134:37-51. [PMID: 33201290 PMCID: PMC7813716 DOI: 10.1007/s00122-020-03657-2] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/16/2020] [Accepted: 07/28/2020] [Indexed: 05/22/2023]
28
Scott MF, Ladejobi O, Amer S, Bentley AR, Biernaskie J, Boden SA, Clark M, Dell'Acqua M, Dixon LE, Filippi CV, Fradgley N, Gardner KA, Mackay IJ, O'Sullivan D, Percival-Alwyn L, Roorkiwal M, Singh RK, Thudi M, Varshney RK, Venturini L, Whan A, Cockram J, Mott R. Multi-parent populations in crops: a toolbox integrating genomics and genetic mapping with breeding. Heredity (Edinb) 2020;125:396-416. [PMID: 32616877 PMCID: PMC7784848 DOI: 10.1038/s41437-020-0336-6] [Citation(s) in RCA: 91] [Impact Index Per Article: 22.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2020] [Revised: 06/16/2020] [Accepted: 06/16/2020] [Indexed: 11/21/2022]  Open
29
Riaz A, KockAppelgren P, Hehir JG, Kang J, Meade F, Cockram J, Milbourne D, Spink J, Mullins E, Byrne S. Genetic Analysis Using a Multi-Parent Wheat Population Identifies Novel Sources of Septoria Tritici Blotch Resistance. Genes (Basel) 2020;11:E887. [PMID: 32759792 PMCID: PMC7465482 DOI: 10.3390/genes11080887] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2020] [Revised: 07/31/2020] [Accepted: 07/31/2020] [Indexed: 12/12/2022]  Open
30
Shah R, Keeble-Gagnère G, Whan A. Accurate calling of homeoallelic genotypes of iSelect markers using inbred structured populations. Bioinformatics 2020;36:4240-4247. [PMID: 32374818 DOI: 10.1093/bioinformatics/btaa295] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2019] [Revised: 02/26/2020] [Accepted: 04/28/2020] [Indexed: 11/14/2022]  Open
31
Adamski NM, Borrill P, Brinton J, Harrington SA, Marchal C, Bentley AR, Bovill WD, Cattivelli L, Cockram J, Contreras-Moreira B, Ford B, Ghosh S, Harwood W, Hassani-Pak K, Hayta S, Hickey LT, Kanyuka K, King J, Maccaferrri M, Naamati G, Pozniak CJ, Ramirez-Gonzalez RH, Sansaloni C, Trevaskis B, Wingen LU, Wulff BBH, Uauy C. A roadmap for gene functional characterisation in crops with large genomes: Lessons from polyploid wheat. eLife 2020;9:e55646. [PMID: 32208137 PMCID: PMC7093151 DOI: 10.7554/elife.55646] [Citation(s) in RCA: 58] [Impact Index Per Article: 14.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2020] [Accepted: 03/12/2020] [Indexed: 02/04/2023]  Open
32
Corsi B, Percival-Alwyn L, Downie RC, Venturini L, Iagallo EM, Campos Mantello C, McCormick-Barnes C, See PT, Oliver RP, Moffat CS, Cockram J. Genetic analysis of wheat sensitivity to the ToxB fungal effector from Pyrenophora tritici-repentis, the causal agent of tan spot. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2020;133:935-950. [PMID: 31915874 PMCID: PMC7021774 DOI: 10.1007/s00122-019-03517-8] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/14/2019] [Accepted: 12/17/2019] [Indexed: 05/05/2023]
33
Lin M, Corsi B, Ficke A, Tan KC, Cockram J, Lillemo M. Genetic mapping using a wheat multi-founder population reveals a locus on chromosome 2A controlling resistance to both leaf and glume blotch caused by the necrotrophic fungal pathogen Parastagonospora nodorum. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2020;133:785-808. [PMID: 31996971 PMCID: PMC7021668 DOI: 10.1007/s00122-019-03507-w] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/03/2019] [Accepted: 12/10/2019] [Indexed: 05/19/2023]
34
Coulton A, Przewieslik-Allen AM, Burridge AJ, Shaw DS, Edwards KJ, Barker GLA. Segregation distortion: Utilizing simulated genotyping data to evaluate statistical methods. PLoS One 2020;15:e0228951. [PMID: 32074141 PMCID: PMC7029859 DOI: 10.1371/journal.pone.0228951] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2019] [Accepted: 01/26/2020] [Indexed: 11/18/2022]  Open
35
Zuo JF, Niu Y, Cheng P, Feng JY, Han SF, Zhang YH, Shu G, Wang Y, Zhang YM. Effect of marker segregation distortion on high density linkage map construction and QTL mapping in Soybean (Glycine max L.). Heredity (Edinb) 2019;123:579-592. [PMID: 31152165 PMCID: PMC6972858 DOI: 10.1038/s41437-019-0238-7] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2019] [Revised: 05/16/2019] [Accepted: 05/17/2019] [Indexed: 02/01/2023]  Open
36
Mabhaudhi T, Chimonyo VGP, Hlahla S, Massawe F, Mayes S, Nhamo L, Modi AT. Prospects of orphan crops in climate change. PLANTA 2019;250:695-708. [PMID: 30868238 PMCID: PMC6667417 DOI: 10.1007/s00425-019-03129-y] [Citation(s) in RCA: 69] [Impact Index Per Article: 13.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/04/2018] [Accepted: 02/22/2019] [Indexed: 05/22/2023]
37
Plant Genomics: Unlocking the Genome of Wheat's Progenitor. Curr Biol 2019;27:R1122-R1124. [PMID: 29065296 DOI: 10.1016/j.cub.2017.08.051] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
38
Faralli M, Cockram J, Ober E, Wall S, Galle A, Van Rie J, Raines C, Lawson T. Genotypic, Developmental and Environmental Effects on the Rapidity of gs in Wheat: Impacts on Carbon Gain and Water-Use Efficiency. FRONTIERS IN PLANT SCIENCE 2019;10:492. [PMID: 31057590 PMCID: PMC6479173 DOI: 10.3389/fpls.2019.00492] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/07/2018] [Accepted: 04/01/2019] [Indexed: 05/20/2023]
39
Scheben A, Verpaalen B, Lawley CT, Chan CKK, Bayer PE, Batley J, Edwards D. CropSNPdb: a database of SNP array data for Brassica crops and hexaploid bread wheat. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2019;98:142-152. [PMID: 30548723 DOI: 10.1111/tpj.14194] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/05/2018] [Revised: 11/26/2018] [Accepted: 11/27/2018] [Indexed: 05/23/2023]
40
Rasheed A, Xia X. From markers to genome-based breeding in wheat. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2019;132:767-784. [PMID: 30673804 DOI: 10.1007/s00122-019-03286-4] [Citation(s) in RCA: 52] [Impact Index Per Article: 10.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/31/2018] [Accepted: 01/16/2019] [Indexed: 05/22/2023]
41
Fradgley N, Gardner KA, Cockram J, Elderfield J, Hickey JM, Howell P, Jackson R, Mackay IJ. A large-scale pedigree resource of wheat reveals evidence for adaptation and selection by breeders. PLoS Biol 2019;17:e3000071. [PMID: 30818353 PMCID: PMC6413959 DOI: 10.1371/journal.pbio.3000071] [Citation(s) in RCA: 48] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2018] [Revised: 03/12/2019] [Accepted: 02/08/2019] [Indexed: 11/26/2022]  Open
42
Gutierrez-Gonzalez JJ, Mascher M, Poland J, Muehlbauer GJ. Dense genotyping-by-sequencing linkage maps of two Synthetic W7984×Opata reference populations provide insights into wheat structural diversity. Sci Rep 2019;9:1793. [PMID: 30741967 PMCID: PMC6370774 DOI: 10.1038/s41598-018-38111-3] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2018] [Accepted: 12/18/2018] [Indexed: 11/24/2022]  Open
43
Arora S, Steuernagel B, Gaurav K, Chandramohan S, Long Y, Matny O, Johnson R, Enk J, Periyannan S, Singh N, Asyraf Md Hatta M, Athiyannan N, Cheema J, Yu G, Kangara N, Ghosh S, Szabo LJ, Poland J, Bariana H, Jones JDG, Bentley AR, Ayliffe M, Olson E, Xu SS, Steffenson BJ, Lagudah E, Wulff BBH. Resistance gene cloning from a wild crop relative by sequence capture and association genetics. Nat Biotechnol 2019;37:139-143. [PMID: 30718880 DOI: 10.1038/s41587-018-0007-9] [Citation(s) in RCA: 179] [Impact Index Per Article: 35.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2018] [Accepted: 12/12/2018] [Indexed: 01/17/2023]
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Stadlmeier M, Hartl L, Mohler V. Usefulness of a Multiparent Advanced Generation Intercross Population With a Greatly Reduced Mating Design for Genetic Studies in Winter Wheat. FRONTIERS IN PLANT SCIENCE 2018;9:1825. [PMID: 30574161 PMCID: PMC6291512 DOI: 10.3389/fpls.2018.01825] [Citation(s) in RCA: 39] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/07/2018] [Accepted: 11/23/2018] [Indexed: 05/05/2023]
45
Jordan KW, Wang S, He F, Chao S, Lun Y, Paux E, Sourdille P, Sherman J, Akhunova A, Blake NK, Pumphrey MO, Glover K, Dubcovsky J, Talbert L, Akhunov ED. The genetic architecture of genome-wide recombination rate variation in allopolyploid wheat revealed by nested association mapping. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2018;95:1039-1054. [PMID: 29952048 PMCID: PMC6174997 DOI: 10.1111/tpj.14009] [Citation(s) in RCA: 61] [Impact Index Per Article: 10.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/27/2017] [Revised: 05/21/2018] [Accepted: 06/06/2018] [Indexed: 05/18/2023]
46
Sannemann W, Lisker A, Maurer A, Léon J, Kazman E, Cöster H, Holzapfel J, Kempf H, Korzun V, Ebmeyer E, Pillen K. Adaptive selection of founder segments and epistatic control of plant height in the MAGIC winter wheat population WM-800. BMC Genomics 2018;19:559. [PMID: 30064354 PMCID: PMC6069784 DOI: 10.1186/s12864-018-4915-3] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2018] [Accepted: 07/02/2018] [Indexed: 01/15/2023]  Open
47
Haenel Q, Laurentino TG, Roesti M, Berner D. Meta-analysis of chromosome-scale crossover rate variation in eukaryotes and its significance to evolutionary genomics. Mol Ecol 2018;27:2477-2497. [PMID: 29676042 DOI: 10.1111/mec.14699] [Citation(s) in RCA: 102] [Impact Index Per Article: 17.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2017] [Revised: 03/23/2018] [Accepted: 03/26/2018] [Indexed: 01/02/2023]
48
Jin X, Feng B, Xu Z, Fan X, liu J, Liu Q, Zhu P, Wang T. TaAAP6-3B, a regulator of grain protein content selected during wheat improvement. BMC PLANT BIOLOGY 2018;18:71. [PMID: 29685104 PMCID: PMC5914022 DOI: 10.1186/s12870-018-1280-y] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/16/2017] [Accepted: 04/03/2018] [Indexed: 06/08/2023]
49
Dixon LE, Greenwood JR, Bencivenga S, Zhang P, Cockram J, Mellers G, Ramm K, Cavanagh C, Swain SM, Boden SA. TEOSINTE BRANCHED1 Regulates Inflorescence Architecture and Development in Bread Wheat (Triticum aestivum). THE PLANT CELL 2018;30:563-581. [PMID: 29444813 PMCID: PMC5894836 DOI: 10.1105/tpc.17.00961] [Citation(s) in RCA: 155] [Impact Index Per Article: 25.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/19/2017] [Revised: 01/22/2018] [Accepted: 02/10/2018] [Indexed: 05/18/2023]
50
Chang Y, Ding J, Xu Y, Li D, Zhang W, Li L, Song J. SLAF-based high-density genetic map construction and QTL mapping for major economic traits in sea urchin Strongylocentrotus intermedius. Sci Rep 2018;8:820. [PMID: 29339742 PMCID: PMC5770408 DOI: 10.1038/s41598-017-18768-y] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2017] [Accepted: 12/13/2017] [Indexed: 11/09/2022]  Open
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