Modelling predicts that soybean is poised to dominate crop production across Africa

Stakeholder-driven transformative adaptation is needed for climate-smart nutrition security in sub-Saharan Africa

Improving nutrition security in sub-Saharan Africa under increasing climate risks and population growth requires a strong and contextualized evidence base. Yet, to date, few studies have assessed climate-smart agriculture and nutrition security simultaneously. Here we use an integrated assessment framework (iFEED) to explore stakeholder-driven scenarios of food system transformation towards climate-smart nutrition security in Malawi, South Africa, Tanzania and Zambia. iFEED translates climate-food-emissions modelling into policy-relevant information using model output implication statements. Results show that diversifying agricultural production towards more micronutrient-rich foods is necessary to achieve an adequate population-level nutrient supply by mid-century. Agricultural areas must expand unless unprecedented rapid yield improvements are achieved. While these transformations are challenging to accomplish and often associated with increased greenhouse gas emissions, the alternative for a nutrition-secure future is to rely increasingly on imports, which would outsource emissions and be economically and politically challenging given the large import increases required.

Protein Hydrolysate from Underutilized Legumes: Unleashing the Potential for Future Functional Foods

Proteins play a vital role in human development, growth, and overall health. Traditionally, animal-derived proteins were considered the primary source of dietary protein. However, in recent years, there has been a remarkable shift in dietary consumption patterns, with a growing preference for plant-based protein sources. This shift has resulted in a significant increase in the production of plant proteins in the food sector. Consequently, there has been a surge in research exploring various plant sources, particularly wild, and underutilized legumes such as Canavalia, Psophocarpus, Cajanus, Lablab, Phaseolus, and Vigna, due to their exceptional nutraceutical value. This review presents the latest insights into innovative approaches used to extract proteins from underutilized legumes. Furthermore, it highlights the purification of protein hydrolysate using Fast Protein Liquid Chromatography. This review also covers the characterization of purified peptides, including their molecular weight, amino acid composition, and the creation of three-dimensional models based on amino acid sequences. The potential of underutilized legume protein hydrolysates as functional ingredients in the food industry is a key focus of this review. By incorporating these protein sources into food production, we can foster sustainable and healthy practices while minimizing environmental impact. The investigation of underutilized legumes offers exciting possibilities for future research and development in this area, further enhancing the utilization of plant-based protein sources.

Twenty years of mining salt tolerance genes in soybean

Current combined challenges of rising food demand, climate change and farmland degradation exert enormous pressure on agricultural production. Worldwide soil salinization, in particular, necessitates the development of salt-tolerant crops. Soybean, being a globally important produce, has its genetic resources increasingly examined to facilitate crop improvement based on functional genomics. In response to the multifaceted physiological challenge that salt stress imposes, soybean has evolved an array of defences against salinity. These include maintaining cell homeostasis by ion transportation, osmoregulation, and restoring oxidative balance. Other adaptations include cell wall alterations, transcriptomic reprogramming, and efficient signal transduction for detecting and responding to salt stress. Here, we reviewed functionally verified genes that underly different salt tolerance mechanisms employed by soybean in the past two decades, and discussed the strategy in selecting salt tolerance genes for crop improvement. Future studies could adopt an integrated multi-omic approach in characterizing soybean salt tolerance adaptations and put our existing knowledge into practice via omic-assisted breeding and gene editing. This review serves as a guide and inspiration for crop developers in enhancing soybean tolerance against abiotic stresses, thereby fulfilling the role of science in solving real-life problems.

Supplementary Information

The online version contains supplementary material available at 10.1007/s11032-023-01383-3.

Underutilized legumes: nutrient status and advanced breeding approaches for qualitative and quantitative enhancement

Underutilized/orphan legumes provide food and nutritional security to resource-poor rural populations during periods of drought and extreme hunger, thus, saving millions of lives. The Leguminaceae, which is the third largest flowering plant family, has approximately 650 genera and 20,000 species and are distributed globally. There are various protein-rich accessible and edible legumes, such as soybean, cowpea, and others; nevertheless, their consumption rate is far higher than production, owing to ever-increasing demand. The growing global urge to switch from an animal-based protein diet to a vegetarian-based protein diet has also accelerated their demand. In this context, underutilized legumes offer significant potential for food security, nutritional requirements, and agricultural development. Many of the known legumes like Mucuna spp., Canavalia spp., Sesbania spp., Phaseolus spp., and others are reported to contain comparable amounts of protein, essential amino acids, polyunsaturated fatty acids (PUFAs), dietary fiber, essential minerals and vitamins along with other bioactive compounds. Keeping this in mind, the current review focuses on the potential of discovering underutilized legumes as a source of food, feed and pharmaceutically valuable chemicals, in order to provide baseline data for addressing malnutrition-related problems and sustaining pulse needs across the globe. There is a scarcity of information about underutilized legumes and is restricted to specific geographical zones with local or traditional significance. Around 700 genera and 20,000 species remain for domestication, improvement, and mainstreaming. Significant efforts in research, breeding, and development are required to transform existing local landraces of carefully selected, promising crops into types with broad adaptability and economic viability. Different breeding efforts and the use of biotechnological methods such as micro-propagation, molecular markers research and genetic transformation for the development of underutilized crops are offered to popularize lesser-known legume crops and help farmers diversify their agricultural systems and boost their profitability.

Escalate protein plates from legumes for sustainable human nutrition

Protein is one of the most important, foremost, and versatile nutrients in food. The quantity and quality of protein are determinants of its nutritional values. Therefore, adequate consumption of high-quality protein is essential for optimal growth, development, and health of humans. Based on short-term nitrogen balance studies, the Recommended Dietary Allowance of protein for the healthy adult with minimal physical activity is 0.8 g protein/kg body weight (BW) per day. Proteins are present in good quantities in not only animals but also in plants, especially in legumes. With the growing demand for protein, interest in plant proteins is also rising due to their comparative low cost as well as the increase in consumers' demand originating from health and environmental concerns. Legumes are nutrient-dense foods, comprising components identified as "antinutritional factors" that can reduce the bioavailability of macro and micronutrients. Other than nutritive value, the physiochemical and behavioral properties of proteins during processing plays a significant role in determining the end quality of food. The term "complete protein" refers to when all nine essential amino acids are present in the correct proportion in our bodies. To have a balanced diet, the right percentage of protein is required for our body. The consumption of these high protein-containing foods will lead to protein sustainability and eradicate malnutrition. Here, we shed light on major opportunities to strengthen the contribution of diversity in legume crops products to sustainable diets. This review will boost awareness and knowledge on underutilized proteinous foods into national nutritional security programs.

Impacts of extension dissemination and technology adoption on farmers' efficiency and welfare in Ghana: Evidence from legume inoculant technology

Examining the welfare impact of agricultural development interventions that incorporate diffusion of improved production technologies to farmers within extension delivery programs can be very challenging, because of the difficulty in disentangling the individual impacts of the production technology and the extension delivery program. Using recent farm level survey data from extension dissemination program of legume inoculant technology of 600 farmers in Ghana, we employ a recent methodological approach to investigate, simultaneously, the impact of the inoculant technology adoption and the extension program participation on farmers' productivity, efficiency and welfare. We decompose each of these impact measures into subcomponents whose causal paths can be traced to both the adoption of the production technology and the extension delivery program. We find that, in terms of yields and net revenue, direct contribution of improved technology adoption alone is 34 and 64%, respectively, and 35 and 66% indirectly due to improved farmer efficiency, leading to 36 and 74% improvement in farmers' welfare, respectively. On the other hand, direct contribution of extension delivery program participation alone is 66 and 36%, respectively, with 66 and 34% indirectly due to improved farmer efficiency, resulting in 64 and 26% improvement in farmers' welfare, respectively. Based on the findings, we recommend that policymakers should invest in research and development to produce yield enhancing agricultural technologies suitable for poor and degraded soil conditions in developing countries which can contribute immensely to poverty and food insecurity reduction. The development of new agricultural technologies must be pursued with vigorous provision of extension services to farmers to be able to exploit the full potentials of the new technologies.

Socioeconomic drivers of inoculant technology and chemical fertilizer utilization among soybean farmers in the Tolon District of Ghana

Soybean farming is an important source of income for smallholder farmers in Ghana, particularly in the northern savanna ecological zones, where soil infertility is a challenge. To increase soybean production and farm revenue, farmers must adopt improved soybean production technologies. Smallholder soybean farmers' decisions to embrace high-yielding technology are influenced by various socioeconomic factors. The factors driving the adoption of rhizobium inoculant and mineral fertilizer technologies in Ghana's Tolon district were evaluated using a multinomial logit model with 200 smallholder soybean farmers. According to the findings, the likelihood of using inoculants and inorganic fertilizers increased with herd size, farm size, and access to extension services. In addition, female soybean producers were more likely than their male counterparts to use inoculants and chemical fertilizers. The study also found that soybean producers were less likely to use inoculants and chemical fertilizers because of their distance from the local market. To encourage technology adoption, the study recommends that agricultural extension services to farmers be increased. Farmers should also be encouraged to join farmer-based groups to increase inoculant technology uptake.

Physiological breeding for yield improvement in soybean: solar radiation interception-conversion, and harvest index

KEY MESSAGE

Efficiency of light interception, Radiation use efficiency and harvest index can be used as targets to improve grain yield potential in soybean. Grain yield (GY) production can be expressed as the result of three main efficiencies: light interception (Ei), radiation use (RUE), and harvest index (HI). Although dissecting GY through these three efficiencies is not entirely new, there is a lack of knowledge about the phenotypic variation, the genetic architecture, and the relative contribution of these three efficiencies on GY in soybean. This knowledge gap coupled with laborious phenotyping prevents the active consideration of these efficiencies into breeding programs. This study aims to reveal the phenotypic variation, heritability, genetic relationships, genetic architecture, and genomic prediction for Ei, RUE, and HI in soybean. We evaluated a maturity control panel of 383 Recombinant Inbred Lines (RILs) selected from the soybean nested association mapping (SoyNAM) population. Dry matter ground measured along with canopy coverage (CC) from UAS imagery were collected in three environments. Light interception was modeled through a logistic curve using CC as a proxy. The total above-ground biomass collected during the growing season and its respective cumulative light intercepted were used to derive RUE through linear models fitting. Additive-genetic correlations, genome-wide association (GWA) and whole-genome regressions (WGR) were performed to evaluate the relationship between traits, their association with genomic regions, and the feasibility of predicting these efficiencies with genomic information. Correlation analyses considered three groups: the entire data set, and the high- and low-yielding RILs to determine association as a function of the GY. Our results revealed moderate to high phenotypic variation for Ei, RUE, and HI with ranges of 8.5%, 1.1 g MJ-1, and 0.2, respectively. Additive-genetic correlation revealed a strong relationship of GY with HI and moderate with RUE and Ei when whole data set was considered, but negligible contribution of HI on GY when just the top 100 was analyzed. The GWA analyses showed that Ei is associated with three SNPs; two of them located on chromosome 7 and one on chromosome 11 with no previous quantitative trait loci (QTLs) reported for these regions. RUE is associated with four SNPs on chromosomes 1, 7, 11, and 18. Some of these QTLs are novel, while others are previously documented for plant architecture and chlorophyll content. Two SNPs positioned on chromosome 13 and 15 with previous QTLs reported for plant height and seed set, weight and abortion were associated with HI. WGR showed high predictive ability for Ei, RUE, and HI with maximum correlation ranging between 0.75 and 0.80. Future improvements in GY can be expected through strategies prioritizing Ei for short-term results when using high yielding germplasm and RUE for medium- and long-term outcomes. This work is a pioneer attempt to integrate traditional physiological traits into the breeding process in the context of physiological breeding.

Assessment of the Genetic Structure and Diversity of Soybean (Glycine max L.) Germplasm Using Diversity Array Technology and Single Nucleotide Polymorphism Markers

Knowledge of the genetic structure and diversity of germplasm collections is crucial for sustainable genetic improvement through hybridization programs and rapid adaptation to changing breeding objectives. The objective of this study was to determine the genetic diversity and population structure of 281 International Institute of Tropical Agriculture (IITA) soybean accessions using diversity array technology (DArT) and single nucleotide polymorphism (SNP) markers for the efficient utilization of these accessions. From the results, the SNP and DArT markers were well distributed across the 20 soybean chromosomes. The cluster and principal component analyses revealed the genetic diversity among the 281 accessions by grouping them into two stratifications, a grouping that was also evident from the population structure analysis, which divided the 281 accessions into two distinct groups. The analysis of molecular variance revealed that 97% and 98% of the genetic variances using SNP and DArT markers, respectively, were within the population. Genetic diversity indices such as Shannon's diversity index, diversity and unbiased diversity revealed the diversity among the different populations of the soybean accessions. The SNP and DArT markers used provided similar information on the structure, diversity and polymorphism of the accessions, which indicates the applicability of the DArT marker in genetic diversity studies. Our study provides information about the genetic structure and diversity of the IITA soybean accessions that will allow for the efficient utilization of these accessions in soybean improvement programs, especially in Africa.

Optimizing nitrogen supply promotes biomass, physiological characteristics and yield components of soybean (Glycine max L. Merr.)

Avoidable or inappropriate nitrogen (N) fertilizer rates harmfully affect the yield production and ecological value. Therefore, the aims of this study were to optimize the rate and timings of N fertilizer to maximize yield components and photosynthetic parameter of soybean. This field experiment consists of five fertilizer N rates: 0, 75, 150, 225 and 300 kg N ha⁻¹ arranged in main plots and four N fertilization timings: V₅ (trifoliate leaf), R₂ (full flowering stage) and R₄ (full poding stage), and R₆ (full seeding stage) growth stages organized as subplots. Results revealed that 225 kg N ha⁻¹ significantly enhanced grain yield components, total chlorophyll (Chl), photosynthetic rate (P_N), and total dry biomass and N accumulation by 20%, 16%, 28%, 7% and 12% at R₄ stage of soybean. However, stomatal conductance (g_s), leaf area index (LAI), intercellular CO₂ concentration (Ci) and transpiration rate (E) were increased by 12%, 88%, 10%, 18% at R₆ stage under 225 kg N ha⁻¹. Grain yield was significantly associated with photosynthetic characteristics of soybean. In conclusion, the amount of nitrogen 225 kg ha⁻¹ at R₄ and R₆ stages effectively promoted the yield components and photosynthetic characteristics of soybean.

Crop breeding for a changing climate: integrating phenomics and genomics with bioinformatics

Safeguarding crop yields in a changing climate requires bioinformatics advances in harnessing data from vast phenomics and genomics datasets to translate research findings into climate smart crops in the field. Climate change and an additional 3 billion mouths to feed by 2050 raise serious concerns over global food security. Crop breeding and land management strategies will need to evolve to maximize the utilization of finite resources in coming years. High-throughput phenotyping and genomics technologies are providing researchers with the information required to guide and inform the breeding of climate smart crops adapted to the environment. Bioinformatics has a fundamental role to play in integrating and exploiting this fast accumulating wealth of data, through association studies to detect genomic targets underlying key adaptive climate-resilient traits. These data provide tools for breeders to tailor crops to their environment and can be introduced using advanced selection or genome editing methods. To effectively translate research into the field, genomic and phenomic information will need to be integrated into comprehensive clade-specific databases and platforms alongside accessible tools that can be used by breeders to inform the selection of climate adaptive traits. Here we discuss the role of bioinformatics in extracting, analysing, integrating and managing genomic and phenomic data to improve climate resilience in crops, including current, emerging and potential approaches, applications and bottlenecks in the research and breeding pipeline.

Modeling of Cowpea (Vigna unguiculata) Yield and Control Insecticide Exposure in a Semi-Arid Region

The aim of this study was to evaluate the adaptability of different genotypes of cowpea (Vigna unguiculata L. Walp.) in the edaphoclimatic conditions of a semi-arid region. In the experimental design, a completely randomized split-plot (2 × 8), with 3 repetitions (blocks) was used. The experiment comprised 7 new genotypes and 1 local genotype as the first main factor and application of insecticide as a secondary factor. Two-factor analysis of variance (two-way ANOVA) determined the differences between the treated and untreated plots. The results obtained in the experiment showed that the introduced genotypes V3 (IT07K-181-55), V7 (H4), and V5 (IT97K-556-4M) adapted well to the edaphoclimatic conditions of the study area and their yields were respectively 1019, 1015, and 841 kg/ha of grains in treated plots and 278, 517 and 383 kg/ha in untreated plots. Multivariate analysis revealed that the most important parameter was the germination rate. Finally, the best yield was obtained with the genotype V3 (IT07K-181-55), subjected to the use of insecticide, and with the V7 (H4) genotype in untreated plants. The findings presented in this research should be useful in crop system agricultural programs, particularly in the terms of selection of cultivating systems suitable for high-yielding cowpea.

Factors facilitating sustainable scientific partnerships between developed and developing countries

International scientific partnerships are key to the success of strategic investments in plant science research and the farm-level adoption of new varieties and technologies, as well as the coherence of agricultural policies across borders to address global challenges. Such partnerships result not only in a greater impact of published research enhancing the career development of early and later stage researchers, but they also ensure that advances in plant science and crop breeding technologies make a meaningful contribution to society by brokering acceptance of emerging solutions to the world problems. We discuss the evidence showing that despite a lack of funding, scientists in some African countries make a significant contribution to global science output. We consider the criteria for success in establishing long-term scientific partnerships between scientists in developing countries in Southern Africa ("the South") and developed countries such as the UK ("the North"). We provide our own personal perspectives on the key attributes that lead to successful institutional collaborations and the establishment of sustainable networks of successful "North-South" scientific partnerships. In addition, we highlight some of the stumbling blocks which tend to hinder the sustainability of long-term "North-South" scientific networks. We use this personal knowledge and experiences to provide guidelines on how to establish and maintain successful long-term "North-South" scientific partnerships.

Testing of Commercial Inoculants to Enhance P Uptake and Grain Yield of Promiscuous Soybean in Kenya

The aim of this study was to assess the potential of commercial mycorrhizal inoculants and a rhizobial inoculant to improve soybean yield in Kenya. A promiscuous soybean variety was grown in a greenhouse pot study with two representative soils amended with either water-soluble mineral P or rock P to assess product performance. The performance of selected mycorrhizal inoculants combined with a rhizobial inoculant (Legumefix) was then assessed with farmer groups in three agroecological zones using a small-plot, randomized complete block design to assess soybean root colonization by mycorrhiza, nodulation, and plant biomass production in comparison to rhizobial inoculant alone or with water-soluble mineral P. Greenhouse results showed highly significant root colonization by commercial mycorrhizal inoculant alone (p < 0.001) and in interaction with soil type (p < 0.0001) and P source (p < 0.0001). However, no significant effect was shown in plant P uptake, biomass production, or leaf chlorophyll index. In field conditions, the effects of mycorrhizal and rhizobial inoculants in combination or alone were highly context-specific and may induce either a significant increase or decrease in root mycorrhizal colonization and nodule formation. Mycorrhizal and rhizobial inoculants in combination or alone had limited effect on plant P uptake, biomass production, leaf chlorophyll index, and grain yield. Though some mycorrhizal inoculants induced significant root colonization by mycorrhizal inoculants, this did not lead to higher soybean yield, even in soils with limited P content. Our results are further evidence that inoculant type, soil type, and P source are critical factors to evaluate commercial inoculants on a context-specific basis. However, our results highlight the need for the identification of additional targeting criteria, as inoculant type, soil type, and P source alone were not enough to be predictive of the response. Without the identification of predictive criteria for improved targeting, the economic use of such inoculants will remain elusive.

The effects and interaction of soybean maturity gene alleles controlling flowering time, maturity, and adaptation in tropical environments

BACKGROUND

Soybean is native to the temperate zones of East Asia. Poor yields of soybean in West African countries may be partially attributed to inadequate adaptation of soybean to tropical environments. Adaptation will require knowledge of the effects of allelic combinations of major maturity genes (E1, E2, and E3) and stem architecture. The long juvenile trait (J) influences soybean flowering time in short, ~ 12 h days, which characterize tropical latitudes. Soybean plant architecture includes determinate or indeterminate stem phenotypes controlled by the Dt1 gene. Understanding the influence of these genetic components on plant development and adaptation is key to optimize phenology and improve soybean yield potential in tropical environments.

RESULTS

Soybean lines from five recombinant inbred populations were developed that varied in their combinations of targeted genes. The soybean lines were field tested in multiple environments and characterized for days to flowering (DTF), days to maturity (DTM), and plant height in locations throughout northern Ghana, and allelic combinations were determined for each line for associating genotype with phenotype. The results revealed significant differences based on genotype for DTF and DTM and allowed the comparison of different variant alleles of those genes. The mutant alleles of J and E1 had significant impact on DTF and DTM, and alleles of those genes interacted with each other for DTF but not DTM. The Dt1 gene significantly influenced plant height but not DTF or DTM.

CONCLUSIONS

This research identified major and minor effect alleles of soybean genes that can be combined to control DTF, DTM, and plant height in short day tropical environments in Ghana. These phenotypes contribute to adaptation to a low latitude environment that can be optimized in a soybean breeding program with targeted selection of desired allele combinations. The knowledge of the genetic control of these traits will enhance molecular breeding to produce optimally adapted soybean varieties targeted to tropical environments.

Divergent metabolic adjustments in nodules are indispensable for efficient N2 fixation of soybean under phosphate stress

The main objective of the present study was to characterize the symbiotic N2 fixation (SNF) capacity and to elucidate the underlying mechanisms for low-Pi acclimation in soybean plants grown in association with two Bradyrhizobium diazoefficiens strains which differ in SNF capacity (USDA110 vs. CB1809). In comparison with the USDA110-soybean, the CB1809-soybean association revealed a greater SNF capacity in response to Pi starvation, as evidenced by relative higher plant growth and higher expression levels of the nifHDK genes. This enhanced Pi acclimation was partially related to the efficient utilization to the overall carbon (C) budget of symbiosis in the CB1809-induced nodules compared with that of the USDA110-induced nodules under low-Pi provision. In contrast, the USDA110-induced nodules favored other metabolic acclimation mechanisms that expend substantial C cost, and consequently cause negative implications on nodule C expenditure during low-Pi conditions. Fatty acids, phytosterols and secondary metabolites are characterized among the metabolic pathways involved in nodule acclimation under Pi starvation. While USDA110-soybean association performed better under Pi sufficiency, it is very likely that the CB1809-soybean association is better acclimatized to cope with Pi deficiency owing to the more effective functional plasticity and lower C cost associated with these nodular metabolic arrangements.

Legumes-The art and science of environmentally sustainable agriculture

Symbiotic nitrogen fixation, which is carried out by the legume-rhizobia partnership, is a major source of nitrogen acquisition in natural ecosystems and in agriculture. The benefits to the plant gained through the rhizobial-legume symbiosis can be further enhanced by associations of the legume with arbuscular mycorrhiza. The progressive engagement of the legume host with the rhizobial bacteria and mycorrhizal fungi requires an extensive exchange of signalling molecules. These signals alter the transcriptional profiles of the partners, guiding and enabling extensive microbial and fungal proliferation in the roots. Such interactions and associations are greatly influenced by environmental stresses, which also severely limit the productivity of legume crops. Part II of the Special Issue on Legumes provides new insights into the mechanisms that underpin sustainable symbiotic partnerships, as well as the effects of abiotic stresses, such as drought, waterlogging, and salinity on legume biology. The requirement for germplasm and new breeding methods is discussed as well as the future of legume production in the face of climate change.