Reference Citation Analysis: Find an Article, Find a Category, Find a Journal, Find a Scholar

For: Li L, Jin Z, Huang R, Zhou J, Song F, Yao L, Li P, Lu W, Xiao L, Quan M, Zhang D, Du Q. Leaf physiology variations are modulated by natural variations that underlie stomatal morphology in Populus. Plant Cell Environ 2023;46:150-170. [PMID: 36285358 DOI: 10.1111/pce.14471] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/23/2022] [Revised: 05/26/2022] [Accepted: 05/28/2022] [Indexed: 06/16/2023]

For:	Li L, Jin Z, Huang R, Zhou J, Song F, Yao L, Li P, Lu W, Xiao L, Quan M, Zhang D, Du Q. Leaf physiology variations are modulated by natural variations that underlie stomatal morphology in Populus. Plant Cell Environ 2023;46:150-170. [PMID: 36285358 DOI: 10.1111/pce.14471] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/23/2022] [Revised: 05/26/2022] [Accepted: 05/28/2022] [Indexed: 06/16/2023]

Number

Cited by Other Article(s)

Xiong Z, Xiao J, Zhao J, Liu S, Yang D, Xiong D, Cui K, Peng S, Huang J. Estimation of Photosynthetic Induction Is Significantly Affected by Light Environments of Local Leaves and Whole Plants in Oryza Genus. PLANTS (BASEL, SWITZERLAND) 2024;13:1646. [PMID: 38931077 PMCID: PMC11207834 DOI: 10.3390/plants13121646] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/14/2024] [Revised: 06/08/2024] [Accepted: 06/09/2024] [Indexed: 06/28/2024]

Niu MX, Feng CH, He F, Zhang H, Bao Y, Liu SJ, Liu X, Su Y, Liu C, Wang HL, Yin W, Xia X. The miR6445-NAC029 module regulates drought tolerance by regulating the expression of glutathione S-transferase U23 and reactive oxygen species scavenging in Populus. THE NEW PHYTOLOGIST 2024. [PMID: 38515251 DOI: 10.1111/nph.19703] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/27/2023] [Accepted: 03/06/2024] [Indexed: 03/23/2024]

Affiliation(s)

Meng-Xue Niu State Key Laboratory of Tree Genetics and Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China
Cong-Hua Feng State Key Laboratory of Tree Genetics and Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China
Fang He Key Laboratory of National Forestry & Grassland Administration on Forest Resources Conservation and Ecological Safety in the Upper Reaches of the Yangtze River, College of Forestry, Sichuan Agricultural University, Chengdu, 611130, China
Han Zhang State Key Laboratory of Tree Genetics and Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China
Yu Bao State Key Laboratory of Tree Genetics and Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China
Shu-Jing Liu State Key Laboratory of Tree Genetics and Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China
Xiao Liu State Key Laboratory of Tree Genetics and Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China
Yanyan Su State Key Laboratory of Tree Genetics and Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China
Chao Liu State Key Laboratory of Tree Genetics and Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China
Hou-Ling Wang State Key Laboratory of Tree Genetics and Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China
Weilun Yin State Key Laboratory of Tree Genetics and Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China
Xinli Xia State Key Laboratory of Tree Genetics and Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China

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Zhao J, Li A, Xu M, Dai G, Chen J. Genome-wide analysis of the TIFY family in Lycium and the negative regulation of stomatal development by LrJAZ2 gene. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2024;206:108285. [PMID: 38145586 DOI: 10.1016/j.plaphy.2023.108285] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/23/2023] [Revised: 12/13/2023] [Accepted: 12/14/2023] [Indexed: 12/27/2023]

Yang T, Dong J, Zhao J, Zhang L, Zhou L, Yang W, Ma Y, Wang J, Fu H, Chen J, Li W, Hu H, Jiang X, Liu Z, Liu B, Zhang S. Genome-wide association mapping combined with gene-based haplotype analysis identify a novel gene for shoot length in rice (Oryza sativa L.). TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2023;136:251. [PMID: 37985474 PMCID: PMC10661777 DOI: 10.1007/s00122-023-04497-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/18/2023] [Accepted: 10/27/2023] [Indexed: 11/22/2023]

Abstract

KEY MESSAGE

Genome-wide association mapping revealed a novel QTL for shoot length across multiple environments. Its causal gene, LOC_Os01g68500, was identified firstly through gene-based haplotype analysis, gene expression and knockout transgenic verification. Strong seedling vigor is an important breeding target for rice varieties used in direct seeding. Shoot length (SL) is one of the important traits associated with seedling vigor characterized by rapid growth of seedling, which enhance seedling emergence. Therefore, mining genes for SL and conducting molecular breeding help to develop varieties for direct seeding. However, few QTLs for SL have been fine mapped or cloned so far. In this study, a genome-wide association study of SL was performed in a diverse rice collection consisting of 391 accessions in two years, using phenotypes generated by different cultivation methods according to the production practice, and a total of twenty-four QTLs for SL were identified. Among them, the novel QTL qSL-1f on chromosome 1 could be stably detected across all three cultivation methods in the whole population and indica subpopulation. Through gene-based haplotype analysis of the annotated genes within the putative region of qSL-1f, and validated by gene expression and knockout transgenic experiments, LOC_Os01g68500 (i.e., Os01g0913100 in RAP-DB) was identified as the causal gene for SL, which has a single-base variation (C-to-A transversion) in its CDS region, resulting in the significant difference in SL of rice. LOC_Os01g68500 encodes a DUF538 (Domain of unknown function) containing protein, and the function of DUF538 protein gene on rice seedling growth is firstly reported in this study. These results provide a new clue for exploring the molecular mechanism regulating SL, and promising gene source for the molecular breeding in rice.

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Affiliation(s)

Tifeng Yang Rice Research Institute, Guangdong Key Laboratory of New Technology in Rice Breeding, Guangdong Rice Engineering Laboratory, Key Laboratory of Genetics and Breeding of High Quality Rice in Southern China (Co-Construction By Ministry and Province), Ministry of Agriculture and Rural Affairs, Guangdong Academy of Agricultural Sciences, Guangzhou, 510640, China
Jingfang Dong Rice Research Institute, Guangdong Key Laboratory of New Technology in Rice Breeding, Guangdong Rice Engineering Laboratory, Key Laboratory of Genetics and Breeding of High Quality Rice in Southern China (Co-Construction By Ministry and Province), Ministry of Agriculture and Rural Affairs, Guangdong Academy of Agricultural Sciences, Guangzhou, 510640, China
Junliang Zhao Rice Research Institute, Guangdong Key Laboratory of New Technology in Rice Breeding, Guangdong Rice Engineering Laboratory, Key Laboratory of Genetics and Breeding of High Quality Rice in Southern China (Co-Construction By Ministry and Province), Ministry of Agriculture and Rural Affairs, Guangdong Academy of Agricultural Sciences, Guangzhou, 510640, China
Longting Zhang Rice Research Institute, Guangdong Key Laboratory of New Technology in Rice Breeding, Guangdong Rice Engineering Laboratory, Key Laboratory of Genetics and Breeding of High Quality Rice in Southern China (Co-Construction By Ministry and Province), Ministry of Agriculture and Rural Affairs, Guangdong Academy of Agricultural Sciences, Guangzhou, 510640, China College of Agriculture, South China Agricultural University, Guangzhou, 510642, China
Lian Zhou Rice Research Institute, Guangdong Key Laboratory of New Technology in Rice Breeding, Guangdong Rice Engineering Laboratory, Key Laboratory of Genetics and Breeding of High Quality Rice in Southern China (Co-Construction By Ministry and Province), Ministry of Agriculture and Rural Affairs, Guangdong Academy of Agricultural Sciences, Guangzhou, 510640, China
Wu Yang Rice Research Institute, Guangdong Key Laboratory of New Technology in Rice Breeding, Guangdong Rice Engineering Laboratory, Key Laboratory of Genetics and Breeding of High Quality Rice in Southern China (Co-Construction By Ministry and Province), Ministry of Agriculture and Rural Affairs, Guangdong Academy of Agricultural Sciences, Guangzhou, 510640, China
Yamei Ma Rice Research Institute, Guangdong Key Laboratory of New Technology in Rice Breeding, Guangdong Rice Engineering Laboratory, Key Laboratory of Genetics and Breeding of High Quality Rice in Southern China (Co-Construction By Ministry and Province), Ministry of Agriculture and Rural Affairs, Guangdong Academy of Agricultural Sciences, Guangzhou, 510640, China
Jian Wang Rice Research Institute, Guangdong Key Laboratory of New Technology in Rice Breeding, Guangdong Rice Engineering Laboratory, Key Laboratory of Genetics and Breeding of High Quality Rice in Southern China (Co-Construction By Ministry and Province), Ministry of Agriculture and Rural Affairs, Guangdong Academy of Agricultural Sciences, Guangzhou, 510640, China
Hua Fu Rice Research Institute, Guangdong Key Laboratory of New Technology in Rice Breeding, Guangdong Rice Engineering Laboratory, Key Laboratory of Genetics and Breeding of High Quality Rice in Southern China (Co-Construction By Ministry and Province), Ministry of Agriculture and Rural Affairs, Guangdong Academy of Agricultural Sciences, Guangzhou, 510640, China
Jiansong Chen Rice Research Institute, Guangdong Key Laboratory of New Technology in Rice Breeding, Guangdong Rice Engineering Laboratory, Key Laboratory of Genetics and Breeding of High Quality Rice in Southern China (Co-Construction By Ministry and Province), Ministry of Agriculture and Rural Affairs, Guangdong Academy of Agricultural Sciences, Guangzhou, 510640, China
Wenhui Li Rice Research Institute, Guangdong Key Laboratory of New Technology in Rice Breeding, Guangdong Rice Engineering Laboratory, Key Laboratory of Genetics and Breeding of High Quality Rice in Southern China (Co-Construction By Ministry and Province), Ministry of Agriculture and Rural Affairs, Guangdong Academy of Agricultural Sciences, Guangzhou, 510640, China
Haifei Hu Rice Research Institute, Guangdong Key Laboratory of New Technology in Rice Breeding, Guangdong Rice Engineering Laboratory, Key Laboratory of Genetics and Breeding of High Quality Rice in Southern China (Co-Construction By Ministry and Province), Ministry of Agriculture and Rural Affairs, Guangdong Academy of Agricultural Sciences, Guangzhou, 510640, China
Xianya Jiang Yangjiang Institute of Agricultural Science, Yangjiang, 529500, China
Ziqiang Liu College of Agriculture, South China Agricultural University, Guangzhou, 510642, China
Bin Liu Rice Research Institute, Guangdong Key Laboratory of New Technology in Rice Breeding, Guangdong Rice Engineering Laboratory, Key Laboratory of Genetics and Breeding of High Quality Rice in Southern China (Co-Construction By Ministry and Province), Ministry of Agriculture and Rural Affairs, Guangdong Academy of Agricultural Sciences, Guangzhou, 510640, China
Shaohong Zhang Rice Research Institute, Guangdong Key Laboratory of New Technology in Rice Breeding, Guangdong Rice Engineering Laboratory, Key Laboratory of Genetics and Breeding of High Quality Rice in Southern China (Co-Construction By Ministry and Province), Ministry of Agriculture and Rural Affairs, Guangdong Academy of Agricultural Sciences, Guangzhou, 510640, China.

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Li Y, Wang W, Zhang N, Cheng Y, Hussain S, Wang Y, Tian H, Hussain H, Lin R, Yuan Y, Wang C, Wang T, Wang S. Antagonistic Regulation of ABA Responses by Duplicated Tandemly Repeated DUF538 Protein Genes in Arabidopsis. PLANTS (BASEL, SWITZERLAND) 2023;12:2989. [PMID: 37631202 PMCID: PMC10459309 DOI: 10.3390/plants12162989] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/13/2023] [Revised: 08/15/2023] [Accepted: 08/16/2023] [Indexed: 08/27/2023]

Abstract

The plant hormone ABA (abscisic acid) regulates plant responses to abiotic stresses by regulating the expression of ABA response genes. However, the functions of a large portion of ABA response genes have remained unclear. We report in this study the identification of ASDs (ABA-inducible signal peptide-containing DUF538 proteins), a subgroup of DUF538 proteins with a signal peptide, as the regulators of plant responses to ABA in Arabidopsis. ASDs are encoded by four closely related DUF538 genes, with ASD1/ASD2 and ASD3/ASD4 being two pairs of duplicated tandemly repeated genes. The quantitative RT-PCR (qRT-PCR) results showed that the expression levels of ASDs increased significantly in response to ABA as well as NaCl and mannitol treatments, with the exception that the expression level of ASD2 remained largely unchanged in response to NaCl treatment. The results of Arabidopsis protoplast transient transfection assays showed that ASDs were localized on the plasma membrane and in the cytosol and nucleus. When recruited to the promoter of the reporter gene via a fused GD domain, ASDs were able to slightly repress the expression of the co-transfected reporter gene. Seed germination and cotyledon greening assays showed that ABA sensitivity was increased in the transgenic plants that were over-expressing ASD1 or ASD3 but decreased in the transgenic plants that were over-expressing ASD2 or ASD4. On the other hand, ABA sensitivity was increased in the CRISPR/Cas9 gene-edited asd2 single mutants but decreased in the asd3 single mutants. A transcriptome analysis showed that differentially expressed genes in the 35S:ASD2 transgenic plant seedlings were enriched in several different processes, including in plant growth and development, the secondary metabolism, and plant hormone signaling. In summary, our results show that ASDs are ABA response genes and that ASDs are involved in the regulation of plant responses to ABA in Arabidopsis; however, ASD1/ASD3 and ASD2/ASD4 have opposite functions.

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Affiliation(s)

Yingying Li Key Laboratory of Molecular Epigenetics of MOE, Northeast Normal University, Changchun 130024, China; (Y.L.); (N.Z.); (Y.C.); (Y.W.); (H.T.); (H.H.); (R.L.); (Y.Y.); (C.W.); (T.W.)
Wei Wang Laboratory of Plant Molecular Genetics & Crop Gene Editing, School of Life Sciences, Linyi University, Linyi 276000, China; (W.W.); (S.H.)
Na Zhang Key Laboratory of Molecular Epigenetics of MOE, Northeast Normal University, Changchun 130024, China; (Y.L.); (N.Z.); (Y.C.); (Y.W.); (H.T.); (H.H.); (R.L.); (Y.Y.); (C.W.); (T.W.)
Yuxin Cheng Key Laboratory of Molecular Epigenetics of MOE, Northeast Normal University, Changchun 130024, China; (Y.L.); (N.Z.); (Y.C.); (Y.W.); (H.T.); (H.H.); (R.L.); (Y.Y.); (C.W.); (T.W.)
Saddam Hussain Laboratory of Plant Molecular Genetics & Crop Gene Editing, School of Life Sciences, Linyi University, Linyi 276000, China; (W.W.); (S.H.)
Yating Wang Key Laboratory of Molecular Epigenetics of MOE, Northeast Normal University, Changchun 130024, China; (Y.L.); (N.Z.); (Y.C.); (Y.W.); (H.T.); (H.H.); (R.L.); (Y.Y.); (C.W.); (T.W.)
Hainan Tian Key Laboratory of Molecular Epigenetics of MOE, Northeast Normal University, Changchun 130024, China; (Y.L.); (N.Z.); (Y.C.); (Y.W.); (H.T.); (H.H.); (R.L.); (Y.Y.); (C.W.); (T.W.)
Hadia Hussain Key Laboratory of Molecular Epigenetics of MOE, Northeast Normal University, Changchun 130024, China; (Y.L.); (N.Z.); (Y.C.); (Y.W.); (H.T.); (H.H.); (R.L.); (Y.Y.); (C.W.); (T.W.)
Rao Lin Key Laboratory of Molecular Epigenetics of MOE, Northeast Normal University, Changchun 130024, China; (Y.L.); (N.Z.); (Y.C.); (Y.W.); (H.T.); (H.H.); (R.L.); (Y.Y.); (C.W.); (T.W.)
Yuan Yuan Key Laboratory of Molecular Epigenetics of MOE, Northeast Normal University, Changchun 130024, China; (Y.L.); (N.Z.); (Y.C.); (Y.W.); (H.T.); (H.H.); (R.L.); (Y.Y.); (C.W.); (T.W.)
Chen Wang Key Laboratory of Molecular Epigenetics of MOE, Northeast Normal University, Changchun 130024, China; (Y.L.); (N.Z.); (Y.C.); (Y.W.); (H.T.); (H.H.); (R.L.); (Y.Y.); (C.W.); (T.W.)
Tianya Wang Key Laboratory of Molecular Epigenetics of MOE, Northeast Normal University, Changchun 130024, China; (Y.L.); (N.Z.); (Y.C.); (Y.W.); (H.T.); (H.H.); (R.L.); (Y.Y.); (C.W.); (T.W.)
Shucai Wang Key Laboratory of Molecular Epigenetics of MOE, Northeast Normal University, Changchun 130024, China; (Y.L.); (N.Z.); (Y.C.); (Y.W.); (H.T.); (H.H.); (R.L.); (Y.Y.); (C.W.); (T.W.) Laboratory of Plant Molecular Genetics & Crop Gene Editing, School of Life Sciences, Linyi University, Linyi 276000, China; (W.W.); (S.H.)

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