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Graziosi G, Lupini C, Favera FD, Martini G, Dosa G, Trevisani G, Garavini G, Mannelli A, Catelli E. Characterizing the domestic-wild bird interface through camera traps in an area at risk for avian influenza introduction in Northern Italy. Poult Sci 2024; 103:103892. [PMID: 38865769 PMCID: PMC11223120 DOI: 10.1016/j.psj.2024.103892] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2024] [Revised: 05/16/2024] [Accepted: 05/20/2024] [Indexed: 06/14/2024] Open
Abstract
Direct or indirect interactions between sympatric wildlife and poultry can lead to interspecies disease transmission. Particularly, avian influenza (AI) is a viral epidemic disease for which the poultry-wild bird interface shapes the risks of new viral introductions into poultry holdings. Given this background, the study hereby presented aimed to identify wild bird species in poultry house surroundings and characterize the spatiotemporal patterns of these visits. Eight camera traps were deployed for a year (January to December 2021) in 3 commercial chicken layer farms, including free-range and barn-type setups, located in a densely populated poultry area in Northern Italy at high risk for AI introduction via wild birds. Camera traps' positions were chosen based on wildlife signs identified during preliminary visits to the establishments studied. Various methods, including time series analysis, correspondence analysis, and generalized linear models, were employed to analyze the daily wild bird visits. A total of 1,958 camera trap days yielded 5,978 videos of wild birds from 27 different species and 16 taxonomic families. The animals were predominantly engaged in foraging activities nearby poultry houses. Eurasian magpies (Pica pica), ring-necked pheasants (Phasianus colchicus), and Eurasian collared doves (Streptopelia decaocto) were the most frequent visitors. Mallards (Anas platyrhynchos), an AI reservoir species, were observed only in a farm located next to a fishing sport lake. Time series analysis indicated that wild bird visits increased during spring and winter. Farm and camera trap location also influenced visit frequencies. Overall, the results highlighted specific species that could be prioritized for future AI epidemiological surveys. However, further research is required to assess their susceptibility and infectivity to currently circulating AI viruses, essential for identifying novel bridge hosts.
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Affiliation(s)
- Giulia Graziosi
- Department of Veterinary Medical Sciences, University of Bologna, Ozzano dell'Emilia, Bologna 40064, Italy.
| | - Caterina Lupini
- Department of Veterinary Medical Sciences, University of Bologna, Ozzano dell'Emilia, Bologna 40064, Italy
| | - Francesco Dalla Favera
- Department of Veterinary Medical Sciences, University of Bologna, Ozzano dell'Emilia, Bologna 40064, Italy
| | - Gabriella Martini
- Veterinary Services, Local Health Unit of Imola (A.U.S.L. di Imola), Imola, Bologna 40026, Italy
| | - Geremia Dosa
- Veterinary Services, Local Health Unit of Imola (A.U.S.L. di Imola), Imola, Bologna 40026, Italy
| | | | - Gloria Garavini
- Veterinary Services of Eurovo Group, Imola, Bologna 40026, Italy
| | - Alessandro Mannelli
- Department of Veterinary Sciences, University of Torino, Grugliasco, Turin 10095, Italy
| | - Elena Catelli
- Department of Veterinary Medical Sciences, University of Bologna, Ozzano dell'Emilia, Bologna 40064, Italy
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de Vos CJ, Elbers ARW. Quantitative Risk Assessment of Wind-Supported Transmission of Highly Pathogenic Avian Influenza Virus to Dutch Poultry Farms via Fecal Particles from Infected Wild Birds in the Environment. Pathogens 2024; 13:571. [PMID: 39057798 PMCID: PMC11279698 DOI: 10.3390/pathogens13070571] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2024] [Revised: 06/27/2024] [Accepted: 07/05/2024] [Indexed: 07/28/2024] Open
Abstract
A quantitative microbial risk assessment model was developed to estimate the probability that the aerosolization of fecal droppings from wild birds in the vicinity of poultry farms would result in the infection of indoor-housed poultry with highly pathogenic avian influenza virus (HPAIv) in the Netherlands. Model input parameters were sourced from the scientific literature and experimental data. The availability of data was diverse across input parameters, and especially parameters on the aerosolization of fecal droppings, survival of HPAIv and dispersal of aerosols were uncertain. Model results indicated that the daily probability of infection of a single poultry farm is very low, with a median value of 7.5 × 10-9. Accounting for the total number of poultry farms and the length of the bird-flu season, the median overall probability of at least one HPAIv-infected poultry farm during the bird-flu season is 2.2 × 10-3 (approximately once every 455 years). This is an overall estimate, averaged over different farm types, virus strains and wild bird species, and results indicate that uncertainty is relatively high. Based on these model results, we conclude that it is unlikely that this introduction route plays an important role in the occurrence of HPAIv outbreaks in indoor-housed poultry.
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Affiliation(s)
- Clazien J. de Vos
- Department of Epidemiology, Bioinformatics &Animal Models, Wageningen Bioveterinary Research, P.O. Box 65, 8200 AB Lelystad, The Netherlands;
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3
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Yin S, Xu C, Zhang Y, de Boer WF, Mundkur T, Artois J, Velkers FC, Takekawa JY, Si Y, Tian H, Han GZ, Chen Y, Chai H, Cui L, Huang ZYX. Strong and consistent effects of waterbird composition on HPAI H5 occurrences across Europe. ECOLOGICAL APPLICATIONS : A PUBLICATION OF THE ECOLOGICAL SOCIETY OF AMERICA 2024:e3010. [PMID: 38978282 DOI: 10.1002/eap.3010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/28/2023] [Revised: 03/01/2024] [Accepted: 04/22/2024] [Indexed: 07/10/2024]
Abstract
Since 2014, highly pathogenic avian influenza (HPAI) H5 viruses of clade 2.3.4.4 have been dominating the outbreaks across Europe, causing massive deaths among poultry and wild birds. However, the factors shaping these broad-scale outbreak patterns, especially those related to waterbird community composition, remain unclear. In particular, we do not know whether these risk factors differ from those of other H5 clades. Addressing this knowledge gap is important for predicting and preventing future HPAI outbreaks. Using extensive waterbird survey datasets from about 6883 sites, we here explored the effect of waterbird community composition on HPAI H5Nx (clade 2.3.4.4) spatial patterns in the 2016/2017 and 2020/2021 epidemics in Europe, and compared it with the 2005/2006 HPAI H5N1 (clade 2.2) epidemic. We showed that HPAI H5 occurrences in wild birds in the three epidemics were strongly associated with very similar waterbird community attributes, which suggested that, in nature, similar interspecific transmission processes operate between the HPAI H5 subtypes or clades. Importantly, community phylogenetic diversity consistently showed a negative association with H5 occurrence in all three epidemics, suggesting a dilution effect of phylogenetic diversity. In contrast, waterbird community variables showed much weaker associations with HPAI H5Nx occurrence in poultry. Our results demonstrate that models based on previous epidemics can predict future HPAI H5 patterns in wild birds, implying that it is important to include waterbird community factors in future HPAI studies to predict outbreaks and improve surveillance activities.
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Affiliation(s)
- Shenglai Yin
- Department of Zoology, School of Life Sciences, Nanjing Forestry University, Nanjing, China
- Department of Ecology, School of Life Sciences, Nanjing Normal University, Nanjing, China
| | - Chi Xu
- Department of Ecology, School of Life Sciences, Nanjing University, Nanjing, China
| | - Yong Zhang
- Department of Zoology, School of Life Sciences, Nanjing Forestry University, Nanjing, China
| | - Willem F de Boer
- Wildlife Ecology and Conservation Group, Wageningen University, Wageningen, The Netherlands
| | | | - Jean Artois
- Spatial Epidemiology Lab, Université Libre de Bruxelles, Brussels, Belgium
| | - Francisca C Velkers
- Department of Population Health Sciences, Faculty of Veterinary Medicine, Utrecht University, Utrecht, The Netherlands
| | | | - Yali Si
- Department of Environmental Biology, Institute of Environmental Sciences, Leiden University, Leiden, The Netherlands
| | - Huaiyu Tian
- State Key Laboratory of Remote Sensing Science, Beijing Normal University, Beijing, China
| | - Guan-Zhu Han
- Department of Ecology, School of Life Sciences, Nanjing Normal University, Nanjing, China
| | - Yuyang Chen
- State Key Laboratory of Remote Sensing Science, Beijing Normal University, Beijing, China
| | - Hongliang Chai
- Department of Wildlife Conservation and Management, College of Wildlife and Protected Area, Northeast Forestry University, Harbin, China
| | - Lijuan Cui
- Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China
| | - Zheng Y X Huang
- Department of Ecology, School of Life Sciences, Nanjing Normal University, Nanjing, China
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4
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Jackson RT, Marshall PM, Burkhart C, Schneck J, Kelly G, Roberts CP. Risk of invasive waterfowl interaction with poultry production: Understanding potential for avian pathogen transmission via species distribution models. Ecol Evol 2024; 14:e11647. [PMID: 39026949 PMCID: PMC11257698 DOI: 10.1002/ece3.11647] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2024] [Revised: 06/08/2024] [Accepted: 06/14/2024] [Indexed: 07/20/2024] Open
Abstract
Recent outbreaks of highly pathogenic avian influenza have devastated poultry production across the United States, with more than 77 million birds culled in 2022-2024 alone. Wild waterfowl, including various invasive species, host numerous pathogens, including highly pathogenic avian influenza virus (HPAIV), and have been implicated as catalysts of disease outbreaks among native fauna and domestic birds. In major poultry-producing states like Arkansas, USA, where the poultry sector is responsible for significant economic activity (>$4 billion USD in 2022), understanding the risk of invasive waterfowl interactions with domestic poultry is critical. Here, we assessed the risk of invasive waterfowl-poultry interaction in Arkansas by comparing the density of poultry production sites (chicken houses) to areas of high habitat suitability for two invasive waterfowl species, (Egyptian Goose [Alopochen aegyptiaca] and Mute Swan [Cygnus olor]), known to host significant pathogens, including avian influenza viruses. The percentage of urban land cover was the most important habitat characteristic for both invasive waterfowl species. At the 95% confidence interval, chicken house densities in areas highly suitable for both species (Egyptian Goose = 0.91 ± 0.11 chicken houses/km2; Mute Swan = 0.61 ± 0.03 chicken houses/km2) were three to five times higher than chicken house densities across the state (0.17 ± 0.01 chicken houses/km2). We show that northwestern and western Arkansas, both areas of high importance for poultry production, are also at high risk of invasive waterfowl presence. Our results suggest that targeted monitoring efforts for waterfowl-poultry contact in these areas could help mitigate the risk of avian pathogen exposure in Arkansas and similar regions with high poultry production.
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Affiliation(s)
- Reilly T. Jackson
- Department of Biological SciencesUniversity of ArkansasFayettevilleArkansasUSA
| | | | - Chris Burkhart
- Department of Biological SciencesUniversity of ArkansasFayettevilleArkansasUSA
| | - Julia Schneck
- Department of Biological SciencesUniversity of ArkansasFayettevilleArkansasUSA
| | - Grant Kelly
- Department of Biological SciencesUniversity of ArkansasFayettevilleArkansasUSA
| | - Caleb P. Roberts
- U.S. Geological Survey, Arkansas Fish and Wildlife Cooperative Research UnitUniversity of ArkansasFayettevilleArkansasUSA
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5
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Tammes P. Spread of avian influenza among poultry specialists in England during winter 2022/23: National poultry housing order and environmental drivers. DIALOGUES IN HEALTH 2024; 4:100165. [PMID: 38516217 PMCID: PMC10954017 DOI: 10.1016/j.dialog.2024.100165] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/08/2023] [Revised: 12/19/2023] [Accepted: 01/03/2024] [Indexed: 03/23/2024]
Abstract
Purpose To examine the impact of the national poultry housing order the UK government introduced on 7 November 2022 on the spreading of the avian influenza virus among poultry premises. Methods A longitudinal design with 15 weeks of infected poultry specialist incidence rates per 100 poultry specialists during the 2022/23 winter for 8 English regions. A multilevel regression model was used to analyse repeated measurements. Time was level-1 unit and regions level-2 unit resulting in 120 observations. Random intercept models included interactions between housing order and weekly infected wild birds, poultry density, or weekly average temperatures divided into terciles. In models where these variables were not included as an interaction term they were introduced as confounders. Results After the introduction of the housing order, it took 3 weeks for a considerable reduction in poultry specialist incidence rates. Reduction in incidence rates was strongest in regions with highest poultry density, from 1.27 (95%CI 0.99 to 1.56) to 0.30 (95%CI 0.09 to 0.52). Considerable reductions were also seen in regions with most detected infected wild birds. Conclusion The housing order was successful in reducing infected poultry specialist incidence rates three weeks after its introduction. Strongest impact in regions with highest poultry density.
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Affiliation(s)
- Peter Tammes
- University of Bristol, Bristol Medical School: Population Health Sciences, Bristol, United Kingdom
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6
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Giacinti JA, Robinson SJ, Sharp CM, Provencher JF, Pearl DL, Stevens B, Nituch L, Brook RW, Jardine CM. Assessing avian influenza surveillance intensity in wild birds using a One Health lens. One Health 2024; 18:100760. [PMID: 38832079 PMCID: PMC11145394 DOI: 10.1016/j.onehlt.2024.100760] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2024] [Accepted: 05/14/2024] [Indexed: 06/05/2024] Open
Abstract
Wildlife disease surveillance, particularly for pathogens with zoonotic potential such as Highly Pathogenic Avian Influenza Virus (HPAIV), is critical to facilitate situational awareness, inform risk, and guide communication and response efforts within a One Health framework. This study evaluates the intensity of avian influenza virus (AIV) surveillance in Ontario's wild bird population following the 2021 H5N1 incursion into Canada. Analyzing 2562 samples collected between November 1, 2021, and October 31, 2022, in Ontario, Canada, we identify spatial variations in surveillance intensity relative to human population density, poultry facility density, and wild mallard abundance. Using the spatial scan statistic, we pinpoint areas where public engagement, collaborations with Indigenous and non-Indigenous hunter/harvesters, and working with poultry producers, could augment Ontario's AIV wild bird surveillance program. Enhanced surveillance at these human-domestic animal-wildlife interfaces is a crucial element of a One Health approach to AIV surveillance. Ongoing assessment of our wild bird surveillance programs is essential for strategic planning and will allow us to refine approaches and generate results that continue to support the program's overarching objective of safeguarding the health of people, animals, and ecosystems.
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Affiliation(s)
- Jolene A. Giacinti
- Ecotoxicology and Wildlife Health Division, Science and Technology Branch, Environment and Climate Change Canada, Government of Canada, Ottawa, Ontario, Canada
| | - Sarah J. Robinson
- Department of Pathobiology, Ontario Veterinary College, University of Guelph, Guelph, Ontario, Canada
- Canadian Wildlife Health Cooperative, Ontario Veterinary College, University of Guelph, Guelph, Ontario, Canada
| | - Christopher M. Sharp
- Ontario Region Wildlife and Habitat Assessment Section, Canadian Wildlife Service, Environment and Climate Change Canada, Government of Canada, Ottawa, Ontario, Canada
| | - Jennifer F. Provencher
- Ecotoxicology and Wildlife Health Division, Science and Technology Branch, Environment and Climate Change Canada, Government of Canada, Ottawa, Ontario, Canada
| | - David L. Pearl
- Department of Population Medicine, Ontario Veterinary College, University of Guelph, Guelph, Ontario, Canada
| | - Brian Stevens
- Canadian Wildlife Health Cooperative, Ontario Veterinary College, University of Guelph, Guelph, Ontario, Canada
| | - Larissa Nituch
- Wildlife Research and Monitoring Section, Ontario Ministry of Natural Resources and Forestry, Trent University, Peterborough, Ontario, Canada
| | - Rodney W. Brook
- Wildlife Research and Monitoring Section, Ontario Ministry of Natural Resources and Forestry, Trent University, Peterborough, Ontario, Canada
| | - Claire M. Jardine
- Department of Pathobiology, Ontario Veterinary College, University of Guelph, Guelph, Ontario, Canada
- Canadian Wildlife Health Cooperative, Ontario Veterinary College, University of Guelph, Guelph, Ontario, Canada
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7
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Wolters WJ, Vernooij JCM, Spliethof TM, Wiegel J, Elbers ARW, Spierenburg MAH, Stegeman JA, Velkers FC. Comparison of the Clinical Manifestation of HPAI H5Nx in Different Poultry Types in the Netherlands, 2014-2022. Pathogens 2024; 13:280. [PMID: 38668235 PMCID: PMC11055007 DOI: 10.3390/pathogens13040280] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2024] [Revised: 03/04/2024] [Accepted: 03/21/2024] [Indexed: 04/29/2024] Open
Abstract
This study describes clinical manifestations of highly pathogenic avian influenza (HPAI) H5N1, H5N8 and H5N6 outbreaks between 2014 and 2018 and 2020 and 2022 in the Netherlands for different poultry types and age groups. Adult duck (breeder) farms and juvenile chicken (broiler and laying pullet) farms were not diagnosed before 2020. Outbreaks in ducks decreased in 2020-2022 vs. 2014-2018, but increased for meat-type poultry. Neurological, locomotor and reproductive tract signs were often observed in ducks, whereas laying- and meat-type poultry more often showed mucosal membrane and skin signs, including cyanosis and hemorrhagic conjunctiva. Juveniles (chickens and ducks) showed neurological and locomotor signs more often than adults. Diarrhea occurred more often in adult chickens and juvenile ducks. Mortality increased exponentially within four days before notification in chickens and ducks, with a more fluctuating trend in ducks and meat-type poultry than in layers. For ducks, a mortality ratio (MR) > 3, compared to the average mortality of the previous week, was reached less often than in chickens. A lower percentage of laying flocks with MR > 3 was found for 2020-2022 vs. 2014-2018, but without significant differences in clinical signs. This study provides a basis for improvements in mortality- and clinical-sign-based early warning criteria, especially for juvenile chickens and ducks.
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Affiliation(s)
- Wendy J. Wolters
- Department of Population Health Sciences, Faculty of Veterinary Medicine, Utrecht University, 3584 CL Utrecht, The Netherlands; (W.J.W.); (J.C.M.V.)
| | - J. C. M. Vernooij
- Department of Population Health Sciences, Faculty of Veterinary Medicine, Utrecht University, 3584 CL Utrecht, The Netherlands; (W.J.W.); (J.C.M.V.)
| | - Thomas M. Spliethof
- Division of Pathology, Department of Biomolecular Health Sciences, Faculty of Veterinary Medicine, Utrecht University, 3584 CS Utrecht, The Netherlands;
| | | | - Armin R. W. Elbers
- Department of Epidemiology, Bioinformatics, Animal Studies and Vaccine Development, Wageningen Bioveterinary Research, 8200 AB Lelystad, The Netherlands;
| | | | - J. Arjan Stegeman
- Department of Population Health Sciences, Faculty of Veterinary Medicine, Utrecht University, 3584 CL Utrecht, The Netherlands; (W.J.W.); (J.C.M.V.)
| | - Francisca C. Velkers
- Department of Population Health Sciences, Faculty of Veterinary Medicine, Utrecht University, 3584 CL Utrecht, The Netherlands; (W.J.W.); (J.C.M.V.)
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8
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Liu Y, Kjær LJ, Boklund AE, Hjulsager CK, Larsen LE, Kirkeby CT. Risk factors for avian influenza in Danish poultry and wild birds during the epidemic from June 2020 to May 2021. Front Vet Sci 2024; 11:1358995. [PMID: 38450025 PMCID: PMC10914952 DOI: 10.3389/fvets.2024.1358995] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2023] [Accepted: 02/12/2024] [Indexed: 03/08/2024] Open
Abstract
Exploring the risk factors of avian influenza (AI) occurrence helps us to monitor and control the disease. Since late 2020, the number of avian influenza outbreaks in domestic and wild birds has increased in most European countries, including Denmark. This study was conducted to identify potential risk factors for wild birds and poultry during the epidemic in 2020/2021 in Denmark. Using Danish AI surveillance data of actively surveyed poultry and passively surveyed wild birds from June 2020 to May 2021, we calculated geographical attributes for bird locations and assessed the potential risk factors of AI detections using logistic regression analyses. 4% of actively surveyed poultry and 39% of passively surveyed wild birds were detected with AI circulating or ongoing at the time. Of these, 10 and 99% tested positive for the H5/H7 AI subtypes, respectively. Our analyses did not find any statistically significant risk factors for actively surveyed poultry within the dataset. For passively surveyed wild birds, bird species belonging to the Anseriformes order had a higher risk of being AI virus positive than five other taxonomic bird orders, and Galliformes were of higher risk than two other taxonomic bird orders. Besides, every 1 km increase in the distance to wetlands was associated with a 5.18% decrease in the risk of being AI positive (OR (odds ratio) 0.95, 95% CI 0.91, 0.99), when all other variables were kept constant. Overall, bird orders and distance to wetlands were associated with the occurrence of AI. The findings may provide targets for surveillance strategies using limited resources and assist in risk-based surveillance during epidemics.
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Affiliation(s)
- Yangfan Liu
- Department of Veterinary and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Frederiksberg, Denmark
| | - Lene Jung Kjær
- Department of Veterinary and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Frederiksberg, Denmark
| | - Anette Ella Boklund
- Department of Veterinary and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Frederiksberg, Denmark
| | | | - Lars Erik Larsen
- Department of Veterinary and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Frederiksberg, Denmark
| | - Carsten Thure Kirkeby
- Department of Veterinary and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Frederiksberg, Denmark
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9
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Nagy A, Stará M, Černíková L, Kličková E, Horák O, Hofmannová L, Sedlák K. Enzootic Circulation, Massive Gull Mortality and Poultry Outbreaks during the 2022/2023 High-Pathogenicity Avian Influenza H5N1 Season in the Czech Republic. Viruses 2024; 16:221. [PMID: 38399998 PMCID: PMC10892573 DOI: 10.3390/v16020221] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2023] [Revised: 01/25/2024] [Accepted: 01/26/2024] [Indexed: 02/25/2024] Open
Abstract
In 2022/2023, Europe experienced its third consecutive season of high-pathogenicity avian influenza. During this period, the Czech Republic was again severely affected. For the first time, the number of culled birds approached one million, which was three times higher than in previous seasons. In parallel to the outbreaks in poultry, mass die-offs of gulls were also observed. In the present study, we performed whole-genome sequencing and phylogenetic analysis of 137 H5N1 strains collected in the Czech Republic in 2022/2023 (94.6% of all outbreaks or locations). The analysis revealed four distinct genotypes: AB, CH, BB and AF. Phylogenetic analysis suggested that the AF genotype persisted from the previous H5N1 season without reassortment. In addition, the genotype BB, which was detected mainly in gulls, showed a noticeable strain diversity at the local level. This virus was also responsible for a single outbreak in commercially bred turkeys. Finally, an interesting spatio-temporal cluster with three co-circulating H5N1 genotypes, AB, CH and AF, was identified with no evidence of intrasubtype reassortment. Highly sensitive molecular surveillance and the timely sharing of genomic sequences and associated metadata could greatly assist in tracking the spread and detecting molecular changes associated with the increased virulence of this potentially zoonotic pathogen.
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Affiliation(s)
- Alexander Nagy
- State Veterinary Institute Prague, Sídlištní 136/24, 165 03 Prague, Czech Republic; (M.S.); (L.Č.); (E.K.); (O.H.); (L.H.); (K.S.)
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10
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Ferreri LM, Carnaccini S, Olivera V, Pereda A, Rajao D, Perez DR. South American H4N2 influenza A virus improved replication in chicken trachea after low number of passages. Front Vet Sci 2023; 10:1182550. [PMID: 37323837 PMCID: PMC10264679 DOI: 10.3389/fvets.2023.1182550] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2023] [Accepted: 05/03/2023] [Indexed: 06/17/2023] Open
Abstract
Introduction of influenza A viruses (FLUAV) into poultry from waterfowl is frequent, producing economic burden and increasing the probability of human infections. We have previously described the presence of FLUAV in wild birds in Argentina with unique evolutionary trajectories belonging to a South American lineage different from the North American and Eurasian lineages. Adaptability of this South American lineage FLUAV to poultry species is still poorly understood. In the present report, we evaluated the capacity of an H4N2 FLUAV from the South American lineage to adapt to chickens after low number of passages. We found that five mutations were acquired after five passages in 3-days-old chickens. These mutations produced a virus with better infectivity in ex vivo trachea explants but overall lower infection in lung explants. Infection of 3-week-old chickens persisted for a longer period and was detected in more tissues than the parental virus, suggesting adaptation of the H4N2 influenza A virus to chicken.
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Affiliation(s)
- Lucas M. Ferreri
- Department of Population Health, Poultry Diagnostic and Research Center, College of Veterinary Medicine, University of Georgia, Athens, GA, United States
- Instituto de Virologia CICVyA, Instituto Nacional de Technologia Agropecuaria (INTA), Castelar, Buenos Aires, Argentina
| | - Silvia Carnaccini
- Department of Population Health, Poultry Diagnostic and Research Center, College of Veterinary Medicine, University of Georgia, Athens, GA, United States
| | - Valeria Olivera
- Instituto de Virologia CICVyA, Instituto Nacional de Technologia Agropecuaria (INTA), Castelar, Buenos Aires, Argentina
| | - Ariel Pereda
- Programa Nacional de Sanidad Animal, Instituto Nacional de Technología Agropecuária (INTA), Castelar, Buenos Aires, Argentina
| | - Daniela Rajao
- Department of Population Health, Poultry Diagnostic and Research Center, College of Veterinary Medicine, University of Georgia, Athens, GA, United States
| | - Daniel R. Perez
- Department of Population Health, Poultry Diagnostic and Research Center, College of Veterinary Medicine, University of Georgia, Athens, GA, United States
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11
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A Generic Risk Assessment Model for Animal Disease Entry through Wildlife: The Example of Highly Pathogenic Avian Influenza and African Swine Fever in The Netherlands. Transbound Emerg Dis 2023. [DOI: 10.1155/2023/9811141] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/25/2023]
Abstract
Animal diseases can enter countries or regions through the movements of infected wildlife. A generic risk model would allow to quantify the risk of entry via this introduction route for different diseases and wildlife species, despite the vast variety in both, and help policy-makers to make informed decisions. Here, we propose such a generic risk assessment model and illustrate its application by assessing the risk of entry of African swine fever (ASF) through wild boar and highly pathogenic avian influenza (HPAI) through wild birds for the Netherlands between 2014–2021. We used disease outbreak data and abstracted movement patterns to populate a stochastic risk model. We found that the entry risk of HPAI fluctuated between the years, with a peak in 2021. In that year, we estimated the number of infected birds to reach the Dutch border by wild bird migration at 273 (95% uncertainty interval: 254–290). The probability that ASF outbreaks that occurred between 2014 and 2021 reached the Dutch border through wild boar movement was very low throughout the whole period; only the upper confidence bound indicated a small entry risk. On a yearly scale, the predicted entry risk for HPAI correlated well with the number of observed outbreaks. In conclusion, we present a generic and flexible framework to assess the entry risk of disease through wildlife. The model allows rapid and transparent estimation of the entry risk for diverse diseases and wildlife species. The modular structure of the model allows for adding nuance and complexity when required or when more data becomes available.
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12
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McDuie F, Matchett EL, Prosser DJ, Takekawa JY, Pitesky ME, Lorenz AA, McCuen MM, T OC, Ackerman JT, De La Cruz SEW, Casazza ML. Pathways for avian influenza virus spread: GPS reveals wild waterfowl in commercial livestock facilities and connectivity with the natural wetland landscape. Transbound Emerg Dis 2022; 69:2898-2912. [PMID: 34974641 PMCID: PMC9788224 DOI: 10.1111/tbed.14445] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2021] [Revised: 12/16/2021] [Accepted: 12/18/2021] [Indexed: 12/30/2022]
Abstract
Zoonotic diseases are of considerable concern to the human population and viruses such as avian influenza (AIV) threaten food security, wildlife conservation and human health. Wild waterfowl and the natural wetlands they use are known AIV reservoirs, with birds capable of virus transmission to domestic poultry populations. While infection risk models have linked migration routes and AIV outbreaks, there is a limited understanding of wild waterfowl presence on commercial livestock facilities, and movement patterns linked to natural wetlands. We documented 11 wild waterfowl (three Anatidae species) in or near eight commercial livestock facilities in Washington and California with GPS telemetry data. Wild ducks used dairy and beef cattle feed lots and facility retention ponds during both day and night suggesting use for roosting and foraging. Two individuals (single locations) were observed inside poultry facility boundaries while using nearby wetlands. Ducks demonstrated high site fidelity, returning to the same areas of habitats (at livestock facilities and nearby wetlands), across months or years, showed strong connectivity with surrounding wetlands, and arrived from wetlands up to 1251 km away in the week prior. Telemetry data provides substantial advantages over observational data, allowing assessment of individual movement behaviour and wetland connectivity that has significant implications for outbreak management. Telemetry improves our understanding of risk factors for waterfowl-livestock virus transmission and helps identify factors associated with coincident space use at the wild waterfowl-domestic livestock interface. Our research suggests that even relatively small or isolated natural and artificial water or food sources in/near facilities increases the likelihood of attracting waterfowl, which has important consequences for managers attempting to minimize or prevent AIV outbreaks. Use and interpretation of telemetry data, especially in near-real-time, could provide key information for reducing virus transmission risk between waterfowl and livestock, improving protective barriers between wild and domestic species, and abating outbreaks.
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Affiliation(s)
- Fiona McDuie
- U.S. Geological Survey, Western Ecological Research Center, Dixon Field StationSuite D DixonCaliforniaUSA,San Jose State University Research FoundationMoss Landing Marine LaboratoriesCaliforniaUSA
| | - Elliott L Matchett
- U.S. Geological Survey, Western Ecological Research Center, Dixon Field StationSuite D DixonCaliforniaUSA
| | - Diann J Prosser
- U.S. Geological Survey, Eastern Ecological Science Center at the Patuxent Research Refuge (formerly USGS Patuxent Wildlife Research Center)LaurelMarylandUSA
| | - John Y Takekawa
- Suisun Resource Conservation District, Suisun Marsh ProgramWest SacramentoCaliforniaUSA
| | - Maurice E Pitesky
- University of California Davis, School of Veterinary Medicine, Poultry Health and Food Safety Epidemiology, One Shields AvenueDavisCaliforniaUSA
| | - Austen A Lorenz
- U.S. Geological Survey, Western Ecological Research Center, Dixon Field StationSuite D DixonCaliforniaUSA
| | - Madeline M McCuen
- U.S. Geological Survey, Western Ecological Research Center, Dixon Field StationSuite D DixonCaliforniaUSA
| | - Overton Cory T
- U.S. Geological Survey, Western Ecological Research Center, Dixon Field StationSuite D DixonCaliforniaUSA
| | - Joshua T Ackerman
- U.S. Geological Survey, Western Ecological Research Center, Dixon Field StationSuite D DixonCaliforniaUSA
| | - Susan E. W. De La Cruz
- U.S. Geological Survey Western Ecological Research Center, San Francisco Bay Estuary Field StationMoffett FieldCaliforniaUSA
| | - Michael L Casazza
- U.S. Geological Survey, Western Ecological Research Center, Dixon Field StationSuite D DixonCaliforniaUSA
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13
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Genotype Uniformity, Wild Bird-to-Poultry Transmissions, and Farm-to-Farm Carryover during the Spread of the Highly Pathogenic Avian Influenza H5N8 in the Czech Republic in 2021. Viruses 2022; 14:v14071411. [PMID: 35891391 PMCID: PMC9321741 DOI: 10.3390/v14071411] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2022] [Revised: 06/22/2022] [Accepted: 06/26/2022] [Indexed: 12/10/2022] Open
Abstract
In 2020–2021, the second massive dissemination of a highly pathogenic avian influenza of the H5Nx subtype occurred in Europe. During this period, the virus caused numerous outbreaks in poultry, including in the Czech Republic. In the present study, we provide an insight into the genetic variability of the Czech/2021 (CZE/2021) H5N8 viruses to determine the relationships between strains from wild and domestic poultry and to infer transmission routes between the affected flocks of commercial poultry. For this purpose, whole genome sequencing and phylogenetic analysis of 70 H5N8 genomes representing 79.7% of the cases were performed. All CZE/2021 H5N8 viruses belonged to the 2.3.4.4b H5 lineage and circulated without reassortment, retaining the A/chicken/Iraq/1/2020 H5N8-like genotype constellation. Phylogenetic analysis suggested the frequent local transmission of H5N8 from wild birds to backyard poultry and extensive spread among commercial poultry farms. In addition, the analysis suggested one cross-border transmission event. Indirect transmission via contaminated materials was considered the most likely source of infection. Improved biosecurity and increased collaboration between field veterinarians and the laboratory are essential to limit the local spread of the virus and to reveal and interrupt critical routes of infection.
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14
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Has Epizootic Become Enzootic? Evidence for a Fundamental Change in the Infection Dynamics of Highly Pathogenic Avian Influenza in Europe, 2021. mBio 2022; 13:e0060922. [PMID: 35726917 PMCID: PMC9426456 DOI: 10.1128/mbio.00609-22] [Citation(s) in RCA: 49] [Impact Index Per Article: 24.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Phylogenetic evidence from the recent resurgence of high-pathogenicity avian influenza (HPAI) virus subtype H5N1, clade 2.3.4.4b, observed in European wild birds and poultry since October 2021, suggests at least two different and distinct reservoirs. We propose contrasting hypotheses for this emergence: (i) resident viruses have been maintained, presumably in wild birds, in northern Europe throughout the summer of 2021 to cause some of the outbreaks that are part of the most recent autumn/winter 2021 epizootic, or (ii) further virus variants were reintroduced by migratory birds, and these two sources of reintroduction have driven the HPAI resurgence. Viruses from these two principal sources can be distinguished by their hemagglutinin genes, which segregate into two distinct sublineages (termed B1 and B2) within clade 2.3.4.4b, as well as their different internal gene compositions. The evidence of enzootic HPAI virus circulation during the summer of 2021 indicates a possible paradigm shift in the epidemiology of HPAI in Europe.
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15
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Lim JS, Soares Magalhães RJ, Chakma S, You DS, Lee KN, Pak SI, Kim E. Spatial epidemiology of highly pathogenic avian influenza subtype H5N6 in Gyeonggi Province, South Korea, 2016-2017. Transbound Emerg Dis 2022; 69:e2431-e2442. [PMID: 35526114 DOI: 10.1111/tbed.14587] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2021] [Revised: 03/31/2022] [Accepted: 05/03/2022] [Indexed: 11/29/2022]
Abstract
Over four months in the winter of 2016-2017, 343 poultry farms in South Korea reported highly pathogenic avian influenza (HPAI) H5N6 occurrences, leading to the culling of 40 million poultry. Our study aimed to describe the spatial epidemiology of the 2016-2017 HPAI H5N6 outbreak in Gyeonggi Province, the most affected area in South Korea, comprising 35.9% (123) of the HPAI-infected poultry farms, to identify spatial risk factors for the increased probability of HPAI H5N6 occurrence, and to delineate areas with the highest likelihood of infection among different target poultry species. Although the poultry density was risk factor for the all species, rice paddy was only identified as risk factor for chicken and duck farms, not other species farms suggesting different biosecurity measures are required depending on the species. Although spatial effects of HPAI occurrence tended to be clustered within 16 km, the cluster range was reduced to 7 km when considering the identified risk factors, indicating a more geographically focused outbreak response when taking risk factors into account. The areas identified with the highest likelihood of infection can provide evidence, with accessibility to policymakers, to improve risk-based surveillance for HPAI. Our findings provide epidemiological understanding helpful in improving surveillance activity and assisting in the design of more cost-effective intervention policies related to future HPAI outbreaks in South Korea. This article is protected by copyright. All rights reserved.
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Affiliation(s)
- Jun-Sik Lim
- College of Veterinary Medicine and Institute of Veterinary Science, Kangwon National University, Chuncheon, Republic of Korea.,IHAP, Université de Toulouse, INRAE, ENVT, Toulouse, France
| | - Ricardo J Soares Magalhães
- UQ Spatial Epidemiology Laboratory, School of Veterinary Science, The University of Queensland, Gatton, Australia.,Children's Health and Environment Program, Child Health Research Centre, The University of Queensland, Brisbane, Australia
| | - Shovon Chakma
- UQ Spatial Epidemiology Laboratory, School of Veterinary Science, The University of Queensland, Gatton, Australia
| | - Dae-Sung You
- Department of Public Health, Korea University Graduate School, Seoul, Republic of Korea
| | - Kwang-Nyeong Lee
- Avian Influenza Research and Diagnostic Division, Animal and Plant Quarantine Agency, Gimcheon, Republic of Korea
| | - Son-Il Pak
- College of Veterinary Medicine and Institute of Veterinary Science, Kangwon National University, Chuncheon, Republic of Korea
| | - Eutteum Kim
- College of Veterinary Medicine and Institute of Veterinary Science, Kangwon National University, Chuncheon, Republic of Korea
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16
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Schreuder J, de Knegt HJ, Velkers FC, Elbers ARW, Stahl J, Slaterus R, Stegeman JA, de Boer WF. Wild Bird Densities and Landscape Variables Predict Spatial Patterns in HPAI Outbreak Risk across The Netherlands. Pathogens 2022; 11:pathogens11050549. [PMID: 35631070 PMCID: PMC9143584 DOI: 10.3390/pathogens11050549] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2022] [Revised: 05/03/2022] [Accepted: 05/04/2022] [Indexed: 01/27/2023] Open
Abstract
Highly pathogenic avian influenza viruses’ (HPAIVs) transmission from wild birds to poultry occurs globally, threatening animal and public health. To predict the HPAI outbreak risk in relation to wild bird densities and land cover variables, we performed a case-control study of 26 HPAI outbreaks (cases) on Dutch poultry farms, each matched with four comparable controls. We trained machine learning classifiers to predict outbreak risk with predictors analyzed at different spatial scales. Of the 20 best explaining predictors, 17 consisted of densities of water-associated bird species, 2 of birds of prey, and 1 represented the surrounding landscape, i.e., agricultural cover. The spatial distribution of mallard (Anas platyrhynchos) contributed most to risk prediction, followed by mute swan (Cygnus olor), common kestrel (Falco tinnunculus) and brant goose (Branta bernicla). The model successfully distinguished cases from controls, with an area under the receiver operating characteristic curve of 0.92, indicating accurate prediction of HPAI outbreak risk despite the limited numbers of cases. Different classification algorithms led to similar predictions, demonstrating robustness of the risk maps. These analyses and risk maps facilitate insights into the role of wild bird species and support prioritization of areas for surveillance, biosecurity measures and establishments of new poultry farms to reduce HPAI outbreak risks.
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Affiliation(s)
- Janneke Schreuder
- Department of Population Health Sciences, Faculty of Veterinary Medicine, Utrecht University, 3584 CL Utrecht, The Netherlands; (J.S.); (J.A.S.)
- Wildlife Ecology and Conservation Group, Wageningen University & Research, 6708 PB Wageningen, The Netherlands; (H.J.d.K.); (W.F.d.B.)
| | - Henrik J. de Knegt
- Wildlife Ecology and Conservation Group, Wageningen University & Research, 6708 PB Wageningen, The Netherlands; (H.J.d.K.); (W.F.d.B.)
| | - Francisca C. Velkers
- Department of Population Health Sciences, Faculty of Veterinary Medicine, Utrecht University, 3584 CL Utrecht, The Netherlands; (J.S.); (J.A.S.)
- Correspondence: ; Tel.: +31-30-253-1248
| | - Armin R. W. Elbers
- Department of Epidemiology, Bioinformatics and Animal Models, Wageningen Bioveterinary Research, 8221 RA Lelystad, The Netherlands;
| | - Julia Stahl
- Sovon, Dutch Centre for Field Ornithology, 6525 ED Nijmegen, The Netherlands; (J.S.); (R.S.)
| | - Roy Slaterus
- Sovon, Dutch Centre for Field Ornithology, 6525 ED Nijmegen, The Netherlands; (J.S.); (R.S.)
| | - J. Arjan Stegeman
- Department of Population Health Sciences, Faculty of Veterinary Medicine, Utrecht University, 3584 CL Utrecht, The Netherlands; (J.S.); (J.A.S.)
| | - Willem F. de Boer
- Wildlife Ecology and Conservation Group, Wageningen University & Research, 6708 PB Wageningen, The Netherlands; (H.J.d.K.); (W.F.d.B.)
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17
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Hierarchical Clustering on Principal Components Analysis to Detect Clusters of Highly Pathogenic Avian Influenza Subtype H5N6 Epidemic across South Korean Poultry Farms. Symmetry (Basel) 2022. [DOI: 10.3390/sym14030598] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
Several outbreaks of highly pathogenic avian influenza (HPAI) in poultry have already been documented across the world, causing major economic losses. Research on diverse perspectives for future HPAI outbreaks’ prevention is desperately needed. It is critical to determine high-risk areas for HPAI outbreaks in order to develop high-level biosecurity in all such areas. The aim of this study is to identify high-risk areas as hotspots for high rates of birds’ infection and mortality and culling. We used “hierarchical clustering on principal components” (HCPC) to classify infected poultry farms in South Korea based on the point prevalence rate, infections, and deaths in susceptible birds. The linear combination of the original predictors was determined using “principal component analysis (PCA)”. Based on PCA, we applied the hierarchical clustering algorithm, which divided the data into four clusters based on the dissimilarity matrix. These four groups of poultry farms were identified on the basis of five variables. According to the findings based on the HCPC method, poultry farms in “cluster 4” had significantly higher average bird infections with high mortality when compared to other clusters. Similarly, the poultry farms in “cluster 2” had robust average bird culling in place to limit bird infectivity and mortality due to a high number of susceptible birds. The poultry farms belonging to “cluster 3” had a significantly higher average point prevalence rate of HPAI H5N6 cases than the rest of the clusters. Based on this study, it is recommended that poultry farms with a high number of infections and mortality in susceptible birds should implement proper biosecurity management to control HPAI infections while avoiding the culling of a large number of birds.
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18
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Makagon MM, Riber AB. Setting research driven duck-welfare standards: a systematic review of Pekin duck welfare research. Poult Sci 2022; 101:101614. [PMID: 35042179 PMCID: PMC8777151 DOI: 10.1016/j.psj.2021.101614] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2021] [Revised: 11/14/2021] [Accepted: 11/15/2021] [Indexed: 01/15/2023] Open
Abstract
Globally, the production of Pekin ducks for meat and eggs is considerable, with an estimated >200 million ducks slaughtered yearly for their meat in the United States and the European Union alone. However, despite the size of the Pekin duck industries, there is a lack of research-based guidance regarding the welfare of the ducks. The purpose of this systematic review is to examine and summarize available scientific literature related to the welfare of Pekin ducks raised on commercial farms for meat and eggs. Specifically, we aimed to identify topics where sufficient literature exists to support best-practice duck welfare recommendations, as well as further research needs. The literature search targeted original research papers and review articles published in English. Six pre-establish inclusion/exclusion criteria were applied, yielding 63 publications. We summarized their content based their main topic of focus. For all original studies, we additionally recorded the country where the study was executed, scale of the project (commercial or experimental barns), general information about the housing system and management (waterers, flooring, ventilation, group size, and space allowance), and the types of outcome variables collected. We begin with an overview of key publication trends. We then synthesize and discuss welfare outcomes related to key housing/management decisions: bathing water, flooring and litter, stocking density and space availability, ventilation/air quality, lighting, outdoor access, and for egg laying birds the availability of nest boxes. Throughout, we outline specific research gaps, as well as overarching research needs.
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Affiliation(s)
- Maja M Makagon
- Center for Animal Welfare, Department of Animal Science, University of California-Davis, Davis, CA 95618, USA.
| | - Anja B Riber
- Section Welfare, Department of Animal Science, Aarhus University, Tjele, Denmark
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19
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Bogach M, Paliy A, Liulin P, Bohach O, Palii A. Endoparasitoses of the Eurasian collared dove (Streptopelia decaocto) on the northern Black Sea coast of Ukraine. BIOSYSTEMS DIVERSITY 2021. [DOI: 10.15421/10.15421/012143] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022] Open
Abstract
One of the main tasks of ecological parasitology at the present stage is to determine patterns of spread of invasive diseases of poultry in the environment through a thorough epidemiological examination, as well as to determine the main directions and factors of spread of parasites in Ukraine. Some pigeon health problems can affect their populations, but parasitic infections play an important role. Our research found that 83.3% of Eurasian collared doves examined (Streptopelia decaocto) were affected by endoparasites. The commonest helminths were Raillietina spp. with the average invasion intensity of 4.9 ± 1.3 specimens/ind., Baruscapillaria spp. and Ascaridia columbae with an invasion intensity of 4.6 ± 1.5 and 3.7 ± 2.1 specimens/ind., respectively. The commonest cestodes were Raillietina spp. with the extent of invasion of 52.2% and Davainea proglottina – 6.7%. The Amoebotaenia cuneata cestodes were recorded in 3 (3.3%) doves, and Echinolepis carioca – only in 2 (2.2%) doves. Six doves (6.7%) were infected with the nematode Ascaridia columbae and 5 (5.6%) – Baruscapillaria spp. Eimerian oocysts were found in 9 (10%) collared doves, and Trichomonas gallinae was recorded in 15 (16.7%) birds. According to the results of helminthological autopsy and identification of the isolated pathogens, 8 varieties of mixinvasions were identified. In association with the Rayetins, there were the protozoa Eimeria spp. and Trichomonas gallinae and the nematode Ascaridia columbae. Two-component invasions were registered in 78.6% of doves, three-component infestations in 14.3% and four-component infestations in 7.1% of birds. Mixed infection with Raillietina spp. + Ascaridia columbae was found in the small intestine of Streptopelia decaocto, which was also pathomorphologically observed to have catarrhal-hemorrhagic enteritis, which was accompanied by the formation of a large number of spotted hemorrhages on the mucous membrane, and in the places of attachment of cestodes - necrotic-caseous areas. Temperature and other weather conditions such as humidity, precipitation, etc. of the northern Black Sea coast affect the population size of intermediate host cestodes. Continuous monitoring of invasive diseases of pigeons of different species will help to take the necessary preventive measures against endoparasitoses of birds.
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20
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Bogach M, Paliy A, Liulin P, Bohach O, Palii A. Endoparasitoses of the Eurasian collared dove (Streptopelia decaocto) on the northern Black Sea coast of Ukraine. BIOSYSTEMS DIVERSITY 2021. [DOI: 10.15421/012143] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022] Open
Abstract
One of the main tasks of ecological parasitology at the present stage is to determine patterns of spread of invasive diseases of poultry in the environment through a thorough epidemiological examination, as well as to determine the main directions and factors of spread of parasites in Ukraine. Some pigeon health problems can affect their populations, but parasitic infections play an important role. Our research found that 83.3% of Eurasian collared doves examined (Streptopelia decaocto) were affected by endoparasites. The commonest helminths were Raillietina spp. with the average invasion intensity of 4.9 ± 1.3 specimens/ind., Baruscapillaria spp. and Ascaridia columbae with an invasion intensity of 4.6 ± 1.5 and 3.7 ± 2.1 specimens/ind., respectively. The commonest cestodes were Raillietina spp. with the extent of invasion of 52.2% and Davainea proglottina – 6.7%. The Amoebotaenia cuneata cestodes were recorded in 3 (3.3%) doves, and Echinolepis carioca – only in 2 (2.2%) doves. Six doves (6.7%) were infected with the nematode Ascaridia columbae and 5 (5.6%) – Baruscapillaria spp. Eimerian oocysts were found in 9 (10%) collared doves, and Trichomonas gallinae was recorded in 15 (16.7%) birds. According to the results of helminthological autopsy and identification of the isolated pathogens, 8 varieties of mixinvasions were identified. In association with the Rayetins, there were the protozoa Eimeria spp. and Trichomonas gallinae and the nematode Ascaridia columbae. Two-component invasions were registered in 78.6% of doves, three-component infestations in 14.3% and four-component infestations in 7.1% of birds. Mixed infection with Raillietina spp. + Ascaridia columbae was found in the small intestine of Streptopelia decaocto, which was also pathomorphologically observed to have catarrhal-hemorrhagic enteritis, which was accompanied by the formation of a large number of spotted hemorrhages on the mucous membrane, and in the places of attachment of cestodes - necrotic-caseous areas. Temperature and other weather conditions such as humidity, precipitation, etc. of the northern Black Sea coast affect the population size of intermediate host cestodes. Continuous monitoring of invasive diseases of pigeons of different species will help to take the necessary preventive measures against endoparasitoses of birds.
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21
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Avian Influenza in Wild Birds and Poultry: Dissemination Pathways, Monitoring Methods, and Virus Ecology. Pathogens 2021; 10:pathogens10050630. [PMID: 34065291 PMCID: PMC8161317 DOI: 10.3390/pathogens10050630] [Citation(s) in RCA: 49] [Impact Index Per Article: 16.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2021] [Revised: 05/13/2021] [Accepted: 05/14/2021] [Indexed: 12/21/2022] Open
Abstract
Avian influenza is one of the largest known threats to domestic poultry. Influenza outbreaks on poultry farms typically lead to the complete slaughter of the entire domestic bird population, causing severe economic losses worldwide. Moreover, there are highly pathogenic avian influenza (HPAI) strains that are able to infect the swine or human population in addition to their primary avian host and, as such, have the potential of being a global zoonotic and pandemic threat. Migratory birds, especially waterfowl, are a natural reservoir of the avian influenza virus; they carry and exchange different virus strains along their migration routes, leading to antigenic drift and antigenic shift, which results in the emergence of novel HPAI viruses. This requires monitoring over time and in different locations to allow for the upkeep of relevant knowledge on avian influenza virus evolution and the prevention of novel epizootic and epidemic outbreaks. In this review, we assess the role of migratory birds in the spread and introduction of influenza strains on a global level, based on recent data. Our analysis sheds light on the details of viral dissemination linked to avian migration, the viral exchange between migratory waterfowl and domestic poultry, virus ecology in general, and viral evolution as a process tightly linked to bird migration. We also provide insight into methods used to detect and quantify avian influenza in the wild. This review may be beneficial for the influenza research community and may pave the way to novel strategies of avian influenza and HPAI zoonosis outbreak monitoring and prevention.
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22
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Zhang Q, Mei X, Zhang C, Li J, Chang N, Aji D, Shi W, Bi Y, Ma Z. Novel reassortant 2.3.4.4B H5N6 highly pathogenic avian influenza viruses circulating among wild, domestic birds in Xinjiang, Northwest China. J Vet Sci 2021; 22:e43. [PMID: 34170087 PMCID: PMC8318794 DOI: 10.4142/jvs.2021.22.e43] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2021] [Revised: 04/18/2021] [Accepted: 04/28/2021] [Indexed: 12/27/2022] Open
Abstract
Background The H5 avian influenza viruses (AIVs) of clade 2.3.4.4 circulate in wild and domestic birds worldwide. In 2017, nine strains of H5N6 AIVs were isolated from aquatic poultry in Xinjiang, Northwest China. Objectives This study aimed to analyze the origin, reassortment, and mutations of the AIV isolates. Methods AIVs were isolated from oropharyngeal and cloacal swabs of poultry. Identification was accomplished by inoculating isolates into embryonated chicken eggs and performing hemagglutination tests and reverse transcription polymerase chain reaction (RT-PCR). The viral genomes were amplified with RT-PCR and then sequenced. The sequence alignment, phylogenetic, and molecular characteristic analyses were performed by using bioinformatic software. Results Nine isolates originated from the same ancestor. The viral HA gene belonged to clade 2.3.4.4B, while the NA gene had a close phylogenetic relationship with the 2.3.4.4C H5N6 highly pathogenic avian influenza viruses (HPAIVs) isolated from shoveler ducks in Ningxia in 2015. The NP gene was grouped into an independent subcluster within the 2.3.4.4B H5N8 AIVs, and the remaining six genes all had close phylogenetic relationships with the 2.3.4.4B H5N8 HPAIVs isolated from the wild birds in China, Egypt, Uganda, Cameroon, and India in 2016–2017, Multiple basic amino acid residues associated with HPAIVs were located adjacent to the cleavage site of the HA protein. The nine isolates comprised reassortant 2.3.4.4B HPAIVs originating from 2.3.4.4B H5N8 and 2.3.4.4C H5N6 viruses in wild birds. Conclusions These results suggest that the Northern Tianshan Mountain wetlands in Xinjiang may have a key role in AIVs disseminating from Central China to the Eurasian continent and East African.
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Affiliation(s)
- Qian Zhang
- Xinjiang Key Laboratory of Biological Resources and Genetic Engineering, College of Life Science and Technology, Xinjiang University, Urumqi 830046, China
| | - Xindi Mei
- Xinjiang Key Laboratory of Biological Resources and Genetic Engineering, College of Life Science and Technology, Xinjiang University, Urumqi 830046, China
| | - Cheng Zhang
- Xinjiang Key Laboratory of Biological Resources and Genetic Engineering, College of Life Science and Technology, Xinjiang University, Urumqi 830046, China.,CAS Key Laboratory of Pathogenic Microbiology and Immunology, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Disease, Institute of Microbiology, Center for Influenza Research and Early-Warning (CASCIRE), Chinese Academy of Science, Beijing 100101, China
| | - Juan Li
- Key Laboratory of Etiology and Emerging infections Disease in Shandong First Medical University, Taian 271016, China
| | - Nana Chang
- Xinjiang Key Laboratory of Biological Resources and Genetic Engineering, College of Life Science and Technology, Xinjiang University, Urumqi 830046, China
| | - Dilihuma Aji
- Xinjiang Key Laboratory of Biological Resources and Genetic Engineering, College of Life Science and Technology, Xinjiang University, Urumqi 830046, China
| | - Weifeng Shi
- Key Laboratory of Etiology and Emerging infections Disease in Shandong First Medical University, Taian 271016, China
| | - Yuhai Bi
- Xinjiang Key Laboratory of Biological Resources and Genetic Engineering, College of Life Science and Technology, Xinjiang University, Urumqi 830046, China.,CAS Key Laboratory of Pathogenic Microbiology and Immunology, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Disease, Institute of Microbiology, Center for Influenza Research and Early-Warning (CASCIRE), Chinese Academy of Science, Beijing 100101, China.
| | - Zhenghai Ma
- Xinjiang Key Laboratory of Biological Resources and Genetic Engineering, College of Life Science and Technology, Xinjiang University, Urumqi 830046, China.
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23
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Highly Pathogenic Avian Influenza Viruses at the Wild-Domestic Bird Interface in Europe: Future Directions for Research and Surveillance. Viruses 2021; 13:v13020212. [PMID: 33573231 PMCID: PMC7912471 DOI: 10.3390/v13020212] [Citation(s) in RCA: 112] [Impact Index Per Article: 37.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2020] [Revised: 01/27/2021] [Accepted: 01/29/2021] [Indexed: 02/07/2023] Open
Abstract
Highly pathogenic avian influenza (HPAI) outbreaks in wild birds and poultry are no longer a rare phenomenon in Europe. In the past 15 years, HPAI outbreaks—in particular those caused by H5 viruses derived from the A/Goose/Guangdong/1/1996 lineage that emerged in southeast Asia in 1996—have been occuring with increasing frequency in Europe. Between 2005 and 2020, at least ten HPAI H5 incursions were identified in Europe resulting in mass mortalities among poultry and wild birds. Until 2009, the HPAI H5 virus outbreaks in Europe were caused by HPAI H5N1 clade 2.2 viruses, while from 2014 onwards HPAI H5 clade 2.3.4.4 viruses dominated outbreaks, with abundant genetic reassortments yielding subtypes H5N1, H5N2, H5N3, H5N4, H5N5, H5N6 and H5N8. The majority of HPAI H5 virus detections in wild and domestic birds within Europe coincide with southwest/westward fall migration and large local waterbird aggregations during wintering. In this review we provide an overview of HPAI H5 virus epidemiology, ecology and evolution at the interface between poultry and wild birds based on 15 years of avian influenza virus surveillance in Europe, and assess future directions for HPAI virus research and surveillance, including the integration of whole genome sequencing, host identification and avian ecology into risk-based surveillance and analyses.
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Velkers FC, Manders TTM, Vernooij JCM, Stahl J, Slaterus R, Stegeman JA. Association of wild bird densities around poultry farms with the risk of highly pathogenic avian influenza virus subtype H5N8 outbreaks in the Netherlands, 2016. Transbound Emerg Dis 2020; 68:76-87. [PMID: 32419342 PMCID: PMC8048466 DOI: 10.1111/tbed.13595] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2019] [Revised: 03/10/2020] [Accepted: 04/08/2020] [Indexed: 12/22/2022]
Abstract
Highly pathogenic (HP) avian influenza viruses (AIV) can spread globally through migratory birds and cause massive outbreaks in commercial poultry. AIV outbreaks have been associated with proximity to waterbodies, presence of waterfowl or wild bird cases near poultry farms. In this study, we compared densities of selected HPAI high‐risk wild bird species around 7 locations (H farms) infected with HPAIV H5N8 in the Netherlands in 2016–2017 to densities around 21 non‐infected reference farms. Nine reference farms were in low‐lying water‐rich areas (R‐W) and 12 in higher non‐water‐rich areas (R‐NW). Average monthly numbers/km2 of Eurasian wigeons, tufted ducks, Anatidae (ducks, geese and swans) and Laridae (gulls) were calculated between September and April in rings of 0–1, 1–3, 3–6 and 6–10 km around the farms. Linear mixed model analyses showed generally higher bird densities for H and R‐W compared to R‐NW farms between October and March. This was most striking for Eurasian wigeons, with in peak month December 105 (95% CI:17–642) and 40 (7–214) times higher densities around H and R‐W farms, respectively, compared to R‐NW farms. Increased densities around H farms for Eurasian wigeons and Anatidae were more pronounced for distances up to 10 km compared to 0–1 km that mostly consists of the farm yard, which is an unattractive habitat for waterfowl. This distance effect was not observed in gulls, nor in tufted ducks that live on large open waterbodies which are unlikely to be within 0–1 km of farms. This study provides insights into spatio‐temporal density dynamics of HPAI high‐risk birds around farms and their associations with poultry outbreaks. The outcomes indicate that knowledge of environmental and ecological drivers for wild bird presence and abundance may facilitate identification of priority areas for surveillance and biosecurity measures and decisions on establishments of poultry farms to reduce risk of HPAI outbreaks.
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Affiliation(s)
- Francisca C Velkers
- Department of Farm Animal Health, Faculty of Veterinary Medicine, Utrecht University, Utrecht, The Netherlands
| | - Thijs T M Manders
- Department of Farm Animal Health, Faculty of Veterinary Medicine, Utrecht University, Utrecht, The Netherlands
| | - Johannes C M Vernooij
- Department of Farm Animal Health, Faculty of Veterinary Medicine, Utrecht University, Utrecht, The Netherlands
| | - Julia Stahl
- Sovon, Dutch Center for Field Ornithology, Nijmegen, The Netherlands
| | - Roy Slaterus
- Sovon, Dutch Center for Field Ornithology, Nijmegen, The Netherlands
| | - J Arjan Stegeman
- Department of Farm Animal Health, Faculty of Veterinary Medicine, Utrecht University, Utrecht, The Netherlands
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