1
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Abbasi N, Chen K, Wong A, Bizheva K. Computational approach for correcting defocus and suppressing speckle noise in line-field optical coherence tomography images. BIOMEDICAL OPTICS EXPRESS 2024; 15:5491-5504. [PMID: 39296416 PMCID: PMC11407272 DOI: 10.1364/boe.530569] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/20/2024] [Revised: 07/12/2024] [Accepted: 08/14/2024] [Indexed: 09/21/2024]
Abstract
The trade-off between transverse resolution and depth-of-focus (DOF) typical for optical coherence tomography (OCT) systems based on conventional optics, prevents "single-shot" acquisition of volumetric OCT images with sustained high transverse resolution over the entire imaging depth. Computational approaches for correcting defocus and higher order aberrations in OCT images developed in the past require highly stable phase data, which poses a significant technological challenge. Here, we present an alternative computational approach to sharpening OCT images and reducing speckle noise, based on intensity OCT data. The novel algorithm uses non-local priors to model correlated speckle noise within a maximum a posteriori framework to generate sharp and noise-free images. The performance of the algorithm was tested on images of plant tissue (cucumber) and in-vivo healthy human cornea, acquired with line-field spectral domain OCT (LF-SD-OCT) systems. The novel algorithm effectively suppressed speckle noise and sharpened or recovered morphological features in the OCT images for depths up to 13×DOF (depth-of-focus) relative to the focal plane.
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Affiliation(s)
- Nima Abbasi
- Department of Systems Design Engineering, University of Waterloo, Waterloo, Ontario, Canada
| | - Keyu Chen
- Department of Physics and Astronomy, University of Waterloo, Waterloo, Ontario, Canada
| | - Alexander Wong
- Department of Systems Design Engineering, University of Waterloo, Waterloo, Ontario, Canada
| | - Kostadinka Bizheva
- Department of Systems Design Engineering, University of Waterloo, Waterloo, Ontario, Canada
- Department of Physics and Astronomy, University of Waterloo, Waterloo, Ontario, Canada
- School of Optometry and Vision Sciences, University of Waterloo, Waterloo, Ontario, Canada
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2
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Iyer RR, Yang L, Sorrells JE, Chaney EJ, Spillman DR, Boppart SA. Dispersion mismatch correction for evident chromatic anomaly in low coherence interferometry. APL PHOTONICS 2024; 9:076114. [PMID: 39072189 PMCID: PMC11273218 DOI: 10.1063/5.0207414] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/07/2024] [Accepted: 07/02/2024] [Indexed: 07/30/2024]
Abstract
The applications of ultrafast optics to biomedical microscopy have expanded rapidly in recent years, including interferometric techniques like optical coherence tomography and microscopy (OCT/OCM). The advances of ultra-high resolution OCT and the inclusion of OCT/OCM in multimodal systems combined with multiphoton microscopy have marked a transition from using pseudo-continuous broadband sources, such as superluminescent diodes, to ultrafast supercontinuum optical sources. We report anomalies in the dispersion profiles of low-coherence ultrafast pulses through long and non-identical arms of a Michelson interferometer that are well beyond group delay or third-order dispersions. This chromatic anomaly worsens the observed axial resolution and causes fringe artifacts in the reconstructed tomograms in OCT/OCM using traditional algorithms. We present DISpersion COmpensation Techniques for Evident Chromatic Anomalies (DISCOTECA) as a universal solution to address the problem of chromatic dispersion mismatch in interferometry, especially with ultrafast sources. First, we demonstrate the origin of these artifacts through the self-phase modulation of ultrafast pulses due to focusing elements in the beam path. Next, we present three solution paradigms for DISCOTECA: optical, optoelectronic, and computational, along with quantitative comparisons to traditional methods to highlight the improvements to the dynamic range and axial profile. We explain the piecewise reconstruction of the phase mismatch between the arms of the spectral-domain interferometer using a modified short-term Fourier transform algorithm inspired by spectroscopic OCT. Finally, we present a decision-making guide for evaluating the utility of DISCOTECA in interferometry and for the artifact-free reconstruction of OCT images using an ultrafast supercontinuum source for biomedical applications.
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Affiliation(s)
| | | | | | | | | | - Stephen A. Boppart
- Author to whom correspondence should be addressed: . Tel.: (217) 244-7479
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3
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Geng W, Fang Y, Bao C, Pan Z, Yue Y. Emission of five OAM dispersive waves in dispersion-engineered double-ring core fiber. Sci Rep 2024; 14:8474. [PMID: 38605163 PMCID: PMC11009397 DOI: 10.1038/s41598-024-57587-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2024] [Accepted: 03/19/2024] [Indexed: 04/13/2024] Open
Abstract
Beams carrying orbital angular momentum (OAM) have exhibited significant potential across various fields, such as metrology, image coding, and optical communications. High-performance broadband coherent OAM sources are critical to the operation of optical systems. The emission of dispersive waves facilitates the efficient transfer of energy to distant spectral domains while preserving the coherence among the generated frequency components. Light sources that maintain consistency over a wide range can increase the efficiency of optical communication systems and improve the measurement accuracy in imaging and metrology. In this work, we propose a germanium-doped double ring-core fiber for five OAM dispersive waves (DWs) generation. The OAM1,1 mode supported in the fiber exhibits three zero-dispersion wavelengths (ZDWs) located at 1275, 1720 and 2325 nm. When pumped under normal dispersion, the output spectrum undergoes broadening and exhibits five DWs, situated around 955, 1120, 1450, 2795 and 2965 nm, respectively. Concomitant with blue-shifted and red-shifted dispersive waves, the spectrum spans from 895 to 3050 nm with high coherence. The effect of the fiber and input pulse parameters on DWs generation, as well as the underlying dynamics of the dispersive wave generation process, are discussed. As expected, the number and location of DWs generated in the output spectrum have agreement with the prediction of the phase-matching condition. Overall, this multiple DWs generation method in the proposed fiber paves the way for developing efficient and coherent OAM light sources in fiber-based optical systems.
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Affiliation(s)
- Wenpu Geng
- Institute of Modern Optics, Nankai University, Tianjin, 300350, China
| | - Yuxi Fang
- Institute of Modern Optics, Nankai University, Tianjin, 300350, China
| | - Changjing Bao
- Department of Electrical Engineering, University of Southern California, Los Angeles, CA, 90089, USA
| | - Zhongqi Pan
- Department of Electrical & Computer Engineering, University of Louisiana at Lafayette, Lafayette, LA, 70504, USA
| | - Yang Yue
- School of Information and Communications Engineering, Xi'an Jiaotong University, Xi'an, 710049, China.
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4
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Nolte DD. Coherent light scattering from cellular dynamics in living tissues. REPORTS ON PROGRESS IN PHYSICS. PHYSICAL SOCIETY (GREAT BRITAIN) 2024; 87:036601. [PMID: 38433567 DOI: 10.1088/1361-6633/ad2229] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/01/2022] [Accepted: 01/24/2024] [Indexed: 03/05/2024]
Abstract
This review examines the biological physics of intracellular transport probed by the coherent optics of dynamic light scattering from optically thick living tissues. Cells and their constituents are in constant motion, composed of a broad range of speeds spanning many orders of magnitude that reflect the wide array of functions and mechanisms that maintain cellular health. From the organelle scale of tens of nanometers and upward in size, the motion inside living tissue is actively driven rather than thermal, propelled by the hydrolysis of bioenergetic molecules and the forces of molecular motors. Active transport can mimic the random walks of thermal Brownian motion, but mean-squared displacements are far from thermal equilibrium and can display anomalous diffusion through Lévy or fractional Brownian walks. Despite the average isotropic three-dimensional environment of cells and tissues, active cellular or intracellular transport of single light-scattering objects is often pseudo-one-dimensional, for instance as organelle displacement persists along cytoskeletal tracks or as membranes displace along the normal to cell surfaces, albeit isotropically oriented in three dimensions. Coherent light scattering is a natural tool to characterize such tissue dynamics because persistent directed transport induces Doppler shifts in the scattered light. The many frequency-shifted partial waves from the complex and dynamic media interfere to produce dynamic speckle that reveals tissue-scale processes through speckle contrast imaging and fluctuation spectroscopy. Low-coherence interferometry, dynamic optical coherence tomography, diffusing-wave spectroscopy, diffuse-correlation spectroscopy, differential dynamic microscopy and digital holography offer coherent detection methods that shed light on intracellular processes. In health-care applications, altered states of cellular health and disease display altered cellular motions that imprint on the statistical fluctuations of the scattered light. For instance, the efficacy of medical therapeutics can be monitored by measuring the changes they induce in the Doppler spectra of livingex vivocancer biopsies.
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Affiliation(s)
- David D Nolte
- Department of Physics and Astronomy, Purdue University, West Lafayette, IN 47907, United States of America
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5
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Klufts M, Jiménez AM, Lotz S, Bashir MA, Pfeiffer T, Mlynek A, Wieser W, Chamorovskiy A, Bradu A, Podoleanu A, Huber R. 828 kHz retinal imaging with an 840 nm Fourier domain mode locked laser. BIOMEDICAL OPTICS EXPRESS 2023; 14:6493-6508. [PMID: 38420314 PMCID: PMC10898573 DOI: 10.1364/boe.504302] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/31/2023] [Revised: 11/08/2023] [Accepted: 11/16/2023] [Indexed: 03/02/2024]
Abstract
This paper presents a Fourier domain mode locked (FDML) laser centered around 840 nm. It features a bidirectional sweep repetition rate of 828 kHz and a spectral bandwidth of 40 nm. An axial resolution of ∼9.9 µm in water and a 1.4 cm sensitivity roll-off are achieved. Utilizing a complex master-slave (CMS) recalibration method and due to a sufficiently high sensitivity of 84.6 dB, retinal layers of the human eye in-vivo can be resolved during optical coherence tomography (OCT) examination. The developed FDML laser enables acquisition rates of 3D-volumes with a size of 200 × 100 × 256 voxels in under 100 milliseconds. Detailed information on the FDML implementation, its challenging design tasks, and OCT images obtained with the laser are presented in this paper.
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Affiliation(s)
- Marie Klufts
- Institute of Biomedical Optics, University of Lübeck, Lübeck 23562, Germany
| | | | - Simon Lotz
- Institute of Biomedical Optics, University of Lübeck, Lübeck 23562, Germany
| | | | | | | | | | | | - Adrian Bradu
- School of Physical Sciences, University of Kent, Canterbury CT2 7NH, United Kingdom
| | - Adrian Podoleanu
- School of Physical Sciences, University of Kent, Canterbury CT2 7NH, United Kingdom
| | - Robert Huber
- Institute of Biomedical Optics, University of Lübeck, Lübeck 23562, Germany
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6
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Pattan HF, Liu X, Tankam P. Non-invasive in vivo imaging of human corneal microstructures with optical coherence microscopy. BIOMEDICAL OPTICS EXPRESS 2023; 14:4888-4900. [PMID: 37791273 PMCID: PMC10545177 DOI: 10.1364/boe.495242] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2023] [Revised: 08/06/2023] [Accepted: 08/16/2023] [Indexed: 10/05/2023]
Abstract
Non-invasive imaging systems with cellular-level resolution offer the opportunity to identify biomarkers of the early stage of corneal diseases, enabling early intervention, monitoring of disease progression, and evaluating treatment efficacy. In this study, a non-contact polarization-dependent optical coherence microscope (POCM) was developed to enable non-invasive in vivo imaging of human corneal microstructures. The system integrated quarter-wave plates into the sample and reference arms of the interferometer to enable deeper penetration of light in tissues as well as mitigate the strong specular reflection from the corneal surface. A common-path approach was adopted to enable control over the polarization in a free space configuration, thus alleviating the need for a broadband polarization-maintained fiber. The POCM achieved volumetric imaging of corneal microstructures, including endothelial cells over a field of view 0.5 × 0.5 mm2 with an almost isotropic resolution of ∼2.2 µm and a volume (500 × 500 × 2048 voxels) rate of 1 Hz. A self-interference approach between the corneal surface and underlying layers was also developed to lessen the corneal curvature and axial motion artifacts, thus enabling high-resolution imaging of microstructures in the anterior cornea, including squamous epithelial cells, wing epithelial cells, basal epithelial cells, sub-basal nerve plexus, and stromal keratocytes.
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Affiliation(s)
- Hadiya F. Pattan
- School of Optometry, Indiana University, Bloomington, IN, 47405, USA
| | - Xiao Liu
- School of Optometry, Indiana University, Bloomington, IN, 47405, USA
| | - Patrice Tankam
- School of Optometry, Indiana University, Bloomington, IN, 47405, USA
- Intelligent Systems Engineering, Luddy School of Informatics, Computing, and Engineering, Indiana University, Bloomington, IN, 47405, USA
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7
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Lu X, Gao Y, Chen J, Tan M, Qiu J. Long-Wavelength Near-Infrared Divalent Nickel-Activated Double-Perovskite Ba 2MgWO 6 Phosphor as Imaging for Human Fingers. ACS APPLIED MATERIALS & INTERFACES 2023; 15:39472-39479. [PMID: 37552864 DOI: 10.1021/acsami.3c04335] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/10/2023]
Abstract
Transmission near-infrared (NIR) imaging technology has great potential for biomedical imaging because of its lower water absorption coefficient and highly reduced photon scattering effect in biological tissues compared to visible light. The extent of biological tissue photon scattering is inversely proportional to wavelength; therefore, in principle, imaging with long-wavelength NIR helps improve the resolution of the optical image, but deep tissue high-resolution luminescence imaging is still very challenging technically. Here, we report the discovery of a Ba2MgWO6:Ni2+ double perovskite phosphor that emits broadband long-wavelength NIR (1200-2000 nm) under 365 nm near-ultraviolet (UV) excitation, with a full width at half-maximum of 255 nm. The luminescence quantum efficiency of the phosphor with optimized composition reached 16.67%. The analysis of the crystal structure of Ba2MgWO6:Ni2+ suggests that Ni2+ ions preferentially occupy the W6+ site in octahedrons with a weak crystal field, which leads to a large Stokes shift. An as-prepared long-wavelength NIR pc-LED device was built by packaging an optimized phosphor with a low-power near-UV-LED chip, which was tested to generate clear imaging of venous vessels in human fingers. These unique properties of the Ba2MgWO6:Ni2+ double perovskite phosphor makes it a promising application in the field of imaging sources for body tissue..
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Affiliation(s)
- Xirui Lu
- Faculty of Material Science and Engineering, Kunming University of Science and Technology, Kunming 650093, China
| | - Yuan Gao
- Faculty of Material Science and Engineering, Kunming University of Science and Technology, Kunming 650093, China
- Key Laboratory of Advanced Materials of Yunnan Province, Kunming 650093, China
| | - Jiayuan Chen
- Faculty of Material Science and Engineering, Kunming University of Science and Technology, Kunming 650093, China
| | - Mengdie Tan
- Faculty of Material Science and Engineering, Kunming University of Science and Technology, Kunming 650093, China
| | - Jianbei Qiu
- Faculty of Material Science and Engineering, Kunming University of Science and Technology, Kunming 650093, China
- Key Laboratory of Advanced Materials of Yunnan Province, Kunming 650093, China
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8
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Deng L, Fan Z, Chen B, Zhai H, He H, He C, Sun Y, Wang Y, Ma H. A Dual-Modality Imaging Method Based on Polarimetry and Second Harmonic Generation for Characterization and Evaluation of Skin Tissue Structures. Int J Mol Sci 2023; 24:ijms24044206. [PMID: 36835613 PMCID: PMC9966533 DOI: 10.3390/ijms24044206] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2023] [Revised: 02/15/2023] [Accepted: 02/17/2023] [Indexed: 02/22/2023] Open
Abstract
The characterization and evaluation of skin tissue structures are crucial for dermatological applications. Recently, Mueller matrix polarimetry and second harmonic generation microscopy have been widely used in skin tissue imaging due to their unique advantages. However, the features of layered skin tissue structures are too complicated to use a single imaging modality for achieving a comprehensive evaluation. In this study, we propose a dual-modality imaging method combining Mueller matrix polarimetry and second harmonic generation microscopy for quantitative characterization of skin tissue structures. It is demonstrated that the dual-modality method can well divide the mouse tail skin tissue specimens' images into three layers of stratum corneum, epidermis, and dermis. Then, to quantitatively analyze the structural features of different skin layers, the gray level co-occurrence matrix is adopted to provide various evaluating parameters after the image segmentations. Finally, to quantitatively measure the structural differences between damaged and normal skin areas, an index named Q-Health is defined based on cosine similarity and the gray-level co-occurrence matrix parameters of imaging results. The experiments confirm the effectiveness of the dual-modality imaging parameters for skin tissue structure discrimination and assessment. It shows the potential of the proposed method for dermatological practices and lays the foundation for further, in-depth evaluation of the health status of human skin.
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Affiliation(s)
- Liangyu Deng
- Guangdong Research Center of Polarization Imaging and Measurement Engineering Technology, Shenzhen Key Laboratory for Minimal Invasive Medical Technologies, Institute of Biopharmaceutical and Health Engineering, Tsinghua Shenzhen International Graduate School, Tsinghua University, Shenzhen 518055, China
| | - Zhipeng Fan
- Guangdong Research Center of Polarization Imaging and Measurement Engineering Technology, Shenzhen Key Laboratory for Minimal Invasive Medical Technologies, Institute of Biopharmaceutical and Health Engineering, Tsinghua Shenzhen International Graduate School, Tsinghua University, Shenzhen 518055, China
| | - Binguo Chen
- Guangdong Research Center of Polarization Imaging and Measurement Engineering Technology, Shenzhen Key Laboratory for Minimal Invasive Medical Technologies, Institute of Biopharmaceutical and Health Engineering, Tsinghua Shenzhen International Graduate School, Tsinghua University, Shenzhen 518055, China
- Department of Biomedical Engineering, Tsinghua University, Beijing 100084, China
| | - Haoyu Zhai
- Guangdong Research Center of Polarization Imaging and Measurement Engineering Technology, Shenzhen Key Laboratory for Minimal Invasive Medical Technologies, Institute of Biopharmaceutical and Health Engineering, Tsinghua Shenzhen International Graduate School, Tsinghua University, Shenzhen 518055, China
- Department of Biomedical Engineering, Tsinghua University, Beijing 100084, China
| | - Honghui He
- Guangdong Research Center of Polarization Imaging and Measurement Engineering Technology, Shenzhen Key Laboratory for Minimal Invasive Medical Technologies, Institute of Biopharmaceutical and Health Engineering, Tsinghua Shenzhen International Graduate School, Tsinghua University, Shenzhen 518055, China
- Correspondence: (H.H.); (C.H.)
| | - Chao He
- Department of Engineering Science, University of Oxford, Parks Road, Oxford OX1 3PJ, UK
- Correspondence: (H.H.); (C.H.)
| | - Yanan Sun
- Experimental Research Center, China Academy of Chinese Medical Sciences, Beijing 100700, China
| | - Yi Wang
- Experimental Research Center, China Academy of Chinese Medical Sciences, Beijing 100700, China
| | - Hui Ma
- Guangdong Research Center of Polarization Imaging and Measurement Engineering Technology, Shenzhen Key Laboratory for Minimal Invasive Medical Technologies, Institute of Biopharmaceutical and Health Engineering, Tsinghua Shenzhen International Graduate School, Tsinghua University, Shenzhen 518055, China
- Department of Physics, Tsinghua University, Beijing 100084, China
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Phase retardation and corneal sublayer thickness repeatability using ultrahigh-resolution polarization-sensitive OCT. J Cataract Refract Surg 2023; 49:76-83. [PMID: 36026712 DOI: 10.1097/j.jcrs.0000000000001033] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2021] [Accepted: 07/25/2022] [Indexed: 12/31/2022]
Abstract
PURPOSE To assess phase retardation and corneal sublayer thickness repeatability using ultrahigh-resolution polarization-sensitive optical coherence tomography (PS-OCT). SETTING Narayana Nethralaya Eye Hospital, Bangalore. DESIGN Observational. METHODS In this study, all eyes were imaged using a custom-built ultrahigh-resolution PS-OCT and high-resolution hybrid OCT (MS-39). The repeatability of phase retardation en face maps and corneal sublayer thickness profiles was evaluated. The reflectivity and phase retardation were calculated from the 2 orthogonal polarization channels to generate en face maps of phase retardation and corneal sublayer thicknesses. 3 consecutive measurements of all participants were acquired for each eye. For each measurement, the participant was asked to sit back and was realigned again. The repeatability was assessed using the intraclass correlation coefficient (ICC). RESULTS The study included 20 healthy eyes of 20 participants. The phase retardation en face maps showed preferential arrangement of collagen fibrils with least retardation in the apex and maximum retardation in the periphery. The phase retardation showed excellent repeatability (ICC >0.95) in all zones. The Bowman layer and stromal layer thicknesses were measured with excellent repeatability (ICC >0.93 and >0.99, respectively). Significant differences ( P < .05) in stromal layer thickness were observed between MS-39 and PS-OCT. The repeatability of epithelial thickness measurements was better with PS-OCT than MS-39. CONCLUSIONS The combinational assessment of corneal birefringence and sublayer thicknesses shows the advanced potential of ultrahigh-resolution PS-OCT in routine clinical practice over current OCT devices.
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10
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Han L, Tan B, Hosseinaee Z, Chen LK, Hileeto D, Bizheva K. Line-scanning SD-OCT for in-vivo, non-contact, volumetric, cellular resolution imaging of the human cornea and limbus. BIOMEDICAL OPTICS EXPRESS 2022; 13:4007-4020. [PMID: 35991928 PMCID: PMC9352278 DOI: 10.1364/boe.465916] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/07/2022] [Accepted: 06/08/2022] [Indexed: 05/12/2023]
Abstract
In-vivo, non-contact, volumetric imaging of the cellular and sub-cellular structure of the human cornea and limbus with optical coherence tomography (OCT) is challenging due to involuntary eye motion that introduces both motion artifacts and blur in the OCT images. Here we present the design of a line-scanning (LS) spectral-domain (SD) optical coherence tomography system that combines 2 × 3 × 1.7 µm (x, y, z) resolution in biological tissue with an image acquisition rate of ∼2,500 fps, and demonstrate its ability to image in-vivo and without contact with the tissue surface, the cellular structure of the human anterior segment tissues. Volumetric LS-SD-OCT images acquired over a field-of-view (FOV) of 0.7 mm × 1.4 mm reveal fine morphological details in the healthy human cornea, such as epithelial and endothelial cells, sub-basal nerves, as well as the cellular structure of the limbal crypts, the palisades of Vogt (POVs) and the blood microvasculature of the human limbus. LS-SD-OCT is a promising technology that can assist ophthalmologists with the early diagnostics and optimal treatment planning of ocular diseases affecting the human anterior eye.
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Affiliation(s)
- Le Han
- Department of Physics and Astronomy,
University of Waterloo, Waterloo, Ontario
N2L 3G1, Canada
- Contributed equally
| | - Bingyao Tan
- Department of Physics and Astronomy,
University of Waterloo, Waterloo, Ontario
N2L 3G1, Canada
- School of Chemical and Biomedical
Engineering, Nanyang Technological
University, 637460, Singapore
- SERI-NTU Advanced Ocular
Engineering (STANCE), 639798, Singapore
- Singapore Eye Research Institute,
Singapore National Eye Center, 169856,
Singapore
- Contributed equally
| | - Zohreh Hosseinaee
- Department of Physics and Astronomy,
University of Waterloo, Waterloo, Ontario
N2L 3G1, Canada
- Department of Systems Design Engineering,
University of Waterloo, Waterloo, Ontario
N2L 3G1, Canada
| | - Lin Kun Chen
- Department of Physics and Astronomy,
University of Waterloo, Waterloo, Ontario
N2L 3G1, Canada
| | - Denise Hileeto
- School of Optometry and Vision Science,
University of Waterloo, Waterloo, Ontario
N2L 3G1, Canada
| | - Kostadinka Bizheva
- Department of Physics and Astronomy,
University of Waterloo, Waterloo, Ontario
N2L 3G1, Canada
- Department of Systems Design Engineering,
University of Waterloo, Waterloo, Ontario
N2L 3G1, Canada
- School of Optometry and Vision Science,
University of Waterloo, Waterloo, Ontario
N2L 3G1, Canada
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11
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Automatic Determination of the Center of Macular Hole Using Optical Coherence Tomography En Face Images. J Clin Med 2022; 11:jcm11113167. [PMID: 35683554 PMCID: PMC9181087 DOI: 10.3390/jcm11113167] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2022] [Revised: 05/21/2022] [Accepted: 05/30/2022] [Indexed: 01/09/2023] Open
Abstract
To evaluate the automated determination of the center of an idiopathic macular hole (MH) by using swept-source optical coherence tomography (OCT) images with new macro-based algorithms in ImageJ and to compare the difference between the MH center measurements obtained automatically and manually. This cross-sectional study included 39 eyes of 39 elderly individuals (22 women, 17 men) with stage 3 and 4 MH. The MH center was automatically determined using the ImageJ macro. The foveal center was also manually identified by two masked examiners using horizontal and vertical serial B-scan OCT angiography images. The mean age was 68.8 ± 8.3 years. After adjusting for the effect of magnification, the mean distance between the MH center determined manually by Examiner 1 and that determined automatically was 15.5 ± 9.9 µm. The mean distance between the two manually determined measurements of the MH center was 20.3 ± 19.7 µm. These two mean distance values did not differ significantly (Welch t-test, p = 0.27) and was non-inferior (p < 0.0001). The automated ImageJ-based method for determining the MH center was comparable to manual methods. This study showed that automated measurements were non-inferior to manual measurements, and demonstrated a substitutable usefulness, at least for use in clinical practice.
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12
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Cykowska A, Danalache M, Bonnaire FC, Feierabend M, Hofmann UK. Detecting early osteoarthritis through changes in biomechanical properties - A review of recent advances in indentation technologies in a clinical arthroscopic setup. J Biomech 2022; 132:110955. [PMID: 35042088 DOI: 10.1016/j.jbiomech.2022.110955] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2021] [Revised: 12/29/2021] [Accepted: 01/07/2022] [Indexed: 11/19/2022]
Abstract
Osteoarthritis (OA) is a degenerative joint disease currently affecting half of all women and one-third of all men aged over 65 and it is predicted to even increase in the next decades. In the variety of causes leading to OA, the first common denominator are changes in the extracellular matrix of the cartilage. In later stages, OA affects the whole joint spreading to higher levels of tissue architecture causing irreversible functional and structural damage. To date, the diagnosis of OA is only formulated in the late stages of the disease. This is also, where most present therapies apply. Since a precise diagnosis is a prerequisite for targeted therapy, tools to diagnose early OA, monitor its progression, and accurately stage the disease are wanted. This review article focuses on recent advances in indentation technologies to diagnose early OA through describing biomechanical cartilage characteristics. We provide an overview of microindentation instruments, indentation-type Atomic Force Microscopy, ultrasound, and water-jet ultrasound indentation, Optical Coherence Tomography-based air-jet indentation, as well as fiber Bragg grating.
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Affiliation(s)
- Anna Cykowska
- Laboratory of Cell Biology, Department of Orthopaedic Surgery, University Hospital of Tübingen, D-72072 Tübingen, Germany.
| | - Marina Danalache
- Laboratory of Cell Biology, Department of Orthopaedic Surgery, University Hospital of Tübingen, D-72072 Tübingen, Germany.
| | - Florian Christof Bonnaire
- Laboratory of Cell Biology, Department of Orthopaedic Surgery, University Hospital of Tübingen, D-72072 Tübingen, Germany; Department of Orthopaedic Surgery, University Hospital of Tübingen, D-72076 Tübingen, Germany.
| | - Martina Feierabend
- Department of Computational Systems Biology, Faculty of Science of the University of Tübingen, D-72076 Tübingen, Germany.
| | - Ulf Krister Hofmann
- Laboratory of Cell Biology, Department of Orthopaedic Surgery, University Hospital of Tübingen, D-72072 Tübingen, Germany; Department of Orthopaedic, Trauma, and Reconstructive Surgery, RWTH Aachen University Hospital, Pauwelsstraße 30, 52074 Aachen, Germany.
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13
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Spaide RF, Otto T, Caujolle S, Kübler J, Aumann S, Fischer J, Reisman C, Spahr H, Lessmann A. Lateral Resolution of a Commercial Optical Coherence Tomography Instrument. Transl Vis Sci Technol 2022; 11:28. [PMID: 35044444 PMCID: PMC8787587 DOI: 10.1167/tvst.11.1.28] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2021] [Accepted: 12/18/2021] [Indexed: 11/24/2022] Open
Abstract
Purpose The lateral resolution of an optical coherence tomography (OCT) instrument was considered to be equal to the illumination spot size on the retina. To evaluate the potential lateral resolution of the Spectralis OCT, an instrument calculated to have a 14 µm resolution. Methods The lateral point spread function (PSF) was evaluated using diamond abrasive powder 0 to 1 µm in diameter in silicone elastomer and a validated target with 800 nm FeO particles in urethane. The amplitude transfer function was calculated from human OCT images. Finally, resolution was measured using the 1951 USAF target. Results Measurement of the lateral PSF from 1215 diamond particle images yielded a full-width half maximum (FWHM) to be 5.11 µm and for 732 FeO particles, 4.9 µm. From the amplitude transfer function, the FWHM of the diffraction limited PSF was calculated to be 5.0 µm. The USAF target imaging showed a lateral resolution of 4.6 µm. Conclusions Although a calculation of the spot size of the illumination beam was reported in the past as the lateral resolution of the OCT instrument, the actual lateral resolution is better by a factor of at least 2.5 times. The clinically used A-scan spacing was derived from the calculated, and not the true resolution, and results in under sampling. This set of findings likely apply to all commercial clinical instruments. Translational Relevance The scan density parameters of past and present commercial OCT instruments were based on earlier translational concepts, which now appear to have been incorrect.
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Affiliation(s)
- Richard F. Spaide
- Vitreous Retina, Macula Consultants of New York, New York, New York, USA
| | - Tilman Otto
- Heidelberg Engineering GmbH, Heidelberg, Germany
| | | | | | - Silke Aumann
- Heidelberg Engineering GmbH, Heidelberg, Germany
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14
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Visualizing nanometric structures with sub-millimeter waves. Nat Commun 2021; 12:7091. [PMID: 34876583 PMCID: PMC8651651 DOI: 10.1038/s41467-021-27264-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2021] [Accepted: 11/09/2021] [Indexed: 11/08/2022] Open
Abstract
The resolution along the propagation direction of far field imagers can be much smaller than the wavelength by exploiting coherent interference phenomena. We demonstrate a height profile precision as low as 31 nm using wavelengths between 0.375 mm and 0.5 mm (corresponding to 0.6 THz-0.8 THz) by evaluating the Fabry-Pérot oscillations within surface-structured samples. We prove the extreme precision by visualizing structures with a height of only 49 nm, corresponding to 1:7500 to 1:10000 vacuum wavelengths, a height difference usually only accessible to near field measurement techniques at this wavelength range. At the same time, the approach can determine thicknesses in the centimeter range, surpassing the dynamic range of any near field measurement system by orders of magnitude. The measurement technique combined with a Hilbert-transform approach yields the (optical) thickness extracted from the relative phase without any extraordinary wavelength stabilization.
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15
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Wu M, Liu S, Leartprapun N, Adie S. Investigation of multiple scattering in space and spatial-frequency domains: with application to the analysis of aberration-diverse optical coherence tomography. BIOMEDICAL OPTICS EXPRESS 2021; 12:7478-7499. [PMID: 35003847 PMCID: PMC8713691 DOI: 10.1364/boe.439395] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/04/2021] [Revised: 10/25/2021] [Accepted: 10/26/2021] [Indexed: 05/12/2023]
Abstract
Optical microscopy suffers from multiple scattering (MS), which limits the optical imaging depth into scattering media. We previously demonstrated aberration-diverse optical coherence tomography (AD-OCT) for MS suppression, based on the principle that for datasets acquired with different aberration states of the imaging beam, MS backgrounds become decorrelated while single scattering (SS) signals remain correlated, so that a simple coherent average can be used to enhance the SS signal over the MS background. Here, we propose a space/spatial-frequency domain analysis framework for the investigation of MS in OCT, and apply the framework to compare AD-OCT (using astigmatic beams) to standard Gaussian-beam OCT via experiments in scattering tissue phantoms. Utilizing this framework, we found that increasing the astigmatic magnitude produced a large drop in both MS background and SS signal, but the decay experienced by the MS background was larger than the SS signal. Accounting for the decay in both SS signal and MS background, the overall signal-to-background ratio (SBR) of AD-OCT was similar to the Gaussian control after about 10 coherent averages, when deeper line foci was positioned at the plane-of-interest and the line foci spacing was smaller than or equal to 80 µm. For an even larger line foci spacing of 160 µm, AD-OCT resulted in a lower SBR than the Gaussian-beam control. This work provides an analysis framework to gain deeper levels of understanding and insights for the future study of MS and MS suppression in both the space and spatial-frequency domains.
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Affiliation(s)
- Meiqi Wu
- Meinig School of Biomedical Engineering, Cornell University, Ithaca, NY 14853, USA
| | - Siyang Liu
- School of Electrical and Computer Engineering, Cornell University, Ithaca, NY 14853, USA
| | - Nichaluk Leartprapun
- Meinig School of Biomedical Engineering, Cornell University, Ithaca, NY 14853, USA
| | - Steven Adie
- Meinig School of Biomedical Engineering, Cornell University, Ithaca, NY 14853, USA
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16
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Lee KH, Kim TH. Recent Advances in Multicellular Tumor Spheroid Generation for Drug Screening. BIOSENSORS 2021; 11:445. [PMID: 34821661 PMCID: PMC8615712 DOI: 10.3390/bios11110445] [Citation(s) in RCA: 43] [Impact Index Per Article: 14.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2021] [Revised: 11/08/2021] [Accepted: 11/10/2021] [Indexed: 05/12/2023]
Abstract
Multicellular tumor spheroids (MCTs) have been employed in biomedical fields owing to their advantage in designing a three-dimensional (3D) solid tumor model. For controlling multicellular cancer spheroids, mimicking the tumor extracellular matrix (ECM) microenvironment is important to understand cell-cell and cell-matrix interactions. In drug cytotoxicity assessments, MCTs provide better mimicry of conventional solid tumors that can precisely represent anticancer drug candidates' effects. To generate incubate multicellular spheroids, researchers have developed several 3D multicellular spheroid culture technologies to establish a research background and a platform using tumor modelingvia advanced materials science, and biosensing techniques for drug-screening. In application, drug screening was performed in both invasive and non-invasive manners, according to their impact on the spheroids. Here, we review the trend of 3D spheroid culture technology and culture platforms, and their combination with various biosensing techniques for drug screening in the biomedical field.
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Affiliation(s)
| | - Tae-Hyung Kim
- School of Integrative Engineering, Chung-Ang University, 84 Heukseuk-ro, Dongjak-gu, Seoul 06974, Korea;
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17
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Ji X, Mojahed D, Okawachi Y, Gaeta AL, Hendon CP, Lipson M. Millimeter-scale chip-based supercontinuum generation for optical coherence tomography. SCIENCE ADVANCES 2021; 7:eabg8869. [PMID: 34533990 PMCID: PMC8448444 DOI: 10.1126/sciadv.abg8869] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
Supercontinuum sources for optical coherence tomography (OCT) have raised great interest as they provide broad bandwidth to enable high resolution and high power to improve imaging sensitivity. Commercial fiber-based supercontinuum systems require high pump powers to generate broad bandwidth and customized optical filters to shape/attenuate the spectra. They also have limited sensitivity and depth performance. We introduce a supercontinuum platform based on a 1-mm2 Si3N4 photonic chip for OCT. We directly pump and efficiently generate supercontinuum near 1300 nm without any postfiltering. With a 25-pJ pump pulse, we generate a broadband spectrum with a flat 3-dB bandwidth of 105 nm. Integrating the chip into a spectral domain OCT system, we achieve 105-dB sensitivity and 1.81-mm 6-dB sensitivity roll-off with 300-μW optical power on sample. We image breast tissue to demonstrate strong imaging performance. Our chip will pave the way toward portable OCT and incorporating integrated photonics into optical imaging technologies.
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Affiliation(s)
- Xingchen Ji
- Department of Electrical Engineering, Columbia University, New York, NY 10027, USA
| | - Diana Mojahed
- Department of Electrical Engineering, Columbia University, New York, NY 10027, USA
- Department of Biomedical Engineering, Columbia University, New York, NY 10027, USA
| | - Yoshitomo Okawachi
- Department of Applied Physics and Applied Mathematics, Columbia University, New York, NY 10027, USA
| | - Alexander L. Gaeta
- Department of Applied Physics and Applied Mathematics, Columbia University, New York, NY 10027, USA
| | - Christine P. Hendon
- Department of Electrical Engineering, Columbia University, New York, NY 10027, USA
- Corresponding author. (M.L.); (C.P.H.)
| | - Michal Lipson
- Department of Electrical Engineering, Columbia University, New York, NY 10027, USA
- Corresponding author. (M.L.); (C.P.H.)
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18
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Auksorius E. Fourier-domain full-field optical coherence tomography with real-time axial imaging. OPTICS LETTERS 2021; 46:4478-4481. [PMID: 34525026 DOI: 10.1364/ol.435104] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/23/2021] [Accepted: 08/11/2021] [Indexed: 06/13/2023]
Abstract
Fourier-domain full-field optical coherence tomography (FD-FF-OCT) is a fast interferometric imaging technique capable of volumetric sample imaging. However, half of the backscattered light from a sample is lost as it passes through a 50/50 beam splitter, which is at the heart of almost every interferometer. Here, it is demonstrated that this light could be extracted by spatially splitting the illumination pupil plane and detecting it with a separate camera. When a line camera is used to detect the recovered signal, it enables real-time axial imaging of the human cornea in vivo, which serves as a useful visual feedback for aligning a patient for imaging.
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19
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Yan F, Gunay G, Valerio TI, Wang C, Wilson JA, Haddad MS, Watson M, Connell MO, Davidson N, Fung KM, Acar H, Tang Q. Characterization and quantification of necrotic tissues and morphology in multicellular ovarian cancer tumor spheroids using optical coherence tomography. BIOMEDICAL OPTICS EXPRESS 2021; 12:3352-3371. [PMID: 34221665 PMCID: PMC8221959 DOI: 10.1364/boe.425512] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/18/2021] [Revised: 05/03/2021] [Accepted: 05/07/2021] [Indexed: 05/02/2023]
Abstract
The three-dimensional (3D) tumor spheroid model is a critical tool for high-throughput ovarian cancer research and anticancer drug development in vitro. However, the 3D structure prevents high-resolution imaging of the inner side of the spheroids. We aim to visualize and characterize 3D morphological and physiological information of the contact multicellular ovarian tumor spheroids growing over time. We intend to further evaluate the distinctive evolutions of the tumor spheroid and necrotic tissue volumes in different cell numbers and determine the most appropriate mathematical model for fitting the growth of tumor spheroids and necrotic tissues. A label-free and noninvasive swept-source optical coherence tomography (SS-OCT) imaging platform was applied to obtain two-dimensional (2D) and 3D morphologies of ovarian tumor spheroids over 18 days. Ovarian tumor spheroids of two different initial cell numbers (5,000- and 50,000- cells) were cultured and imaged (each day) over the time of growth in 18 days. Four mathematical models (Exponential-Linear, Gompertz, logistic, and Boltzmann) were employed to describe the growth kinetics of the tumor spheroids volume and necrotic tissues. Ovarian tumor spheroids have different growth curves with different initial cell numbers and their growths contain different stages with various growth rates over 18 days. The volumes of 50,000-cells spheroids and the corresponding necrotic tissues are larger than that of the 5,000-cells spheroids. The formation of necrotic tissue in 5,000-cells numbers is slower than that in the 50,000-cells ones. Moreover, the Boltzmann model exhibits the best fitting performance for the growth of tumor spheroids and necrotic tissues. Optical coherence tomography (OCT) can serve as a promising imaging modality to visualize and characterize morphological and physiological features of multicellular ovarian tumor spheroids. The Boltzmann model integrating with 3D OCT data of ovarian tumor spheroids provides great potential for high-throughput cancer research in vitro and aiding in drug development.
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Affiliation(s)
- Feng Yan
- Stephenson School of Biomedical Engineering, University of Oklahoma, OK 73019, USA
- Equal contribution
| | - Gokhan Gunay
- Stephenson School of Biomedical Engineering, University of Oklahoma, OK 73019, USA
- Equal contribution
| | - Trisha I Valerio
- Stephenson School of Biomedical Engineering, University of Oklahoma, OK 73019, USA
- Equal contribution
| | - Chen Wang
- Stephenson School of Biomedical Engineering, University of Oklahoma, OK 73019, USA
| | - Jayla A Wilson
- Stephenson School of Biomedical Engineering, University of Oklahoma, OK 73019, USA
| | - Majood S Haddad
- Stephenson School of Biomedical Engineering, University of Oklahoma, OK 73019, USA
| | - Maegan Watson
- Stephenson School of Biomedical Engineering, University of Oklahoma, OK 73019, USA
| | - Michael O Connell
- Stephenson School of Biomedical Engineering, University of Oklahoma, OK 73019, USA
| | - Noah Davidson
- Stephenson School of Biomedical Engineering, University of Oklahoma, OK 73019, USA
| | - Kar-Ming Fung
- Department of Pathology, The University of Oklahoma Health Sciences Center, Oklahoma City 73104, USA
- Stephenson Cancer Center, The University of Oklahoma Health Sciences Center, Oklahoma City 73104, USA
| | - Handan Acar
- Stephenson School of Biomedical Engineering, University of Oklahoma, OK 73019, USA
- Stephenson Cancer Center, The University of Oklahoma Health Sciences Center, Oklahoma City 73104, USA
| | - Qinggong Tang
- Stephenson School of Biomedical Engineering, University of Oklahoma, OK 73019, USA
- Stephenson Cancer Center, The University of Oklahoma Health Sciences Center, Oklahoma City 73104, USA
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20
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Hassan MA, Al-Nedawe BM, Fakhri MA. Embedded optical fiber link interferometer sensors for snapshot surface inspection using the synthetic wavelength technique. APPLIED OPTICS 2021; 60:2339-2347. [PMID: 33690333 DOI: 10.1364/ao.417370] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/11/2020] [Accepted: 02/19/2021] [Indexed: 06/12/2023]
Abstract
Free-space optical measurement systems can have a direct impact on evaluation systems operational in propagation paths. During propagation via optical fibers, light suffers scattering or interference, causing some output signal loss with an uncertainty outcome. Therefore, this study aims to explore the instant decisions related to the use of single- and multi-mode fiber optics and how they affect the gathering of data from high-speed optical measurement instrument links. The study also seeks to address a number of design methodology aspects and the empirical outcomes related to a surface topography measurement sensor based on fiber optics capable of surface roughness or step-height measurement. The study suggests that the Fourier transform profilometry method (FTP) can overcome the disadvantages of optical metrology sensors (e.g., bulkiness, challenging set-up, high costs, and low speed). However, despite eliminating vertical height problems, the Fourier transform profilometry (FTP) did have some shortcomings for every outcome related to core variables, including the dispersive optical fiber link sensor. The synthetic wavelength method enabled the dispersive optical fiber link sensor to calculate the vertical step height of the selected sample (1 µm). There was improved step-height repeatability, with satisfactory from 20 to 18 nm outcome improvement range. Additional investigations are necessary to establish the compatibility of single- or multi-mode optical fiber sensors with particular instruments, especially those currently preferred for embedded metrology applications.
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21
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Soliton microcomb based spectral domain optical coherence tomography. Nat Commun 2021; 12:427. [PMID: 33462200 PMCID: PMC7813855 DOI: 10.1038/s41467-020-20404-9] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2020] [Accepted: 11/05/2020] [Indexed: 12/22/2022] Open
Abstract
Spectral domain optical coherence tomography (OCT) is a widely employed, minimally invasive bio-medical imaging technique, which requires a broadband light source, typically implemented by super-luminescent diodes. Recent advances in soliton based photonic integrated frequency combs (soliton microcombs) have enabled the development of low-noise, broadband chipscale frequency comb sources, whose potential for OCT imaging has not yet been unexplored. Here, we explore the use of dissipative Kerr soliton microcombs in spectral domain OCT and show that, by using photonic chipscale Si3N4 resonators in conjunction with 1300 nm pump lasers, spectral bandwidths exceeding those of commercial OCT sources are possible. We characterized the exceptional noise properties of our source (in comparison to conventional OCT sources) and demonstrate that the soliton states in microresonators exhibit a residual intensity noise floor at high offset frequencies that is ca. 3 dB lower than a traditional OCT source at identical power, and can exhibit significantly lower noise performance for powers at the milli-Watt level. Moreover, we demonstrate that classical amplitude noise of all soliton comb teeth are correlated, i.e., common mode, in contrast to superluminescent diodes or incoherent microcomb states, which opens a new avenue to improve imaging speed and performance beyond the thermal noise limit. Superluminescent diodes, that provide a broadband spectrum are typically used in spectral domain coherence tomography. Here, the authors use chipscale silicon nitride resonators to generate soliton microcombs with a lower noise flor that could substitute the diode sources.
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22
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Imaging Motion: A Comprehensive Review of Optical Coherence Tomography Angiography. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2021; 1310:343-365. [PMID: 33834441 DOI: 10.1007/978-981-33-6064-8_12] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
Optical coherence tomography (OCT) is a three-dimensional (3-D) optical imaging technology that provides noninvasive, micrometer resolution images of structural interiors within biological samples with an approximately 1 ~ 2 mm penetration depth. Over the last decades, advances in OCT have revolutionized biomedical imaging by demonstrating a potential of optical biopsy in preclinical and clinical settings. Recently, functional OCT imaging has shown a promise as angiography to visualize cell-perfused vasculatures in the tissue bed in vivo without requiring any exogenous contrast agents. This new technology termed OCT angiography (OCTA) possesses a unique imaging capability of delineating tissue morphology and blood or lymphatic vessels down to capillaries at real-time acquisition rates. For the past 10 years since 2007, OCTA has been proven to be a useful tool to identify disorder or dysfunction in tissue microcirculation from both experimental animal studies and clinical studies in ophthalmology and dermatology. In this section, we overview about OCTA including a basic principle of OCTA explained with simple optical physics, and its scan protocols and post-processing algorithms for acquisition of angiography. Then, potential and challenge of OCTA for clinical settings are shown with outcomes of human studies.
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23
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McLean JP, Fang S, Gallos G, Myers KM, Hendon CP. Three-dimensional collagen fiber mapping and tractography of human uterine tissue using OCT. BIOMEDICAL OPTICS EXPRESS 2020; 11:5518-5541. [PMID: 33149968 PMCID: PMC7587264 DOI: 10.1364/boe.397041] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/27/2020] [Revised: 07/23/2020] [Accepted: 07/30/2020] [Indexed: 05/10/2023]
Abstract
Automatic quantification and visualization of 3-D collagen fiber architecture using Optical Coherence Tomography (OCT) has previously relied on polarization information and/or prior knowledge of tissue-specific fiber architecture. This study explores image processing, enhancement, segmentation, and detection algorithms to map 3-D collagen fiber architecture from OCT images alone. 3-D fiber mapping, histogram analysis, and 3-D tractography revealed fiber groupings and macro-organization previously unseen in uterine tissue samples. We applied our method on centimeter-scale mosaic OCT volumes of uterine tissue blocks from pregnant and non-pregnant specimens revealing a complex, patient-specific network of fibrous collagen and myocyte bundles.
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Affiliation(s)
- James P. McLean
- Department of Electrical Engineering, Columbia University, New York, NY 10027, USA
| | - Shuyang Fang
- Department of Mechanical Engineering, Columbia University, New York, NY 10027, USA
| | - George Gallos
- Department of Anesthesiology, Columbia University Irving Medical Center, New York, NY 10032, USA
| | - Kristin M. Myers
- Department of Mechanical Engineering, Columbia University, New York, NY 10027, USA
| | - Christine P. Hendon
- Department of Electrical Engineering, Columbia University, New York, NY 10027, USA
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24
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Xu M, Tang C, Hao F, Chen M, Lei Z. Texture preservation and speckle reduction in poor optical coherence tomography using the convolutional neural network. Med Image Anal 2020; 64:101727. [DOI: 10.1016/j.media.2020.101727] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2019] [Revised: 05/10/2020] [Accepted: 05/11/2020] [Indexed: 11/25/2022]
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25
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Kang YG, Jang H, Park Y, Kim BM. Development of a 3-D Physical Dynamics Monitoring System Using OCM with DVC for Quantification of Sprouting Endothelial Cells Interacting with a Collagen Matrix. MATERIALS 2020; 13:ma13122693. [PMID: 32545667 PMCID: PMC7345655 DOI: 10.3390/ma13122693] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/15/2020] [Revised: 06/05/2020] [Accepted: 06/10/2020] [Indexed: 11/16/2022]
Abstract
The extracellular matrix (ECM) plays a key role during cell migration, proliferation, and differentiation by providing adhesion sites and serving as a physical scaffold. Elucidating the interaction between the cell and ECM can reveal the underlying mechanisms of cellular behavior that are currently unclear. Analysis of the deformation of the ECM due to cell-matrix interactions requires microscopic, three-dimensional (3-D) imaging methods, such as confocal microscopy and second-harmonic generation microscopy, which are currently limited by phototoxicity and bleaching as a result of the point-scanning approach. In this study, we suggest the use of optical coherence microscopy (OCM) as a live-cell, volumetric, fast imaging tool for analyzing the deformation of fibrous ECM. We optimized such OCM parameters as the sampling rate to obtain images of the best quality that meet the requirements for robust digital volume correlation (DVC) analysis. Visualization and analysis of the mechanical interaction between collagen ECM and human umbilical vein endothelial cells (HUVECs) show that cellular adhesion during protrusion can be analyzed and quantified. The advantages of OCM, such as fine isotropic spatial resolution, fast time resolution, and low phototoxicity, make it the ideal optic tool for 3-D traction force microscopy.
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Affiliation(s)
- Yong Guk Kang
- Department of Bio-Convergence Engineering, College of Health Science, Korea University, Seoul 02841, Korea;
| | - Hwanseok Jang
- Department of Biomedical Sciences, College of Medicine, Korea University, Seoul 02841, Korea;
| | - Yongdoo Park
- Department of Biomedical Sciences, College of Medicine, Korea University, Seoul 02841, Korea;
- Correspondence: (Y.P.); (B.-M.K.); +82-2-2286-1460 (Y.P.); +82-2-940-2771 (B.-M.K.)
| | - Beop-Min Kim
- Department of Bio-Convergence Engineering, College of Health Science, Korea University, Seoul 02841, Korea;
- Correspondence: (Y.P.); (B.-M.K.); +82-2-2286-1460 (Y.P.); +82-2-940-2771 (B.-M.K.)
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26
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Auksorius E, Borycki D, Stremplewski P, Liżewski K, Tomczewski S, Niedźwiedziuk P, Sikorski BL, Wojtkowski M. In vivo imaging of the human cornea with high-speed and high-resolution Fourier-domain full-field optical coherence tomography. BIOMEDICAL OPTICS EXPRESS 2020; 11:2849-2865. [PMID: 32499965 PMCID: PMC7249809 DOI: 10.1364/boe.393801] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/27/2020] [Revised: 04/22/2020] [Accepted: 04/23/2020] [Indexed: 05/06/2023]
Abstract
Corneal evaluation in ophthalmology necessitates cellular-resolution and fast imaging techniques that allow for accurate diagnoses. Currently, the fastest volumetric imaging technique is Fourier-domain full-field optical coherence tomography (FD-FF-OCT), which uses a fast camera and a rapidly tunable laser source. Here, we demonstrate high-resolution, high-speed, non-contact corneal volumetric imaging in vivo with FD-FF-OCT that can acquire a single 3D volume with a voxel rate of 7.8 GHz. The spatial coherence of the laser source was suppressed to prevent it from focusing on a spot on the retina, and therefore, exceeding the maximum permissible exposure (MPE). The inherently volumetric nature of FD-FF-OCT data enabled flattening of curved corneal layers. The acquired FD-FF-OCT images revealed corneal cellular structures, such as epithelium, stroma and endothelium, as well as subbasal and mid-stromal nerves.
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Affiliation(s)
- Egidijus Auksorius
- Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland
- Equal contribution
| | - Dawid Borycki
- Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland
- Equal contribution
| | - Patrycjusz Stremplewski
- Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland
| | - Kamil Liżewski
- Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland
| | - Slawomir Tomczewski
- Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland
| | - Paulina Niedźwiedziuk
- Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland
| | - Bartosz L. Sikorski
- Department of Ophthalmology, Nicolaus Copernicus University, 9 M. Sklodowskiej-Curie St., Bydgoszcz 85-309, Poland
- Oculomedica Eye Research & Development Center, 9 Broniewskiego St, 85-391 Bydgoszcz, Poland
| | - Maciej Wojtkowski
- Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland
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27
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Hu Y, Tang C, Xu M, Lei Z. Selective retinex enhancement based on the clustering algorithm and block-matching 3D for optical coherence tomography images. APPLIED OPTICS 2019; 58:9861-9869. [PMID: 31873631 DOI: 10.1364/ao.58.009861] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/19/2019] [Accepted: 11/07/2019] [Indexed: 06/10/2023]
Abstract
It is important to enhance the contrast and remove the speckle noise for optical coherence tomography (OCT) images. In this paper, we propose a selective retinex enhancement method based on the fuzzy c-means (FCM) clustering algorithm to enhance only the structure part in OCT images and combines with the block-matching 3D (BM3D) algorithm for filtering. In the proposed selective retinex enhancement method, we first calculate the feature image of the original image, which includes the mean value and standard deviation of each pixel in the original image and its correlation image. Second, by applying the FCM clustering algorithm to the feature image, a mask is generated that can distinguish the structure part from the background part in the OCT image. Then, the mask is applied to the multi-scale retinex algorithm, and only the structure part in the OCT image is enhanced. Moreover, the BM3D method is applied to filter the enhanced image. Experimental results demonstrate that the proposed method performs impressively in improving the contrast and removing the speckle noise of OCT images, and it provides better quantitative performance in terms of signal-to-noise ratio, contrast-to-noise ratio, equivalent number of looks, and the edge preservation parameter $ \beta $β.
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28
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Auksorius E, Borycki D, Wojtkowski M. Crosstalk-free volumetric in vivo imaging of a human retina with Fourier-domain full-field optical coherence tomography. BIOMEDICAL OPTICS EXPRESS 2019; 10:6390-6407. [PMID: 31853406 PMCID: PMC6913414 DOI: 10.1364/boe.10.006390] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/17/2019] [Revised: 11/09/2019] [Accepted: 11/12/2019] [Indexed: 05/05/2023]
Abstract
Fourier-domain full-field optical coherence tomography (FD-FF-OCT) is currently the fastest volumetric imaging technique that is able to generate a single 3-D volume of retina in less than 9 ms, corresponding to a voxel rate of 7.8 GHz. FD-FF-OCT is based on a fast camera, a rapidly tunable laser source, and Fourier-domain signal detection. However, crosstalk appearing due to multiply scattered light corrupts images with the speckle pattern, and therefore, lowers image quality. Here, for the first time, we report on a system that can acquire essentially crosstalk-free volumes of the retina by using a fast deformable membrane. It enables the visualization of choroids and a clear delineation of the retinal layers that is not possible with conventional FD-FF-OCT.
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Optical coherence tomography angiography in preclinical neuroimaging. Biomed Eng Lett 2019; 9:311-325. [PMID: 31456891 DOI: 10.1007/s13534-019-00118-8] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2019] [Revised: 04/29/2019] [Accepted: 06/27/2019] [Indexed: 01/22/2023] Open
Abstract
Preclinical neuroimaging allows for the assessment of brain anatomy, connectivity, and function in laboratory animals, such as mice and this imaging field has been a rapidly growing aimed at bridging the translation gap between animal and human research. The progress in the animal research could be accelerated by high-resolution in vivo optical imaging technologies. Optical coherence tomography-based angiography (OCTA) estimates the scattering from moving red blood cells, providing the visualization of functional micro-vessel networks within tissue beds in vivo without a need for exogenous contrast agents. Recent advancement of OCTA methods have expanded its application to neuroimaging of small animal models of brain disorders. In this paper, we overview the recent development of OCTA techniques for blood flow imaging and its preclinical applications in neuroimaging. In specific, a summary of preclinical OCTA studies for traumatic brain injury, cerebral stroke, and aging brain on mice is reviewed.
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Zhang Z, Ikpatt U, Lawman S, Williams B, Zheng Y, Lin H, Shen Y. Sub-surface imaging of soiled cotton fabric using full-field optical coherence tomography. OPTICS EXPRESS 2019; 27:13951-13964. [PMID: 31163852 DOI: 10.1364/oe.27.013951] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/18/2019] [Accepted: 03/15/2019] [Indexed: 05/23/2023]
Abstract
In the laundry industry, colorimetry is a common way to evaluate the stain removal efficiency of detergents and cleaning products. For ease of visualization, the soiling agent is treated with a dye before measurement. However, it effectively measures the dye removal rather than stain removal, and it cannot provide depth-resolved information of the sample. In this study, we show that full-field (FF) optical coherence tomography (OCT) technique is capable of measuring the cleaning effect on cotton fabric by imaging the sub-surface features of fabric samples. We used a broadband light-emitting diode (LED) source to power the FF-OCT system that achieves the resolution of 1 µm axially and 1.6 µm laterally. This allows the micron-sized cotton fibres/fibrils at different depth positions to be resolved. The clean, the soiled, and the washed samples can be differentiated from their cross-sectional images using OCT, where the cleaning effect can be correlated with the sub-surface fibre volume. The experimental results of the proposed method were found to be in good agreement with those of the standard colorimetry method. The proposed technique therefore offers an alternative way for measuring the stain removal from fabric substrate to assess the effectiveness of laundry detergent products.
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Liang D, Taeschler D, Goepfert C, Arnold P, Zurbuchen A, Sweda R, Reichlin T, Tanner H, Roten L, Haeberlin A. Radiofrequency ablation lesion assessment using optical coherence tomography - a proof-of-concept study. J Cardiovasc Electrophysiol 2019; 30:934-940. [PMID: 30883977 DOI: 10.1111/jce.13917] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 01/21/2019] [Revised: 03/06/2019] [Accepted: 03/10/2019] [Indexed: 11/30/2022]
Abstract
BACKGROUND Radiofrequency catheter ablation (RFA) is an effective treatment for atrial fibrillation. However, ablation lesions are usually only assessed functionally. The immediate effect of RFA on the tissue is not directly visualized. Optical coherence tomography (OCT) is an imaging technique that uses light to capture high-resolution images with histology-like quality. Therefore, it might be used for high-precision imaging of ablation lesions. METHODS AND RESULTS Radiofrequency ablation lesions (n = 25) were produced on the freshly excised left and right ventricular porcine endocardium. A Thermocool ST SF NAV ablation catheter (Biosense Webster Inc) and an EP-Shuttle ablation generator (Stockert GmbH) were used to produce ablation lesions with powers from 10 to 40 W (energies ranging from 100 Ws to 900 Ws). After ablation, the tissue was imaged with a swept source OCT system (at a wavelength of 1300 nm). Subsequently, the ablation lesions underwent the histological analysis. The ablation lesions could be visualized by OCT in all 17 samples with ablation powers ≥20 W, meanwhile, no lesion could be observed in the other eight samples with lower power (10 W). Lesion depths and lesion radiuses, as assessed by OCT, correlated well with those observed on the subsequent histological analysis (Spearman's r = 0.94, P < 0.001 and r = 0.84, P < 0.001). In addition, successful three-dimensional reconstructions of ablation lesions were performed. CONCLUSION OCT can provide a visual high-resolution assessment of ablation lesions.
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Affiliation(s)
- Deming Liang
- Department of Cardiology, Inselspital, Bern University Hospital, University of Bern, Bern, Switzerland.,ARTORG Center for Biomedical Engineering Research, University of Bern, Bern, Switzerland
| | - Dominik Taeschler
- HuCE - optoLab, Bern University of Applied Sciences, Biel, Switzerland
| | - Christine Goepfert
- COMPATH, Institute of Animal Pathology, Vetsuisse Faculty, University of Bern, Bern, Switzerland
| | - Patrik Arnold
- HuCE - optoLab, Bern University of Applied Sciences, Biel, Switzerland
| | - Adrian Zurbuchen
- SITEM - Swiss Institute for Translational and Entrepreneurial Medicine, Bern, Switzerland
| | - Romy Sweda
- Department of Cardiology, Inselspital, Bern University Hospital, University of Bern, Bern, Switzerland
| | - Tobias Reichlin
- Department of Cardiology, Inselspital, Bern University Hospital, University of Bern, Bern, Switzerland
| | - Hildegard Tanner
- Department of Cardiology, Inselspital, Bern University Hospital, University of Bern, Bern, Switzerland
| | - Laurent Roten
- Department of Cardiology, Inselspital, Bern University Hospital, University of Bern, Bern, Switzerland
| | - Andreas Haeberlin
- Department of Cardiology, Inselspital, Bern University Hospital, University of Bern, Bern, Switzerland.,ARTORG Center for Biomedical Engineering Research, University of Bern, Bern, Switzerland.,SITEM - Swiss Institute for Translational and Entrepreneurial Medicine, Bern, Switzerland.,Department of Cardiology, Electrophysiology and Ablation Unit, Bordeaux University Hospital (CHU), Pessac, France
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Wang W, Wang G, Ma J, Cheng L, Guan BO. Miniature all-fiber axicon probe with extended Bessel focus for optical coherence tomography. OPTICS EXPRESS 2019; 27:358-366. [PMID: 30696123 DOI: 10.1364/oe.27.000358] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/02/2018] [Accepted: 12/03/2018] [Indexed: 06/09/2023]
Abstract
The trade-off between lateral resolution and depth of focus (DOF) severely limits the capability of endoscopic optical coherence tomography (OCT) for high-resolution deep-tissue imaging. To address this issue, we developed a novel miniature all-fiber axicon OCT probe by inserting a segment of gradient-index (GRIN) fiber between a piece of single-mode fiber (SMF) and an axicon polished from a no-core fiber. The GRIN lens served as a beam expander extending the probe DOF by 5.2 times while maintaining a high lateral resolution of 2 μm. The DOF extension was experimentally verified by measuring the axial profile of the probe output beam and further by imaging multilayered polymer tapes and onion samples. The designed probe with a tight focus over a large DOF holds great potential in endoscopic OCT imaging of deep tissues at the cellular level.
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Visualization of the pulp chamber roof and residual dentin thickness by spectral-domain optical coherence tomography in vitro. Lasers Med Sci 2018; 34:973-980. [DOI: 10.1007/s10103-018-2686-3] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2018] [Accepted: 11/07/2018] [Indexed: 02/07/2023]
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New clinical ultrahigh-resolution SD-OCT using A-scan matching algorithm. Graefes Arch Clin Exp Ophthalmol 2018; 257:255-263. [PMID: 30406274 DOI: 10.1007/s00417-018-4183-6] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2018] [Revised: 10/24/2018] [Accepted: 10/28/2018] [Indexed: 10/27/2022] Open
Abstract
PURPOSE A new clinical ultrahigh-resolution spectral domain optical coherence tomography (UHR-SD-OCT) system using an original averaging technique named "A-scan matching algorithm" was developed. The aim of this study was to determine whether our new UHR-SD-OCT system can obtain clearer sectional images of the retina than conventional standard resolution SD-OCT systems (SR-SD-OCT). METHODS We recorded horizontal B-scan images of 42 normal eyes using our new UHR-SD-OCT device (Bi-μ, Kowa) and a conventional SR-SD-OCT (Spectralis, Heidelberg). To evaluate the clarity of the interdigitation zone (IZ) subjectively, the integrity of IZ was divided into three types by two raters. To evaluate the clarity of the IZ objectively, a peak height score (PHS) was calculated at five different points of the macula using the longitudinal reflectivity profile. RESULTS The mean (± SD) of the subjective visibility score of the IZ in the UHR-SD-OCT images was 2.64 ± 0.54 which was significantly higher than the 2.46 ± 0.46 in the SR-SD-OCT images (P = 0.02). The PHS was also significantly higher for the UHR-SD-OCT than for the SR-SD-OCT images at all five locations (all P < 0.01). CONCLUSION The results indicate that the newly developed clinical UHR-SD-OCT instrument using the A-scan matching algorithm can obtain clearer images of the IZ, and they suggest that this device should be clinically useful in detecting finer structural abnormalities of the outer retina.
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Liu S, Lamont MRE, Mulligan JA, Adie SG. Aberration-diverse optical coherence tomography for suppression of multiple scattering and speckle. BIOMEDICAL OPTICS EXPRESS 2018; 9:4919-4935. [PMID: 30319912 PMCID: PMC6179412 DOI: 10.1364/boe.9.004919] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/01/2018] [Revised: 09/06/2018] [Accepted: 09/07/2018] [Indexed: 05/05/2023]
Abstract
Multiple scattering is a major barrier that limits the optical imaging depth in scattering media. In order to alleviate this effect, we demonstrate aberration-diverse optical coherence tomography (AD-OCT), which exploits the phase correlation between the deterministic signals from single-scattered photons to suppress the random background caused by multiple scattering and speckle. AD-OCT illuminates the sample volume with diverse aberrated point spread functions, and computationally removes these intentionally applied aberrations. After accumulating 12 astigmatism-diverse OCT volumes, we show a 10 dB enhancement in signal-to-background ratio via a coherent average of reconstructed signals from a USAF target located 7.2 scattering mean free paths below a thick scattering layer, and a 3× speckle contrast reduction from an incoherent average of reconstructed signals inside the scattering layer. This AD-OCT method, when implemented using astigmatic illumination, is a promising approach for ultra-deep volumetric optical coherence microscopy.
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Affiliation(s)
- Siyang Liu
- School of Electrical and Computer Engineering, Cornell University, Ithaca, NY 14853, USA
| | - Michael R. E. Lamont
- Nancy E. and Peter C. Meinig School of Biomedical Engineering, Cornell University, Ithaca, NY 14853, USA
| | - Jeffrey A. Mulligan
- School of Electrical and Computer Engineering, Cornell University, Ithaca, NY 14853, USA
| | - Steven G. Adie
- Nancy E. and Peter C. Meinig School of Biomedical Engineering, Cornell University, Ithaca, NY 14853, USA
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Hou CC, Chen HM, Zhang JC, Zhuo N, Huang YQ, Hogg RA, Childs DTD, Ning JQ, Wang ZG, Liu FQ, Zhang ZY. Near-infrared and mid-infrared semiconductor broadband light emitters. LIGHT, SCIENCE & APPLICATIONS 2018; 7:17170. [PMID: 30839527 PMCID: PMC6060043 DOI: 10.1038/lsa.2017.170] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/23/2017] [Revised: 11/29/2017] [Accepted: 12/02/2017] [Indexed: 05/03/2023]
Abstract
Semiconductor broadband light emitters have emerged as ideal and vital light sources for a range of biomedical sensing/imaging applications, especially for optical coherence tomography systems. Although near-infrared broadband light emitters have found increasingly wide utilization in these imaging applications, the requirement to simultaneously achieve both a high spectral bandwidth and output power is still challenging for such devices. Owing to the relatively weak amplified spontaneous emission, as a consequence of the very short non-radiative carrier lifetime of the inter-subband transitions in quantum cascade structures, it is even more challenging to obtain desirable mid-infrared broadband light emitters. There have been great efforts in the past 20 years to pursue high-efficiency broadband optical gain and very low reflectivity in waveguide structures, which are two key factors determining the performance of broadband light emitters. Here we describe the realization of a high continuous wave light power of >20 mW and broadband width of >130 nm with near-infrared broadband light emitters and the first mid-infrared broadband light emitters operating under continuous wave mode at room temperature by employing a modulation p-doped InGaAs/GaAs quantum dot active region with a 'J'-shape ridge waveguide structure and a quantum cascade active region with a dual-end analogous monolithic integrated tapered waveguide structure, respectively. This work is of great importance to improve the performance of existing near-infrared optical coherence tomography systems and describes a major advance toward reliable and cost-effective mid-infrared imaging and sensing systems, which do not presently exist due to the lack of appropriate low-coherence mid-infrared semiconductor broadband light sources.
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Affiliation(s)
- Chun-Cai Hou
- Key Lab of Nanodevices and Applications, Suzhou Institute of Nano-Tech and Nano-Bionics, Chinese Academy of Sciences, Suzhou 215123, China
- Key Laboratory of Semiconductor Materials Science, Institute of Semiconductors, Chinese Academy of Sciences, Beijing 100083, China
- College of Materials Science and Opto-Electronic Technology, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Hong-Mei Chen
- Key Lab of Nanodevices and Applications, Suzhou Institute of Nano-Tech and Nano-Bionics, Chinese Academy of Sciences, Suzhou 215123, China
| | - Jin-Chuan Zhang
- Key Laboratory of Semiconductor Materials Science, Institute of Semiconductors, Chinese Academy of Sciences, Beijing 100083, China
| | - Ning Zhuo
- Key Laboratory of Semiconductor Materials Science, Institute of Semiconductors, Chinese Academy of Sciences, Beijing 100083, China
| | - Yuan-Qing Huang
- Key Lab of Nanodevices and Applications, Suzhou Institute of Nano-Tech and Nano-Bionics, Chinese Academy of Sciences, Suzhou 215123, China
| | - Richard A Hogg
- School of Engineering, The University of Glasgow, Glasgow G12 8LT, UK
| | - David TD Childs
- School of Engineering, The University of Glasgow, Glasgow G12 8LT, UK
| | - Ji-Qiang Ning
- Vacuum Interconnected Nanotech Workstation, Suzhou Institute of Nano-Tech and Nano-Bionics, Chinese Academy of Sciences, Suzhou 215123, China
| | - Zhan-Guo Wang
- Key Laboratory of Semiconductor Materials Science, Institute of Semiconductors, Chinese Academy of Sciences, Beijing 100083, China
| | - Feng-Qi Liu
- Key Laboratory of Semiconductor Materials Science, Institute of Semiconductors, Chinese Academy of Sciences, Beijing 100083, China
| | - Zi-Yang Zhang
- Key Lab of Nanodevices and Applications, Suzhou Institute of Nano-Tech and Nano-Bionics, Chinese Academy of Sciences, Suzhou 215123, China
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Freimark D, Ehlicke F, Czermak P. The Need for Imaging Methods in Bioengineering of Three-Dimensional Cell Cultures. Int J Artif Organs 2018. [DOI: 10.1177/039139881003300403] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
The analysis of live cells and tissue is gaining increasing importance in research and development. A number of demands are thus being made on the cultivation and analysis of cell response as well. For certain research approaches, in vitro three-dimensional (3D) cultivation best mimics natural conditions. Nevertheless, the imaging of such 3D environments is still a problem. To understand cell function in 3D, a number of in vivo imaging methods have been developed. This article introduces this field and proposes some interesting and promising imaging techniques for this approach.
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Affiliation(s)
- Denise Freimark
- Institute of Biopharmaceutical Technology, University of Applied Sciences Giessen-Friedberg, Giessen - Germany
| | - Franziska Ehlicke
- Institute of Biopharmaceutical Technology, University of Applied Sciences Giessen-Friedberg, Giessen - Germany
| | - Peter Czermak
- Institute of Biopharmaceutical Technology, University of Applied Sciences Giessen-Friedberg, Giessen - Germany
- Department of Chemical Engineering, Kansas State University, Manhattan, Kansas - USA
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38
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Erchova I, Tumlinson AR, Fergusson J, White N, Drexler W, Sengpiel F, Morgan JE. Optophysiological Characterisation of Inner Retina Responses with High-Resolution Optical Coherence Tomography. Sci Rep 2018; 8:1813. [PMID: 29379036 PMCID: PMC5788978 DOI: 10.1038/s41598-018-19975-x] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2017] [Accepted: 01/03/2018] [Indexed: 11/18/2022] Open
Abstract
Low coherence laser interferometry has revolutionised quantitative biomedical imaging of optically transparent structures at cellular resolutions. We report the first optical recording of neuronal excitation at cellular resolution in the inner retina by quantifying optically recorded stimulus-evoked responses from the retinal ganglion cell layer and comparing them with an electrophysiological standard. We imaged anaesthetised paralysed tree shrews, gated image acquisition, and used numerical filters to eliminate noise arising from retinal movements during respiratory and cardiac cycles. We observed increases in contrast variability in the retinal ganglion cell layer and nerve fibre layer with flash stimuli and gratings. Regions of interest were subdivided into three-dimensional patches (up to 5–15 μm in diameter) based on response similarity. We hypothesise that these patches correspond to individual cells, or segments of blood vessels within the inner retina. We observed a close correlation between the patch optical responses and mean electrical activity of the visual neurons in afferent pathway. While our data suggest that optical imaging of retinal activity is possible with high resolution OCT, the technical challenges are not trivial.
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Affiliation(s)
- Irina Erchova
- School of Optometry and Visual Sciences, Cardiff University, Cardiff, United Kingdom
| | - Alexandre R Tumlinson
- School of Optometry and Visual Sciences, Cardiff University, Cardiff, United Kingdom.,Zeiss Meditec, Dublin, California, USA
| | - James Fergusson
- School of Optometry and Visual Sciences, Cardiff University, Cardiff, United Kingdom
| | - Nick White
- School of Optometry and Visual Sciences, Cardiff University, Cardiff, United Kingdom
| | - Wolfgang Drexler
- Center for Medical Physics & Biom Eng, Medical University Vienna, Vienna, Austria
| | - Frank Sengpiel
- School of Biosciences, Cardiff University, Cardiff, United Kingdom
| | - James E Morgan
- School of Optometry and Visual Sciences, Cardiff University, Cardiff, United Kingdom. .,Ophthalmology, University Hospital of Wales, Cardiff, United Kingdom.
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Kim CS, Ingato D, Wilder-Smith P, Chen Z, Kwon YJ. Stimuli-disassembling gold nanoclusters for diagnosis of early stage oral cancer by optical coherence tomography. NANO CONVERGENCE 2018; 5:3. [PMID: 29399435 PMCID: PMC5785591 DOI: 10.1186/s40580-018-0134-5] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/05/2017] [Accepted: 01/11/2018] [Indexed: 05/26/2023]
Abstract
A key design consideration in developing contrast agents is obtaining distinct, multiple signal changes in diseased tissue. Plasmonic gold nanoparticles (Au NPs) have been developed as contrast agents due to their strong surface plasmon resonance (SPR). This study aims to demonstrate that stimuli-responsive plasmonic Au nanoclusters (Au NCs) can be used as a contrast agent for optical coherence tomography (OCT) in detecting early-stage cancer. Au NPs were clustered via acid-cleavable linkers to synthesize Au NCs that disassemble under mildly acidic conditions into individual Au NPs, simultaneously diminishing SPR effect (quantified by scattering intensity) and increasing Brownian motion (quantified by Doppler variance). The acid-triggered morphological and accompanying optico-physical property changes of the acid-disassembling Au NCs were confirmed by TEM, DLS, UV/Vis, and OCT. Stimuli-responsive Au NCs were applied in a hamster check pouch model carrying early-stage squamous carcinoma tissue. The tissue was visualized by OCT imaging, which showed reduced scattering intensity and increased Doppler variance in the dysplastic tissue. This study demonstrates the promise of diagnosing early-stage cancer using molecularly programmable, inorganic nanomaterial-based contrast agents that are capable of generating multiple, stimuli-triggered diagnostic signals in early-stage cancer.
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Affiliation(s)
- Chang Soo Kim
- Department of Chemical Engineering and Materials Science, University of California, Irvine, 916 Engineering Tower, Irvine, CA 92697-2575 USA
- University of California, Irvine, Beckman Laser Institute, 1002 Health Sciences Road East, Irvine, CA 92612 USA
| | - Dominique Ingato
- Department of Chemical Engineering and Materials Science, University of California, Irvine, 916 Engineering Tower, Irvine, CA 92697-2575 USA
| | - Petra Wilder-Smith
- University of California, Irvine, Beckman Laser Institute, 1002 Health Sciences Road East, Irvine, CA 92612 USA
| | - Zhongping Chen
- Department of Chemical Engineering and Materials Science, University of California, Irvine, 916 Engineering Tower, Irvine, CA 92697-2575 USA
- University of California, Irvine, Beckman Laser Institute, 1002 Health Sciences Road East, Irvine, CA 92612 USA
- Department of Biomedical Engineering, University of California, Irvine, 3120 Natural Sciences II, Irvine, CA 92697-2715 USA
- Department of Chemical Engineering and Materials Science, University of California, Irvine, 1002 Health Sciences Rd, Irvine, CA 92617 USA
| | - Young Jik Kwon
- Department of Chemical Engineering and Materials Science, University of California, Irvine, 916 Engineering Tower, Irvine, CA 92697-2575 USA
- Department of Biomedical Engineering, University of California, Irvine, 3120 Natural Sciences II, Irvine, CA 92697-2715 USA
- Department of Pharmaceutical Sciences, University of California, Irvine, 147 Bison Modular, Irvine, CA 92697 USA
- Department of Molecular Biology and Biochemistry, University of California, Irvine, 3205 McGaugh Hall, Irvine, CA 92697-3900 USA
- Department of Pharmaceutical Sciences, University of California, Irvine, 132 Sprague Hall, Irvine, CA 92697 USA
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Shi W, Gao W, Chen C, Yang VXD. Differential standard deviation of log-scale intensity based optical coherence tomography angiography. JOURNAL OF BIOPHOTONICS 2017; 10:1597-1606. [PMID: 28133932 DOI: 10.1002/jbio.201600264] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/13/2016] [Revised: 12/25/2016] [Accepted: 01/12/2017] [Indexed: 05/08/2023]
Abstract
In this paper, a differential standard deviation of log-scale intensity (DSDLI) based optical coherence tomography angiography (OCTA) is presented for calculating microvascular images of human skin. The DSDLI algorithm calculates the variance in difference images of two consecutive log-scale intensity based structural images from the same position along depth direction to contrast blood flow. The en face microvascular images were then generated by calculating the standard deviation of the differential log-scale intensities within the specific depth range, resulting in an improvement in spatial resolution and SNR in microvascular images compared to speckle variance OCT and power intensity differential method. The performance of DSDLI was testified by both phantom and in vivo experiments. In in vivo experiments, a self-adaptive sub-pixel image registration algorithm was performed to remove the bulk motion noise, where 2D Fourier transform was utilized to generate new images with spatial interval equal to half of the distance between two pixels in both fast-scanning and depth directions. The SNRs of signals of flowing particles are improved by 7.3 dB and 6.8 dB on average in phantom and in vivo experiments, respectively, while the average spatial resolution of images of in vivo blood vessels is increased by 21%.
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Affiliation(s)
- Weisong Shi
- Nanjing University of Science and Technology, Department of Optical Engineering, Nanjing, Jiangsu, China
| | - Wanrong Gao
- Nanjing University of Science and Technology, Department of Optical Engineering, Nanjing, Jiangsu, China
| | - Chaoliang Chen
- Ryerson University, Department of Electrical and Computer Engineering, Biophotonics and Bioengineering Lab, Toronto, Ontario, Canada
| | - Victor X D Yang
- Ryerson University, Department of Electrical and Computer Engineering, Biophotonics and Bioengineering Lab, Toronto, Ontario, Canada
- Sunnybrook Health Sciences Centre, Division of Neurosurgery, Toronto, Ontario, Canada
- University of Toronto, Division of Neurosurgery, Faculty of Medicine, Toronto, Ontario, Canada
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Cooper RF, Tuten WS, Dubra A, Brainard DH, Morgan JIW. Non-invasive assessment of human cone photoreceptor function. BIOMEDICAL OPTICS EXPRESS 2017; 8:5098-5112. [PMID: 29188106 PMCID: PMC5695956 DOI: 10.1364/boe.8.005098] [Citation(s) in RCA: 38] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/17/2017] [Revised: 10/04/2017] [Accepted: 10/08/2017] [Indexed: 05/18/2023]
Abstract
Vision begins when light isomerizes the photopigments within photoreceptors. Noninvasive cellular-scale observation of the structure of the human photoreceptor mosaic is made possible through the use of adaptive optics (AO) enhanced ophthalmoscopes, but establishing noninvasive objective measures of photoreceptor function on a similar scale has been more difficult. AO ophthalmoscope images acquired with near-infrared light show that individual cone photoreceptor reflectance can change in response to a visible stimulus. Here we show that the intrinsic response depends on stimulus wavelength and intensity, and that its action spectrum is well-matched to the spectral sensitivity of cone-mediated vision. Our results demonstrate that the cone reflectance response is mediated by photoisomerization, thus making it a direct measure of photoreceptor function.
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Affiliation(s)
- Robert F. Cooper
- Ophthalmology, Scheie Eye Institute, University of Pennsylvania, Philadelphia, PA, USA
- Psychology, University of Pennsylvania, Philadelphia, PA, USA
| | - William S. Tuten
- Ophthalmology, Scheie Eye Institute, University of Pennsylvania, Philadelphia, PA, USA
- Psychology, University of Pennsylvania, Philadelphia, PA, USA
| | - Alfredo Dubra
- Ophthalmology, Stanford University, Stanford, CA, USA
| | | | - Jessica I. W. Morgan
- Ophthalmology, Scheie Eye Institute, University of Pennsylvania, Philadelphia, PA, USA
- Center for Advanced Retinal and Ocular Therapeutics, University of Pennsylvania, Philadelphia, PA, USA
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42
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Mokbul MI. Optical Coherence Tomography: Basic Concepts and Applications in Neuroscience Research. J Med Eng 2017; 2017:3409327. [PMID: 29214158 PMCID: PMC5682075 DOI: 10.1155/2017/3409327] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2017] [Revised: 06/22/2017] [Accepted: 09/14/2017] [Indexed: 12/28/2022] Open
Abstract
Optical coherence tomography is a micrometer-scale imaging modality that permits label-free, cross-sectional imaging of biological tissue microstructure using tissue backscattering properties. After its invention in the 1990s, OCT is now being widely used in several branches of neuroscience as well as other fields of biomedical science. This review study reports an overview of OCT's applications in several branches or subbranches of neuroscience such as neuroimaging, neurology, neurosurgery, neuropathology, and neuroembryology. This study has briefly summarized the recent applications of OCT in neuroscience research, including a comparison, and provides a discussion of the remaining challenges and opportunities in addition to future directions. The chief aim of the review study is to draw the attention of a broad neuroscience community in order to maximize the applications of OCT in other branches of neuroscience too, and the study may also serve as a benchmark for future OCT-based neuroscience research. Despite some limitations, OCT proves to be a useful imaging tool in both basic and clinical neuroscience research.
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Affiliation(s)
- Mobin Ibne Mokbul
- Notre Dame College, Motijheel Circular Road, Arambagh, Motijheel, Dhaka 1000, Bangladesh
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43
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Pi S, Camino A, Zhang M, Cepurna W, Liu G, Huang D, Morrison J, Jia Y. Angiographic and structural imaging using high axial resolution fiber-based visible-light OCT. BIOMEDICAL OPTICS EXPRESS 2017; 8:4595-4608. [PMID: 29082087 PMCID: PMC5654802 DOI: 10.1364/boe.8.004595] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/03/2017] [Revised: 09/14/2017] [Accepted: 09/17/2017] [Indexed: 05/20/2023]
Abstract
Optical coherence tomography using visible-light sources can increase the axial resolution without the need for broader spectral bandwidth. Here, a high-resolution, fiber-based, visible-light optical coherence tomography system is built and used to image normal retina in rats and blood vessels in chicken embryo. In the rat retina, accurate segmentation of retinal layer boundaries and quantification of layer thicknesses are accomplished. Furthermore, three distinct capillary plexuses in the retina and the choriocapillaris are identified and the characteristic pattern of the nerve fiber layer thickness in rats is revealed. In the chicken embryo model, the microvascular network and a venous bifurcation are examined and the ability to identify and segment large vessel walls is demonstrated.
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Affiliation(s)
- Shaohua Pi
- Casey Eye Institute, Oregon Health & Science University, Portland, OR, USA
- These authors contributed equally to this work
| | - Acner Camino
- Casey Eye Institute, Oregon Health & Science University, Portland, OR, USA
- These authors contributed equally to this work
| | - Miao Zhang
- Optovue Inc. 2800 Bayview Dr., Fremont, CA 94538, USA
| | - William Cepurna
- Casey Eye Institute, Oregon Health & Science University, Portland, OR, USA
| | - Gangjun Liu
- Casey Eye Institute, Oregon Health & Science University, Portland, OR, USA
| | - David Huang
- Casey Eye Institute, Oregon Health & Science University, Portland, OR, USA
| | - John Morrison
- Casey Eye Institute, Oregon Health & Science University, Portland, OR, USA
| | - Yali Jia
- Casey Eye Institute, Oregon Health & Science University, Portland, OR, USA
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44
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Campos A, Campos EJ, Martins J, Ambrósio AF, Silva R. Viewing the choroid: where we stand, challenges and contradictions in diabetic retinopathy and diabetic macular oedema. Acta Ophthalmol 2017; 95:446-459. [PMID: 27545332 DOI: 10.1111/aos.13210] [Citation(s) in RCA: 50] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/29/2016] [Accepted: 06/18/2016] [Indexed: 02/01/2023]
Abstract
Diabetic macular oedema (DMO) is the leading cause of vision loss in the working-age population. Blood-retinal barrier (BRB) dysfunction in diabetic retinopathy (DR), mainly at the level of the retinal vessels, has long been related with leakage and fluid accumulation, leading to macular oedema. However, the nourishment of the macula is provided by the choroid and a diabetic choroidopathy has been described. Therefore, there has been a growing interest in studying the role of the choroid in the pathophysiology of DR and DMO, mainly by optical coherence tomography (OCT). Nevertheless, there are conflicting results in the different studies. We summarize the results from the available studies, describe the limitations and confounding factors and discuss future procedures to avoid bias.
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Affiliation(s)
- António Campos
- Faculty of Medicine; Institute for Biomedical Imaging and Life Sciences (IBILI); University of Coimbra; Coimbra Portugal
- CNC.IBILI; University of Coimbra; Coimbra Portugal
- Department of Ophthalmology; Leiria Hospital; Leiria Portugal
| | - Elisa J. Campos
- Faculty of Medicine; Institute for Biomedical Imaging and Life Sciences (IBILI); University of Coimbra; Coimbra Portugal
- CNC.IBILI; University of Coimbra; Coimbra Portugal
| | - João Martins
- Faculty of Medicine; Institute for Biomedical Imaging and Life Sciences (IBILI); University of Coimbra; Coimbra Portugal
- CNC.IBILI; University of Coimbra; Coimbra Portugal
| | - António Francisco Ambrósio
- Faculty of Medicine; Institute for Biomedical Imaging and Life Sciences (IBILI); University of Coimbra; Coimbra Portugal
- CNC.IBILI; University of Coimbra; Coimbra Portugal
- Association for Innovation and Biomedical Research on Light and Image (AIBILI); Coimbra Portugal
| | - Rufino Silva
- Faculty of Medicine; Institute for Biomedical Imaging and Life Sciences (IBILI); University of Coimbra; Coimbra Portugal
- CNC.IBILI; University of Coimbra; Coimbra Portugal
- Association for Innovation and Biomedical Research on Light and Image (AIBILI); Coimbra Portugal
- Ophthalmology Department; Centro Hospitalar Universitário de Coimbra (CHUC); Coimbra Portugal
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45
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Chemnitz M, Gebhardt M, Gaida C, Stutzki F, Kobelke J, Limpert J, Tünnermann A, Schmidt MA. Hybrid soliton dynamics in liquid-core fibres. Nat Commun 2017; 8:42. [PMID: 28663548 PMCID: PMC5491526 DOI: 10.1038/s41467-017-00033-5] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2016] [Accepted: 05/02/2017] [Indexed: 11/13/2022] Open
Abstract
The discovery of optical solitons being understood as temporally and spectrally stationary optical states has enabled numerous innovations among which, most notably, supercontinuum light sources have become widely used in both fundamental and applied sciences. Here, we report on experimental evidence for dynamics of hybrid solitons-a new type of solitary wave, which emerges as a result of a strong non-instantaneous nonlinear response in CS2-filled liquid-core optical fibres. Octave-spanning supercontinua in the mid-infrared region are observed when pumping the hybrid waveguide with a 460 fs laser (1.95 μm) in the anomalous dispersion regime at nanojoule-level pulse energies. A detailed numerical analysis well correlated with the experiment uncovers clear indicators of emerging hybrid solitons, revealing their impact on the bandwidth, onset energy and noise characteristics of the supercontinua. Our study highlights liquid-core fibres as a promising platform for fundamental optics and applications towards novel coherent and reconfigurable light sources.Here, Chemnitz et al. report experimental evidence for hybrid solitons - a type of solitary wave, which emerges as a result of a strong non-instantaneous nonlinear response in CS2-filled liquid-core optical fibres, demonstrating efficient soliton-driven supercontinuum generation.
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Affiliation(s)
- Mario Chemnitz
- Leibniz Institute of Photonic Technology, Albert-Einstein-Strasse 9, Jena, 07745, Germany.
| | - Martin Gebhardt
- Institute of Applied Physics, Abbe Center of Photonics, Friedrich-Schiller-University Jena, Albert-Einstein-Strasse 15, Jena, 07745, Germany
- Helmholtz-Institute Jena, Froebelstieg 3, Jena, 07743, Germany
| | - Christian Gaida
- Institute of Applied Physics, Abbe Center of Photonics, Friedrich-Schiller-University Jena, Albert-Einstein-Strasse 15, Jena, 07745, Germany
| | - Fabian Stutzki
- Institute of Applied Physics, Abbe Center of Photonics, Friedrich-Schiller-University Jena, Albert-Einstein-Strasse 15, Jena, 07745, Germany
| | - Jens Kobelke
- Leibniz Institute of Photonic Technology, Albert-Einstein-Strasse 9, Jena, 07745, Germany
| | - Jens Limpert
- Institute of Applied Physics, Abbe Center of Photonics, Friedrich-Schiller-University Jena, Albert-Einstein-Strasse 15, Jena, 07745, Germany
- Helmholtz-Institute Jena, Froebelstieg 3, Jena, 07743, Germany
- Fraunhofer Institute for Applied Optics and Precision Engineering, Albert-Einstein-Strasse 7, Jena, 07745, Germany
| | - Andreas Tünnermann
- Institute of Applied Physics, Abbe Center of Photonics, Friedrich-Schiller-University Jena, Albert-Einstein-Strasse 15, Jena, 07745, Germany
- Helmholtz-Institute Jena, Froebelstieg 3, Jena, 07743, Germany
- Fraunhofer Institute for Applied Optics and Precision Engineering, Albert-Einstein-Strasse 7, Jena, 07745, Germany
| | - Markus A Schmidt
- Leibniz Institute of Photonic Technology, Albert-Einstein-Strasse 9, Jena, 07745, Germany
- Otto-Schott-Institute of Material Research, Friedrich-Schiller-University of Jena, Fraunhoferstrasse 6, Jena, 07743, Germany
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Adabi S, Turani Z, Fatemizadeh E, Clayton A, Nasiriavanaki M. Optical Coherence Tomography Technology and Quality Improvement Methods for Optical Coherence Tomography Images of Skin: A Short Review. Biomed Eng Comput Biol 2017; 8:1179597217713475. [PMID: 28638245 PMCID: PMC5470862 DOI: 10.1177/1179597217713475] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2017] [Accepted: 05/03/2017] [Indexed: 12/11/2022] Open
Abstract
Optical coherence tomography (OCT) delivers 3-dimensional images of tissue microstructures. Although OCT imaging offers a promising high-resolution method, OCT images experience some artifacts that lead to misapprehension of tissue structures. Speckle, intensity decay, and blurring are 3 major artifacts in OCT images. Speckle is due to the low coherent light source used in the configuration of OCT. Intensity decay is a deterioration of light with respect to depth, and blurring is the consequence of deficiencies of optical components. In this short review, we summarize some of the image enhancement algorithms for OCT images which address the abovementioned artifacts.
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Affiliation(s)
- Saba Adabi
- Department of Biomedical Engineering, College of Engineering and School of Medicine, Wayne State University, Detroit, MI, USA
- Department of Applied Electronics, Engineering Faculty, Roma Tre University, Roma, Italy
| | - Zahra Turani
- Department of Electrical Engineering, Sharif University of Technology, Tehran, Iran
| | - Emad Fatemizadeh
- Department of Electrical Engineering, Sharif University of Technology, Tehran, Iran
| | - Anne Clayton
- Department of Biomedical Engineering, College of Engineering and School of Medicine, Wayne State University, Detroit, MI, USA
| | - Mohammadreza Nasiriavanaki
- Department of Biomedical Engineering, College of Engineering and School of Medicine, Wayne State University, Detroit, MI, USA
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Choux A, Jeannot L, Gillot F, Sandras F, Martin M, Gauvin C, Pascal G, Busvelle E, Gauthier JP, Baclet P. Spatial Reconstruction Algorithm of DT Layer in Cryogenic Targets Using Optical Techniques. FUSION SCIENCE AND TECHNOLOGY 2017. [DOI: 10.13182/fst07-a1470] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- A. Choux
- CEA, Centre de Valduc, Département de Recherche sur les Matériaux Nucléaires, Service Microcibles, 21120 Is Sur Tilie, France
| | - L. Jeannot
- CEA, Centre de Valduc, Département de Recherche sur les Matériaux Nucléaires, Service Microcibles, 21120 Is Sur Tilie, France
| | - F. Gillot
- CEA, Centre de Valduc, Département de Recherche sur les Matériaux Nucléaires, Service Microcibles, 21120 Is Sur Tilie, France
| | - F. Sandras
- CEA, Centre de Valduc, Département de Recherche sur les Matériaux Nucléaires, Service Microcibles, 21120 Is Sur Tilie, France
| | - M. Martin
- CEA, Centre de Valduc, Département de Recherche sur les Matériaux Nucléaires, Service Microcibles, 21120 Is Sur Tilie, France
| | - C. Gauvin
- CEA, Centre de Valduc, Département de Recherche sur les Matériaux Nucléaires, Service Microcibles, 21120 Is Sur Tilie, France
| | - G. Pascal
- CEA, Centre de Valduc, Département de Recherche sur les Matériaux Nucléaires, Service Microcibles, 21120 Is Sur Tilie, France
| | - E. Busvelle
- Université de Bourgogne, LE2I UMR CNRS 5158, 21000 Dijon, France
| | - J. P. Gauthier
- Université de Bourgogne, LE2I UMR CNRS 5158, 21000 Dijon, France
| | - P. Baclet
- CEA, Centre de Valduc, Département de Recherche sur les Matériaux Nucléaires, Service Microcibles, 21120 Is Sur Tilie, France
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48
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Cabrera DeBuc D, Tian J, Bates N, Somfai GM. Inter-session repeatability of retinal layer thickness in optical coherence tomography. MEDICAL IMAGING 2017: BIOMEDICAL APPLICATIONS IN MOLECULAR, STRUCTURAL, AND FUNCTIONAL IMAGING 2017. [DOI: 10.1117/12.2254640] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/30/2023]
Affiliation(s)
| | - Jing Tian
- Bascom Palmer Eye Institute (United States)
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49
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Sun H, Merrill D, An R, Turek J, Matei D, Nolte DD. Biodynamic imaging for phenotypic profiling of three-dimensional tissue culture. JOURNAL OF BIOMEDICAL OPTICS 2017; 22:16007. [PMID: 28301634 PMCID: PMC5221565 DOI: 10.1117/1.jbo.22.1.016007] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/12/2016] [Accepted: 11/28/2016] [Indexed: 05/04/2023]
Abstract
Three-dimensional (3-D) tissue culture represents a more biologically relevant environment for testing new drugs compared to conventional two-dimensional cancer cell culture models. Biodynamic imaging is a high-content 3-D optical imaging technology based on low-coherence interferometry and digital holography that uses dynamic speckle as high-content image contrast to probe deep inside 3-D tissue. Speckle contrast is shown to be a scaling function of the acquisition time relative to the persistence time of intracellular transport and hence provides a measure of cellular activity. Cellular responses of 3-D multicellular spheroids to paclitaxel are compared among three different growth techniques: rotating bioreactor (BR), hanging-drop (HD), and nonadherent (U-bottom, UB) plate spheroids, compared with ex vivo living tissues. HD spheroids have the most homogeneous tissue, whereas BR spheroids display large sample-to-sample variability as well as spatial heterogeneity. The responses of BR-grown tumor spheroids to paclitaxel are more similar to those of ex vivo biopsies than the responses of spheroids grown using HD or plate methods. The rate of mitosis inhibition by application of taxol is measured through tissue dynamics spectroscopic imaging, demonstrating the ability to monitor antimitotic chemotherapy. These results illustrate the potential use of low-coherence digital holography for 3-D pharmaceutical screening applications.
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Affiliation(s)
- Hao Sun
- Purdue University, Department of Physics, 525 Northwestern Avenue, West Lafayette, Indiana 47907, United States
| | - Daniel Merrill
- Purdue University, Department of Physics, 525 Northwestern Avenue, West Lafayette, Indiana 47907, United States
| | - Ran An
- Animated Dynamics, Inc., 5770 Decatur Boulevard Suite A, Indianapolis, Indiana 46241, United States
| | - John Turek
- Purdue University, Department of Basic Medical Sciences, West Lafayette, 625 Harrison Street, Indiana 47907, United States
| | - Daniela Matei
- Northwestern University School of Medicine, 303 East SuperiorChicago, Illinois 60611, United States
| | - David D. Nolte
- Purdue University, Department of Physics, 525 Northwestern Avenue, West Lafayette, Indiana 47907, United States
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50
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Mallipatna A, Vinekar A, Jayadev C, Dabir S, Sivakumar M, Krishnan N, Mehta P, Berendschot T, Yadav NK. The use of handheld spectral domain optical coherence tomography in pediatric ophthalmology practice: Our experience of 975 infants and children. Indian J Ophthalmol 2016; 63:586-93. [PMID: 26458476 PMCID: PMC4652249 DOI: 10.4103/0301-4738.167108] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023] Open
Abstract
Purpose: Optical coherence tomography (OCT) is an important imaging tool assessing retinal architecture. In this article, we report a single centers experience of using handheld spectral domain (SD)-OCT in a pediatric population using the Envisu 2300 (Bioptigen Inc., Research Triangle Park, NC, USA). Methods: We studied SD-OCT images from 975 patients imaged from January 2011 to December 2014. The variety of cases that underwent an SD-OCT was analyzed. Cases examples from different case scenarios were selected to showcase unique examples of many diseases. Results: Three hundred and sixty-eight infants (37.7%) were imaged for retinopathy of prematurity, 362 children (37.1%) underwent the test for evaluation of suboptimal vision or an unexplained vision loss, 126 children (12.9%) for evaluation of nystagmus or night blindness, 54 children (5.5%) for an intraocular tumor or a mass lesion such as retinoblastoma, and 65 children (6.7%) for other diseases of the pediatric retina. The unique findings in the retinal morphology seen with some of these diseases are discussed. Conclusion: The handheld SD-OCT is useful in the evaluation of the pediatric retinal diseases. The test is useful in the assessment of vision development in premature children, evaluation of unexplained vision loss and amblyopia, nystagmus and night blindness, and intraocular tumors (including retinoblastoma).
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Affiliation(s)
- Ashwin Mallipatna
- Department of Pediatric Ophthalmology, Narayana Nethralaya Postgraduate Institute of Ophthalmology, Bengaluru, Karnataka, India
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