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Dubois J, Field RM, Jawhar S, Koch EM, Aghajan ZM, Miller N, Perdue KL, Taylor M. Reliability of brain metrics derived from a Time-Domain Functional Near-Infrared Spectroscopy System. Sci Rep 2024; 14:17500. [PMID: 39080458 PMCID: PMC11289386 DOI: 10.1038/s41598-024-68555-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2024] [Accepted: 07/24/2024] [Indexed: 08/02/2024] Open
Abstract
With the growing interest in establishing brain-based biomarkers for precision medicine, there is a need for noninvasive, scalable neuroimaging devices that yield valid and reliable metrics. Kernel's second-generation Flow2 Time-Domain Functional Near-Infrared Spectroscopy (TD-fNIRS) system meets the requirements of noninvasive and scalable neuroimaging, and uses a validated modality to measure brain function. In this work, we investigate the test-retest reliability (TRR) of a set of metrics derived from the Flow2 recordings. We adopted a repeated-measures design with 49 healthy participants, and quantified TRR over multiple time points and different headsets-in different experimental conditions including a resting state, a sensory, and a cognitive task. Results demonstrated high reliability in resting state features including hemoglobin concentrations, head tissue light attenuation, amplitude of low frequency fluctuations, and functional connectivity. Additionally, passive auditory and Go/No-Go inhibitory control tasks each exhibited similar activation patterns across days. Notably, areas with the highest reliability were in auditory regions during the auditory task, and right prefrontal regions during the Go/No-Go task, consistent with prior literature. This study underscores the reliability of Flow2-derived metrics, supporting its potential to actualize the vision of using brain-based biomarkers for diagnosis, treatment selection and treatment monitoring of neuropsychiatric and neurocognitive disorders.
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Affiliation(s)
- Julien Dubois
- Kernel, 10361 Jefferson Blvd, Culver City, CA, 90232, USA
| | - Ryan M Field
- Kernel, 10361 Jefferson Blvd, Culver City, CA, 90232, USA
| | - Sami Jawhar
- Kernel, 10361 Jefferson Blvd, Culver City, CA, 90232, USA
| | - Erin M Koch
- Kernel, 10361 Jefferson Blvd, Culver City, CA, 90232, USA
| | | | - Naomi Miller
- Kernel, 10361 Jefferson Blvd, Culver City, CA, 90232, USA
| | | | - Moriah Taylor
- Kernel, 10361 Jefferson Blvd, Culver City, CA, 90232, USA
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Mogharari N, Wojtkiewicz S, Borycki D, Liebert A, Kacprzak M. Time-domain diffuse correlation spectroscopy at large source detector separation for cerebral blood flow recovery. BIOMEDICAL OPTICS EXPRESS 2024; 15:4330-4344. [PMID: 39022555 PMCID: PMC11249683 DOI: 10.1364/boe.523514] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/11/2024] [Revised: 05/29/2024] [Accepted: 05/31/2024] [Indexed: 07/20/2024]
Abstract
Time-domain diffuse correlation spectroscopy (td-DCS) enables the depth discrimination in tissue's blood flow recovery, considering the fraction of photons detected with higher time of flight (TOF) and longer pathlength through the tissue. However, the recovery result depends on factors such as the instrument response function (IRF), analyzed TOF gate start time, gate width and the source-detector separation (SDS). In this research we evaluate the performance of the td-DCS technique at three SDSs of 1.5, 2 and 2.5 cm to recover cerebral blood flow (CBF). To do that we presented comprehensive characterization of the td-DCS system through a series of phantom experiments. First by quality metrices such as coefficient of variation and contrast-to-noise ratios, we identified optimal time gate(s) of the TOF to extract dynamics of particles. Then using sensitivity metrices, each SDS ability to detect dynamics of particles in superficial and deeper layer was evaluated. Finally, td-DCS at each SDS was tested on healthy volunteers during cuff occlusion test and breathing tasks. According to phantom measurements, the sensitivity to estimate perfusion within the deep layer located at depth of 1.5 cm from the surface can be increased more than two times when the SDS increases from 1.5 cm to 2.5 cm.
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Affiliation(s)
- Neda Mogharari
- Nalecz Institute of Biocybernetics and Biomedical Engineering, Polish Academy of Sciences, Poland
| | - Stanisław Wojtkiewicz
- Nalecz Institute of Biocybernetics and Biomedical Engineering, Polish Academy of Sciences, Poland
| | - Dawid Borycki
- Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, Poland
| | - Adam Liebert
- Nalecz Institute of Biocybernetics and Biomedical Engineering, Polish Academy of Sciences, Poland
| | - Michał Kacprzak
- Nalecz Institute of Biocybernetics and Biomedical Engineering, Polish Academy of Sciences, Poland
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3
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Dooley M, Luckett J, Alexander MR, Matousek P, Dehghani H, Ghaemmaghami AM, Notingher I. Optimization of diffuse Raman spectroscopy for in-vivo quantification of foreign body response in a small animal model. BIOMEDICAL OPTICS EXPRESS 2023; 14:6592-6606. [PMID: 38420302 PMCID: PMC10898571 DOI: 10.1364/boe.512118] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/13/2023] [Accepted: 11/13/2023] [Indexed: 03/02/2024]
Abstract
Diffuse Raman spectroscopy (DRS) allows subsurface molecular analysis of optically turbid samples. Numerical modeling of light propagation was used as a method for improving the design of an DRS instrument to maximize the signal to noise ratio (SNR) while ensuring safe laser exposure parameters required for in-vivo measurements. Experimental validation of the model was performed on both phantom samples and disks implanted postmortem to mimic the typical response to foreign bodies (formation of a fibrotic capsule around an implant). A reduction of laser exposure of over 1500-fold was achieved over previous studies whilst maintaining the same Raman collection rates and reaching the safe power density of 3 mW/mm2. The validation of this approach in a subcutaneous implant in a mouse cadaver showed a further improvement of 1.5-fold SNR, with a thickness limit of detection for the fibrotic layer of 23 µm, under the same acquisition times. In the animal body, a thickness limit of detection of 16 µm was achieved. These results demonstrate the feasibility of numerical model-based optimization for DRS, and that the technique can be improved sufficiently to be used for in-vivo measurement of collagenous capsule formation as a result of the foreign body response in murine models.
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Affiliation(s)
- Max Dooley
- School of Physics and Astronomy, University of Nottingham, University Park, Nottingham, NG7 2RD, UK
| | - Jeni Luckett
- School of Life Sciences, University of Nottingham, University Park, Nottingham NG7 2RD, UK
| | - Morgan R. Alexander
- School of Pharmacy, University of Nottingham, University Park, Nottingham NG7 2RD, UK
| | - Pavel Matousek
- STFC Rutherford Appleton Laboratory, Central Laser Facility, Research Complex at Harwell, UK Research and Innovation (UKRI), Harwell Oxford OX11 0QX, UK
| | - Hamid Dehghani
- School of Computer Sciences, University of Birmingham, Birmingham, B15 2TT, UK
| | - Amir M. Ghaemmaghami
- School of Life Sciences, University of Nottingham, University Park, Nottingham NG7 2RD, UK
| | - Ioan Notingher
- School of Physics and Astronomy, University of Nottingham, University Park, Nottingham, NG7 2RD, UK
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Dubois J, Field RM, Jawhar S, Jewison A, Koch EM, M Aghajan Z, Miller N, Perdue KL, Taylor M. Change in brain asymmetry reflects level of acute alcohol intoxication and impacts on inhibitory control. Sci Rep 2023; 13:10278. [PMID: 37355749 PMCID: PMC10290692 DOI: 10.1038/s41598-023-37305-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2023] [Accepted: 06/20/2023] [Indexed: 06/26/2023] Open
Abstract
Alcohol is one of the most commonly used substances and frequently abused, yet little is known about the neural underpinnings driving variability in inhibitory control performance after ingesting alcohol. This study was a single-blind, placebo-controlled, randomized design with participants (N = 48 healthy, social drinkers) completing three study visits. At each visit participants received one of three alcohol doses; namely, a placebo dose [equivalent Blood Alcohol Concentration (BAC) = 0.00%], a low dose of alcohol (target BAC = 0.04%), or a moderate dose of alcohol (target BAC = 0.08%). To measure inhibitory control, participants completed a Go/No-go task paradigm twice during each study visit, once immediately before dosing and once after, while their brain activity was measured with time-domain functional near-infrared spectroscopy (TD-fNIRS). BAC and subjective effects of alcohol were also assessed. We report decreased behavioral performance for the moderate dose of alcohol, but not the low or placebo doses. We observed right lateralized inhibitory prefrontal activity during go-no-go blocks, consistent with prior literature. Using standard and novel metrics of lateralization, we were able to significantly differentiate between all doses. Lastly, we demonstrate that these metrics are not only related to behavioral performance during inhibitory control, but also provide complementary information to the legal gold standard of intoxication (i.e. BAC).
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Affiliation(s)
- Julien Dubois
- Kernel, 5042 Wilshire Blvd, #26878, Los Angeles, CA, 90036, USA
| | - Ryan M Field
- Kernel, 5042 Wilshire Blvd, #26878, Los Angeles, CA, 90036, USA
| | - Sami Jawhar
- Kernel, 5042 Wilshire Blvd, #26878, Los Angeles, CA, 90036, USA
| | - Austin Jewison
- Kernel, 5042 Wilshire Blvd, #26878, Los Angeles, CA, 90036, USA
| | - Erin M Koch
- Kernel, 5042 Wilshire Blvd, #26878, Los Angeles, CA, 90036, USA
| | - Zahra M Aghajan
- Kernel, 5042 Wilshire Blvd, #26878, Los Angeles, CA, 90036, USA
| | - Naomi Miller
- Kernel, 5042 Wilshire Blvd, #26878, Los Angeles, CA, 90036, USA
| | | | - Moriah Taylor
- Kernel, 5042 Wilshire Blvd, #26878, Los Angeles, CA, 90036, USA
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Jiang J, Ackermann M, Russomanno E, Di Costanzo Mata A, Charbon E, Wolf M, Kalyanov A. Resolution and penetration depth of reflection-mode time-domain near infrared optical tomography using a ToF SPAD camera. BIOMEDICAL OPTICS EXPRESS 2022; 13:6711-6723. [PMID: 36589570 PMCID: PMC9774846 DOI: 10.1364/boe.470985] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/20/2022] [Revised: 09/29/2022] [Accepted: 09/29/2022] [Indexed: 06/17/2023]
Abstract
In a turbid medium such as biological tissue, near-infrared optical tomography (NIROT) can image the oxygenation, a highly relevant clinical parameter. To be an efficient diagnostic tool, NIROT has to have high spatial resolution and depth sensitivity, fast acquisition time, and be easy to use. Since many tissues cannot be penetrated by near-infrared light, such tissue needs to be measured in reflection mode, i.e., where light emission and detection components are placed on the same side. Thanks to the recent advance in single-photon avalanche diode (SPAD) array technology, we have developed a compact reflection-mode time-domain (TD) NIROT system with a large number of channels, which is expected to substantially increase the resolution and depth sensitivity of the oxygenation images. The aim was to test this experimentally for our SPAD camera-empowered TD NIROT system. Experiments with one and two inclusions, i.e., optically dense spheres of 5mm radius, immersed in turbid liquid were conducted. The inclusions were placed at depths from 10mm to 30mm and moved across the field-of-view. In the two-inclusion experiment, two identical spheres were placed at a lateral distance of 8mm. We also compared short exposure times of 1s, suitable for dynamic processes, with a long exposure of 100s. Additionally, we imaged complex geometries inside the turbid medium, which represented structural elements of a biological object. The quality of the reconstructed images was quantified by the root mean squared error (RMSE), peak signal-to-noise ratio (PSNR), and dice similarity. The two small spheres were successfully resolved up to a depth of 30mm. We demonstrated robust image reconstruction even at 1s exposure. Furthermore, the complex geometries were also successfully reconstructed. The results demonstrated a groundbreaking level of enhanced performance of the NIROT system based on a SPAD camera.
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Affiliation(s)
- Jingjing Jiang
- Biomedical Optics Research Laboratory, Dept. of Neonatology, University Hospital Zurich and University of Zurich, Switzerland
| | - Meret Ackermann
- Biomedical Optics Research Laboratory, Dept. of Neonatology, University Hospital Zurich and University of Zurich, Switzerland
| | - Emanuele Russomanno
- Biomedical Optics Research Laboratory, Dept. of Neonatology, University Hospital Zurich and University of Zurich, Switzerland
| | - Aldo Di Costanzo Mata
- Biomedical Optics Research Laboratory, Dept. of Neonatology, University Hospital Zurich and University of Zurich, Switzerland
| | - Edoardo Charbon
- Advanced Quantum Architecture Laboratory, EPFL, 2002 Neuchâtel, Switzerland
| | - Martin Wolf
- Biomedical Optics Research Laboratory, Dept. of Neonatology, University Hospital Zurich and University of Zurich, Switzerland
| | - Alexander Kalyanov
- Biomedical Optics Research Laboratory, Dept. of Neonatology, University Hospital Zurich and University of Zurich, Switzerland
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Samaei S, Nowacka K, Gerega A, Pastuszak Ż, Borycki D. Continuous-wave parallel interferometric near-infrared spectroscopy (CW πNIRS) with a fast two-dimensional camera. BIOMEDICAL OPTICS EXPRESS 2022; 13:5753-5774. [PMID: 36733725 PMCID: PMC9872890 DOI: 10.1364/boe.472643] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/08/2022] [Revised: 09/16/2022] [Accepted: 10/01/2022] [Indexed: 06/02/2023]
Abstract
Interferometric near-infrared spectroscopy (iNIRS) is an optical method that noninvasively measures the optical and dynamic properties of the human brain in vivo. However, the original iNIRS technique uses single-mode fibers for light collection, which reduces the detected light throughput. The reduced light throughput is compensated by the relatively long measurement or integration times (∼1 sec), which preclude monitoring of rapid blood flow changes that could be linked to neural activation. Here, we propose parallel interferometric near-infrared spectroscopy (πNIRS) to overcome this limitation. In πNIRS we use multi-mode fibers for light collection and a high-speed, two-dimensional camera for light detection. Each camera pixel acts effectively as a single iNIRS channel. So, the processed signals from each pixel are spatially averaged to reduce the overall integration time. Moreover, interferometric detection provides us with the unique capability of accessing complex information (amplitude and phase) about the light remitted from the sample, which with more than 8000 parallel channels, enabled us to sense the cerebral blood flow with only a 10 msec integration time (∼100x faster than conventional iNIRS). In this report, we have described the theoretical foundations and possible ways to implement πNIRS. Then, we developed a prototype continuous wave (CW) πNIRS system and validated it in liquid phantoms. We used our CW πNIRS to monitor the pulsatile blood flow in a human forearm in vivo. Finally, we demonstrated that CW πNIRS could monitor activation of the prefrontal cortex by recording the change in blood flow in the forehead of the subject while he was reading an unknown text.
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Affiliation(s)
- Saeed Samaei
- Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland
- Nalecz Institute of Biocybernetics and Biomedical Engineering, Polish Academy of Sciences, Ks. Trojdena 4, 02-109, Warsaw, Poland
| | - Klaudia Nowacka
- International Centre for Translational Eye Research, Skierniewicka 10A, 01-230 Warsaw, Poland
| | - Anna Gerega
- Nalecz Institute of Biocybernetics and Biomedical Engineering, Polish Academy of Sciences, Ks. Trojdena 4, 02-109, Warsaw, Poland
| | - Żanna Pastuszak
- Department of Neurosurgery, Mossakowski Medical Research Center Polish Academy of Sciences, Pawińskiego 5, 02-106 Warsaw, Poland
| | - Dawid Borycki
- Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland
- International Centre for Translational Eye Research, Skierniewicka 10A, 01-230 Warsaw, Poland
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7
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Intraoperative Optical and Fluorescence Imaging of Blood Flow Distributions in Mastectomy Skin Flaps for Identifying Ischemic Tissues. Plast Reconstr Surg 2022; 150:282-287. [PMID: 35653513 PMCID: PMC9334221 DOI: 10.1097/prs.0000000000009333] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Abstract
SUMMARY Insufficient blood flow causes mastectomy skin flap necrosis in 5 to 30 percent of cases. Fluorescence angiography with the injection of indocyanine green dye has shown high sensitivities (90 to 100 percent) but moderate specificities (72 to 50 percent) in predicting mastectomy skin flap necrosis. However, a number of challenging issues limit its wide acceptance in clinical settings, including allergic reaction, short time-window for observation, and high cost for equipment and supplies. An emerging inexpensive speckle contrast diffuse correlation tomography technology enables noninvasive, noncontact, and continuous three-dimensional imaging of blood flow distributions in deep tissues. This preliminary study tested the hypothesis that speckle contrast diffuse correlation tomography and indocyanine green-fluorescence angiography measurements of blood flow distributions in mastectomy skin flaps are consistent. Eleven female patients undergoing skin-sparing or nipple-sparing mastectomies were imaged sequentially by the dye-free speckle contrast diffuse correlation tomography and dye-based commercial fluorescence angiography (SPY-PHI). Resulting images from these two imaging modalities were co-registered based on the ischemic areas with the lowest blood flow values. Because the ischemic areas have irregular shapes, a novel contour-based algorithm was used to compare three-dimensional images of blood flow distribution and two-dimensional maps of indocyanine green perfusion. Significant correlations were observed between the two measurements in all contours from a selected area of 10 × 10 mm 2 with the lowest blood flow ( r ≥ 0.78; p < 0.004), suggesting that speckle contrast diffuse correlation tomography provides the information for identifying ischemic tissues in mastectomy skin flaps. With further optimization and validation in large populations, speckle contrast diffuse correlation tomography may ultimately be used as a noninvasive and inexpensive imaging tool for intraoperative assessment of skin flap viability to predict mastectomy skin flap necrosis. CLINICAL QUESTION/LEVEL OF EVIDENCE Diagnostic, II.
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8
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Fan W, Dehghani H, Eggebrecht AT. Investigation of effect of modulation frequency on high-density diffuse optical tomography image quality. NEUROPHOTONICS 2021; 8:045002. [PMID: 34849379 PMCID: PMC8612746 DOI: 10.1117/1.nph.8.4.045002] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/14/2021] [Accepted: 11/04/2021] [Indexed: 05/16/2023]
Abstract
Significance: By incorporating multiple overlapping functional near-infrared spectroscopy (fNIRS) measurements, high-density diffuse optical tomography (HD-DOT) images human brain function with fidelity comparable to functional magnetic resonance imaging (fMRI). Previous work has shown that frequency domain high-density diffuse optical tomography (FD-HD-DOT) may further improve image quality over more traditional continuous wave (CW) HD-DOT. Aim: The effects of modulation frequency on image quality as obtainable with FD-HD-DOT is investigated through simulations with a realistic noise model of functional activations in human head models, arising from 11 source modulation frequencies between CW and 1000 MHz. Approach: Simulations were performed using five representative head models with an HD regular grid of 158 light sources and 166 detectors and an empirically derived noise model. Functional reconstructions were quantitatively assessed with multiple image quality metrics including the localization error (LE), success rate, full width at half maximum, and full volume at half maximum (FVHM). All metrics were evaluated against CW-based models. Results: Compared to CW, localization accuracy is improved by >40% throughout brain depths of 13 to 25 mm below the surface with 300 to 500 MHz modulation frequencies. Additionally, the reliable field of view in brain tissue is enlarged by 35% to 48% within an optimal frequency of 300 MHz after considering realistic noise, depending on the dynamic range of the system. Conclusions: These results point to the tremendous opportunities in further development of high bandwidth FD-HD-DOT system hardware for applications in human brain mapping.
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Affiliation(s)
- Weihao Fan
- Washington University, Department of Physics, St. Louis, Missouri, United States
| | - Hamid Dehghani
- University of Birmingham, School of Computer Science, Birmingham, United Kingdom
| | - Adam T. Eggebrecht
- Washington University School of Medicine, Mallinckrodt Institute of Radiology, St. Louis, Missouri, United States
- Washington University, Department of Biomedical Engineering, St. Louis, Missouri, United States
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9
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Cortese L, Lo Presti G, Zanoletti M, Aranda G, Buttafava M, Contini D, Dalla Mora A, Dehghani H, Di Sieno L, de Fraguier S, Hanzu FA, Mora Porta M, Nguyen-Dinh A, Renna M, Rosinski B, Squarcia M, Tosi A, Weigel UM, Wojtkiewicz S, Durduran T. The LUCA device: a multi-modal platform combining diffuse optics and ultrasound imaging for thyroid cancer screening. BIOMEDICAL OPTICS EXPRESS 2021; 12:3392-3409. [PMID: 34221667 PMCID: PMC8221941 DOI: 10.1364/boe.416561] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/05/2021] [Revised: 05/07/2021] [Accepted: 05/07/2021] [Indexed: 05/07/2023]
Abstract
We present the LUCA device, a multi-modal platform combining eight-wavelength near infrared time resolved spectroscopy, sixteen-channel diffuse correlation spectroscopy and a clinical ultrasound in a single device. By simultaneously measuring the tissue hemodynamics and performing ultrasound imaging, this platform aims to tackle the low specificity and sensitivity of the current thyroid cancer diagnosis techniques, improving the screening of thyroid nodules. Here, we show a detailed description of the device, components and modules. Furthermore, we show the device tests performed through well established protocols for phantom validation, and the performance assessment for in vivo. The characterization tests demonstrate that LUCA device is capable of performing high quality measurements, with a precision in determining in vivo tissue optical and dynamic properties of better than 3%, and a reproducibility of better than 10% after ultrasound-guided probe repositioning, even with low photon count-rates, making it suitable for a wide variety of clinical applications.
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Affiliation(s)
- Lorenzo Cortese
- ICFO-Institut de Ciències Fotòniques, The Barcelona Institute of Science and Technology, 08860 Castelldefels (Barcelona), Spain
- These authors equally contributed to this work. Authors are listed in alphabetical order except for the first three and the last
| | - Giuseppe Lo Presti
- ICFO-Institut de Ciències Fotòniques, The Barcelona Institute of Science and Technology, 08860 Castelldefels (Barcelona), Spain
- These authors equally contributed to this work. Authors are listed in alphabetical order except for the first three and the last
| | - Marta Zanoletti
- Politecnico di Milano, Dipartimento di Fisica, 20133 Milano, Italy
| | - Gloria Aranda
- IDIBAPS, Fundació Clínic per la Recerca Biomèdica, Barcelona, Spain
| | - Mauro Buttafava
- Politecnico di Milano, Dipartimento di Elettronica Informazione e Bioingegneria, 20133 Milano, Italy
| | - Davide Contini
- Politecnico di Milano, Dipartimento di Fisica, 20133 Milano, Italy
| | | | - Hamid Dehghani
- University of Birmingham, School of Computer Science, Edgbaston, Birmingham, B15 2TT, UK
| | - Laura Di Sieno
- Politecnico di Milano, Dipartimento di Fisica, 20133 Milano, Italy
| | | | - Felicia A. Hanzu
- IDIBAPS, Fundació Clínic per la Recerca Biomèdica, Barcelona, Spain
- Endocrinology and Nutrition Department, Hospital Clínic of Barcelona, Barcelona, Spain
- Centro de Investigación Biomèdica en Red Diabetes y Enfermedades Metabólicas Asociadas (CIBERDEM), Spain
| | - Mireia Mora Porta
- IDIBAPS, Fundació Clínic per la Recerca Biomèdica, Barcelona, Spain
- Endocrinology and Nutrition Department, Hospital Clínic of Barcelona, Barcelona, Spain
- Centro de Investigación Biomèdica en Red Diabetes y Enfermedades Metabólicas Asociadas (CIBERDEM), Spain
| | | | - Marco Renna
- Politecnico di Milano, Dipartimento di Elettronica Informazione e Bioingegneria, 20133 Milano, Italy
- Athinoula A. Martinos Center for Biomedical Imaging, MGH, Harvard Medical School, Charlestown, MA 02129, USA
| | | | - Mattia Squarcia
- IDIBAPS, Fundació Clínic per la Recerca Biomèdica, Barcelona, Spain
- Neuroradiology Department, Hospital Clínic of Barcelona, Barcelona, Spain
| | - Alberto Tosi
- Politecnico di Milano, Dipartimento di Elettronica Informazione e Bioingegneria, 20133 Milano, Italy
| | - Udo M. Weigel
- HemoPhotonics S.L., 08860 Castelldefels (Barcelona), Spain
| | - Stanislaw Wojtkiewicz
- University of Birmingham, School of Computer Science, Edgbaston, Birmingham, B15 2TT, UK
| | - Turgut Durduran
- ICFO-Institut de Ciències Fotòniques, The Barcelona Institute of Science and Technology, 08860 Castelldefels (Barcelona), Spain
- Institució Catalana de Recerca i Estudis Avançats (ICREA), 08015 Barcelona, Spain
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Saikia MJ, Besio WG, Mankodiya K. The Validation of a Portable Functional NIRS System for Assessing Mental Workload. SENSORS 2021; 21:s21113810. [PMID: 34072895 PMCID: PMC8199260 DOI: 10.3390/s21113810] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/17/2021] [Revised: 05/23/2021] [Accepted: 05/25/2021] [Indexed: 11/16/2022]
Abstract
Portable functional near-infrared spectroscopy (fNIRS) systems have the potential to image the brain in naturalistic settings. Experimental studies are essential to validate such fNIRS systems. Working memory (WM) is a short-term active memory that is associated with the temporary storage and manipulation of information. The prefrontal cortex (PFC) brain area is involved in the processing of WM. We assessed the PFC brain during n-back WM tasks in a group of 25 college students using our laboratory-developed portable fNIRS system, WearLight. We designed an experimental protocol with 32 n-back WM task blocks with four different pseudo-randomized task difficulty levels. The hemodynamic response of the brain was computed from the experimental data and the evaluated brain responses due to these tasks. We observed the incremental mean hemodynamic activation induced by the increasing WM load. The left-PFC area was more activated in the WM task compared to the right-PFC. The task performance was seen to be related to the hemodynamic responses. The experimental results proved the functioning of the WearLight system in cognitive load imaging. Since the portable fNIRS system was wearable and operated wirelessly, it was possible to measure the cognitive load in the naturalistic environment, which could also lead to the development of a user-friendly brain–computer interface system.
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Affiliation(s)
- Manob Jyoti Saikia
- Department of Electrical, Computer and Biomedical Engineering, University of Rhode Island, Kingston, RI 02881, USA
| | - Walter G Besio
- Department of Electrical, Computer and Biomedical Engineering, University of Rhode Island, Kingston, RI 02881, USA
| | - Kunal Mankodiya
- Department of Electrical, Computer and Biomedical Engineering, University of Rhode Island, Kingston, RI 02881, USA
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Forbes SH, Wijeakumar S, Eggebrecht AT, Magnotta VA, Spencer JP. Processing pipeline for image reconstructed fNIRS analysis using both MRI templates and individual anatomy. NEUROPHOTONICS 2021; 8:025010. [PMID: 35106319 PMCID: PMC8786393 DOI: 10.1117/1.nph.8.2.025010] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/14/2021] [Accepted: 05/18/2021] [Indexed: 05/29/2023]
Abstract
Significance: Image reconstruction of fNIRS data is a useful technique for transforming channel-based fNIRS into a volumetric representation and managing spatial variance based on optode location. We present an innovative integrated pipeline for image reconstruction of fNIRS data using either MRI templates or individual anatomy. Aim: We demonstrate a pipeline with accompanying code to allow users to clean and prepare optode location information, prepare and standardize individual anatomical images, create the light model, run the 3D image reconstruction, and analyze data in group space. Approach: We synthesize a combination of new and existing software packages to create a complete pipeline, from raw data to analysis. Results: This pipeline has been tested using both templates and individual anatomy, and on data from different fNIRS data collection systems. We show high temporal correlations between channel-based and image-based fNIRS data. In addition, we demonstrate the reliability of this pipeline with a sample dataset that included 74 children as part of a longitudinal study taking place in Scotland. We demonstrate good correspondence between data in channel space and image reconstructed data. Conclusions: The pipeline presented here makes a unique contribution by integrating multiple tools to assemble a complete pipeline for image reconstruction in fNIRS. We highlight further issues that may be of interest to future software developers in the field.
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Affiliation(s)
- Samuel H. Forbes
- University of East Anglia, School of Psychology, Lawrence Stenhouse Building, Norwich, United Kingdom
| | | | - Adam T. Eggebrecht
- Washington University, Mallinckrodt Institute of Radiology, St Louis, Missouri, United States
| | | | - John P. Spencer
- University of East Anglia, School of Psychology, Lawrence Stenhouse Building, Norwich, United Kingdom
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12
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Hernandez-Martin E, Gonzalez-Mora JL. Diffuse optical tomography in the human brain: A briefly review from the neurophysiology to its applications. BRAIN SCIENCE ADVANCES 2021. [DOI: 10.26599/bsa.2020.9050014] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022] Open
Abstract
The present work describes the use of noninvasive diffuse optical tomography (DOT) technology to measure hemodynamic changes, providing relevant information which helps to understand the basis of neurophysiology in the human brain. Advantages such as portability, direct measurements of hemoglobin state, temporal resolution, non‐restricted movements as occurs in magnetic resonance imaging (MRI) devices mean that DOT technology can be used in research and clinical fields. In this review we covered the neurophysiology, physical principles underlying optical imaging during tissue‐light interactions, and technology commonly used during the construction of a DOT device including the source‐detector requirements to improve the image quality. DOT provides 3D cerebral activation images due to complex mathematical models which describe the light propagation inside the tissue head. Moreover, we describe briefly the use of Bayesian methods for raw DOT data filtering as an alternative to linear filters widely used in signal processing, avoiding common problems such as the filter selection or a false interpretation of the results which is sometimes due to the interference of background physiological noise with neural activity.
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Affiliation(s)
- Estefania Hernandez-Martin
- Department of Basic Medical Science, Faculty of Health Science, Medicine Section, Universidad de La Laguna, 38071, Spain
| | - José Luis Gonzalez-Mora
- Department of Basic Medical Science, Faculty of Health Science, Medicine Section, Universidad de La Laguna, 38071, Spain
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13
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Jiang J, Costanzo Mata AD, Lindner S, Charbon E, Wolf M, Kalyanov A. Dynamic time domain near-infrared optical tomography based on a SPAD camera. BIOMEDICAL OPTICS EXPRESS 2020; 11:5470-5477. [PMID: 33149964 PMCID: PMC7587269 DOI: 10.1364/boe.399387] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/30/2020] [Revised: 08/17/2020] [Accepted: 08/26/2020] [Indexed: 05/03/2023]
Abstract
In many clinical applications it is relevant to observe dynamic changes in oxygenation. Therefore the ability of dynamic imaging with time domain (TD) near-infrared optical tomography (NIROT) will be important. But fast imaging is a challenge. The data acquisition of our handheld TD NIROT system based on single photon avalanche diode (SPAD) camera and 11 light sources was consequently accelerated. We tested the system on a diffusive medium simulating tissue with a moving object embedded. With 3D image reconstruction, the moving object was correctly located using only 0.2 s exposure time per source.
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Affiliation(s)
- Jingjing Jiang
- Biomedical Optics Research Laboratory, University Hospital Zurich and University of Zurich, Switzerland
| | - Aldo Di Costanzo Mata
- Biomedical Optics Research Laboratory, University Hospital Zurich and University of Zurich, Switzerland
| | - Scott Lindner
- Biomedical Optics Research Laboratory, University Hospital Zurich and University of Zurich, Switzerland
- Advanced Quantum Architecture Laboratory, EPFL, 2002 Neuchâtel, Switzerland
- Now with ams AG, Ruschlikon, Switzerland
| | - Edoardo Charbon
- Advanced Quantum Architecture Laboratory, EPFL, 2002 Neuchâtel, Switzerland
| | - Martin Wolf
- Biomedical Optics Research Laboratory, University Hospital Zurich and University of Zurich, Switzerland
| | - Alexander Kalyanov
- Biomedical Optics Research Laboratory, University Hospital Zurich and University of Zurich, Switzerland
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14
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Improving Localization of Deep Inclusions in Time-Resolved Diffuse Optical Tomography. APPLIED SCIENCES-BASEL 2019. [DOI: 10.3390/app9245468] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
Time-resolved diffuse optical tomography is a technique used to recover the optical properties of an unknown diffusive medium by solving an ill-posed inverse problem. In time-domain, reconstructions based on datatypes are used for their computational efficiency. In practice, most used datatypes are temporal windows and Fourier transform. Nevertheless, neither theoretical nor numerical studies assessing different datatypes have been clearly expressed. In this paper, we propose an overview and a new process to compute efficiently a long set of temporal windows in order to perform diffuse optical tomography. We did a theoretical comparison of these large set of temporal windows. We also did simulations in a reflectance geometry with a spherical inclusion at different depths. The results are presented in terms of inclusion localization and its absorption coefficient recovery. We show that (1) the new windows computed with the developed method improve inclusion localization for inclusions at deep layers, (2) inclusion absorption quantification is improved at all depths and, (3) in some cases these windows can be equivalent to frequency based reconstruction at GHz order.
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15
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Daly MJ, Wilson BC, Irish JC, Jaffray DA. Navigated non-contact fluorescence tomography. ACTA ACUST UNITED AC 2019; 64:135021. [DOI: 10.1088/1361-6560/ab1f33] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
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16
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Doulgerakis M, Eggebrecht AT, Dehghani H. High-density functional diffuse optical tomography based on frequency-domain measurements improves image quality and spatial resolution. NEUROPHOTONICS 2019; 6:035007. [PMID: 31482102 PMCID: PMC6702521 DOI: 10.1117/1.nph.6.3.035007] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/09/2019] [Accepted: 07/30/2019] [Indexed: 05/18/2023]
Abstract
Measurements of dynamic near-infrared (NIR) light attenuation across the human head together with model-based image reconstruction algorithms allow the recovery of three-dimensional spatial brain activation maps. Previous studies using high-density diffuse optical tomography (HD-DOT) systems have reported improved image quality over sparse arrays. These HD-DOT systems incorporated multidistance overlapping continuous wave measurements that only recover differential intensity attenuation. We investigate the potential improvement in reconstructed image quality due to the additional incorporation of phase shift measurements, which reflect the time-of-flight of the measured NIR light, within the tomographic reconstruction from high-density measurements. To evaluate image reconstruction with and without the additional phase information, we simulated point spread functions across a whole-scalp field of view in 24 subject-specific anatomical models using an experimentally derived noise model. The addition of phase information improves the image quality by reducing localization error by up to 59% and effective resolution by up to 21% as compared to using the intensity attenuation measurements alone. Furthermore, we demonstrate that the phase data enable images to be resolved at deeper brain regions where intensity data fail, which is further supported by utilizing experimental data from a single subject measurement during a retinotopic experiment.
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Affiliation(s)
- Matthaios Doulgerakis
- University of Birmingham, School of Computer Science, Birmingham, England, United Kingdom
| | - Adam T. Eggebrecht
- Washington University School of Medicine, Mallinckrodt Institute of Radiology, St. Louis, Missouri, United States
| | - Hamid Dehghani
- University of Birmingham, School of Computer Science, Birmingham, England, United Kingdom
- Address all correspondence to Hamid Dehghani, E-mail:
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17
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Wheelock MD, Culver JP, Eggebrecht AT. High-density diffuse optical tomography for imaging human brain function. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2019; 90:051101. [PMID: 31153254 PMCID: PMC6533110 DOI: 10.1063/1.5086809] [Citation(s) in RCA: 64] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/23/2018] [Accepted: 04/14/2019] [Indexed: 05/08/2023]
Abstract
This review describes the unique opportunities and challenges for noninvasive optical mapping of human brain function. Diffuse optical methods offer safe, portable, and radiation free alternatives to traditional technologies like positron emission tomography or functional magnetic resonance imaging (fMRI). Recent developments in high-density diffuse optical tomography (HD-DOT) have demonstrated capabilities for mapping human cortical brain function over an extended field of view with image quality approaching that of fMRI. In this review, we cover fundamental principles of the diffusion of near infrared light in biological tissue. We discuss the challenges involved in the HD-DOT system design and implementation that must be overcome to acquire the signal-to-noise necessary to measure and locate brain function at the depth of the cortex. We discuss strategies for validation of the sensitivity, specificity, and reliability of HD-DOT acquired maps of cortical brain function. We then provide a brief overview of some clinical applications of HD-DOT. Though diffuse optical measurements of neurophysiology have existed for several decades, tremendous opportunity remains to advance optical imaging of brain function to address a crucial niche in basic and clinical neuroscience: that of bedside and minimally constrained high fidelity imaging of brain function.
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Affiliation(s)
- Muriah D. Wheelock
- Mallinckrodt Institute of Radiology, Washington University School of Medicine, St. Louis, Missouri 63110, USA
| | | | - Adam T. Eggebrecht
- Mallinckrodt Institute of Radiology, Washington University School of Medicine, St. Louis, Missouri 63110, USA
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18
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Lighter D, Hughes J, Styles I, Filer A, Dehghani H. Multispectral, non-contact diffuse optical tomography of healthy human finger joints. BIOMEDICAL OPTICS EXPRESS 2018; 9:1445-1460. [PMID: 29675294 PMCID: PMC5905898 DOI: 10.1364/boe.9.001445] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/05/2017] [Revised: 01/26/2018] [Accepted: 02/01/2018] [Indexed: 05/21/2023]
Abstract
Rheumatoid arthritis (RA) is an inflammatory joint disease often affecting the hands, which if untreated causes disability. Diffuse optical tomography (DOT) provides information about the underlying functional properties of biological tissue. To detect pathophysiological changes in inflamed RA joints, a good understanding of the baseline values for healthy subjects is first required. Finger joints from healthy subjects were imaged using a non-contact, multispectral, continuous wave DOT system, recovering physiological parameters of oxygen saturation, total haemoglobin, water concentration and scatter amplitude. Reconstructed values across the cohort demonstrated good consistency between finger joints from the same participant, with greater variation seen between subjects.
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Affiliation(s)
- Daniel Lighter
- Sci-Phy-4-Health Centre for Doctoral Training, University of Birmingham, Edgbaston, Birmingham, B15 2TT,
UK
| | - James Hughes
- Sci-Phy-4-Health Centre for Doctoral Training, University of Birmingham, Edgbaston, Birmingham, B15 2TT,
UK
| | - Iain Styles
- School of Computer Science, University of Birmingham, Edgbaston, Birmingham, B15 2TT,
UK
| | - Andrew Filer
- Rheumatology, Institute of Inflammation and Ageing, College of Medical and Dental Sciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT,
UK
| | - Hamid Dehghani
- School of Computer Science, University of Birmingham, Edgbaston, Birmingham, B15 2TT,
UK
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