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Collin SP, Yopak KE, Crowe-Riddell JM, Camilieri-Asch V, Kerr CC, Robins H, Ha MH, Ceddia A, Dutka TL, Chapuis L. Bioimaging of sense organs and the central nervous system in extant fishes and reptiles in situ: A review. Anat Rec (Hoboken) 2024. [PMID: 39223842 DOI: 10.1002/ar.25566] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2024] [Revised: 08/03/2024] [Accepted: 08/07/2024] [Indexed: 09/04/2024]
Abstract
Bioimaging is changing the field of sensory biology, especially for taxa that are lesser-known, rare, and logistically difficult to source. When integrated with traditional neurobiological approaches, developing an archival, digital repository of morphological images can offer the opportunity to improve our understanding of whole neural systems without the issues of surgical intervention and negate the risk of damage and artefactual interpretation. This review focuses on current approaches to bioimaging the peripheral (sense organs) and central (brain) nervous systems in extant fishes (cartilaginous and bony) and non-avian reptiles in situ. Magnetic resonance imaging (MRI), micro-computed tomography (μCT), both super-resolution track density imaging and diffusion tensor-based imaging, and a range of other new technological advances are presented, together with novel approaches in optimizing both contrast and resolution, for developing detailed neuroanatomical atlases and enhancing comparative analyses of museum specimens. For MRI, tissue preparation, including choice of fixative, impacts tissue MR responses, where both resolving power and signal-to-noise ratio improve as field strength increases. Time in fixative, concentration of contrast agent, and duration of immersion in the contrast agent can also significantly affect relaxation times, and thus image quality. For μCT, the use of contrast-enhancing stains (iodine-, non-iodine-, or nanoparticle-based) is critical, where the type of fixative used, and the concentration of stain and duration of staining time often require species-specific optimization. Advanced reconstruction algorithms to reduce noise and artifacts and post-processing techniques, such as deconvolution and filtering, are now being used to improve image quality and resolution.
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Affiliation(s)
- Shaun P Collin
- School of Agriculture, Biomedicine and Environment, La Trobe University, Bundoora, Victoria, Australia
| | - Kara E Yopak
- Department of Biology and Marine Biology, University of North Carolina Wilmington, Wilmington, North Carolina, USA
| | - Jenna M Crowe-Riddell
- School of Agriculture, Biomedicine and Environment, La Trobe University, Bundoora, Victoria, Australia
- School of Biological Sciences, The University of Adelaide, Adelaide, South Australia, Australia
| | - Victoria Camilieri-Asch
- Max Planck Queensland Centre for the Materials Science of Extracellular Matrices, Queensland University of Technology, Kelvin Grove, Queensland, Australia
| | - Caroline C Kerr
- School of Agriculture, Biomedicine and Environment, La Trobe University, Bundoora, Victoria, Australia
| | - Hope Robins
- School of Agriculture, Biomedicine and Environment, La Trobe University, Bundoora, Victoria, Australia
| | - Myoung Hoon Ha
- School of Agriculture, Biomedicine and Environment, La Trobe University, Bundoora, Victoria, Australia
| | - Annalise Ceddia
- School of Agriculture, Biomedicine and Environment, La Trobe University, Bundoora, Victoria, Australia
| | - Travis L Dutka
- School of Agriculture, Biomedicine and Environment, La Trobe University, Bundoora, Victoria, Australia
| | - Lucille Chapuis
- School of Agriculture, Biomedicine and Environment, La Trobe University, Bundoora, Victoria, Australia
- School of Biological Sciences, University of Bristol, Bristol, UK
- Leigh Marine Laboratory, Institute of Marine Science, University of Auckland, Leigh, New Zealand
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Popper AN, Amorim C, Fine ML, Higgs DM, Mensinger AF, Sisneros JA. Introduction to the special issue on fish bioacoustics: Hearing and sound communicationa). THE JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA 2024; 155:2385-2391. [PMID: 38563625 DOI: 10.1121/10.0025553] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/18/2024] [Accepted: 03/25/2024] [Indexed: 04/04/2024]
Abstract
Fish bioacoustics, or the study of fish hearing, sound production, and acoustic communication, was discussed as early as Aristotle. However, questions about how fishes hear were not really addressed until the early 20th century. Work on fish bioacoustics grew after World War II and considerably in the 21st century since investigators, regulators, and others realized that anthropogenic (human-generated sounds), which had primarily been of interest to workers on marine mammals, was likely to have a major impact on fishes (as well as on aquatic invertebrates). Moreover, passive acoustic monitoring of fishes, recording fish sounds in the field, has blossomed as a noninvasive technique for sampling abundance, distribution, and reproduction of various sonic fishes. The field is vital since fishes and aquatic invertebrates make up a major portion of the protein eaten by a signification portion of humans. To help better understand fish bioacoustics and engage it with issues of anthropogenic sound, this special issue of The Journal of the Acoustical Society of America (JASA) brings together papers that explore the breadth of the topic, from a historical perspective to the latest findings on the impact of anthropogenic sounds on fishes.
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Affiliation(s)
- Arthur N Popper
- Department of Biology, University of Maryland, College Park, Maryland 20742, USA
- Environmental BioAcoustics LLC, Silver Spring, Maryland 20906, USA
| | - Clara Amorim
- Departamento de Biologia Animal, Faculdade de Ciências, Universidade de Lisboa, Lisboa, Portugal
- MARE-Marine and Environmental Sciences Centre, Universidade de Lisboa, Lisboa, Portugal
| | - Michael L Fine
- Department of Biology, Virginia Commonwealth University, Richmond, Virginia 23284, USA
| | - Dennis M Higgs
- Department of Integrative Biology, University of Windsor, Windsor, Ontario, N9B 3P4, Canada
| | - Allen F Mensinger
- Biology Department, University of Minnesota Duluth, Duluth, Minnesota 55812, USA
| | - Joseph A Sisneros
- Department of Psychology, University of Washington, Seattle, Washington 98195, USA
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Marcé-Nogué J, Liu J. Finite element modelling of sound transmission in the Weberian apparatus of zebrafish ( Danio rerio). J R Soc Interface 2024; 21:20230553. [PMID: 38196376 PMCID: PMC10777150 DOI: 10.1098/rsif.2023.0553] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2023] [Accepted: 12/07/2023] [Indexed: 01/11/2024] Open
Abstract
Zebrafish, an essential vertebrate model, has greatly expanded our understanding of hearing. However, one area that remains unexplored is the biomechanics of the Weberian apparatus, crucial for sound conduction and perception. Using micro-computed tomography (μCT) bioimaging, we created three-dimensional finite element models of the zebrafish Weberian ossicles. These models ranged from the exact size to scaled isometric versions with constrained geometry (1 to 10 mm in ossicular chain length). Harmonic finite element analysis of all 11 models revealed that the resonance frequency of the zebrafish's Weberian ossicular chain is approximately 900 Hz, matching their optimal hearing range. Interestingly, resonance frequency negatively correlated with size, while the ratio of peak displacement and difference of resonance frequency between tripus and scaphium remained constant. This suggests the transmission efficiency of the ossicular chain and the homogeneity of resonance frequency at both ends of the chain are not size-dependent. We conclude that the Weberian apparatus's resonance frequency can explain zebrafish's best hearing frequency, and their biomechanical characteristics are not influenced by isometric ontogeny. As the first biomechanical modelling of atympanic ear and among the few non-human ear modelling, this study provides a methodological framework for further investigations into hearing mechanisms and the hearing evolution of vertebrates.
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Affiliation(s)
- Jordi Marcé-Nogué
- Department of Mechanical Engineering, Universitat Rovira i Virgili Tarragona, 43007 Tarragona, Catalonia, Spain
- Institut Català de Paleontologia, Universitat Autònoma de Barcelona, 08193 Cerdanyola del Vallès, Catalonia, Spain
| | - Juan Liu
- Department of Integrative Biology, University of California, Berkeley, Berkeley, CA 94720, USA
- University of California Museum of Paleontology, University of California, Berkeley, Berkeley, CA 94720, USA
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