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Kimura Y, Mashiyama Y, Maruyama H, Fujimori A. Extension of "Interfacial Adsorption Denaturation" Behavior Interpretation Based on Gibbs Monolayer Formation by Biomolecules. J Oleo Sci 2021; 70:349-362. [PMID: 33658466 DOI: 10.5650/jos.ess20222] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Using glucose oxidase and salmon testis-derived DNA molecules, we sought to extend the recently proposed idea of interfacial adsorption denaturation. The surface pressure-time (π-t) isotherm of the glucose oxidase Gibbs monolayer exhibited a rapid increase in surface pressure and a relatively prompt transition to a liquid condensed film. The appearance of this rapid liquid expansion phase occurred much earlier than that previously identified for lysozyme, trypsin, cytochrome C, and luciferase. This experimental finding was linked to the number of hydrophobic residues in the constituent unit, and the number of hydrophobic residues in glucose oxidase was the highest among these biomolecules. On the other hand, DNA molecules do not have such hydrophobic groups, or present a positive surface on the π-t curve. However, interfacial adsorption occurred, and the existence of molecules at the air/water interface was confirmed, even in the two-dimensional gas phase state. Furthermore, it was confirmed that an increase in surface pressure was detected during the formation of a mixed film of DNA molecules and biomolecules, forming a stable Gibbs monolayer. This mimic the behavior of mixed monolayer formation with matrix molecules in Langmuir monolayers. Moreover, it was clarified that the interfacial adsorption denaturation behavior changed when pH dependence was evaluated considering the isoelectric point of the biomolecular group.
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Affiliation(s)
- Yusuke Kimura
- Graduate School of Science and Engineering, Saitama University
| | | | - Haruka Maruyama
- Graduate School of Science and Engineering, Saitama University
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2
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McCluskey AR, Sanchez-Fernandez A, Edler KJ, Parker SC, Jackson AJ, Campbell RA, Arnold T. Bayesian determination of the effect of a deep eutectic solvent on the structure of lipid monolayers. Phys Chem Chem Phys 2019; 21:6133-6141. [DOI: 10.1039/c9cp00203k] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Abstract
A novel reflectometry analysis method reveals the structure of lipid monolayers at the air-DES interface.
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Affiliation(s)
| | | | | | | | - Andrew J. Jackson
- European Spallation Source
- SE-211 00 Lund
- Sweden
- Department of Physical Chemistry
- Lund University
| | - Richard A. Campbell
- Division of Pharmacy and Optometry
- University of Manchester
- Manchester
- UK
- Institut Laue-Langevin
| | - Thomas Arnold
- Department of Chemistry
- University of Bath
- Bath
- UK
- Diamond Light Source
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3
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Qin X, Luo D, Xue Z, Song Q, Wang T. Self-Assembled Ag-MXA Superclusters with Structure-Dependent Mechanical Properties. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2018; 30. [PMID: 29334146 DOI: 10.1002/adma.201706327] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/31/2017] [Revised: 11/27/2017] [Indexed: 06/07/2023]
Abstract
The low elastic modulus and time-consuming formation process represent the major challenges that impede the penetration of nanoparticle superstructures into daily life applications. As observed in the molecular or atomic crystals, more effective interactions between adjacent nanoparticles would introduce beneficial features to assemblies enabling optimized mechanical properties. Here, a straightforward synthetic strategy is showed that allows fast and scalable fabrication of 2D Ag-mercaptoalkyl acid superclusters of either hexagonal or lamellar topology. Remarkably, these ordered superstructures exhibit a structure-dependent elastic modulus which is subject to the tether length of straight-chain mercaptoalkyl acids or the ratio between silver and tether molecules. These superclusters are plastic and moldable against arbitrarily shaped masters of macroscopic dimensions, thereby opening a wealth of possibilities to develop more nanocrystals with practically useful nanoscopic properties.
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Affiliation(s)
- Xiaoyun Qin
- Beijing National Laboratory for Molecular Sciences, Key Laboratory of Analytical Chemistry for Living Biosystems, Institute of Chemistry, The Chinese Academy of Sciences, Beijing, 100190, P. R. China
- University of Chinese Academy of Sciences, Beijing, 100049, P. R. China
| | - Dan Luo
- Beijing National Laboratory for Molecular Sciences, Key Laboratory of Analytical Chemistry for Living Biosystems, Institute of Chemistry, The Chinese Academy of Sciences, Beijing, 100190, P. R. China
- University of Chinese Academy of Sciences, Beijing, 100049, P. R. China
- State Key Laboratory of Heavy Oil Processing, Institute of New Energy, China University of Petroleum (Beijing), Beijing, 102249, P. R. China
| | - Zhenjie Xue
- Beijing National Laboratory for Molecular Sciences, Key Laboratory of Analytical Chemistry for Living Biosystems, Institute of Chemistry, The Chinese Academy of Sciences, Beijing, 100190, P. R. China
- University of Chinese Academy of Sciences, Beijing, 100049, P. R. China
| | - Qian Song
- Beijing National Laboratory for Molecular Sciences, Key Laboratory of Analytical Chemistry for Living Biosystems, Institute of Chemistry, The Chinese Academy of Sciences, Beijing, 100190, P. R. China
- University of Chinese Academy of Sciences, Beijing, 100049, P. R. China
| | - Tie Wang
- Beijing National Laboratory for Molecular Sciences, Key Laboratory of Analytical Chemistry for Living Biosystems, Institute of Chemistry, The Chinese Academy of Sciences, Beijing, 100190, P. R. China
- University of Chinese Academy of Sciences, Beijing, 100049, P. R. China
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4
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Dipolar colloids in apolar media: direct microscopy of two-dimensional suspensions. Sci Rep 2016; 6:28578. [PMID: 27346611 PMCID: PMC4921927 DOI: 10.1038/srep28578] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2016] [Accepted: 06/06/2016] [Indexed: 02/07/2023] Open
Abstract
Spherical colloids, in an absence of external fields, are commonly assumed to interact solely through rotationally-invariant potentials, u(r). While the presence of permanent dipoles in aqueous suspensions has been previously suggested by some experiments, the rotational degrees of freedom of spherical colloids are typically neglected. We prove, by direct experiments, the presence of permanent dipoles in commonly used spherical poly(methyl methacrylate) (PMMA) colloids, suspended in an apolar organic medium. We study, by a combination of direct confocal microscopy, computer simulations, and theory, the structure and other thermodynamical properties of organic suspensions of colloidal spheres, confined to a two-dimensional (2D) monolayer. Our studies reveal the effects of the dipolar interactions on the structure and the osmotic pressure of these fluids. These observations have far-reaching consequences for the fundamental colloidal science, opening new directions in self-assembly of complex colloidal clusters.
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Tuca E, Paci I. Fundamental aspects in surface self-assembly: theoretical implications of molecular polarity and shape. Phys Chem Chem Phys 2016; 18:6498-508. [PMID: 26864632 DOI: 10.1039/c5cp04479k] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
We investigate fundamental aspects of structure formation in molecular self-assembly, by examining the emergence of order upon adsorption of a series of model molecules. It is known that strongly polar diatomic molecules form three-dimensional crystals in the absence of a substrate. This tendency can be disrupted upon assembly on a solid surface, and various other types of order may arise. Depending on the relative strength of the interactions, disordered phases, two-dimensional crystals commensurate to the surface, and unmodified crystals were observed upon adsorption of simple dipoles in the present work. Introduction of steric features, in the form of a longer backbone or substituents external to the polar pair, led to even richer phase diagrams. The formation of two-dimensional phases with nematic (parallel) or antiparallel alignment was accomplished by altering the polarity of the end groups on needle-like molecules, whereas embedded charged groups made two-dimensional structure unstable for even very long molecules. These molecules preferred to align in long, often desorbed, molecular wires. The wealth of phases observed here parallel the results of experimental systematic or incidental studies of the relationships between molecular interactions and self-assembled patterns, and provide some insight into the molecular handles that self-assembly researchers can wield to guide the process towards a desired structural outcome.
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Affiliation(s)
- Emilian Tuca
- Department of Chemistry and the Centre for Advanced Materials and Related Technology, University of Victoria, Victoria, BC V8W 3V6, Canada.
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6
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Murphy BM, Greve M, Runge B, Koops CT, Elsen A, Stettner J, Seeck OH, Magnussen OM. A novel X-ray diffractometer for studies of liquid-liquid interfaces. JOURNAL OF SYNCHROTRON RADIATION 2014; 21:45-56. [PMID: 24365915 DOI: 10.1107/s1600577513026192] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/27/2013] [Accepted: 09/22/2013] [Indexed: 06/03/2023]
Abstract
The study of liquid-liquid interfaces with X-ray scattering methods requires special instrumental considerations. A dedicated liquid surface diffractometer employing a tilting double-crystal monochromator in Bragg geometry has been designed. This diffractometer allows reflectivity and grazing-incidence scattering measurements of an immobile mechanically completely decoupled liquid sample, providing high mechanical stability. The available energy range is from 6.4 to 29.4 keV, covering many important absorption edges. The instrument provides access in momentum space out to 2.54 Å(-1) in the surface normal and out to 14.8 Å(-1) in the in-plane direction at 29.4 keV. Owing to its modular design the diffractometer is also suitable for heavy apparatus such as vacuum chambers. The instrument performance is described and examples of X-ray reflectivity studies performed under in situ electrochemical control and on biochemical model systems are given.
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Affiliation(s)
- Bridget M Murphy
- Institute for Experimental and Applied Physics, University of Kiel, D-24098 Kiel, Germany
| | - Matthais Greve
- Institute for Experimental and Applied Physics, University of Kiel, D-24098 Kiel, Germany
| | - Benjamin Runge
- Institute for Experimental and Applied Physics, University of Kiel, D-24098 Kiel, Germany
| | - Christian T Koops
- Institute for Experimental and Applied Physics, University of Kiel, D-24098 Kiel, Germany
| | - Annika Elsen
- Institute for Experimental and Applied Physics, University of Kiel, D-24098 Kiel, Germany
| | - Jochim Stettner
- Institute for Experimental and Applied Physics, University of Kiel, D-24098 Kiel, Germany
| | - Oliver H Seeck
- Deutsches Elektronen-Synchrotron DESY, Notkestrasse 85, D-22603 Hamburg, Germany
| | - Olaf M Magnussen
- Institute for Experimental and Applied Physics, University of Kiel, D-24098 Kiel, Germany
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7
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Tamam L, Ocko BM, Deutsch M. Two-dimensional order in mercury-supported langmuir films of fatty diacids. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2012; 28:15586-15597. [PMID: 23072520 DOI: 10.1021/la3034325] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
The structure of mercury-supported Langmuir films of dicarboxylic acid molecules with 13 ≤ n ≤ 22 carbons is studied by X-ray methods and surface tensiometry. The molecules lie surface-parallel, forming mono-, bi-, or trilayers, depending on coverage. All films exhibit a full 2D order of the same single-molecule oblique unit cell. In particular, the distinct odd-even structure difference of 3D crystals of the same molecules is not observed. The unit cell's width and angle show a small systematic decrease with n, while the length increases commensurately with the molecular length. These results show the films to consist of closely packed, extended, polymer-like chains of diacid molecules, bound by their carboxyl end groups. Evidence is presented for the inclusion of a single mercury atom in the carboxyl-carboxyl bond. The possible conformation of this bond and implications of the parity-independent structure are discussed.
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Affiliation(s)
- Lilach Tamam
- Physics Department, Bar-Ilan University, Ramat-Gan, Israel
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8
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Gainanova GA, Vagapova GI, Syakaev VV, Ibragimova AR, Valeeva FG, Tudriy EV, Galkina IV, Kataeva ON, Zakharova LY, Latypov SK, Konovalov AI. Self-assembling systems based on amphiphilic alkyltriphenylphosphonium bromides: elucidation of the role of head group. J Colloid Interface Sci 2011; 367:327-36. [PMID: 22134214 DOI: 10.1016/j.jcis.2011.10.074] [Citation(s) in RCA: 57] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2011] [Revised: 10/30/2011] [Accepted: 10/31/2011] [Indexed: 11/28/2022]
Abstract
A systematic study of the aggregation behavior of alkyltriphenylphosphonium bromides (TPPB-n; n=8, 10, 12, 14, 16, 18; here n is the number of carbon atoms in alkyl groups) in aqueous solutions has been carried out and compared with trimethyl ammonium bromides (TMAB-n). Critical micelle concentrations (cmcs) of TPPB-n and TMAB-n decrease with the number of carbon atoms with the slope parameter of ca.0.3. The low cmcs and effective solubilization power toward Orange OT indicate high micellization capacity of phosphonium surfactants. The low counterion binding parameter β is revealed for TPPB-10 and TPPB-12, while high counterion binding of ≥80% is observed for high TPPB-n homologs. Values of the surface potential ψ calculated on the basis of pK(a) shifts of p-nitrophenols is similar for both series and monotonously increase with alkyl chain length. Several points indicate non-monotonic changes within TPPB-n series. There are peculiarities of the tensiometry and solubilization plots for high homologs and above mentioned increases in counterion binding on transiting from low to high molecular weight surfactants. Differences in aggregation behavior between TPPB and TMAB series and between low and high homologs can be due to the specific structural character of the TPP(+) cation, which is supported by X-ray data.
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Affiliation(s)
- Gulnara A Gainanova
- A.E. Arbuzov Institute of Organic and Physical Chemistry of the Russian Academy of Sciences, 8, ul. Akad. Arbuzov, Kazan 420088, Russia
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9
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Tamam L, Ocko BM, Reichert H, Deutsch M. Checkerboard self-patterning of an ionic liquid film on mercury. PHYSICAL REVIEW LETTERS 2011; 106:197801. [PMID: 21668201 DOI: 10.1103/physrevlett.106.197801] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/24/2011] [Indexed: 05/30/2023]
Abstract
Å-resolution studies of room temperature ionic liquid (RTIL) interfaces are scarce, in spite of their long-recognized importance for the science and many applications of RTILs. We present an Å-resolution x-ray study of a Langmuir film of an RTIL on mercury. At low (high) coverage [90 (50) Å2/molecule] a mono-(bi)layer of surface-parallel molecules is found. The molecules self-assemble in a lateral ionic checkerboard pattern, unlike the uniform-charge, alternate-ion layers of this RTIL at its bulk-solid interface. A 2D-smectic order is found, with molecules packed in parallel stripes, forming long-range order normal to, but none along, the stripes.
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Affiliation(s)
- L Tamam
- Physics Department & Institute of Nanotechnology, Bar-Ilan University, Ramat-Gan 52900, Israel
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10
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Armas-Pérez JC, Quintana-H J. Numerical evidence for nematic and smectic behavior of two-dimensional hard models. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2011; 83:051709. [PMID: 21728558 DOI: 10.1103/physreve.83.051709] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/22/2010] [Revised: 03/09/2011] [Indexed: 05/31/2023]
Abstract
The mesophases of two infinitely hard models with chiral and anisotropic characteristics in two dimensions are studied. Evidence for nematic and smectic behavior is provided via Monte Carlo simulations using restrictive values of the molecular parameters. Both models are geometrically chiral; one has polar structure. The concept of smectic phase considered in this work requires translational disorder in one direction and signs of translational order in the perpendicular one. The models presented in this paper show these characteristics. The isotropic-nematic phase transition satisfies the features of the Kosterlitz Thouless type. The smectic phase shows signs of quasi-long-range order.
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Affiliation(s)
- Julio C Armas-Pérez
- Instituto de Química, Universidad Nacional Autónoma de México, México DF, México
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11
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Cyclic reciprocal derivative chronopotentiometric behavior of electrode process in the presence of adsorptive reactants: A theoretical study of the electrolysis sequence of adsorptive and diffusing electroactive reactants. Electrochim Acta 2010. [DOI: 10.1016/j.electacta.2010.08.009] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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12
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13
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Chwastiak S. Calculation of contact angles from surfactant adsorption isotherms. J Colloid Interface Sci 2009; 339:196-201. [DOI: 10.1016/j.jcis.2009.06.063] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2009] [Revised: 06/26/2009] [Accepted: 06/29/2009] [Indexed: 11/29/2022]
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14
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Tamam L, Menahem T, Mastai Y, Sloutskin E, Yefet S, Deutsch M. Langmuir films of chiral molecules on mercury. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2009; 25:5111-5119. [PMID: 19256463 DOI: 10.1021/la804109h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
Homo- and heterochiral Langmuir films of a chiral derivative of stearic acid are studied in situ on the surface of liquid mercury as a function of surface coverage by surface tensiometry and surface-specific synchrotron X-ray diffraction and reflectivity. A transition from a phase of surface-parallel molecules to a phase of standing-up molecules is found. The former shows no surface-parallel long-range order. The standing-up phase of both homochiral and heterochiral compositions exhibit long-range order. However, the former has an oblique unit cell with parallel molecular planes, and the later has a centered rectangular unit cell with a herringbone molecular packing. For both cases, the standing-up molecules are tilted by 44 degrees from the surface normal and pack at a density of 19.5 A(2)/molecule in the plane normal to the molecular long axis. Important differences are found, and discussed, between this behavior and that of a Langmuir film of the nonchiral stearic acid on mercury.
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Affiliation(s)
- L Tamam
- Physics Department, Bar-Ilan University, Ramat-Gan 52900, Israel
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15
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Zakharova LY, Mustafina AR, Valeeva FG, Ibragimova AR, Ablakova YR, Elistratova YG, Syakaev VV, Kudryavtseva LA, Konovalov AI. Supramolecular catalytic systems based on calix[4]resorcinarene for nucleophilic substitution in phosphorous acid esters. COLLOID JOURNAL 2008. [DOI: 10.1134/s1061933x08040078] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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16
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Jiang L, Wang K, Deng M, Wang Y, Huang J. Bile salt-induced vesicle-to-micelle transition in catanionic surfactant systems: steric and electrostatic interactions. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2008; 24:4600-4606. [PMID: 18345695 DOI: 10.1021/la7035554] [Citation(s) in RCA: 61] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
The vesicle-to-micelle transition (VMT) was realized in catanionic surfactant systems by the addition of two kinds of bile salts, sodium cholate (SC) and sodium deoxycholate (SDC). It was found that steric interaction between the bile salt and catanionic surfactant plays an important role in catanionic surfactant systems that are usually thought to be dominated by electrostatic interaction. The facial amphiphilic structure and large occupied area of the bile salt are crucial to the enlargement of the average surfactant headgroup area and result in the VMT. Moreover, bile salts can also induce a macroscopic phase transition. Freeze-fracture transmission electron microscopy, dynamic light scattering, isothermal titration calorimetry, and absorbance measurements were used to follow the VMT process.
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Affiliation(s)
- Lingxiang Jiang
- Beijing National Laboratory for Molecular Sciences, State Key Laboratory for Structural Chemistry of Unstable and Stable Species, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, PR China
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17
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Zakharova LY, Semenov VE, Voronin MA, Valeeva FG, Ibragimova AR, Giniatullin RK, Chernova AV, Kharlamov SV, Kudryavtseva LA, Latypov SK, Reznik VS, Konovalov AI. Nanoreactors Based on Amphiphilic Uracilophanes: Self-Organization and Reactivity Study. J Phys Chem B 2007; 111:14152-62. [DOI: 10.1021/jp076592q] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Lucia Ya. Zakharova
- A. E. Arbuzov Institute of Organic and Physical Chemistry of the Russian Academy of Sciences, 8 ul. Akad. Arbuzov, Kazan 420088, and Kazan State Technological University, 68 ul. K. Marx, Kazan 420015, Russia
| | - Vyacheslav E. Semenov
- A. E. Arbuzov Institute of Organic and Physical Chemistry of the Russian Academy of Sciences, 8 ul. Akad. Arbuzov, Kazan 420088, and Kazan State Technological University, 68 ul. K. Marx, Kazan 420015, Russia
| | - Mikhail A. Voronin
- A. E. Arbuzov Institute of Organic and Physical Chemistry of the Russian Academy of Sciences, 8 ul. Akad. Arbuzov, Kazan 420088, and Kazan State Technological University, 68 ul. K. Marx, Kazan 420015, Russia
| | - Farida G. Valeeva
- A. E. Arbuzov Institute of Organic and Physical Chemistry of the Russian Academy of Sciences, 8 ul. Akad. Arbuzov, Kazan 420088, and Kazan State Technological University, 68 ul. K. Marx, Kazan 420015, Russia
| | - Alsu R. Ibragimova
- A. E. Arbuzov Institute of Organic and Physical Chemistry of the Russian Academy of Sciences, 8 ul. Akad. Arbuzov, Kazan 420088, and Kazan State Technological University, 68 ul. K. Marx, Kazan 420015, Russia
| | - Rashid Kh. Giniatullin
- A. E. Arbuzov Institute of Organic and Physical Chemistry of the Russian Academy of Sciences, 8 ul. Akad. Arbuzov, Kazan 420088, and Kazan State Technological University, 68 ul. K. Marx, Kazan 420015, Russia
| | - Alla V. Chernova
- A. E. Arbuzov Institute of Organic and Physical Chemistry of the Russian Academy of Sciences, 8 ul. Akad. Arbuzov, Kazan 420088, and Kazan State Technological University, 68 ul. K. Marx, Kazan 420015, Russia
| | - Sergey V. Kharlamov
- A. E. Arbuzov Institute of Organic and Physical Chemistry of the Russian Academy of Sciences, 8 ul. Akad. Arbuzov, Kazan 420088, and Kazan State Technological University, 68 ul. K. Marx, Kazan 420015, Russia
| | - Lyudmila A. Kudryavtseva
- A. E. Arbuzov Institute of Organic and Physical Chemistry of the Russian Academy of Sciences, 8 ul. Akad. Arbuzov, Kazan 420088, and Kazan State Technological University, 68 ul. K. Marx, Kazan 420015, Russia
| | - Shamil K. Latypov
- A. E. Arbuzov Institute of Organic and Physical Chemistry of the Russian Academy of Sciences, 8 ul. Akad. Arbuzov, Kazan 420088, and Kazan State Technological University, 68 ul. K. Marx, Kazan 420015, Russia
| | - Vladimir S. Reznik
- A. E. Arbuzov Institute of Organic and Physical Chemistry of the Russian Academy of Sciences, 8 ul. Akad. Arbuzov, Kazan 420088, and Kazan State Technological University, 68 ul. K. Marx, Kazan 420015, Russia
| | - Alexander I. Konovalov
- A. E. Arbuzov Institute of Organic and Physical Chemistry of the Russian Academy of Sciences, 8 ul. Akad. Arbuzov, Kazan 420088, and Kazan State Technological University, 68 ul. K. Marx, Kazan 420015, Russia
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18
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McGuiness CL, Blasini D, Masejewski JP, Uppili S, Cabarcos OM, Smilgies D, Allara DL. Molecular self-assembly at bare semiconductor surfaces: characterization of a homologous series of n-alkanethiolate monolayers on GaAs(001). ACS NANO 2007; 1:30-49. [PMID: 19203128 DOI: 10.1021/nn7000596] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
Structural trends for a homologous series of n-alkanethiolate self-assembled monolayers (SAMs), C(n)H(2n+1)S- with 12 < or = n < or = 19, on GaAs(001), studied by a combination of grazing incidence X-ray diffraction and infrared spectroscopy, along with ancillary probes, show an overall decay in organization with decreasing n, with the largest changes occurring below n = 15-16. The long-chain monolayers form a mosaic structure with < or =10 nm domains of molecules organized in an incommensurate pseudo-hcp arrangement with nearest neighbor distances of 4.70 and 5.02 A, a 21.2 A(2) area per chain, two chains per subcell in a herringbone packing with a chain tilt angle of 14 degrees , and preferential domain alignment along the substrate [110]([110]) step edge direction. In contrast, for n < 14 no evidence of translational ordering is seen and the alkyl chains exhibit a loss of conformational ordering and coverage relative to the n > 16 cases. A 4'-methyl-biphenyl-4-thiolate companion SAM shows evidence for ordered structures but with lattice parameters close to those expected for a structure commensurate with the intrinsic GaAs(001) square lattice. These trends are explained on the basis of competitions between lattice, interfacial, and intermolecular forces controlling the nanoscale structures of the SAMs. Overall these results provide an important aspect of understanding the effects of SAM formation on surface properties such as electronic and chemical passivation.
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Affiliation(s)
- Christine L McGuiness
- Department of Chemistry, The Pennsylvania State University, 104 Chemistry Building, University Park, Pennsylvania 16801-6300, USA
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19
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Sellers H. Modeling the kinetics of large sets of reactions on metal surfaces. RUSSIAN JOURNAL OF PHYSICAL CHEMISTRY B 2007. [DOI: 10.1134/s1990793107040070] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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20
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Kraack H, Tamam L, Sloutskin E, Deutsch M, Ocko BM. Alkyl-thiol Langmuir films on the surface of liquid mercury. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2007; 23:7571-82. [PMID: 17539663 DOI: 10.1021/la0701430] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/15/2023]
Abstract
The coverage dependent phase behavior of monolayers of alkyl thiols (CH3(CH2)(n-1)SH, denoted as CnSH) on mercury was studied for chain lengths 9 <or= n <or= 22, using surface tensiometry and surface-specific X-ray scattering methods. At low coverage, a disordered single layer of surface-parallel molecules is found for all n. At high coverage, a monolayer of standing-up molecules is formed, exhibiting well-ordered phases, the structure of which is n- and coverage-dependent. The molecular chains pack in a centered rectangular unit cell, with an approximately 27 degrees tilt from the surface normal toward nearest neighbors. The strong sulfur-mercury bond induces a noncentered unit cell for the headgroups, incorporating one mercury atom per two thiol molecules. The small but significant differences in structure of these films on gold and on mercury are discussed and assigned to the different structure of the subphase: long-range-ordered crystal for gold and short-range-ordered liquid for mercury.
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Affiliation(s)
- H Kraack
- Department of Physics, Bar-Ilan University, Ramat-Gan 52900, Israel
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21
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Yan Y, Xiong W, Li X, Lu T, Huang J, Li Z, Fu H. Molecular Packing Parameter in Bolaamphiphile Solutions: Adjustment of Aggregate Morphology by Modifying the Solution Conditions. J Phys Chem B 2007; 111:2225-30. [PMID: 17291026 DOI: 10.1021/jp065235x] [Citation(s) in RCA: 82] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The geometrical rule of molecular packing parameters in a bolaamphiphile solution was tested with experimental results. By modifying the solution conditions to change the molecular packing parameters, the morphology of the aggregate was successfully manipulated in a single-chain bolaamphiphile, disodium phenyl-1,4-bis (oxyhexanoate) (i.e., C6PhC6Na2 solution). Micelle-vesicle-tube transformation was observed by changing the pH and the addition of NaBr or octanol. In the mixed systems of oppositely charged bola/surfactants, the molecular packing parameter's role is related to the mixing ratio.
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Affiliation(s)
- Yun Yan
- State Key Laboratory for Structural Chemistry of Unstable and Stable Species, College of Chemistry and Molecular Engineering, and College of Life Science, Peking University, Beijing, 100871, People's Republic of China
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22
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Ofer E, Sloutskin E, Tamam L, Ocko BM, Deutsch M. Surface freezing in binary alkane-alcohol mixtures. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2006; 74:021602. [PMID: 17025441 DOI: 10.1103/physreve.74.021602] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/12/2006] [Indexed: 05/12/2023]
Abstract
Surface freezing was detected and studied in mixtures of alcohol and alkane molecules, using surface tensiometry and surface-specific x-ray scattering methods. Considering that surface freezing in pure alkanes forms an ordered monolayer and in alcohols it forms an ordered bilayer, the length mismatch repulsion was minimized by varying the carbon number of the alkane component around 2n, where n is the carbon number of the alcohol molecule. A solutionlike behavior was found for all mixtures, where the ideal liquid mixture phase-separates upon freezing both in the bulk and the surface. The solid exhibits a herringbone crystalline phase below an alkane mole fraction phi(t) approximately 0.8 and a rotator phase above it. The surface frozen film below phi(t) is an alkane monolayer exhibiting a next-nearest neighbor molecular tilt of a composition-dependent magnitude. Above phi(t), no diffraction peaks were observed. This could be explained by the intrinsically shorter-range order of the rotator phase and a possible proliferation of defects.
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Affiliation(s)
- E Ofer
- Department of Physics, Bar-Ilan University, Ramat-Gan 52900, Israel
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23
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Walker BG, Marzari N, Molteni C. Ab initio studies of layering behavior of liquid sodium surfaces and interfaces. J Chem Phys 2006; 124:174702. [PMID: 16689585 DOI: 10.1063/1.2187484] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We have studied the liquid surface of sodium with extensive ab initio molecular dynamics simulations based on ensemble density-functional theory. We find clear evidence of layering in the direction perpendicular to the surface that persists to temperatures more than 100 K above the melting point. We also observe clear Friedel oscillations in the electronic density response to the presence of a surface, but their direct effect on atomic layering is ruled out. A careful finite-size effect analysis accompanies our results, showing that liquid slabs 20-25 A thick capture the essential details of the surface structure. We conclude that geometrical confinement is the common cause for layer formation, which is similar to what happens at a liquid-solid interface: at a free liquid surface, the rapid decay of the electronic density from the bulk liquid value to zero in the vapor forms a hard wall against which the atoms pack. Finally, we predict x-ray reflectivities from ab initio molecular dynamics data that include some of the large surface-normal wave vector-transfer regions that, for alkali metals, are not accessible to experiments.
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Affiliation(s)
- Brent G Walker
- Condensed Matter Section, Abdus Salam International Centre for Theoretical Physics, Strada Costiera 11, I-34014 Trieste, Italy.
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24
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Cao D, Jiang T, Wu J. A hybrid method for predicting the microstructure of polymers with complex architecture: Combination of single-chain simulation with density functional theory. J Chem Phys 2006; 124:164904. [PMID: 16674167 DOI: 10.1063/1.2186323] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
A hybrid method is proposed to investigate the microstructure of various polymeric fluids confined between two parallel surfaces. The hybrid method combines a single-chain Monte Carlo (MC) simulation for the ideal-gas part of the Helmholtz energy and a density functional theory (DFT) for the excess part that arises from nonbonded intersegment interactions. The latter consists of a modified fundamental measure theory for excluded-volume effect, the first-order thermodynamics perturbation theory for chain connectivity, and a mean-field approximation for the van der Waals attraction. In comparison with a conventional DFT, the hybrid method avoids calculation of the time-consuming recursive functions and is directly applicable to polymers with arbitrary molecular architecture. Its numerical performance has been validated by extensive comparisons with MC data for the density distributions of totally flexible, semiflexible, or rigid polymers and those with starlike architecture. Special attention is also given to the formation of a nematic monolayer by rigid molecules laying perpendicular to a planar surface. The hybrid method predicts the surface pressure versus surface coverage in good agreement with experiment.
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Affiliation(s)
- Dapeng Cao
- Department of Chemical and Environmental Engineering, University of California, Riverside, California 92521, USA
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25
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Lefenfeld M, Baumert J, Sloutskin E, Kuzmenko I, Pershan P, Deutsch M, Nuckolls C, Ocko BM. Direct structural observation of a molecular junction by high-energy x-ray reflectometry. Proc Natl Acad Sci U S A 2006; 103:2541-5. [PMID: 16467139 PMCID: PMC1413780 DOI: 10.1073/pnas.0508070103] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2005] [Indexed: 11/18/2022] Open
Abstract
We report a direct angstrom resolution measurement of the structure of a molecular-size electronic junction comprising a single (or a double) layer of alkyl-thiol and alkyl-silane molecules at the buried interface between solid silicon and liquid mercury. The high-energy synchrotron x-ray measurements reveal densely packed layers comprising roughly interface-normal molecules. The monolayer's thickness is found to be 3-4 A larger than that of similar layers at the free surfaces of both mercury and silicon. The origins of this and the other unusual features detected are discussed in this article. Measurements of the bilayer junction with an applied potential did not show visible changes in the surface normal structure.
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Affiliation(s)
| | - Julian Baumert
- Department of Physics, Brookhaven National Laboratory, Upton, NY 11973
| | - Eli Sloutskin
- Department of Physics, Bar-Ilan University, Ramat-Gan 52900, Israel
| | - Ivan Kuzmenko
- Complex Materials Consortium Collaborative Access Team (CMC-CAT), Advanced Photon Source, Argonne National Laboratory, Argonne, IL 60439; and
| | - Peter Pershan
- Department of Physics, Harvard University, Cambridge, MA 02138
| | - Moshe Deutsch
- Department of Physics, Bar-Ilan University, Ramat-Gan 52900, Israel
| | - Colin Nuckolls
- *Department of Chemistry, Columbia University, New York, NY 10027
| | - Benjamin M. Ocko
- Department of Physics, Brookhaven National Laboratory, Upton, NY 11973
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Tamam L, Kraack H, Sloutskin E, Ocko BM, Pershan PS, Ulman A, Deutsch M. Structure of Mercaptobiphenyl Monolayers on Mercury. J Phys Chem B 2005; 109:12534-43. [PMID: 16852550 DOI: 10.1021/jp050278j] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The molecular-scale structure and phase behavior of single-component Langmuir films of 4'-methyl-4-mercaptobiphenyl (MMB) and 4'-perfluoromethyl-4-mercaptobiphenyl (FMMB) on mercury were studied using surface tensiometry, grazing incidence X-ray diffraction, and X-ray reflectivity. At low coverages, a condensed but in-plane disordered single layer of surface-parallel molecules is found for both compounds. At high coverages, both compounds exhibit in-plane-ordered phases of standing-up molecules. For MMB, the biphenyl core dominates the structure, yielding a centered-rectangular unit cell with an area A(x) of 21.8 A(2)/molecule, with molecules tilted by approximately 14 degrees from the surface normal in the nearest-neighbor direction, and a coherence length xi of >1000 A for the crystalline domains. For FMMB, the perfluoromethyl group dominates the structure, yielding a hexagonal unit cell with untilted molecules, an area A(x) of 24.2 A(2)/molecule, and a much smaller xi of approximately 110 A. The structure is discussed in comparison with self-assembled monolayers of MMB on crystalline Au(111) and similar-length alkanethiolate SAMs on Au(111) and on mercury. The differences in the structure are discussed and traced to the differences in the substrate's surface structure, and in the molecular cross section and rigidity.
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Affiliation(s)
- Lilach Tamam
- Physics Department, Bar-Ilan University, Ramat-Gan 52900, Israel
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Hong J, Chen J, Wang Y, Li X. A Simplified Fiber-Optic In-Line Method to Measure the Electro-Optic Coefficient of Corona Poled Polymers. JOURNAL OF POLYMER RESEARCH 2005. [DOI: 10.1007/s10965-004-2062-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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28
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Ocko BM, Kraack H, Pershan PS, Sloutskin E, Tamam L, Deutsch M. Crystalline phases of alkyl-thiol monolayers on liquid mercury. PHYSICAL REVIEW LETTERS 2005; 94:017802. [PMID: 15698133 DOI: 10.1103/physrevlett.94.017802] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/07/2004] [Indexed: 05/24/2023]
Abstract
The structure of octadecanethiol monolyers on liquid Hg surfaces, measured with subangstrom resolution, evolves with increasing coverage from a laterally disordered phase of surface-parallel molecules to ordered rotator phases of surface-normal molecules. For the latter, an abrupt transition is found at 19 A(2)/molecule from a rectangular packing of molecules tilted by 27 degrees in the nearest-neighbor direction to a hexagonal unit cell of untilted molecules. The unit cell of the tilted phase is centered for the chains and noncentered for the headgroups. The thiol headgroups associate in pairs with a single Hg atom, and the bonds form long-range orientational order. The different order of thiols on Au(111) and on Hg highlights the subphase's role in determining the overlayer's structure.
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Affiliation(s)
- B M Ocko
- Department of Physics, Brookhaven National Laboratory, Upton, NY 11973, USA.
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Kraack H, Ocko BM, Pershan PS, Tamam L, Deutsch M. Temperature dependence of the structure of Langmuir films of normal-alkanes on liquid mercury. J Chem Phys 2004; 121:8003-9. [PMID: 15485263 DOI: 10.1063/1.1799993] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
The temperature dependent phase behavior of Langmuir films of n-alkanes [CH3(CH2)(n-2)CH3, denote Cn] on mercury was studied for chain lengths 19< or =n< or =22 and temperatures 15< or =T< or =44 degrees C, using surface tensiometry and surface x-ray diffraction methods. In contrast with Langmuir films on water, where molecules invariably orient roughly surface normal, alkanes on mercury are always oriented surface parallel and show no long-range in-plane order at any surface pressure. A gas and several condensed phases of single, double, and triple layers of lying-down molecules are found, depending on n and T. At high coverages, the alkanes studied here show transitions from a triple to a double to a single layer with increasing temperature. The transition temperature from a double to a single layer is found to be approximately 5 degrees C, lower than the bulk rotator-to-liquid melting temperature, while the transition from a triple to a double layer is about as much below the double-to-single layer transition. Both monolayer and bulk transition temperatures show a linear increase with n with identical slopes of approximately 4.5 degrees C/CH2 within the range of n values addressed here. It is suggested that the film and bulk transitions are both driven by a common cause: the proliferation of gauche defects in the chain with increasing temperature.
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Affiliation(s)
- H Kraack
- Department of Physics, Bar-Ilan University, Ramat-Gan 52900, Israel
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Kraack H, Ocko BM, Pershan PS, Sloutskin E, Tamam L, Deutsch M. The structure and phase diagram of Langmuir films of alcohols on mercury. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2004; 20:5386-95. [PMID: 15986677 DOI: 10.1021/la0497954] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
The coverage-dependent phase behavior of molecular films of alcohols (CH3(CH2)n-2CH2OH, denoted as CnOH) on mercury was studied for chain lengths 8 < or = n < or = 28, using surface tensiometry and surface specific X-ray methods. Phases with surface-normal-oriented molecules are found at high coverage, showing the CS, S, and LS phases found also on water. Phases comprising surface parallel molecules, which do not exist on water, are found here at low coverage. For the lowest coverage a two-dimensional gas phase is found, followed, upon increasing the coverage, by an n-dependent sequence of condensed phases of up to four layers of surface-parallel molecules before converting to the surface-normal phases. In contrast with the surface-normal phases, all of the surface-parallel phases are found to lack long-range order in the surface-parallel direction. Adsorption energies are derived from the phase diagram for the alkyl chain and the alcohol headgroup.
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Affiliation(s)
- H Kraack
- Department of Physics, Bar-Ilan University, Ramat-Gan 52900, Israel
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Kraack H, Ocko BM, Pershan PS, Sloutskin E, Tamam L, Deutsch M. Fatty acid Langmuir films on liquid mercury: X-ray and surface tension studies. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2004; 20:5375-85. [PMID: 15986676 DOI: 10.1021/la049977y] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
The structure and phase behavior of liquid-mercury-supported molecular films of fatty acids (CH3(CH2)n-2COOH, denoted CnOOH) were studied for molecular lengths 7 < or = n < or = 24, by surface tensiometry and X-ray methods. Two qualitatively different film structures were found, depending on coverage. For high coverage, the film consists of a monolayer of roughly surface-normal molecules, showing a pressure-dependent sequence of structures similar, though not identical, to that of the corresponding water-supported Langmuir films. At low coverage, phases consisting of surface-parallel molecules are found, not observed on the aqueous subphases employed to date. In this range, a two-dimensional (2D) gas followed by a single and, for 14 < or = n < or = 24, also by a double layer of surface-parallel molecules is found as coverage is increased. Depending on chain length, the flat-lying phases have a crystalline 2D-ordered, a smectic-like 1D-ordered, or a disordered in-plane structure consisting of molecular dimers. The structure and thermodynamics of the films are discussed.
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Affiliation(s)
- H Kraack
- Department of Physics, Bar-Ilan University, Ramat-Gan 52900, Israel
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Kraack H, Ocko BM, Pershan PS, Sloutskin E, Deutsch M. Langmuir films of normal-alkanes on the surface of liquid mercury. J Chem Phys 2003. [DOI: 10.1063/1.1618211] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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