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Gauri HM, Patel R, Lombardo NS, Bevan MA, Bharti B. Field-Directed Motion, Cargo Capture, and Closed-Loop Controlled Navigation of Microellipsoids. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2024:e2403007. [PMID: 39126239 DOI: 10.1002/smll.202403007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/15/2024] [Revised: 08/01/2024] [Indexed: 08/12/2024]
Abstract
Microrobots have the potential for diverse applications, including targeted drug delivery and minimally invasive surgery. Despite advancements in microrobot design and actuation strategies, achieving precise control over their motion remains challenging due to the dominance of viscous drag, system disturbances, physicochemical heterogeneities, and stochastic Brownian forces. Here, a precise control over the interfacial motion of model microellipsoids is demonstrated using time-varying rotating magnetic fields. The impacts of microellipsoid aspect ratio, field characteristics, and magnetic properties of the medium and the particle on the motion are investigated. The role of mobile micro-vortices generated is highlighted by rotating microellipsoids in capturing, transporting, and releasing cargo objects. Furthermore, an approach is presented for controlled navigation through mazes based on real-time particle and obstacle sensing, path planning, and magnetic field actuation without human intervention. The study introduces a mechanism of directing motion of microparticles using rotating magnetic fields, and a control scheme for precise navigation and delivery of micron-sized cargo using simple microellipsoids as microbots.
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Affiliation(s)
- Hashir M Gauri
- Cain Department of Chemical Engineering, Louisiana State University, Baton Rouge, LA, 70803, USA
| | - Ruchi Patel
- Cain Department of Chemical Engineering, Louisiana State University, Baton Rouge, LA, 70803, USA
| | - Nicholas S Lombardo
- Cain Department of Chemical Engineering, Louisiana State University, Baton Rouge, LA, 70803, USA
| | - Michael A Bevan
- Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, MD, 21218, USA
| | - Bhuvnesh Bharti
- Cain Department of Chemical Engineering, Louisiana State University, Baton Rouge, LA, 70803, USA
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2
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Yang J, Yang L, Dong RY. Nanorod Diffusion near the Solid-Liquid Interface with Varied Wall Nonuniformity. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2024; 40:14110-14117. [PMID: 38937926 DOI: 10.1021/acs.langmuir.4c01570] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/29/2024]
Abstract
The complex diffusion behaviors of rod-shaped nanoparticles near the solid-liquid interface are closely related to various biological processes and technological applications. Despite recent advancements in understanding the diffusion dynamics of nanoparticles near some specific solid-liquid interfaces, systematical studies to tune the interfacial interaction or fabricating nonuniform wall to see their effects on the nanorod (NR) diffusion are still lacking. This work utilized molecular dynamics simulations to investigate the rotational and translational diffusion dynamics of a single NR near the solid-liquid interface. We constructed a patterned wall featuring adjustable nonuniformity, which was accomplished by modifying the interaction between NR and the wall, noting that the resulting nonuniformity limits both the translational and rotational diffusion of NR, evident from decreases in diffusion coefficients and exponents. By trajectory analysis, we categorized the diffusion modes of NRs near the patterned wall with varied nonuniformities into three types: Fickian diffusion, desorption-mediated flight, and in-plane diffusion. Furthermore, energy analysis based on the adsorption-desorption mechanism has demonstrated that the three diffusion states are driven by interactions between the NR and the wall, which are primarily influenced by rotational diffusion. These results could significantly deepen the understanding of anisotropic nanoparticle interfacial diffusion and would provide new insights into the transport mechanisms of nanoparticles within confined environments.
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Affiliation(s)
- Jingbin Yang
- School of Astronautics, Beihang University, Beijing 100191, China
| | - Lijun Yang
- School of Astronautics, Beihang University, Beijing 100191, China
- Aircraft and Propulsion Laboratory, Ningbo Institute of Technology, Beihang University, Ningbo 315100, China
| | - Ruo-Yu Dong
- School of Astronautics, Beihang University, Beijing 100191, China
- Aircraft and Propulsion Laboratory, Ningbo Institute of Technology, Beihang University, Ningbo 315100, China
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3
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Liu J, Sun K, Wang H. Anomalous diffusion in external-force-affected deterministic systems. Phys Rev E 2024; 110:014204. [PMID: 39160918 DOI: 10.1103/physreve.110.014204] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2024] [Accepted: 06/20/2024] [Indexed: 08/21/2024]
Abstract
This study investigates the impact of external forces on the movement of particles, specifically focusing on a type of box piecewise linear map that generates normal diffusion akin to Brownian motion. Through numerical methods, the research delves into the effects of two distinct external forces: linear forces linked to the particle's current position and periodic sinusoidal forces related to time. The results uncover anomalous dynamical behavior characterized by nonlinear growth in the ensemble-averaged mean-squared displacement (EAMSD), aging, and ergodicity breaking. Notably, the diffusion pattern of particles under linear external forces resembles an Ehrenfest double urn model, with its asymptotic EAMSD coinciding with the Langevin equation under linear potential. Meanwhile, particle movement influenced by periodic sinusoidal forces corresponds to an inhomogeneous Markov chain, with its external force amplitude and diffusion coefficient function exhibiting a "multipeak" fractal structure. The study also provides insights into the formation of this structure through the turnstiles dynamics.
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Sauer MA, Colburn T, Maiti S, Heyden M, Matyushov DV. Linear and Nonlinear Dielectric Response of Intrinsically Disordered Proteins. J Phys Chem Lett 2024; 15:5420-5427. [PMID: 38743557 DOI: 10.1021/acs.jpclett.4c00866] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/16/2024]
Abstract
Linear and nonlinear dielectric responses of solutions of intrinsically disordered proteins (IDPs) were analyzed by combining molecular dynamics simulations with formal theories. A large increment of the linear dielectric function over that of the solvent is found and related to large dipole moments of IDPs. The nonlinear dielectric effect (NDE) of the IDP far exceeds that of the bulk electrolyte, offering a route to interrogate protein conformational and rotational statistics and dynamics. Conformational flexibility of the IDP makes the dipole moment statistics consistent with the gamma/log-normal distributions and contributes to the NDE through the dipole moment's non-Gaussian parameter. The intrinsic non-Gaussian parameter of the dipole moment combines with the protein osmotic compressibility in the nonlinear dielectric susceptibility when dipolar correlations are screened by the electrolyte. The NDE is dominated by dipolar correlations when electrolyte screening is reduced.
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Affiliation(s)
- Michael A Sauer
- School of Molecular Sciences, Arizona State University, PO Box 871504, Tempe, Arizona 85287-1504, United States
| | - Taylor Colburn
- Department of Physics, Arizona State University, PO Box 871504, Tempe, Arizona 85287-1504, United States
| | - Sthitadhi Maiti
- School of Molecular Sciences, Arizona State University, PO Box 871504, Tempe, Arizona 85287-1504, United States
| | - Matthias Heyden
- School of Molecular Sciences, Arizona State University, PO Box 871504, Tempe, Arizona 85287-1504, United States
| | - Dmitry V Matyushov
- School of Molecular Sciences and Department of Physics, Arizona State University, PO Box 871504, Tempe, Arizona 85287-1504, United States
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5
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Besharat A, Radkovski J, Sibiryakov S. Effective action for dissipative and nonholonomic systems. Phys Rev E 2024; 109:L052103. [PMID: 38907505 DOI: 10.1103/physreve.109.l052103] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2023] [Accepted: 04/04/2024] [Indexed: 06/24/2024]
Abstract
We show that the action of a dynamical system can be supplemented by an effective action for its environment to reproduce arbitrary coordinate dependent ohmic dissipation and gyroscopic forces. The action is a generalization of the harmonic bath model and describes a set of massless interacting scalar fields in an auxiliary space coupled to the original system at the boundary. A certain limit of the model implements nonholonomic constraints. In the case of dynamics with nonlinearly realized symmetries the effective action takes the form of a two-dimensional nonlinear σ model. It provides a basis for application of path integral methods to general dissipative and nonholonomic systems.
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Affiliation(s)
- Afshin Besharat
- Department of Physics and Astronomy, McMaster University, 1280 Main Street West, Hamilton, Ontario, Canada L8S 4M1 and Perimeter Institute for Theoretical Physics, Waterloo, Ontario, Canada N2L 2Y5
| | - Jury Radkovski
- Department of Physics and Astronomy, McMaster University, 1280 Main Street West, Hamilton, Ontario, Canada L8S 4M1 and Perimeter Institute for Theoretical Physics, Waterloo, Ontario, Canada N2L 2Y5
| | - Sergey Sibiryakov
- Department of Physics and Astronomy, McMaster University, 1280 Main Street West, Hamilton, Ontario, Canada L8S 4M1 and Perimeter Institute for Theoretical Physics, Waterloo, Ontario, Canada N2L 2Y5
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6
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Höllring K, Baer A, Vučemilović-Alagić N, Smith DM, Smith AS. Anisotropic molecular diffusion in confinement II: A model for structurally complex particles applied to transport in thin ionic liquid films. J Colloid Interface Sci 2024; 657:272-289. [PMID: 38043229 DOI: 10.1016/j.jcis.2023.11.137] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2023] [Revised: 11/17/2023] [Accepted: 11/21/2023] [Indexed: 12/05/2023]
Abstract
HYPOTHESIS Diffusion in confinement is an important fundamental problem with significant implications for applications of supported liquid phases. However, resolving the spatially dependent diffusion coefficient, parallel and perpendicular to interfaces, has been a standing issue and for objects of nanometric size, which structurally fluctuate on a similar time scale as they diffuse, no methodology has been established so far. We hypothesise that the complex, coupled dynamics can be captured and analysed by using a model built on the 2-dimensional Smoluchowski equation and systematic coarse-graining. METHODS AND SIMULATIONS For large, flexible species, a universal approach is offered that does not make any assumptions about the separation of time scales between translation and other degrees of freedom. The method is validated on Molecular Dynamics simulations of bulk systems of a family of ionic liquids with increasing cation sizes where internal degrees of freedom have little to major effects. FINDINGS After validation on bulk liquids, where we provide an interpretation of two diffusion constants for each species found experimentally, we clearly demonstrate the anisotropic nature of diffusion coefficients at interfaces. Spatial variations in the diffusivities relate to interface-induced structuring of the ionic liquids. Notably, the length scales in strongly confined ionic liquids vary consistently but differently at the solid-liquid and liquid-vapour interfaces.
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Affiliation(s)
- Kevin Höllring
- PULS Group, Institute for Theoretical Physics, FAU Erlangen-Nürnberg, Cauerstraß e 3, 91058, Erlangen, Germany
| | - Andreas Baer
- PULS Group, Institute for Theoretical Physics, FAU Erlangen-Nürnberg, Cauerstraß e 3, 91058, Erlangen, Germany
| | - Nataša Vučemilović-Alagić
- PULS Group, Institute for Theoretical Physics, FAU Erlangen-Nürnberg, Cauerstraß e 3, 91058, Erlangen, Germany; Group of Computational Life Sciences, Department of Physical Chemistry, Ruđer Bošković Institute, Bijenička 54, Zagreb, 10000, Croatia
| | - David M Smith
- Group of Computational Life Sciences, Department of Physical Chemistry, Ruđer Bošković Institute, Bijenička 54, Zagreb, 10000, Croatia
| | - Ana-Sunčana Smith
- PULS Group, Institute for Theoretical Physics, FAU Erlangen-Nürnberg, Cauerstraß e 3, 91058, Erlangen, Germany; Group of Computational Life Sciences, Department of Physical Chemistry, Ruđer Bošković Institute, Bijenička 54, Zagreb, 10000, Croatia.
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7
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Li D, Liu Y, Luo H, Jing G. Anisotropic Diffusion of Elongated Particles in Active Coherent Flows. MICROMACHINES 2024; 15:199. [PMID: 38398928 PMCID: PMC10893016 DOI: 10.3390/mi15020199] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/27/2023] [Revised: 01/23/2024] [Accepted: 01/26/2024] [Indexed: 02/25/2024]
Abstract
The study of particle diffusion, a classical conundrum in scientific inquiry, holds manifold implications for various real-world applications. Particularly within the domain of active flows, where the motion of self-propelled particles instigates fluid movement, extensive research has been dedicated to unraveling the dynamics of passive spherical particles. This scrutiny has unearthed intriguing phenomena, such as superdiffusion at brief temporal scales and conventional diffusion at longer intervals. In contrast to the spherical counterparts, anisotropic particles, which manifest directional variations, are prevalent in nature. Although anisotropic behavior in passive fluids has been subject to exploration, enigmatic aspects persist in comprehending the interplay of anisotropic particles within active flows. This research delves into the intricacies of anisotropic passive particle diffusion, exposing a notable escalation in translational and rotational diffusion coefficients, as well as the superdiffusion index, contingent upon bacterial concentration. Through a detailed examination of particle coordinates, the directional preference of particle diffusion is not solely dependent on the particle length, but rather determined by the ratio of the particle length to the associated length scale of the background flow field. These revelations accentuate the paramount importance of unraveling the nuances of anisotropic particle diffusion within the context of active flows. Such insights not only contribute to the fundamental understanding of particle dynamics, but also have potential implications for a spectrum of applications.
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Affiliation(s)
| | - Yanan Liu
- School of Physics, Northwest University, Xi’an 710127, China
| | | | - Guangyin Jing
- School of Physics, Northwest University, Xi’an 710127, China
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8
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Zhang X, Dai X, Habib MA, Gao L, Chen W, Wei W, Tang Z, Qi X, Gong X, Jiang L, Yan LT. Unconventionally fast transport through sliding dynamics of rodlike particles in macromolecular networks. Nat Commun 2024; 15:525. [PMID: 38225267 PMCID: PMC10789817 DOI: 10.1038/s41467-024-44765-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2023] [Accepted: 01/04/2024] [Indexed: 01/17/2024] Open
Abstract
Transport of rodlike particles in confinement environments of macromolecular networks plays crucial roles in many important biological processes and technological applications. The relevant understanding has been limited to thin rods with diameter much smaller than network mesh size, although the opposite case, of which the dynamical behaviors and underlying physical mechanisms remain unclear, is ubiquitous. Here, we solve this issue by combining experiments, simulations and theory. We find a nonmonotonic dependence of translational diffusion on rod length, characterized by length commensuration-governed unconventionally fast dynamics which is in striking contrast to the monotonic dependence for thin rods. Our results clarify that such a fast diffusion of thick rods with length of integral multiple of mesh size follows sliding dynamics and demonstrate it to be anomalous yet Brownian. Moreover, good agreement between theoretical analysis and simulations corroborates that the sliding dynamics is an intermediate regime between hopping and Brownian dynamics, and provides a mechanistic interpretation based on the rod-length dependent entropic free energy barrier. The findings yield a principle, that is, length commensuration, for optimal design of rodlike particles with highly efficient transport in confined environments of macromolecular networks, and might enrich the physics of the diffusion dynamics in heterogeneous media.
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Affiliation(s)
- Xuanyu Zhang
- State Key Laboratory of Chemical Engineering, Department of Chemical Engineering, Tsinghua University, 100084, Beijing, China
- Key Laboratory of Advanced Materials (MOE), Tsinghua University, 100084, Beijing, China
| | - Xiaobin Dai
- State Key Laboratory of Chemical Engineering, Department of Chemical Engineering, Tsinghua University, 100084, Beijing, China
- Key Laboratory of Advanced Materials (MOE), Tsinghua University, 100084, Beijing, China
| | - Md Ahsan Habib
- South China Advanced Institute for Soft Matter Science and Technology, School of Emergent Soft Matter, South China University of Technology, 510640, Guangzhou, China
| | - Lijuan Gao
- State Key Laboratory of Chemical Engineering, Department of Chemical Engineering, Tsinghua University, 100084, Beijing, China
- Key Laboratory of Advanced Materials (MOE), Tsinghua University, 100084, Beijing, China
| | - Wenlong Chen
- State Key Laboratory of Chemical Engineering, Department of Chemical Engineering, Tsinghua University, 100084, Beijing, China
- Key Laboratory of Advanced Materials (MOE), Tsinghua University, 100084, Beijing, China
| | - Wenjie Wei
- State Key Laboratory of Chemical Engineering, Department of Chemical Engineering, Tsinghua University, 100084, Beijing, China
- Key Laboratory of Advanced Materials (MOE), Tsinghua University, 100084, Beijing, China
| | - Zhongqiu Tang
- South China Advanced Institute for Soft Matter Science and Technology, School of Emergent Soft Matter, South China University of Technology, 510640, Guangzhou, China
| | - Xianyu Qi
- Faculty of Materials Science and Engineering, South China University of Technology, 510640, Guangzhou, China
| | - Xiangjun Gong
- Faculty of Materials Science and Engineering, South China University of Technology, 510640, Guangzhou, China
| | - Lingxiang Jiang
- South China Advanced Institute for Soft Matter Science and Technology, School of Emergent Soft Matter, South China University of Technology, 510640, Guangzhou, China.
| | - Li-Tang Yan
- State Key Laboratory of Chemical Engineering, Department of Chemical Engineering, Tsinghua University, 100084, Beijing, China.
- Key Laboratory of Advanced Materials (MOE), Tsinghua University, 100084, Beijing, China.
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9
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Ryabov A, Tasinkevych M. Mechanochemical active ratchet. Sci Rep 2023; 13:20572. [PMID: 37996603 PMCID: PMC10667355 DOI: 10.1038/s41598-023-47465-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2023] [Accepted: 11/14/2023] [Indexed: 11/25/2023] Open
Abstract
Self-propelled nanoparticles moving through liquids offer the possibility of creating advanced applications where such nanoswimmers can operate as artificial molecular-sized motors. Achieving control over the motion of nanoswimmers is a crucial aspect for their reliable functioning. While the directionality of micron-sized swimmers can be controlled with great precision, steering nano-sized active particles poses a real challenge. One of the reasons is the existence of large fluctuations of active velocity at the nanoscale. Here, we describe a mechanism that, in the presence of a ratchet potential, transforms these fluctuations into a net current of active nanoparticles. We demonstrate the effect using a generic model of self-propulsion powered by chemical reactions. The net motion along the easy direction of the ratchet potential arises from the coupling of chemical and mechanical processes and is triggered by a constant, transverse to the ratchet, force. The current magnitude sensitively depends on the amplitude and the periodicity of the ratchet potential and the strength of the transverse force. Our results highlight the importance of thermodynamically consistent modeling of chemical reactions in active matter at the nanoscale and suggest new ways of controlling dynamics in such systems.
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Affiliation(s)
- Artem Ryabov
- Department of Macromolecular Physics, Faculty of Mathematics and Physics, Charles University, V Holešovičkách 2, 18000 , Praha 8, Czech Republic
- Departamento de Física, Faculdade de Ciências, Universidade de Lisboa, 1749-016, Lisboa, Portugal
- Centro de Física Teórica e Computacional, Faculdade de Ciências, Universidade de Lisboa, 1749-016, Lisboa, Portugal
| | - Mykola Tasinkevych
- Departamento de Física, Faculdade de Ciências, Universidade de Lisboa, 1749-016, Lisboa, Portugal.
- Centro de Física Teórica e Computacional, Faculdade de Ciências, Universidade de Lisboa, 1749-016, Lisboa, Portugal.
- SOFT Group, School of Science and Technology, Nottingham Trent University, Clifton Lane, Nottingham, NG11 8NS, UK.
- International Institute for Sustainability with Knotted Chiral Meta Matter, Hiroshima University, Higashihiroshima, 739-8511, Japan.
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10
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Höllring K, Baer A, Vučemilović-Alagić N, Smith DM, Smith AS. Anisotropic molecular diffusion in confinement I: Transport of small particles in potential and density gradients. J Colloid Interface Sci 2023; 650:1930-1940. [PMID: 37517192 DOI: 10.1016/j.jcis.2023.07.088] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2023] [Revised: 07/10/2023] [Accepted: 07/13/2023] [Indexed: 08/01/2023]
Abstract
HYPOTHESIS Diffusion in confinement is an important fundamental problem with significant implications for applications of supported liquid phases. However, resolving the spatially dependent diffusion coefficient, parallel and perpendicular to interfaces, has been a standing issue. In the vicinity of interfaces, density fluctuations as a consequence of layering locally impose statistical drift, which impedes the analysis of spatially dependent diffusion coefficients even further. We hypothesise, that we can derive a model to spatially resolve interface-perpendicular diffusion coefficients based on local lifetime statistics with an extension to explicitly account for the effect of local drift using the Smoluchowski equation, that allows us to resolve anisotropic and spatially dependent diffusivity landscapes at interfaces. METHODS AND SIMULATIONS An analytic relation between local crossing times in system slices and diffusivity as well as an explicit term for calculating drift-induced systematic errors is presented. The method is validated on Molecular Dynamics simulations of bulk water and applied to simulations of water in slit pores. FINDINGS After validation on bulk liquids, we clearly demonstrate the anisotropic nature of diffusion coefficients at interfaces. Significant spatial variations in the diffusivities correlate with interface-induced structuring but cannot be solely attributed to the drift induced by local density fluctuations.
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Affiliation(s)
- Kevin Höllring
- PULS Group, Department of Physics, Friedrich-Alexander Universität Erlangen-Nürnberg, IZNF, Cauerstraße 3, 91058 Erlangen, Germany
| | - Andreas Baer
- PULS Group, Department of Physics, Friedrich-Alexander Universität Erlangen-Nürnberg, IZNF, Cauerstraße 3, 91058 Erlangen, Germany
| | - Nataša Vučemilović-Alagić
- PULS Group, Department of Physics, Friedrich-Alexander Universität Erlangen-Nürnberg, IZNF, Cauerstraße 3, 91058 Erlangen, Germany; Group of Computational Life Sciences, Department of Physical Chemistry, Ruđer Bošković Institute, Bijenička 54, Zagreb, 10000 Croatia
| | - David M Smith
- Group of Computational Life Sciences, Department of Physical Chemistry, Ruđer Bošković Institute, Bijenička 54, Zagreb, 10000 Croatia
| | - Ana-Sunčana Smith
- PULS Group, Department of Physics, Friedrich-Alexander Universität Erlangen-Nürnberg, IZNF, Cauerstraße 3, 91058 Erlangen, Germany; Group of Computational Life Sciences, Department of Physical Chemistry, Ruđer Bošković Institute, Bijenička 54, Zagreb, 10000 Croatia.
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11
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Li H, Teal D, Liang Z, Kwon H, Huo D, Jin A, Fischer P, Fan DE. Precise electrokinetic position and three-dimensional orientation control of a nanowire bioprobe in solution. NATURE NANOTECHNOLOGY 2023; 18:1213-1221. [PMID: 37500771 DOI: 10.1038/s41565-023-01439-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/26/2022] [Accepted: 06/01/2023] [Indexed: 07/29/2023]
Abstract
Owing to Brownian-motion effects, the precise manipulation of individual micro- and nanoparticles in solution is challenging. Therefore, scanning-probe-based techniques, such as atomic force microscopy, attach particles to cantilevers to enable their use as nanoprobes. Here we demonstrate a versatile electrokinetic trap that simultaneously controls the two-dimensional position with a precision of 20 nm and 0.5° in the three-dimensional orientation of an untethered nanowire, as small as 300 nm in length, under an optical microscope. The method permits the active transport of nanowires with a speed-dependent accuracy reaching 90 nm at 2.7 μm s-1. It also allows for their synchronous three-dimensional alignment and rotation during translocation along complex trajectories. We use the electrokinetic trap to accurately move a nanoprobe and stably position it on the surface of a single bacterial cell for sensing secreted metabolites for extended periods. The precision-controlled manipulation underpins developing nanorobotic tools for assembly, micromanipulation and biological measurements with subcellular resolution.
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Affiliation(s)
- Huaizhi Li
- Materials Science and Engineering Program, Texas Materials Institute, University of Texas at Austin, Austin, TX, USA
| | - Daniel Teal
- Walker Department of Mechanical Engineering, University of Texas at Austin, Austin, TX, USA
| | - Zexi Liang
- Materials Science and Engineering Program, Texas Materials Institute, University of Texas at Austin, Austin, TX, USA
| | - Hyunah Kwon
- Institute for Molecular Systems Engineering and Advanced Materials, Heidelberg University, Heidelberg, Germany
- Max Planck Institute for Medical Research, Heidelberg, Germany
| | - David Huo
- Department of Biomedical Engineering, University of Texas at Austin, Austin, TX, USA
| | - Alison Jin
- Chandra Family Department of Electrical and Computer Engineering, University of Texas at Austin, Austin, TX, USA
| | - Peer Fischer
- Institute for Molecular Systems Engineering and Advanced Materials, Heidelberg University, Heidelberg, Germany
- Max Planck Institute for Medical Research, Heidelberg, Germany
| | - Donglei Emma Fan
- Materials Science and Engineering Program, Texas Materials Institute, University of Texas at Austin, Austin, TX, USA.
- Walker Department of Mechanical Engineering, University of Texas at Austin, Austin, TX, USA.
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12
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Yesibolati MN, Callegari A, Pineda J, Volpe G, Lisicki M, Mølhave K. Live-imaging and Quantification of Complex Nanostructure Hydrodynamic Motion in 3D Using Liquid Phase Transmission Electron Microscopy. MICROSCOPY AND MICROANALYSIS : THE OFFICIAL JOURNAL OF MICROSCOPY SOCIETY OF AMERICA, MICROBEAM ANALYSIS SOCIETY, MICROSCOPICAL SOCIETY OF CANADA 2023; 29:668-669. [PMID: 37613286 DOI: 10.1093/micmic/ozad067.328] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/25/2023]
Affiliation(s)
- Murat Nulati Yesibolati
- National Centre for Nano Fabrication and Characterization, Technical University of Denmark, Lyngby, Denmark
| | - Agnese Callegari
- Department of Physics, University of Gothenburg, Göteborg, Sweden
| | - Jesús Pineda
- Department of Physics, University of Gothenburg, Göteborg, Sweden
| | - Giovanni Volpe
- Department of Physics, University of Gothenburg, Göteborg, Sweden
| | - Maciej Lisicki
- Institute of Theoretical Physics, Faculty of Physics, University of Warsaw, Warsaw, Poland
| | - Kristian Mølhave
- National Centre for Nano Fabrication and Characterization, Technical University of Denmark, Lyngby, Denmark
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13
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Tognato R, Bronte Ciriza D, Maragò OM, Jones PH. Modelling red blood cell optical trapping by machine learning improved geometrical optics calculations. BIOMEDICAL OPTICS EXPRESS 2023; 14:3748-3762. [PMID: 37497516 PMCID: PMC10368044 DOI: 10.1364/boe.488931] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/21/2023] [Revised: 06/09/2023] [Accepted: 06/16/2023] [Indexed: 07/28/2023]
Abstract
Optically trapping red blood cells allows for the exploration of their biophysical properties, which are affected in many diseases. However, because of their nonspherical shape, the numerical calculation of the optical forces is slow, limiting the range of situations that can be explored. Here we train a neural network that improves both the accuracy and the speed of the calculation and we employ it to simulate the motion of a red blood cell under different beam configurations. We found that by fixing two beams and controlling the position of a third, it is possible to control the tilting of the cell. We anticipate this work to be a promising approach to study the trapping of complex shaped and inhomogeneous biological materials, where the possible photodamage imposes restrictions in the beam power.
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Affiliation(s)
- R. Tognato
- Department of Physics and Astronomy, University College London, Gower Street, London, WC1E 6BT, UK
| | - D. Bronte Ciriza
- CNR-IPCF, Istituto per i Processi Chimico-Fisici, Messina, I- 98158, Italy
| | - O. M. Maragò
- CNR-IPCF, Istituto per i Processi Chimico-Fisici, Messina, I- 98158, Italy
| | - P. H. Jones
- Department of Physics and Astronomy, University College London, Gower Street, London, WC1E 6BT, UK
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14
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Patil G, Ghosh A. Analysing the motion of scallop-like swimmers in a noisy environment. THE EUROPEAN PHYSICAL JOURNAL. SPECIAL TOPICS 2023; 232:927-933. [PMID: 37309448 PMCID: PMC7614634 DOI: 10.1140/epjs/s11734-022-00728-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/15/2022] [Accepted: 11/21/2022] [Indexed: 06/14/2023]
Abstract
A scallop-like swimmer going back-and-forth (reciprocal motion) does not produce any net motility. We discuss a similar artificial microswimmer that is powered by magnetic fields. In the presence of thermal noise, the helical swimmer exhibits enhanced diffusivity during reciprocal actuation. The external magnetic drive can be further modified to break the reciprocity. Equipped with only the information on swimmer trajectories and orientations, we discuss quantitative methods to estimate the degree of reciprocity and non-reciprocity in such scenarios. The paper proposes a quantitative measure and validates the same with numerical simulations, further supported by experiments.
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Affiliation(s)
- Gouri Patil
- Department of Physics, Indian Institute of Science, Bangalore 560012, India
| | - Ambarish Ghosh
- Department of Physics, Indian Institute of Science, Bangalore 560012, India
- Centre for Nano Science and Engineering, Indian Institute of Science, Bangalore 560012, India
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15
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Djutanta F, Brown PT, Nainggolan B, Coullomb A, Radhakrishnan S, Sentosa J, Yurke B, Hariadi RF, Shepherd DP. Decoding the hydrodynamic properties of microscale helical propellers from Brownian fluctuations. Proc Natl Acad Sci U S A 2023; 120:e2220033120. [PMID: 37235635 PMCID: PMC10235983 DOI: 10.1073/pnas.2220033120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2022] [Accepted: 04/12/2023] [Indexed: 05/28/2023] Open
Abstract
The complex motility of bacteria, ranging from single-swimmer behaviors such as chemotaxis to collective dynamics, including biofilm formation and active matter phenomena, is driven by their microscale propellers. Despite extensive study of swimming flagellated bacteria, the hydrodynamic properties of their helical-shaped propellers have never been directly measured. The primary challenges to directly studying microscale propellers are 1) their small size and fast, correlated motion, 2) the necessity of controlling fluid flow at the microscale, and 3) isolating the influence of a single propeller from a propeller bundle. To solve the outstanding problem of characterizing the hydrodynamic properties of these propellers, we adopt a dual statistical viewpoint that connects to the hydrodynamics through the fluctuation-dissipation theorem (FDT). We regard the propellers as colloidal particles and characterize their Brownian fluctuations, described by 21 diffusion coefficients for translation, rotation, and correlated translation-rotation in a static fluid. To perform this measurement, we applied recent advances in high-resolution oblique plane microscopy to generate high-speed volumetric movies of fluorophore-labeled, freely diffusing Escherichia coli flagella. Analyzing these movies with a bespoke helical single-particle tracking algorithm, we extracted trajectories, calculated the full set of diffusion coefficients, and inferred the average propulsion matrix using a generalized Einstein relation. Our results provide a direct measurement of a microhelix's propulsion matrix and validate proposals that the flagella are highly inefficient propellers, with a maximum propulsion efficiency of less than 3%. Our approach opens broad avenues for studying the motility of particles in complex environments where direct hydrodynamic approaches are not feasible.
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Affiliation(s)
- Franky Djutanta
- Biodesign Center for Molecular Design and Biomimetics at the Biodesign Institute, Arizona State University, Tempe, AZ85287
- School for Engineering of Matter, Transport and Energy, Arizona State University, Tempe, AZ85287
| | - Peter T. Brown
- Center for Biological Physics and Department of Physics, Arizona State University, Tempe, AZ85287
| | - Bonfilio Nainggolan
- Center for Biological Physics and Department of Physics, Arizona State University, Tempe, AZ85287
| | - Alexis Coullomb
- Center for Biological Physics and Department of Physics, Arizona State University, Tempe, AZ85287
| | - Sritharini Radhakrishnan
- Biodesign Center for Molecular Design and Biomimetics at the Biodesign Institute, Arizona State University, Tempe, AZ85287
- School of Electrical, Computer and Energy Engineering, Arizona State University, Tempe, AZ85287
| | - Jason Sentosa
- Biodesign Center for Molecular Design and Biomimetics at the Biodesign Institute, Arizona State University, Tempe, AZ85287
| | - Bernard Yurke
- Micron School of Materials Science and Electrical and Computer Engineering Department, Boise State University, Boise, ID83725
| | - Rizal F. Hariadi
- Biodesign Center for Molecular Design and Biomimetics at the Biodesign Institute, Arizona State University, Tempe, AZ85287
- Center for Biological Physics and Department of Physics, Arizona State University, Tempe, AZ85287
| | - Douglas P. Shepherd
- Center for Biological Physics and Department of Physics, Arizona State University, Tempe, AZ85287
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16
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Mauleon-Amieva A, Allen MP, Liverpool TB, Royall CP. Dynamics and interactions of Quincke roller clusters: From orbits and flips to excited states. SCIENCE ADVANCES 2023; 9:eadf5144. [PMID: 37196094 PMCID: PMC10191443 DOI: 10.1126/sciadv.adf5144] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/26/2022] [Accepted: 04/13/2023] [Indexed: 05/19/2023]
Abstract
Active matter systems may be characterized by the conversion of energy into active motion, e.g., the self-propulsion of microorganisms. Artificial active colloids form models that exhibit essential properties of more complex biological systems but are amenable to laboratory experiments. While most experimental models consist of spheres, active particles of different shapes are less understood. Furthermore, interactions between these anisotropic active colloids are even less explored. Here, we investigate the motion of active colloidal clusters and the interactions between them. We focus on self-assembled dumbbells and trimers powered by an external dc electric field. For dumbbells, we observe an activity-dependent behavior of spinning, circular, and orbital motions. Moreover, collisions between dumbbells lead to the hierarchical self-assembly of tetramers and hexamers, both of which form rotational excited states. On the other hand, trimers exhibit flipping motion that leads to trajectories reminiscent of a honeycomb lattice.
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Affiliation(s)
- Abraham Mauleon-Amieva
- H.H. Wills Physics Laboratory, Tyndall Avenue, Bristol BS8 1TL, UK
- School of Chemistry, University of Bristol, Cantock’s Close, Bristol BS8 1TS, UK
- Centre for Nanoscience and Quantum Information, Tyndall Avenue, Bristol BS8 1FD, UK
- Bristol Centre for Functional Nanomaterials, Tyndall Avenue, Bristol BS8 1FD, UK
| | - Michael P. Allen
- H.H. Wills Physics Laboratory, Tyndall Avenue, Bristol BS8 1TL, UK
- Department of Physics, University of Warwick, Coventry CV4 7AL, UK
| | - Tanniemola B. Liverpool
- School of Mathematics, University of Bristol, Fry Building, Woodland Road, Bristol BS8 1UG UK
| | - C. Patrick Royall
- H.H. Wills Physics Laboratory, Tyndall Avenue, Bristol BS8 1TL, UK
- School of Chemistry, University of Bristol, Cantock’s Close, Bristol BS8 1TS, UK
- Centre for Nanoscience and Quantum Information, Tyndall Avenue, Bristol BS8 1FD, UK
- Gulliver UMR CNRS 7083, ESPCI Paris, Université PSL, 75005 Paris, France
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17
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Villa S, Larobina D, Stocco A, Blanc C, Villone MM, D'Avino G, Nobili M. Dynamics of prolate spheroids in the vicinity of an air-water interface. SOFT MATTER 2023; 19:2646-2653. [PMID: 36967649 DOI: 10.1039/d2sm01665f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
Abstract
In this article, we present the mobilities of prolate ellipsoidal micrometric particles close to an air-water interface measured by dual wave reflection interference microscopy. Particle's position and orientation with respect to the interface are simultaneously measured as a function of time. From the measured mean square displacement, five particle mobilities (3 translational and 2 rotational) and two translational-rotational cross-correlations are extracted. The fluid dynamics governing equations are solved by the finite element method to numerically evaluate the same mobilities, imposing either slip and no-slip boundary conditions to the flow at the air-water interface. The comparison between experiments and simulations reveals an agreement with no-slip boundary conditions prediction for the translation normal to the interface and the out-of-plane rotation, and with slip ones for parallel translations and in-plane rotation. We rationalize these evidences in the framework of surface incompressibility at the interface.
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Affiliation(s)
- Stefano Villa
- Max Planck Institute for Dynamics and Self-Organization, 37077 Göttingen, Germany.
| | - Domenico Larobina
- Institute of Polymers, Composites, and Biomaterials, National Research Council of Italy, Naples, 80055 Portici, Italy
| | - Antonio Stocco
- Institut Charles Sadron, CNRS UPR22, University of Strasbourg, Strasbourg, France
| | - Christophe Blanc
- Laboratoire Charles Coulomb (L2C), UMR 5221 CNRS-Université de Montpellier, Montpellier, France.
| | - Massimiliano M Villone
- Department of Chemical, Materials and Production Engineering, University of Naples Federico II, P.le Tecchio 80, 80125 Naples, Italy
| | - Gaetano D'Avino
- Department of Chemical, Materials and Production Engineering, University of Naples Federico II, P.le Tecchio 80, 80125 Naples, Italy
| | - Maurizio Nobili
- Laboratoire Charles Coulomb (L2C), UMR 5221 CNRS-Université de Montpellier, Montpellier, France.
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18
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Ulbrich JA, Fernández-Rico C, Rost B, Vialetto J, Isa L, Urbach JS, Dullens RPA. Effect of curvature on the diffusion of colloidal bananas. Phys Rev E 2023; 107:L042602. [PMID: 37198802 DOI: 10.1103/physreve.107.l042602] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2022] [Accepted: 02/22/2023] [Indexed: 05/19/2023]
Abstract
Anisotropic colloidal particles exhibit complex dynamics which play a crucial role in their functionality, transport, and phase behavior. In this Letter, we investigate the two-dimensional diffusion of smoothly curved colloidal rods-also known as colloidal bananas-as a function of their opening angle α. We measure the translational and rotational diffusion coefficients of the particles with opening angles ranging from 0^{∘} (straight rods) to nearly 360^{∘}(closed rings). In particular, we find that the anisotropic diffusion of the particles varies nonmonotonically with their opening angle and that the axis of fastest diffusion switches from the long to the short axis of the particles when α>180^{∘}. We also find that the rotational diffusion coefficient of nearly closed rings is approximately an order of magnitude higher than that of straight rods of the same length. Finally, we show that the experimental results are consistent with slender body theory, indicating that the dynamical behavior of the particles arises primarily from their local drag anisotropy. These results highlight the impact of curvature on the Brownian motion of elongated colloidal particles, which must be taken into account when seeking to understand the behavior of curved colloidal particles.
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Affiliation(s)
- Justin-Aurel Ulbrich
- Department of Chemistry, Physical and Theoretical Laboratory, University of Oxford, South Parks Road, Oxford OX1 3QZ, United Kingdom
- Department of Materials, ETH Zürich, 8093 Zurich, Switzerland
| | - Carla Fernández-Rico
- Department of Chemistry, Physical and Theoretical Laboratory, University of Oxford, South Parks Road, Oxford OX1 3QZ, United Kingdom
- Department of Materials, ETH Zürich, 8093 Zurich, Switzerland
| | - Brian Rost
- Department of Physics and Institute for Soft Matter Synthesis and Metrology, Georgetown University, Washington, DC 20057, USA
| | - Jacopo Vialetto
- Department of Materials, ETH Zürich, 8093 Zurich, Switzerland
| | - Lucio Isa
- Department of Materials, ETH Zürich, 8093 Zurich, Switzerland
| | - Jeffrey S Urbach
- Department of Physics and Institute for Soft Matter Synthesis and Metrology, Georgetown University, Washington, DC 20057, USA
| | - Roel P A Dullens
- Department of Chemistry, Physical and Theoretical Laboratory, University of Oxford, South Parks Road, Oxford OX1 3QZ, United Kingdom
- Institute for Molecules and Materials, Radboud University, Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands
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19
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Millan E, Lavaud M, Amarouchene Y, Salez T. Numerical simulations of confined Brownian-yet-non-Gaussian motion. THE EUROPEAN PHYSICAL JOURNAL. E, SOFT MATTER 2023; 46:24. [PMID: 37002415 DOI: 10.1140/epje/s10189-023-00281-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/04/2022] [Accepted: 03/20/2023] [Indexed: 06/19/2023]
Abstract
Brownian motion is a central scientific paradigm. Recently, due to increasing efforts and interests towards miniaturization and small-scale physics or biology, the effects of confinement on such a motion have become a key topic of investigation. Essentially, when confined near a wall, a particle moves much slower than in the bulk due to friction at the boundaries. The mobility is therefore locally hindered and space-dependent, which in turn leads to the apparition of so-called multiplicative noises, and associated non-Gaussianities which remain difficult to resolve at all times. Here, we exploit simple, optimized and efficient numerical simulations to address Brownian motion in confinement in a broadrange and quantitative way. To do so, we integrate the overdamped Langevin equation governing the thermal dynamics of a negatively-buoyant single spherical colloid within a viscous fluid confined by two rigid walls, including surface charges. From the produced large set of long random trajectories, we perform a complete statistical analysis and extract all the key quantities, such as the probability distributions in displacements and their main moments. In particular, we propose a novel method to compute high-order cumulants by reducing convergence problems, and employ it to efficiently characterize the inherent non-Gaussianity of the confined process.
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Affiliation(s)
- Elodie Millan
- Univ. Bordeaux, CNRS, LOMA, UMR 5798, 33400, Talence, France
| | - Maxime Lavaud
- Univ. Bordeaux, CNRS, LOMA, UMR 5798, 33400, Talence, France
| | | | - Thomas Salez
- Univ. Bordeaux, CNRS, LOMA, UMR 5798, 33400, Talence, France.
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20
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Alexandre A, Lavaud M, Fares N, Millan E, Louyer Y, Salez T, Amarouchene Y, Guérin T, Dean DS. Non-Gaussian Diffusion Near Surfaces. PHYSICAL REVIEW LETTERS 2023; 130:077101. [PMID: 36867824 DOI: 10.1103/physrevlett.130.077101] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/06/2022] [Accepted: 12/22/2022] [Indexed: 06/18/2023]
Abstract
We study the diffusion of particles confined close to a single wall and in double-wall planar channel geometries where the local diffusivities depend on the distance to the boundaries. Displacement parallel to the walls is Brownian as characterized by its variance, but it is non-Gaussian having a nonzero fourth cumulant. Establishing a link with Taylor dispersion, we calculate the fourth cumulant and the tails of the displacement distribution for general diffusivity tensors along with potentials generated by either the walls or externally, for instance, gravity. Experimental and numerical studies of the motion of a colloid in the direction parallel to the wall give measured fourth cumulants which are correctly predicted by our theory. Interestingly, contrary to models of Brownian-yet-non-Gaussian diffusion, the tails of the displacement distribution are shown to be Gaussian rather than exponential. All together, our results provide additional tests and constraints for the inference of force maps and local transport properties near surfaces.
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Affiliation(s)
- Arthur Alexandre
- Université de Bordeaux, CNRS, LOMA, UMR 5798, F-33400 Talence, France
| | - Maxime Lavaud
- Université de Bordeaux, CNRS, LOMA, UMR 5798, F-33400 Talence, France
| | - Nicolas Fares
- Université de Bordeaux, CNRS, LOMA, UMR 5798, F-33400 Talence, France
- Department of Physics, Ecole Normale Supérieure de Lyon, 69364 Lyon, France
| | - Elodie Millan
- Université de Bordeaux, CNRS, LOMA, UMR 5798, F-33400 Talence, France
| | - Yann Louyer
- Université de Bordeaux, CNRS, LOMA, UMR 5798, F-33400 Talence, France
| | - Thomas Salez
- Université de Bordeaux, CNRS, LOMA, UMR 5798, F-33400 Talence, France
| | | | - Thomas Guérin
- Université de Bordeaux, CNRS, LOMA, UMR 5798, F-33400 Talence, France
| | - David S Dean
- Université de Bordeaux, CNRS, LOMA, UMR 5798, F-33400 Talence, France
- Team MONC, INRIA Bordeaux Sud Ouest, CNRS UMR 5251, Bordeaux INP, Université de Bordeaux, F-33400 Talence, France
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21
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Schaller FM, Punzmann H, Schröder-Turk GE, Saadatfar M. Mixing properties of bi-disperse ellipsoid assemblies: mean-field behaviour in a granular matter experiment. SOFT MATTER 2023; 19:951-958. [PMID: 36633168 DOI: 10.1039/d2sm00922f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
The structure and spatial statistical properties of amorphous ellipsoid assemblies have profound scientific and industrial significance in many systems, from cell assays to granular materials. This paper uses a fundamental theoretical relationship for mixture distributions to explain the observations of an extensive X-ray computed tomography study of granular ellipsoidal packings. We study a size-bi-disperse mixture of two types of ellipsoids of revolutions that have the same aspect ratio of α ≈ 0.57 and differ in size, by about 10% in linear dimension, and compare these to mono-disperse systems of ellipsoids with the same aspect ratio. Jammed configurations with a range of packing densities are achieved by employing different tapping protocols. We numerically interrogate the final packing configurations by analyses of the local packing fraction distributions calculated from the Voronoi diagrams. Our main finding is that the bi-disperse ellipsoidal packings studied here can be interpreted as a mixture of two uncorrelated mono-disperse packings, insensitive to the compaction protocol. Our results are consolidated by showing that the local packing fraction shows no correlation beyond their first shell of neighbours in the binary mixtures. We propose a model of uncorrelated binary mixture distribution that describes the observed experimental data with high accuracy. This analysis framework will enable future studies to test whether the observed mean-field behaviour is specific to the particular granular system or the specific parameter values studied here or if it is observed more broadly in other bi-disperse non-spherical particle systems.
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Affiliation(s)
- F M Schaller
- Friedrich-Alexander Universität Erlangen-Nürnberg, Institut für Theoretische Physik, Staudtstr. 7B, 91058 Erlangen, Germany.
- Karlsruhe Institute of Technology (KIT), Institut für Stochastik, 76131 Karlsruhe, Germany
| | - H Punzmann
- The Australian National University, Research School of Physics, Canberra ACT 2601, Australia
| | - G E Schröder-Turk
- The Australian National University, Research School of Physics, Canberra ACT 2601, Australia
- Murdoch University, College of Science, Technology, Engineering and Mathematics, 90 South St, Murdoch WA 6150, Australia
| | - M Saadatfar
- The Australian National University, Research School of Physics, Canberra ACT 2601, Australia
- The University of Sydney, School of Civil Engineering, NSW 2006, Australia.
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22
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Zhang W, Taheri-Ledari R, Ganjali F, Mirmohammadi SS, Qazi FS, Saeidirad M, KashtiAray A, Zarei-Shokat S, Tian Y, Maleki A. Effects of morphology and size of nanoscale drug carriers on cellular uptake and internalization process: a review. RSC Adv 2022; 13:80-114. [PMID: 36605676 PMCID: PMC9764328 DOI: 10.1039/d2ra06888e] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2022] [Accepted: 11/25/2022] [Indexed: 12/24/2022] Open
Abstract
In the field of targeted drug delivery, the effects of size and morphology of drug nanocarriers are of great importance and need to be discussed in depth. To be concise, among all the various shapes of nanocarriers, rods and tubes with a narrow cross-section are the most preferred shapes for the penetration of a cell membrane. In this regard, several studies have focused on methods to produce nanorods and nanotubes with controlled optimized size and aspect ratio (AR). Additionally, a non-spherical orientation could affect the cellular uptake process while a tangent angle of less than 45° is better at penetrating the membrane, and Ω = 90° is beneficial. Moreover, these nanocarriers show different behaviors when confronting diverse cells whose fields should be investigated in future studies. In this survey, a comprehensive classification based on carrier shape is first submitted. Then, the most commonly used methods for control over the size and shape of the carriers are reviewed. Finally, influential factors on the cellular uptake and internalization processes and related analytical methods for evaluating this process are discussed.
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Affiliation(s)
- Wenjie Zhang
- Department of Nuclear Medicine, West China Hospital, Sichuan University No. 37, Guoxue Alley Chengdu 610041 Sichuan Province P. R. China
| | - Reza Taheri-Ledari
- Catalysts and Organic Synthesis Research Laboratory, Department of Chemistry, Iran University of Science and Technology Tehran 16846-13114 Iran +98 21 73021584 +98 21 77240640-50
| | - Fatemeh Ganjali
- Catalysts and Organic Synthesis Research Laboratory, Department of Chemistry, Iran University of Science and Technology Tehran 16846-13114 Iran +98 21 73021584 +98 21 77240640-50
| | - Seyedeh Shadi Mirmohammadi
- Catalysts and Organic Synthesis Research Laboratory, Department of Chemistry, Iran University of Science and Technology Tehran 16846-13114 Iran +98 21 73021584 +98 21 77240640-50
| | - Fateme Sadat Qazi
- Catalysts and Organic Synthesis Research Laboratory, Department of Chemistry, Iran University of Science and Technology Tehran 16846-13114 Iran +98 21 73021584 +98 21 77240640-50
| | - Mahdi Saeidirad
- Catalysts and Organic Synthesis Research Laboratory, Department of Chemistry, Iran University of Science and Technology Tehran 16846-13114 Iran +98 21 73021584 +98 21 77240640-50
| | - Amir KashtiAray
- Catalysts and Organic Synthesis Research Laboratory, Department of Chemistry, Iran University of Science and Technology Tehran 16846-13114 Iran +98 21 73021584 +98 21 77240640-50
| | - Simindokht Zarei-Shokat
- Catalysts and Organic Synthesis Research Laboratory, Department of Chemistry, Iran University of Science and Technology Tehran 16846-13114 Iran +98 21 73021584 +98 21 77240640-50
| | - Ye Tian
- Department of Orthodontics, West China Hospital of Stomatology, Sichuan University No. 14, 3rd Section of South Renmin Road Chengdu 610041 P. R. China
| | - Ali Maleki
- Catalysts and Organic Synthesis Research Laboratory, Department of Chemistry, Iran University of Science and Technology Tehran 16846-13114 Iran +98 21 73021584 +98 21 77240640-50
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23
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Safi Samghabadi F, Slim AH, Smith MW, Chabi M, Conrad JC. Dynamics of Filamentous Viruses in Polyelectrolyte Solutions. Macromolecules 2022. [DOI: 10.1021/acs.macromol.2c01641] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Affiliation(s)
- Farshad Safi Samghabadi
- Department of Chemical and Biomolecular Engineering, University of Houston, Houston, Texas77204, United States
| | - Ali H. Slim
- Department of Chemical and Biomolecular Engineering, University of Houston, Houston, Texas77204, United States
| | - Maxwell W. Smith
- Department of Chemical and Biomolecular Engineering, University of Houston, Houston, Texas77204, United States
| | - Maede Chabi
- Department of Biomedical Engineering, University of Houston, Houston, Texas77204, United States
| | - Jacinta C. Conrad
- Department of Chemical and Biomolecular Engineering, University of Houston, Houston, Texas77204, United States
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24
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Qin G, Zhang R, Yang C, Lv X, Pei K, Yang L, Liu X, Zhang X, Che R. Magnetic-Field-Assisted Diffusion Motion of Magnetic Skyrmions. ACS NANO 2022; 16:15927-15934. [PMID: 36166823 DOI: 10.1021/acsnano.2c03046] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
Studies of the diffusion dynamics of magnetic skyrmions have generated widespread interest in both fundamental physics and spintronics applications. Here we report the magnetic-field-assisted diffusion motion of skyrmions in a microstructured chiral FeGe magnet. We demonstrate the enhancement of diffusion motion of magnetic skyrmions that is manipulated and driven by an oscillatory magnetic field. Further, the directed diffusion of skyrmions is observed when an in-plane field was introduced to break the symmetry of the system. Finally, we demonstrate the application of a magnetic field can induce an arrangements transition of skyrmions assemble in microstructure, that is, from a stiff hexagonal lattice to a weak interactional isotropic state. By using a step-ascended magnetic field we finished the observation of a particle-like diffusive motion for magnetic skyrmions that transport from high-concentration regions to low-concentration regions and the diffusion flux is proportional to the concentration gradient followed Fick's law.
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Affiliation(s)
- Gang Qin
- Laboratory of Advanced Materials, Shanghai Key Lab of Molecular Catalysis and Innovative Materials, Department of Materials Science, Fudan University, Shanghai 200438, P. R. China
| | - Ruixuan Zhang
- Laboratory of Advanced Materials, Shanghai Key Lab of Molecular Catalysis and Innovative Materials, Department of Materials Science, Fudan University, Shanghai 200438, P. R. China
| | - Chendi Yang
- Laboratory of Advanced Materials, Shanghai Key Lab of Molecular Catalysis and Innovative Materials, Department of Materials Science, Fudan University, Shanghai 200438, P. R. China
| | - Xiaowei Lv
- Laboratory of Advanced Materials, Shanghai Key Lab of Molecular Catalysis and Innovative Materials, Department of Materials Science, Fudan University, Shanghai 200438, P. R. China
| | - Ke Pei
- Laboratory of Advanced Materials, Shanghai Key Lab of Molecular Catalysis and Innovative Materials, Department of Materials Science, Fudan University, Shanghai 200438, P. R. China
| | - Liting Yang
- Laboratory of Advanced Materials, Shanghai Key Lab of Molecular Catalysis and Innovative Materials, Department of Materials Science, Fudan University, Shanghai 200438, P. R. China
| | - Xianhu Liu
- Laboratory of Advanced Materials, Shanghai Key Lab of Molecular Catalysis and Innovative Materials, Department of Materials Science, Fudan University, Shanghai 200438, P. R. China
| | - Xuefeng Zhang
- Laboratory of Advanced Materials, Shanghai Key Lab of Molecular Catalysis and Innovative Materials, Department of Materials Science, Fudan University, Shanghai 200438, P. R. China
| | - Renchao Che
- Laboratory of Advanced Materials, Shanghai Key Lab of Molecular Catalysis and Innovative Materials, Department of Materials Science, Fudan University, Shanghai 200438, P. R. China
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25
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Junot G, Leyva SG, Pauer C, Calero C, Pagonabarraga I, Liedl T, Tavacoli J, Tierno P. Friction Induces Anisotropic Propulsion in Sliding Magnetic Microtriangles. NANO LETTERS 2022; 22:7408-7414. [PMID: 36062566 PMCID: PMC9523709 DOI: 10.1021/acs.nanolett.2c02295] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/07/2022] [Revised: 08/22/2022] [Indexed: 06/15/2023]
Abstract
In viscous fluids, motile microentities such as bacteria or artificial swimmers often display different transport modes than macroscopic ones. A current challenge in the field aims at using friction asymmetry to steer the motion of microscopic particles. Here we show that lithographically shaped magnetic microtriangles undergo a series of complex transport modes when driven by a precessing magnetic field, including a surfing-like drift close to the bottom plane. In this regime, we exploit the triangle asymmetric shape to obtain a transversal drift which is later used to transport the microtriangle in any direction along the plane. We explain this friction-induced anisotropic sliding with a minimal numerical model capable to reproduce the experimental results. Due to the flexibility offered by soft-lithographic sculpturing, our method to guide anisotropic-shaped magnetic microcomposites can be potentially extended to many other field responsive structures operating in fluid media.
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Affiliation(s)
- Gaspard Junot
- Departament
de Física de la Matèria Condensada, Universitat de Barcelona, 08028 Barcelona, Spain
| | - Sergi G. Leyva
- Departament
de Física de la Matèria Condensada, Universitat de Barcelona, 08028 Barcelona, Spain
- Universitat
de Barcelona Institute of Complex Systems (UBICS), Universitat de Barcelona, 08028, Barcelona, Spain
| | - Christoph Pauer
- Faculty
of Physics and Center for Nano Science, Ludwig-Maximilians-Universität, Geschwister-Scholl-Platz 1, München 80539, Germany
| | - Carles Calero
- Departament
de Física de la Matèria Condensada, Universitat de Barcelona, 08028 Barcelona, Spain
- Institut
de Nanociéncia i Nanotecnologia, Universitat de Barcelona, 08028, Barcelona, Spain
| | - Ignacio Pagonabarraga
- Departament
de Física de la Matèria Condensada, Universitat de Barcelona, 08028 Barcelona, Spain
- Universitat
de Barcelona Institute of Complex Systems (UBICS), Universitat de Barcelona, 08028, Barcelona, Spain
- CECAM,
Centre Européen de Calcul Atomique et Moléculaire, École Polytechnique Fédérale
de Lausanne (EPFL), Batochime, Avenue Forel 2, 1015 Lausanne, Switzerland
| | - Tim Liedl
- Faculty
of Physics and Center for Nano Science, Ludwig-Maximilians-Universität, Geschwister-Scholl-Platz 1, München 80539, Germany
| | - Joe Tavacoli
- Faculty
of Physics and Center for Nano Science, Ludwig-Maximilians-Universität, Geschwister-Scholl-Platz 1, München 80539, Germany
| | - Pietro Tierno
- Universitat
de Barcelona Institute of Complex Systems (UBICS), Universitat de Barcelona, 08028, Barcelona, Spain
- Institut
de Nanociéncia i Nanotecnologia, Universitat de Barcelona, 08028, Barcelona, Spain
- Departament
de Física de la Matèria Condensada, Universitat de Barcelona, 08028, Barcelona, Spain
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26
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Yu L, Le Nagard L, Barkley S, Smith L, Fradin C. Experimental determination of the propulsion matrix of the body of helical Magnetospirillum magneticum cells. Phys Rev E 2022; 106:034407. [PMID: 36266829 DOI: 10.1103/physreve.106.034407] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2021] [Accepted: 06/07/2022] [Indexed: 06/16/2023]
Abstract
Helical-shaped magnetotactic bacteria provide a rare opportunity to precisely measure both the translational and rotational friction coefficients of micron-sized chiral particles. The possibility to align these cells with a uniform magnetic field allows clearly separating diffusion along and perpendicular to their longitudinal axis. Meanwhile, their corkscrew shape allows detecting rotations around their longitudinal axis, after which orientation correlation analysis can be used to retrieve rotational diffusion coefficients in the two principal directions. Using light microscopy, we measured the four principal friction coefficients of deflagellated Magnetospirillum magneticum cells, and compared our results to that expected for cylinders of comparable size. We show that for rotational motions, the overall dimensions of the cell body are what matters most, while the exact body shape has a larger influence on translational motions. To obtain a full characterization of the friction matrix of these elongated chiral particles, we also quantified the coupling between the rotation around and translation along the longitudinal axis of the cell. Our results suggest that for this bacterial species cell body rotation could significantly contribute to cellular propulsion.
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Affiliation(s)
- Liu Yu
- Department of Physics and Astronomy, McMaster University, 1280 Main Street W, Hamilton, Ontario L8S4M1, Canada
| | - Lucas Le Nagard
- Department of Physics and Astronomy, McMaster University, 1280 Main Street W, Hamilton, Ontario L8S4M1, Canada
| | - Solomon Barkley
- Department of Physics and Astronomy, McMaster University, 1280 Main Street W, Hamilton, Ontario L8S4M1, Canada
| | - Lauren Smith
- Department of Physics and Astronomy, McMaster University, 1280 Main Street W, Hamilton, Ontario L8S4M1, Canada
| | - Cécile Fradin
- Department of Physics and Astronomy, McMaster University, 1280 Main Street W, Hamilton, Ontario L8S4M1, Canada
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27
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Luo Y, Zeng C, Huang T, Ai BQ. Anomalous transport tuned through stochastic resetting in the rugged energy landscape of a chaotic system with roughness. Phys Rev E 2022; 106:034208. [PMID: 36266857 DOI: 10.1103/physreve.106.034208] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2022] [Accepted: 08/15/2022] [Indexed: 06/16/2023]
Abstract
Stochastic resetting causes kinetic phase transitions, whereas its underlying physical mechanism remains to be elucidated. We here investigate the anomalous transport of a particle moving in a chaotic system with a stochastic resetting and a rough potential and focus on how the stochastic resetting, roughness, and nonequilibrium noise affect the transports of the particle. We uncover the physical mechanism for stochastic resetting resulting in the anomalous transport in a nonlinear chaotic system: The particle is reset to a new basin of attraction which may be different from the initial basin of attraction from the view of dynamics. From the view of the energy landscape, the particle is reset to a new energy state of the energy landscape which may be different from the initial energy state. This resetting can lead to a kinetic phase transition between no transport and a finite net transport or between negative mobility and positive mobility. The roughness and noise also lead to the transition. Based on the mechanism, the transport of the particle can be tuned by these parameters. For example, the combination of the stochastic resetting, roughness, and noise can enhance the transport and tune negative mobility, the enhanced stability of the system, and the resonant-like activity. We analyze these results through variances (e.g., mean-squared velocity, etc.) and correlation functions (i.e., velocity autocorrelation function, position-velocity correlation function, etc.). Our results can be extensively applied in the biology, physics, and chemistry, even social system.
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Affiliation(s)
- Yuhui Luo
- Faculty of Civil Engineering and Mechanics/Faculty of Science, Kunming University of Science and Technology, Kunming 650500, China
- School of Physics and Information Engineering, Zhaotong University, Zhaotong 657000, China
| | - Chunhua Zeng
- Faculty of Civil Engineering and Mechanics/Faculty of Science, Kunming University of Science and Technology, Kunming 650500, China
| | - Tao Huang
- Faculty of Civil Engineering and Mechanics/Faculty of Science, Kunming University of Science and Technology, Kunming 650500, China
| | - Bao-Quan Ai
- Guangdong Provincial Key Laboratory of Quantum Engineering and Quantum Materials, GPETR Center for Quantum Precision Measurement, SPTE, South China Normal University, Guangzhou 510006, China
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28
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Ryabov A, Tasinkevych M. Diffusion coefficient and power spectrum of active particles with a microscopically reversible mechanism of self-propelling. J Chem Phys 2022; 157:104108. [DOI: 10.1063/5.0101520] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Catalytically active macromolecules are envisioned as key building blocks in development of artificial nanomotors. However, theory and experiments report conflicting findings regarding their dynamics. The lack of consensus is mostly caused by a limited understanding of specifics of self-propulsion mechanisms at the nanoscale. Here, we study a generic model of a self-propelled nanoparticle that does not rely on a particular mechanism. Instead, its main assumption is the fundamental symmetry of microscopic dynamics of chemical reactions: the principle of microscopic reversibility. Significant consequences of this assumption arise if we subject the particle to an action of an external time-periodic force. The particle diffusion coefficient is then enhanced compared to the unbiased dynamics. The enhancement can be controlled by the force amplitude and frequency. We also derive the power spectrum of particle trajectories. Among new effects stemming from the microscopic reversibility are the enhancement of the spectrum at all frequencies and sigmoid-shaped transitions and a peak at characteristic frequencies of rotational diffusion and external forcing. The microscopic reversibility is a generic property of a broad class of chemical reactions, therefore we expect that the presented results will motivate new experimental studies aimed at testing of our predictions. This could provide new insights into dynamics of catalytic macromolecules.
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Affiliation(s)
- Artem Ryabov
- Faculty of Mathematics and Physics, Department of Macromolecular Physics, Charles University, Czech Republic
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29
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Tang Z, Eichmann SL, Lounis B, Cognet L, MacKintosh FC, Pasquali M. Single-walled carbon nanotube reptation dynamics in submicron sized pores from randomly packed mono-sized colloids. SOFT MATTER 2022; 18:5509-5517. [PMID: 35848600 DOI: 10.1039/d2sm00305h] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Studying the Brownian motion of fibers and semi-flexible filaments in porous media is the key to understanding the transport and mechanical properties in a variety of systems. The motion of semi-flexible filaments in gel-like porous media including polymer networks and cell cytoskeleton has been studied theoretically and experimentally, whereas the motion of these materials in packed-colloid porous media, advanced foams, and rock-like systems has not been thoroughly studied. Here we use video microscopy to directly visualize the reptation and transport of intrinsically fluorescent, semiflexible, semiconducting single-walled carbon nanotubes (SWCNTs) in the sub-micron pores of packed colloids as fixed obstacles of packed-colloid porous media. By visualizing the filament motion and Brownian diffusion at different locations in the pore structures, we study how the properties of the environment, like the pore shape and pore structure of the porous media, affect SWCNT mobility. These results show that the porous media structure controls SWCNT reorientation during Brownian diffusion. In packed-colloid pores, SWCNTs diffuse along straight pores and bend across pores; conversely, in gel pores, SWCNTs consistently diffuse into curved pores, displaying a faster parallel motion. In both gel and packed-colloid porous media, SWCNT finite stiffness enhances SWCNT rotational diffusion and prevents jamming, allowing for inter-pore diffusion.
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Affiliation(s)
- Zhao Tang
- Department of Chemical and Biomolecular Engineering, Rice University, Houston, Texas 77005, USA.
| | - Shannon L Eichmann
- Department of Chemical and Biomolecular Engineering, Rice University, Houston, Texas 77005, USA.
| | - Brahim Lounis
- Laboratoire Photonique Numérique et Nanosciences, Université de Bordeaux, LP2N, F-33405 Talence, France
- Institut d'Optique and CNRS, LP2N, F-33405 Talence, France
| | - Laurent Cognet
- Laboratoire Photonique Numérique et Nanosciences, Université de Bordeaux, LP2N, F-33405 Talence, France
- Institut d'Optique and CNRS, LP2N, F-33405 Talence, France
| | - Frederick C MacKintosh
- Department of Chemical and Biomolecular Engineering, Rice University, Houston, Texas 77005, USA.
- Department of Chemistry, Rice University, Houston, Texas 77005, USA
- Center for Theoretical Biological Physics, Rice University, Houston, TX 77030, USA
- Department of Physics and Astronomy, Rice University, Houston, Texas 77005, USA
| | - Matteo Pasquali
- Department of Chemical and Biomolecular Engineering, Rice University, Houston, Texas 77005, USA.
- Department of Chemistry, Rice University, Houston, Texas 77005, USA
- Department of Materials Science and NanoEngineering, The Carbon Hub, The Smalley Institute for Nanoscale Science and Technology, Rice University, Houston, Texas 77005, USA
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30
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Jin S, Park J, Lee WJ, Ahn Y, Park Y, Park M, Hwang I, Seo K, Seo D. Two GPSes in a Ball: Deciphering the Endosomal Tug-of-War Using Plasmonic Dark-Field STORM. JACS AU 2022; 2:1596-1603. [PMID: 35911456 PMCID: PMC9327083 DOI: 10.1021/jacsau.2c00180] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Live video recording of intracellular material transport is a promising means of deciphering the fascinating underlying mechanisms driving life at the molecular level. Such technology holds the key to realizing real-time observation at appropriate resolutions in three-dimensional (3D) space within living cells. Here, we report an optical microscopic method for probing endosomal dynamics with proper spatiotemporal resolution within 3D space in live cells: plasmonic dark-field STORM (pdf-STORM). We first confirmed that pdf-STORM has a spatial resolution comparable to that of scanning electron microscopy. Additionally, by observing two optical probes within a single organelle, we were able to track rotational movements and demonstrate the feasibility of using pdf-STORM to observe the angular displacements of an endosome during a "tug-of-war" over an extended period. Finally, we show various biophysical parameters of the hitherto unelucidated dynamics of endosomes-angular displacement is discontinuous and y-axis movement predominates and follows a long-tail distribution.
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Affiliation(s)
- Siwoo Jin
- Department
of Physics and Chemistry, DGIST, Daegu 42988, Republic of Korea
| | - Jiseong Park
- Department
of Physics and Chemistry, DGIST, Daegu 42988, Republic of Korea
| | - Wonhee John Lee
- Department
of Physics and Chemistry, DGIST, Daegu 42988, Republic of Korea
- Department
of New Biology, DGIST, Daegu 42988, Republic
of Korea
| | - Yongdeok Ahn
- Department
of Physics and Chemistry, DGIST, Daegu 42988, Republic of Korea
| | - Youngchan Park
- Department
of Physics and Chemistry, DGIST, Daegu 42988, Republic of Korea
| | - Minsoo Park
- Department
of Physics and Chemistry, DGIST, Daegu 42988, Republic of Korea
| | - Inchan Hwang
- School
of Energy and Chemical Engineering, UNIST, Ulsan 44919, Republic of Korea
| | - Kwanyong Seo
- School
of Energy and Chemical Engineering, UNIST, Ulsan 44919, Republic of Korea
| | - Daeha Seo
- Department
of Physics and Chemistry, DGIST, Daegu 42988, Republic of Korea
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31
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Varma VA, Malhotra I, Babu SB. Enhancement in the diffusivity of Brownian spheroids in the presence of spheres. Phys Rev E 2022; 106:014602. [PMID: 35974557 DOI: 10.1103/physreve.106.014602] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2021] [Accepted: 06/13/2022] [Indexed: 06/15/2023]
Abstract
In the present paper, we have extended the simulation technique Brownian cluster dynamics (BCD) to analyze the dynamics of the binary mixture of hard ellipsoids and spheres. The shape dependent diffusional properties have been incorporated into BCD using Perrin's factor and compared with analytical results of a one-component ellipsoidal system. We have investigated pathways to enhance the diffusivity of spheroids in the binary mixture by manipulating the phase behavior of the system through varying the fraction of spheres in the binary mixture. We show that at low volume fraction the spherical particles have a higher diffusion coefficient than the ellipsoids due to the higher friction coefficient. However, at a higher volume fraction, we show that the diffusion coefficient of the ellipsoids increases irrespective of the aspect ratio due to the anisotropic shape.
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Affiliation(s)
- Vikki Anand Varma
- Out of Equilibrium Group, Department of Physics, Indian Institute of Technology Delhi, New Delhi 110016, India
| | - Isha Malhotra
- Out of Equilibrium Group, Department of Physics, Indian Institute of Technology Delhi, New Delhi 110016, India
| | - Sujin B Babu
- Out of Equilibrium Group, Department of Physics, Indian Institute of Technology Delhi, New Delhi 110016, India
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32
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Arauz-Lara JL, Ramírez-Saíto Á, Haro-Pérez C. Rotational and translational microrheology from shape-anisotropic particles. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2022; 34:334002. [PMID: 35671751 DOI: 10.1088/1361-648x/ac768b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/27/2022] [Accepted: 06/07/2022] [Indexed: 06/15/2023]
Abstract
In this work, we report measurements of the mean squared angular and translational displacements of a colloidal dumbbell immersed in a viscoelastic fluid using digital microscopy. From the mean squared displacements, we obtain the mechanical properties of the media. Both angular and translational motions provide the same viscoelastic complex modulus and agree with that obtained from the translational motion of a spherical probe particle.
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Affiliation(s)
- José Luis Arauz-Lara
- Instituto de Física, Universidad Autónoma de San Luis Potosí, Álvaro Obregón 64, 7800 San Luis Potosí, S.L.P., Mexico
| | - Ángeles Ramírez-Saíto
- Instituto de Física, Universidad Autónoma de San Luis Potosí, Álvaro Obregón 64, 7800 San Luis Potosí, S.L.P., Mexico
| | - Catalina Haro-Pérez
- Área de Física de Procesos Irreversibles, Departamento de Ciencias Básicas, Universidad Autónoma Metropolitana-Azcapotzalco, 02200 Ciudad de México, Mexico
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33
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Hoffmann WH, Gao B, Mulkerns NMC, Hinton AG, Hanna S, Hall SR, Gersen H. Determining nanorod dimensions in dispersion with size anisotropy nanoparticle tracking analysis. Phys Chem Chem Phys 2022; 24:13040-13048. [PMID: 35583236 DOI: 10.1039/d2cp00432a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Control over nanorod dimensions is critical to their application, requiring fast, robust characterisation of their volume and aspect ratio whilst in their working medium. Here, we present an extension of Nanoparticle Tracking Analysis which determines the aspect ratio of nanoparticles from the polarisation state of scattered light in addition to a hydrodynamic diameter from Brownian motion. These data, in principle, permit the determination of nanorod dimensions of any composition using Nanoparticle Tracking Analysis. The results are compared with transmission electron microscopy and show that this technique can additionally determine the aggregation state of the nanorod dispersion if single nanorod dimensions are determined with a complementary technique. We also show it is possible to differentiate nanoparticles of similar hydrodynamic diameter by their depolarised scattering. Finally, we assess the ability of the technique to output nanorod dimensions and suggest ways to further improve the approach. This technique will enable rapid characterisation of nanorods in suspension, which are important tools for nanotechnology.
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Affiliation(s)
- William H Hoffmann
- H.H. Wills Physics Laboratory, University of Bristol, Tyndall Avenue, Bristol BS8 1TL, UK. .,Bristol Centre for Functional Nanomaterials, University of Bristol, Tyndall Avenue, Bristol BS8 1TL, UK.,School of Chemistry, University of Bristol, Cantock's Close, Bristol BS8 1TS, UK
| | - Bo Gao
- H.H. Wills Physics Laboratory, University of Bristol, Tyndall Avenue, Bristol BS8 1TL, UK.
| | - Niall M C Mulkerns
- H.H. Wills Physics Laboratory, University of Bristol, Tyndall Avenue, Bristol BS8 1TL, UK. .,Bristol Centre for Functional Nanomaterials, University of Bristol, Tyndall Avenue, Bristol BS8 1TL, UK
| | - Alexander G Hinton
- H.H. Wills Physics Laboratory, University of Bristol, Tyndall Avenue, Bristol BS8 1TL, UK. .,School of Chemistry, University of Bristol, Cantock's Close, Bristol BS8 1TS, UK
| | - Simon Hanna
- H.H. Wills Physics Laboratory, University of Bristol, Tyndall Avenue, Bristol BS8 1TL, UK.
| | - Simon R Hall
- Bristol Centre for Functional Nanomaterials, University of Bristol, Tyndall Avenue, Bristol BS8 1TL, UK.,School of Chemistry, University of Bristol, Cantock's Close, Bristol BS8 1TS, UK
| | - Henkjan Gersen
- H.H. Wills Physics Laboratory, University of Bristol, Tyndall Avenue, Bristol BS8 1TL, UK. .,Bristol Centre for Functional Nanomaterials, University of Bristol, Tyndall Avenue, Bristol BS8 1TL, UK
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34
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Hybrid Time-Dependent Ginzburg–Landau Simulations of Block Copolymer Nanocomposites: Nanoparticle Anisotropy. Polymers (Basel) 2022; 14:polym14091910. [PMID: 35567080 PMCID: PMC9103753 DOI: 10.3390/polym14091910] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2022] [Revised: 04/27/2022] [Accepted: 05/02/2022] [Indexed: 11/16/2022] Open
Abstract
Block copolymer melts are perfect candidates to template the position of colloidal nanoparticles in the nanoscale, on top of their well-known suitability for lithography applications. This is due to their ability to self-assemble into periodic ordered structures, in which nanoparticles can segregate depending on the polymer–particle interactions, size and shape. The resulting coassembled structure can be highly ordered as a combination of both the polymeric and colloidal properties. The time-dependent Ginzburg–Landau model for the block copolymer was combined with Brownian dynamics for nanoparticles, resulting in an efficient mesoscopic model to study the complex behaviour of block copolymer nanocomposites. This review covers recent developments of the time-dependent Ginzburg–Landau/Brownian dynamics scheme. This includes efforts to parallelise the numerical scheme and applications of the model. The validity of the model is studied by comparing simulation and experimental results for isotropic nanoparticles. Extensions to simulate nonspherical and inhomogeneous nanoparticles are discussed and simulation results are discussed. The time-dependent Ginzburg–Landau/Brownian dynamics scheme is shown to be a flexible method which can account for the relatively large system sizes required to study block copolymer nanocomposite systems, while being easily extensible to simulate nonspherical nanoparticles.
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35
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Iakovlev IA, Deviatov AY, Lvov Y, Fakhrullina G, Fakhrullin RF, Mazurenko VV. Probing Diffusive Dynamics of Natural Tubule Nanoclays with Machine Learning. ACS NANO 2022; 16:5867-5873. [PMID: 35349265 DOI: 10.1021/acsnano.1c11025] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Reproducibility of the experimental results and object of study itself is one of the basic principles in science. But what if the object characterized by technologically important properties is natural and cannot be artificially reproduced one-to-one in the laboratory? The situation becomes even more complicated when we are interested in exploring stochastic properties of a natural system and only a limited set of noisy experimental data is available. In this paper we address these problems by exploring diffusive motion of some natural clays, halloysite and sepiolite, in a liquid environment. By using a combination of dark-field microscopy and machine learning algorithms, a quantitative theoretical characterization of the nanotubes' rotational diffusive dynamics is performed. Scanning the experimental video with the gradient boosting tree method, we can trace time dependence of the diffusion coefficient and probe different regimes of nonequilibrium rotational dynamics that are due to contacts with surfaces and other experimental imperfections. The method we propose is of general nature and can be applied to explore diffusive dynamics of various biological systems in real time.
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Affiliation(s)
- Ilia A Iakovlev
- Theoretical Physics and Applied Mathematics Department, Ural Federal University, Mira Street 19, Ekaterinburg 620002, Russia
| | - Alexander Y Deviatov
- Theoretical Physics and Applied Mathematics Department, Ural Federal University, Mira Street 19, Ekaterinburg 620002, Russia
| | - Yuri Lvov
- Institute for Micromanufacturing, Louisiana Tech University, Ruston, Louisiana 71272, United States
| | - Gölnur Fakhrullina
- Institute of Fundamental Medicine and Biology, Kazan Federal University, Kreml uramı 18, Kazan Republic of Tatarstan, Russian Federation, 420008
| | - Rawil F Fakhrullin
- Institute of Fundamental Medicine and Biology, Kazan Federal University, Kreml uramı 18, Kazan Republic of Tatarstan, Russian Federation, 420008
| | - Vladimir V Mazurenko
- Theoretical Physics and Applied Mathematics Department, Ural Federal University, Mira Street 19, Ekaterinburg 620002, Russia
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36
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Luo Y, Zeng C, Li B. Negative rectification and anomalous diffusion in nonlinear substrate potentials: Dynamical relaxation and information entropy. Phys Rev E 2022; 105:024204. [PMID: 35291109 DOI: 10.1103/physreve.105.024204] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2021] [Accepted: 01/12/2022] [Indexed: 06/14/2023]
Abstract
We numerically investigate the rectification of the probability flux and dynamical relaxation of particles moving in a system with and without noise. The system, driven by two external forces, consists of two substrate potentials that have identical shapes and different potential barriers with different friction coefficients. The deterministic model exhibits the perfect rectification of the probability flux, ratchet effect, and the dependence of the unpredictability of the dynamics on basin of attraction. In contrast, the stochastic model displays that the rectification is sensitive to the temperature and an external bias. They can induce kinetic phase transitions between no transport and a finite net transport. These transitions lead to an unexpected phenomenon, called negative rectification. The results are analyzed through the corresponding time-dependent diffusion coefficient, information entropy (IE), etc. At a low temperature, anomalous diffusions occur in system. For the occurrence of the flux in certain parameter regimes, the larger the diffusion is, the smaller the corresponding IE is, and vice versa. We also present the selected parameter regimes for the emergence of the rectification and negative rectification. Additionally, we study the rectification of the interacting particles in the system and find that the flux may depend on the coupling strength and the number of the interacting particles, and that collective motions occur for the forward flux. Our work provides not only a way of the rectification for the transport of various particles (e.g., ions, electrons, photons, phonons, molecules, DNA chains, nanoswimmers, dust particles, etc.) in physics, chemistry, biology, and material science, but also a design of various circuits.
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Affiliation(s)
- Yuhui Luo
- Faculty of Civil Engineering and Mechanics/Faculty of Science, Kunming University of Science and Technology, Kunming 650500, China
- School of Physics and Information Engineering, Zhaotong University, Zhaotong 657000, China
| | - Chunhua Zeng
- Faculty of Civil Engineering and Mechanics/Faculty of Science, Kunming University of Science and Technology, Kunming 650500, China
| | - Baowen Li
- Paul M. Rady Department of Mechanical Engineering and Department of Physics, University of Colorado, Boulder, Colorado 80309-0427, USA
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37
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Ettinger S, Dietrich CF, Mishra CK, Miksch C, Beller DA, Collings PJ, Yodh AG. Rods in a lyotropic chromonic liquid crystal: emergence of chirality, symmetry-breaking alignment, and caged angular diffusion. SOFT MATTER 2022; 18:487-495. [PMID: 34851348 DOI: 10.1039/d1sm01209f] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
In lyotropic chromonic liquid crystals (LCLCs), twist distortion of the nematic director costs much less energy than splay or bend distortion. This feature leads to novel mirror-symmetry breaking director configurations when the LCLCs are confined by interfaces or contain suspended particles. Spherical colloids in an aligned LCLC nematic phase, for example, induce chiral director perturbations ("twisted tails"). The asymmetry of rod-like particles in an aligned LCLC offer a richer set of possibilities due to their aspect ratio (α) and mean orientation angle (〈θ〉) between their long axis and the uniform far-field director. Here we report on the director configuration, equilibrium orientation, and angular diffusion of rod-like particles with planar anchoring suspended in an aligned LCLC. Video microscopy reveals, counterintuitively, that two-thirds of the rods have an angled equilibrium orientation (〈θ〉 ≠ 0) that decreases with increasing α, while only one-third of the rods are aligned (〈θ〉 = 0). Polarized optical video-microscopy and Landau-de Gennes numerical modeling demonstrate that the angled and aligned rods are accompanied by distinct chiral director configurations. Angled rods have a longitudinal mirror plane (LMP) parallel to their long axis and approximately parallel to the substrate walls. Aligned rods have a transverse and longitudinal mirror plane (TLMP), where the transverse mirror plane is perpendicular to the rod's long axis. Effectively, the small twist elastic constant of LCLCs promotes chiral director configurations that modify the natural tendency of rods to orient along the far-field director. Additional diffusion experiments confirm that rods are angularly confined with strength that depends on α.
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Affiliation(s)
- Sophie Ettinger
- Department of Physics and Astronomy, University of Pennsylvania, Philadelphia, PA, 19104, USA.
| | - Clarissa F Dietrich
- Institute of Physical Chemistry, University of Stuttgart, Pfaffenwaldring 55, 70569 Stuttgart, Germany
| | - Chandan K Mishra
- Discipline of Physics, Indian Institute of Technology (IIT) Gandhinagar, Palaj, Gandhinagar, Gujarat 382355, India
| | - Cornelia Miksch
- Max Planck Institute of Intelligent Systems, Heisenbergstr. 3, 70569 Stuttgart, Germany
| | - Daniel A Beller
- Department of Physics, University of California, Merced, CA, 95343, USA
| | - Peter J Collings
- Department of Physics and Astronomy, University of Pennsylvania, Philadelphia, PA, 19104, USA.
- Department of Physics and Astronomy, Swarthmore College, Swarthmore, PA, 19081, USA
| | - A G Yodh
- Department of Physics and Astronomy, University of Pennsylvania, Philadelphia, PA, 19104, USA.
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38
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Klett K, Cherstvy AG, Shin J, Sokolov IM, Metzler R. Non-Gaussian, transiently anomalous, and ergodic self-diffusion of flexible dumbbells in crowded two-dimensional environments: Coupled translational and rotational motions. Phys Rev E 2022; 104:064603. [PMID: 35030844 DOI: 10.1103/physreve.104.064603] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2021] [Accepted: 11/18/2021] [Indexed: 12/22/2022]
Abstract
We employ Langevin-dynamics simulations to unveil non-Brownian and non-Gaussian center-of-mass self-diffusion of massive flexible dumbbell-shaped particles in crowded two-dimensional solutions. We study the intradumbbell dynamics of the relative motion of the two constituent elastically coupled disks. Our main focus is on effects of the crowding fraction ϕ and of the particle structure on the diffusion characteristics. We evaluate the time-averaged mean-squared displacement (TAMSD), the displacement probability-density function (PDF), and the displacement autocorrelation function (ACF) of the dimers. For the TAMSD at highly crowded conditions of dumbbells, e.g., we observe a transition from the short-time ballistic behavior, via an intermediate subdiffusive regime, to long-time Brownian-like spreading dynamics. The crowded system of dimers exhibits two distinct diffusion regimes distinguished by the scaling exponent of the TAMSD, the dependence of the diffusivity on ϕ, and the features of the displacement-ACF. We attribute these regimes to a crowding-induced transition from viscous to viscoelastic diffusion upon growing ϕ. We also analyze the relative motion in the dimers, finding that larger ϕ suppress their vibrations and yield strongly non-Gaussian PDFs of rotational displacements. For the diffusion coefficients D(ϕ) of translational and rotational motion of the dumbbells an exponential decay with ϕ for weak and a power-law variation D(ϕ)∝(ϕ-ϕ^{★})^{2.4} for strong crowding is found. A comparison of simulation results with theoretical predictions for D(ϕ) is discussed and some relevant experimental systems are overviewed.
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Affiliation(s)
- Kolja Klett
- Institute of Physics & Astronomy, University of Potsdam, 14476 Potsdam-Golm, Germany
| | - Andrey G Cherstvy
- Institute of Physics & Astronomy, University of Potsdam, 14476 Potsdam-Golm, Germany.,Institut für Physik, Humboldt-Universität zu Berlin, Newtonstraße 15, 12489 Berlin, Germany
| | - Jaeoh Shin
- Department of Chemistry, Rice University, Houston, Texas 77005, USA.,Center for Theoretical Biological Physics, Rice University, Houston, Texas 77005, USA
| | - Igor M Sokolov
- Institut für Physik, Humboldt-Universität zu Berlin, Newtonstraße 15, 12489 Berlin, Germany.,IRIS Adlershof, Zum Großen Windkanal 6, 12489 Berlin, Germany
| | - Ralf Metzler
- Institute of Physics & Astronomy, University of Potsdam, 14476 Potsdam-Golm, Germany
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39
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Hadji H, Bouchemal K. Effect of micro- and nanoparticle shape on biological processes. J Control Release 2021; 342:93-110. [PMID: 34973308 DOI: 10.1016/j.jconrel.2021.12.032] [Citation(s) in RCA: 26] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2021] [Revised: 12/23/2021] [Accepted: 12/24/2021] [Indexed: 12/15/2022]
Abstract
In the drug delivery field, there is beyond doubt that the shape of micro- and nanoparticles (M&NPs) critically affects their biological fate. Herein, following an introduction describing recent technological advances for designing nonspherical M&NPs, we highlight the role of particle shape in cell capture, subcellular distribution, intracellular drug delivery, and cytotoxicity. Then, we discuss theoretical approaches for understanding the effect of particle shape on internalization by the cell membrane. Subsequently, recent advances on shape-dependent behaviors of M&NPs in the systemic circulation are detailed. In particular, the interaction of M&NPs with blood proteins, biodistribution, and circulation under flow conditions are analyzed. Finally, the hurdles and future directions for developing nonspherical M&NPs are underscored.
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Affiliation(s)
- Hicheme Hadji
- Université Paris-Saclay, Institut Galien Paris Saclay, CNRS UMR 8612, 92296 Châtenay-Malabry, France
| | - Kawthar Bouchemal
- Université Paris-Saclay, Institut Galien Paris Saclay, CNRS UMR 8612, 92296 Châtenay-Malabry, France.
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40
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Liu X, Moradi M, Bus T, Debije MG, Bon SAF, Heuts JPA, Schenning APHJ. Flower‐Like Colloidal Particles through Precipitation Polymerization of Redox‐Responsive Liquid Crystals. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202111521] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Xiaohong Liu
- Stimuli-Responsive Functional Materials and Devices Department of Chemical Engineering and Chemistry Eindhoven University of Technology Groene Loper 3 5612 AE Eindhoven The Netherlands
- Institute for Complex Molecular Systems Eindhoven University of Technology Groene Loper 3 5612 AE Eindhoven The Netherlands
| | - Mohammad‐Amin Moradi
- Institute for Complex Molecular Systems Eindhoven University of Technology Groene Loper 3 5612 AE Eindhoven The Netherlands
- Laboratory of Physical Chemistry Department of Chemical Engineering and Chemistry Eindhoven University of Technology Groene Loper 3 5612 AE Eindhoven The Netherlands
| | - Tom Bus
- Stimuli-Responsive Functional Materials and Devices Department of Chemical Engineering and Chemistry Eindhoven University of Technology Groene Loper 3 5612 AE Eindhoven The Netherlands
- Institute for Complex Molecular Systems Eindhoven University of Technology Groene Loper 3 5612 AE Eindhoven The Netherlands
| | - Michael G. Debije
- Stimuli-Responsive Functional Materials and Devices Department of Chemical Engineering and Chemistry Eindhoven University of Technology Groene Loper 3 5612 AE Eindhoven The Netherlands
| | - Stefan A. F. Bon
- Department of Chemistry The University of Warwick Coventry CV4 7AL UK
| | - Johan P. A. Heuts
- Institute for Complex Molecular Systems Eindhoven University of Technology Groene Loper 3 5612 AE Eindhoven The Netherlands
- Supramolecular Polymer Chemistry group Department of Chemical Engineering and Chemistry Eindhoven University of Technology Groene Loper 3 5612 AE Eindhoven The Netherlands
| | - Albert P. H. J. Schenning
- Stimuli-Responsive Functional Materials and Devices Department of Chemical Engineering and Chemistry Eindhoven University of Technology Groene Loper 3 5612 AE Eindhoven The Netherlands
- Institute for Complex Molecular Systems Eindhoven University of Technology Groene Loper 3 5612 AE Eindhoven The Netherlands
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41
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Diaz J, Pinna M, Zvelindovsky AV, Pagonabarraga I. Nematic Ordering of Anisotropic Nanoparticles in Block Copolymers. ADVANCED THEORY AND SIMULATIONS 2021. [DOI: 10.1002/adts.202100433] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Javier Diaz
- CECAM, Centre Européen de Calcul Atomique et Moléculaire École Polytechnique Fédérale de Lausanne 1015 Lausanne Switzerland
| | - Marco Pinna
- Centre for Computational Physics University of Lincoln Brayford Pool Lincoln LN6 7TS UK
| | | | - Ignacio Pagonabarraga
- CECAM, Centre Européen de Calcul Atomique et Moléculaire École Polytechnique Fédérale de Lausanne 1015 Lausanne Switzerland
- Departament de Física de la Matèria Condensada Universitat de Barcelona Barcelona 08028 Spain
- Universitat de Barcelona Institute of Complex Systems (UBICS) Universitat de Barcelona Barcelona 08028 Spain
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42
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Real-time visualization of morphology-dependent self-motion of hyaluronic acid nanomaterials in water. Int J Pharm 2021; 609:121172. [PMID: 34627996 DOI: 10.1016/j.ijpharm.2021.121172] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2021] [Revised: 09/15/2021] [Accepted: 10/04/2021] [Indexed: 12/24/2022]
Abstract
Drug delivery to target sites is often limited by inefficient particle transport through biological media. Herein, motion behaviors of spherical and nonspherical nanomaterials composed of hyaluronic acid were studied in water using real-time multiple particle tracking technology. The two types of nanomaterials have comparable surface compositions and surface potentials, and they have equivalent diameters. The analysis of nanomaterial trajectories revealed that particles with flattened morphology and a high aspect ratio, designated nanoplatelets, exhibited more linear trajectories and faster diffusion in water than nanospheres. Fitting the plots of mean square displacement vs. time scale suggests that nanoplatelets exhibited hyperdiffusive behavior, which is similar to the motion of living microorganisms. Furthermore, at 37 °C, the surface explored by a nanoplatelet was up to 33-fold higher than that explored by a nanosphere. This investigation on morphology-dependent self-motion of nanomaterials could have a significant impact on drug delivery applications by increasing particle transport through biological media.
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43
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Zhao BR, Li B, Shi X. Molecular simulation of the diffusion mechanism of nanorods in cross-linked networks. NANOSCALE 2021; 13:17404-17416. [PMID: 34647122 DOI: 10.1039/d1nr05368j] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
We study the diffusion of rod-shaped nanocarriers with different rigidities and aspect ratios in cross-linked networks using coarse-grained molecular dynamics (CGMD) simulations. The diffusivity of the nanorods increases with a reduction in the rigidities of the nanorods and network, as well as with an increasing aspect ratio with respect to the same volume fraction of the nanorods. The nanorods show an anisotropic diffusion pathway through translocating along their major axes at short time scales, and the anisotropy of diffusion decreases at long time scales. Meanwhile, the diffusion of the nanorods shows a sub-diffusion regime that deviates from Brownian motion in most cases due to the trapping of the nanorods in a cage composed of the network. The nanorod could hop when it escapes from the cage and the hopping behavior depends on the rigidities of both the nanorod and network, as well as the local network density. The rotational motion of the trapped nanorod also enhances the probability of hopping. Our results may help in the understanding of the microscopic mechanism for the diffusion of rod-shaped and other relevant nanocarriers, in a cross-linked network environment.
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Affiliation(s)
- Bo-Ran Zhao
- School of Chemical Engineering and Technology, Sun Yat-sen University, Zhuhai, 519082, China.
| | - Bin Li
- School of Chemical Engineering and Technology, Sun Yat-sen University, Zhuhai, 519082, China.
| | - Xinghua Shi
- Laboratory of Theoretical and Computational Nanoscience, CAS Center for Excellence in Nanoscience, National Center for Nanoscience and Technology, Chinese Academy of Sciences, Beijing, 100190, China.
- University of Chinese Academy of Sciences, No. 19A Yuquan Road, Beijing, 100049, China
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44
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Abakumov S, Deschaume O, Bartic C, Lang C, Korculanin O, Dhont JKG, Lettinga MP. Uncovering Log Jamming in Semidilute Suspensions of Quasi-Ideal Rods. Macromolecules 2021. [DOI: 10.1021/acs.macromol.1c00876] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Affiliation(s)
- Sergey Abakumov
- Laboratory for Molecular Imaging and Photonics, KU Leuven, B-3001 Leuven, Belgium
| | - Olivier Deschaume
- Laboratory for Soft Matter and Biophysics, KU Leuven, B-3001 Leuven, Belgium
| | - Carmen Bartic
- Laboratory for Soft Matter and Biophysics, KU Leuven, B-3001 Leuven, Belgium
| | - Christian Lang
- JCNS-4, Forschungzentrum Jülich, DE 85748 Jülich, Germany
| | | | | | - Minne Paul Lettinga
- Laboratory for Soft Matter and Biophysics, KU Leuven, B-3001 Leuven, Belgium
- IBI-4, Forschungzentrum Jülich, DE 52425 Jülich, Germany
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45
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Liu X, Moradi MA, Bus T, Debije MG, Bon SAF, Heuts JPA, Schenning APHJ. Flower-Like Colloidal Particles through Precipitation Polymerization of Redox-Responsive Liquid Crystals. Angew Chem Int Ed Engl 2021; 60:27026-27030. [PMID: 34672077 PMCID: PMC9298913 DOI: 10.1002/anie.202111521] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2021] [Indexed: 11/12/2022]
Abstract
We report on the synthesis of monodisperse, flower‐like, liquid crystalline (LC) polymer particles by precipitation polymerization of a LC mixture consisting of benzoic acid‐functionalized acrylates and disulfide‐functionalized diacrylates. Introduction of a minor amount of redox‐responsive disulfide‐functionalized diacrylates (≤10 wt %) induced the formation of flower‐like shapes. The shape of the particles can be tuned from flower‐ to disk‐like to spherical by elevating the polymerization temperature. The solvent environment also has a pronounced effect on the particle size. Time‐resolved TEM reveals that the final particle morphology was formed in the early stages of the polymerization and that subsequent polymerization resulted in continued particle growth without affecting the morphology. Finally, the degradation of the particles under reducing conditions was much faster for flower‐like particles than for spherical particles, likely a result of their higher surface‐to‐volume ratio.
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Affiliation(s)
- Xiaohong Liu
- Stimuli-Responsive Functional Materials and Devices, Department of Chemical Engineering and Chemistry, Eindhoven University of Technology, Groene Loper 3, 5612 AE, Eindhoven, The Netherlands.,Institute for Complex Molecular Systems, Eindhoven University of Technology, Groene Loper 3, 5612 AE, Eindhoven, The Netherlands
| | - Mohammad-Amin Moradi
- Institute for Complex Molecular Systems, Eindhoven University of Technology, Groene Loper 3, 5612 AE, Eindhoven, The Netherlands.,Laboratory of Physical Chemistry, Department of Chemical Engineering and Chemistry, Eindhoven University of Technology, Groene Loper 3, 5612 AE, Eindhoven, The Netherlands
| | - Tom Bus
- Stimuli-Responsive Functional Materials and Devices, Department of Chemical Engineering and Chemistry, Eindhoven University of Technology, Groene Loper 3, 5612 AE, Eindhoven, The Netherlands.,Institute for Complex Molecular Systems, Eindhoven University of Technology, Groene Loper 3, 5612 AE, Eindhoven, The Netherlands
| | - Michael G Debije
- Stimuli-Responsive Functional Materials and Devices, Department of Chemical Engineering and Chemistry, Eindhoven University of Technology, Groene Loper 3, 5612 AE, Eindhoven, The Netherlands
| | - Stefan A F Bon
- Department of Chemistry, The University of Warwick, Coventry, CV4 7AL, UK
| | - Johan P A Heuts
- Institute for Complex Molecular Systems, Eindhoven University of Technology, Groene Loper 3, 5612 AE, Eindhoven, The Netherlands.,Supramolecular Polymer Chemistry group, Department of Chemical Engineering and Chemistry, Eindhoven University of Technology, Groene Loper 3, 5612 AE, Eindhoven, The Netherlands
| | - Albert P H J Schenning
- Stimuli-Responsive Functional Materials and Devices, Department of Chemical Engineering and Chemistry, Eindhoven University of Technology, Groene Loper 3, 5612 AE, Eindhoven, The Netherlands.,Institute for Complex Molecular Systems, Eindhoven University of Technology, Groene Loper 3, 5612 AE, Eindhoven, The Netherlands
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46
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M MR, Pujala RK, Paladugu S, Dhara S. Interactions of charged microrods in chiral nematic liquid crystals. Phys Rev E 2021; 104:014706. [PMID: 34412267 DOI: 10.1103/physreve.104.014706] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2021] [Accepted: 07/02/2021] [Indexed: 11/07/2022]
Abstract
We study the pair interaction of charged silica microrods in chiral nematic liquid crystals and show that the microrods with homeotropic surface anchoring form a bound state due to the competing effect of electrostatic (Coulomb) and elastic interactions. The robustness of the bound state is demonstrated by applying external electrical and mechanical forces that perturbs their equilibrium position as well as orientation. In the bound state we have measured the correlated thermal fluctuations of the position, using two-particle cross-correlation spectroscopy that uncovers their hydrodynamic interaction. These findings reveal unexplored aspects of liquid-crystal dispersions which are important for understanding the assembly and dynamics of nano- and microparticles in chiral nematic liquid crystals.
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Affiliation(s)
- Muhammed Rasi M
- School of Physics, University of Hyderabad, Hyderabad 500046, India
| | - Ravi Kumar Pujala
- Department of Physics, Indian Institute of Science Education and Research, Tirupati, Andhra Pradesh 517507, India
| | - Sathyanarayana Paladugu
- Department of Physics, Indian Institute of Science Education and Research, Tirupati, Andhra Pradesh 517507, India
| | - Surajit Dhara
- School of Physics, University of Hyderabad, Hyderabad 500046, India
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47
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Mayer DB, Sarmiento-Gómez E, Escobedo-Sánchez MA, Segovia-Gutiérrez JP, Kurzthaler C, Egelhaaf SU, Franosch T. Two-dimensional Brownian motion of anisotropic dimers. Phys Rev E 2021; 104:014605. [PMID: 34412330 DOI: 10.1103/physreve.104.014605] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2021] [Accepted: 05/04/2021] [Indexed: 11/07/2022]
Abstract
We study the two-dimensional motion of colloidal dimers by single-particle tracking and compare the experimental observations obtained by bright-field microscopy to theoretical predictions for anisotropic diffusion. The comparison is based on the mean-square displacements in the laboratory and particle frame as well as generalizations of the self-intermediate scattering functions, which provide insights into the rotational dynamics of the dimer. The diffusional anisotropy leads to a measurable translational-rotational coupling that becomes most prominent by aligning the coordinate system with the initial orientation of the particles. In particular, we find a splitting of the time-dependent diffusion coefficients parallel and perpendicular to the long axis of the dimer which decays over the orientational relaxation time. Deviations of the self-intermediate scattering functions from pure exponential relaxation are small but can be resolved experimentally. The theoretical predictions and experimental results agree quantitatively.
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Affiliation(s)
- Daniel B Mayer
- Institut für Theoretische Physik, Universität Innsbruck, Technikerstraße 25/2, A-6020 Innsbruck, Austria
| | - Erick Sarmiento-Gómez
- Condensed Matter Physics Laboratory, Heinrich Heine University, Universitätsstraße 1, D-40225 Düsseldorf, Germany.,División de Ciencias e Ingenierias, Departamento de Ingenieria Física, Universidad de Guanajuato, León, Mexico
| | - Manuel A Escobedo-Sánchez
- Condensed Matter Physics Laboratory, Heinrich Heine University, Universitätsstraße 1, D-40225 Düsseldorf, Germany
| | - Juan Pablo Segovia-Gutiérrez
- Condensed Matter Physics Laboratory, Heinrich Heine University, Universitätsstraße 1, D-40225 Düsseldorf, Germany
| | - Christina Kurzthaler
- Department of Mechanical and Aerospace Engineering, Princeton University, Princeton, New Jersey 08544, USA
| | - Stefan U Egelhaaf
- Condensed Matter Physics Laboratory, Heinrich Heine University, Universitätsstraße 1, D-40225 Düsseldorf, Germany
| | - Thomas Franosch
- Institut für Theoretische Physik, Universität Innsbruck, Technikerstraße 25/2, A-6020 Innsbruck, Austria
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48
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Abstract
Granular particles exhibit rich collective behaviors on vibration beds, but the motion of an isolated particle is not well understood even for uniform particles with a simple shape such as disks or spheres. Here we measured the motion of a single disk confined to a quasi-two-dimensional horizontal box on a vertically vibrating stage. The translational displacements obey compressed exponential distributions whose exponent [Formula: see text] increases with the frequency, while the rotational displacements exhibit unimodal distributions at low frequencies and bimodal distributions at high frequencies. During short time intervals, the translational displacements are subdiffusive and negatively correlated, while the rotational displacements are superdiffusive and positively correlated. After prolonged periods, the rotational displacements become diffusive and their correlations decay to zero. Both the rotational and the translational displacements exhibit white noise at low frequencies, and blue noise for translational motions and Brownian noise for rotational motions at high frequencies. The translational kinetic energy obeys Boltzmann distribution while the rotational kinetic energy deviates from it. Most energy is distributed in translational motions at low frequencies and in rotational motions at high frequencies, which violates the equipartition theorem. Translational and rotational motions are not correlated. These experimental results show that the random diffusion of such driven particles is distinct from thermal motion in both the translational and rotational degrees of freedom, which poses new challenges to theory. The results cast new light on the motion of individual particles and the collective motion of driven granular particles.
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49
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Wang J, O’Connor TC, Grest GS, Zheng Y, Rubinstein M, Ge T. Diffusion of Thin Nanorods in Polymer Melts. Macromolecules 2021; 54:7051-7059. [DOI: 10.1021/acs.macromol.1c00989] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Affiliation(s)
- Jiuling Wang
- Department of Chemistry and Biochemistry, University of South Carolina, Columbia, South Carolina 29208, United States
| | - Thomas C. O’Connor
- Sandia National Laboratories, Albuquerque, New Mexico 87185, United States
| | - Gary S. Grest
- Sandia National Laboratories, Albuquerque, New Mexico 87185, United States
| | - Yitong Zheng
- Hongyi Honor School, Wuhan University, Wuhan, Hubei 430072, China
- Department of Physics, School of Physics and Technology, Wuhan University, Wuhan, Hubei 430072, China
| | - Michael Rubinstein
- Thomas Lord Department of Mechanical Engineering and Materials Science, Departments of Biomedical Engineering, Chemistry, and Physics, Duke University, Durham, North Carolina 27708, United States
| | - Ting Ge
- Department of Chemistry and Biochemistry, University of South Carolina, Columbia, South Carolina 29208, United States
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50
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Javanainen M, Martinez-Seara H, Kelly CV, Jungwirth P, Fábián B. Anisotropic diffusion of membrane proteins at experimental timescales. J Chem Phys 2021; 155:015102. [PMID: 34241397 DOI: 10.1063/5.0054973] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022] Open
Abstract
Single-particle tracking (SPT) experiments of lipids and membrane proteins provide a wealth of information about the properties of biomembranes. Careful analysis of SPT trajectories can reveal deviations from ideal Brownian behavior. Among others, this includes confinement effects and anomalous diffusion, which are manifestations of both the nanoscale structure of the underlying membrane and the structure of the diffuser. With the rapid increase in temporal and spatial resolution of experimental methods, a new aspect of the motion of the particle, namely, anisotropic diffusion, might become relevant. This aspect that so far received only little attention is the anisotropy of the diffusive motion and may soon provide an additional proxy to the structure and topology of biomembranes. Unfortunately, the theoretical framework for detecting and interpreting anisotropy effects is currently scattered and incomplete. Here, we provide a computational method to evaluate the degree of anisotropy directly from molecular dynamics simulations and also point out a way to compare the obtained results with those available from SPT experiments. In order to probe the effects of anisotropic diffusion, we performed coarse-grained molecular dynamics simulations of peripheral and integral membrane proteins in flat and curved bilayers. In agreement with the theoretical basis, our computational results indicate that anisotropy can persist up to the rotational relaxation time [τ=(2Dr)-1], after which isotropic diffusion is observed. Moreover, the underlying topology of the membrane bilayer can couple with the geometry of the particle, thus extending the spatiotemporal domain over which this type of motion can be detected.
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Affiliation(s)
- Matti Javanainen
- Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Flemingovo nám. 542/2, 160 00 Prague 6, Czech Republic
| | - Hector Martinez-Seara
- Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Flemingovo nám. 542/2, 160 00 Prague 6, Czech Republic
| | - Christopher V Kelly
- Department of Physics and Astronomy, Wayne State University, 666 W Hancock Street, Detroit, Michigan 48201, USA
| | - Pavel Jungwirth
- Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Flemingovo nám. 542/2, 160 00 Prague 6, Czech Republic
| | - Balázs Fábián
- Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Flemingovo nám. 542/2, 160 00 Prague 6, Czech Republic
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