1
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Roy P, Sardjan AS, Browne WR, Feringa BL, Meech SR. Excited State Dynamics in Unidirectional Photochemical Molecular Motors. J Am Chem Soc 2024; 146:12255-12270. [PMID: 38656968 PMCID: PMC11082934 DOI: 10.1021/jacs.4c01019] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2024] [Revised: 04/05/2024] [Accepted: 04/08/2024] [Indexed: 04/26/2024]
Abstract
Unidirectional photochemically driven molecular motors (PMMs) convert the energy of absorbed light into continuous rotational motion. As such they are key components in the design of molecular machines. The prototypical and most widely employed class of PMMs is the overcrowded alkenes, where rotational motion is driven by successive photoisomerization and thermal helix inversion steps. The efficiency of such PMMs depends upon the speed of rotation, determined by the rate of ground state thermal helix inversion, and the quantum yield of photoisomerization, which is dependent on the excited state energy landscape. The former has been optimized by synthetic modification across three generations of overcrowded alkene PMMs. These improvements have often been at the expense of photoisomerization yield, where there remains room for improvement. In this perspective we review the application of ultrafast spectroscopy to characterize the excited state dynamics in PMMs. These measurements lead to a general mechanism for all generations of PMMs, involving subpicosecond decay of a Franck-Condon excited state to populate a dark excited state which decays within picoseconds via conical intersections with the electronic ground state. The model is discussed in the context of excited state dynamics calculations. Studies of PMM photochemical dynamics as a function of solvent suggest exploitation of intramolecular charge transfer and solvent polarity as a route to controlling photoisomerization yield. A test of these ideas for a first generation motor reveals a high degree of solvent control over isomerization yield. These results suggest a pathway to fine control over the performance of future PMMs.
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Affiliation(s)
- Palas Roy
- School
of Chemistry, University of East Anglia, Norwich NR4 7TJ, U.K.
- School
of Basic Sciences, Indian Institute of Technology
Bhubaneswar, Bhubaneswar, Odisha 752050, India
| | - Andy S. Sardjan
- Molecular
Inorganic Chemistry, Stratingh Institute for Chemistry, University of Groningen, 9747AG Groningen, The Netherlands
| | - Wesley R. Browne
- Molecular
Inorganic Chemistry, Stratingh Institute for Chemistry, University of Groningen, 9747AG Groningen, The Netherlands
| | - Ben L. Feringa
- Centre
for Systems Chemistry, Stratingh Institute for Chemistry, University of Groningen, 9747AG Groningen, The Netherlands
| | - Stephen R. Meech
- School
of Chemistry, University of East Anglia, Norwich NR4 7TJ, U.K.
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2
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Petropoulos V, Rukin PS, Quintela F, Russo M, Moretti L, Moore A, Moore T, Gust D, Prezzi D, Scholes GD, Molinari E, Cerullo G, Troiani F, Rozzi CA, Maiuri M. Vibronic Coupling Drives the Ultrafast Internal Conversion in a Functionalized Free-Base Porphyrin. J Phys Chem Lett 2024; 15:4461-4467. [PMID: 38630018 DOI: 10.1021/acs.jpclett.4c00372] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/26/2024]
Abstract
Internal conversion (IC) is a common radiationless transition in polyatomic molecules. Theory predicts that molecular vibrations assist IC between excited states, and ultrafast experiments can provide insight into their structure-function relationship. Here we elucidate the dynamics of the vibrational modes driving the IC process within the Q band of a functionalized porphyrin molecule. Through a combination of ultrafast multidimensional spectroscopies and theoretical modeling, we observe a 60 fs Qy-Qx IC and demonstrate that it is driven by the interplay among multiple high-frequency modes. Notably, we identify 1510 cm-1 as the leading tuning mode that brings the porphyrin to an optimal geometry for energy surface crossing. By employing coherent wave packet analysis, we highlight a set of short-lived vibrations (1200-1400 cm-1), promoting the IC within ≈60 fs. Furthermore, we identify one coupling mode (1350 cm-1) that is responsible for vibronic mixing within the Q states. Our findings indicate that porphyrin-core functionalization modulates IC effectively, offering new opportunities in photocatalysis and optoelectronics.
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Affiliation(s)
- Vasilis Petropoulos
- Dipartimento di Fisica, Politecnico di Milano, Piazza Leonardo da Vinci 32, 20133 Milano, Italy
| | - Pavel S Rukin
- CNR - Istituto Nanoscienze, Via Campi 213A, I-41125 Modena, Italy
| | - Frank Quintela
- Dipartimento di Scienze Fisiche, Informatiche e Matematiche, Università degli Studi di Modena e Reggio Emilia, via G. Campi 213A, I-41125 Modena, Italy
| | - Mattia Russo
- Dipartimento di Fisica, Politecnico di Milano, Piazza Leonardo da Vinci 32, 20133 Milano, Italy
| | - Luca Moretti
- Dipartimento di Fisica, Politecnico di Milano, Piazza Leonardo da Vinci 32, 20133 Milano, Italy
| | - Ana Moore
- School of Molecular Sciences, Arizona State University, Tempe, Arizona 85287, United States
| | - Thomas Moore
- School of Molecular Sciences, Arizona State University, Tempe, Arizona 85287, United States
| | - Devens Gust
- School of Molecular Sciences, Arizona State University, Tempe, Arizona 85287, United States
| | - Deborah Prezzi
- CNR - Istituto Nanoscienze, Via Campi 213A, I-41125 Modena, Italy
| | - Gregory D Scholes
- Department of Chemistry, Princeton University, Princeton, New Jersey 08540, United States
| | - Elisa Molinari
- CNR - Istituto Nanoscienze, Via Campi 213A, I-41125 Modena, Italy
- Dipartimento di Scienze Fisiche, Informatiche e Matematiche, Università degli Studi di Modena e Reggio Emilia, via G. Campi 213A, I-41125 Modena, Italy
| | - Giulio Cerullo
- Dipartimento di Fisica, Politecnico di Milano, Piazza Leonardo da Vinci 32, 20133 Milano, Italy
| | - Filippo Troiani
- CNR - Istituto Nanoscienze, Via Campi 213A, I-41125 Modena, Italy
| | - Carlo A Rozzi
- CNR - Istituto Nanoscienze, Via Campi 213A, I-41125 Modena, Italy
| | - Margherita Maiuri
- Dipartimento di Fisica, Politecnico di Milano, Piazza Leonardo da Vinci 32, 20133 Milano, Italy
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3
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Perrett S, Chatrchyan V, Buckup T, van Thor JJ. Application of density matrix Wigner transforms for ultrafast macromolecular and chemical x-ray crystallography. J Chem Phys 2024; 160:100901. [PMID: 38456527 DOI: 10.1063/5.0188888] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2023] [Accepted: 02/12/2024] [Indexed: 03/09/2024] Open
Abstract
Time-Resolved Serial Femtosecond Crystallography (TR-SFX) conducted at X-ray Free Electron Lasers (XFELs) has become a powerful tool for capturing macromolecular structural movies of light-initiated processes. As the capabilities of XFELs advance, we anticipate that a new range of coherent control and structural Raman measurements will become achievable. Shorter optical and x-ray pulse durations and increasingly more exotic pulse regimes are becoming available at free electron lasers. Moreover, with high repetition enabled by the superconducting technology of European XFEL (EuXFEL) and Linac Coherent Light Source (LCLS-II) , it will be possible to improve the signal-to-noise ratio of the light-induced differences, allowing for the observation of vibronic motion on the sub-Angstrom level. To predict and assign this coherent motion, which is measurable with a structural technique, new theoretical approaches must be developed. In this paper, we present a theoretical density matrix approach to model the various population and coherent dynamics of a system, which considers molecular system parameters and excitation conditions. We emphasize the use of the Wigner transform of the time-dependent density matrix, which provides a phase space representation that can be directly compared to the experimental positional displacements measured in a TR-SFX experiment. Here, we extend the results from simple models to include more realistic schemes that include large relaxation terms. We explore a variety of pulse schemes using multiple model systems using realistic parameters. An open-source software package is provided to perform the density matrix simulation and Wigner transformations. The open-source software allows us to define any arbitrary level schemes as well as any arbitrary electric field in the interaction Hamiltonian.
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Affiliation(s)
- Samuel Perrett
- Department of Life Sciences, Faculty of Natural Sciences, Imperial College London, London, United Kingdom
| | - Viktoria Chatrchyan
- Physikalisch Chemisches Institut, Ruprecht-Karls Universität, D-69120 Heidelberg, Germany
| | - Tiago Buckup
- Physikalisch Chemisches Institut, Ruprecht-Karls Universität, D-69120 Heidelberg, Germany
| | - Jasper J van Thor
- Department of Life Sciences, Faculty of Natural Sciences, Imperial College London, London, United Kingdom
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4
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Savchenko EV, Kostjukov VV. 4a,4b-Dihydrophenanthrene → cis-stilbene photoconversion: TD-DFT/DFT study. J Mol Model 2024; 30:24. [PMID: 38183494 DOI: 10.1007/s00894-023-05824-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2023] [Accepted: 12/28/2023] [Indexed: 01/08/2024]
Abstract
CONTEXT DHP → CS photoconversion was analyzed in terms of electron density redistribution for the first time. The following explanation for the non-recovery of the C4a-C4b bond upon CS relaxation is proposed: during this process, the Coulomb repulsion energy between these pairs of atoms increases by almost one and a half times, and their bonding by an electron at LUMO is insufficient to recover the C4a-C4b bond. According to calculations, upon CS relaxation, the linker connecting the benzene rings undergoes significant structural changes. In this case, the distance between the C4a and C4b atoms increases from 3.00 Å to 3.28 Å. Calculations showed that the C4a-C4b vibration of the DHP bond has a very low intensity. Therefore, thermal motion does not contribute to the rupture of this bond. METHODS All calculations were performed using the Gaussian16 software package at the B3LYP/6-311 + + G(d,p)/IEFPCM theory level. B3LYP was the only hybrid functional supported by Gaussian16, which ensured the cleavage of the C4a-C4b bond of DHP while optimizing its S1 excited state. A quantitative description of the redistribution of electron density in the studied conformers was carried out using the analysis of the NPA of atomic charges. Cyclohexane was used as an implicitly specified non-polar solvent. Visualization of molecular orbitals, and electron densities, as well as plotting of calculated IR spectra, were performed using the Gaussview6 software package.
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Affiliation(s)
- Elizaveta V Savchenko
- Sevastopol State University, Universitetskaya Str., 33, Sevastopol, 299053, Crimea, Ukraine
| | - Victor V Kostjukov
- Sevastopol State University, Universitetskaya Str., 33, Sevastopol, 299053, Crimea, Ukraine.
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5
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Kuramochi H, Tsutsumi T, Saita K, Wei Z, Osawa M, Kumar P, Liu L, Takeuchi S, Taketsugu T, Tahara T. Ultrafast Raman observation of the perpendicular intermediate phantom state of stilbene photoisomerization. Nat Chem 2024; 16:22-27. [PMID: 38182762 DOI: 10.1038/s41557-023-01397-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2023] [Accepted: 11/13/2023] [Indexed: 01/07/2024]
Abstract
Trans-cis photoisomerization is generally described by a model in which the reaction proceeds via a common intermediate having a perpendicular conformation around the rotating bond, irrespective of from which isomer the reaction starts. Nevertheless, such an intermediate has yet to be identified unambiguously, and it is often called the 'phantom' state. Here we present the structural identification of the common, perpendicular intermediate of stilbene photoisomerization using ultrafast Raman spectroscopy. Our results reveal ultrafast birth and decay of an identical, short-lived transient that exhibits a vibrational signature characteristic of the perpendicular state upon photoexcitation of the trans and cis forms. In combination with ab initio molecular dynamics simulations, it is shown that the photoexcited trans and cis forms are funnelled off to the ground state through the same, perpendicular intermediate.
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Affiliation(s)
- Hikaru Kuramochi
- Molecular Spectroscopy Laboratory, RIKEN, Wako, Japan
- Ultrafast Spectroscopy Research Team, RIKEN Center for Advanced Photonics (RAP), Wako, Japan
- JST, PRESTO, Japan Science and Technology Agency, Kawaguchi, Japan
- Research Center of Integrative Molecular Systems (CIMoS), Institute for Molecular Science, National Institutes of Natural Sciences, Okazaki, Japan
| | - Takuro Tsutsumi
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo, Japan
| | - Kenichiro Saita
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo, Japan
| | - Zhengrong Wei
- Molecular Spectroscopy Laboratory, RIKEN, Wako, Japan
- Department of Physics, Hubei University, Wuhan, China
| | - Masahisa Osawa
- Department of Applied Chemistry, Nippon Institute of Technology, Miyashiro-Machi, Japan
| | - Pardeep Kumar
- Molecular Spectroscopy Laboratory, RIKEN, Wako, Japan
- Ultrafast Spectroscopy Research Team, RIKEN Center for Advanced Photonics (RAP), Wako, Japan
- Spiden AG, Pfäffikon, Switzerland
| | - Li Liu
- Molecular Spectroscopy Laboratory, RIKEN, Wako, Japan
- Laboratory of Soft Matter Physics, Institute of Physics, Chinese Academy of Sciences, Beijing, China
| | - Satoshi Takeuchi
- Molecular Spectroscopy Laboratory, RIKEN, Wako, Japan
- Ultrafast Spectroscopy Research Team, RIKEN Center for Advanced Photonics (RAP), Wako, Japan
- Graduate School of Science, University of Hyogo, Kamigori, Ako, Japan
| | - Tetsuya Taketsugu
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo, Japan
- Institute for Chemical Reaction Design and Discovery (WPI-ICReDD), Hokkaido University, Sapporo, Japan
| | - Tahei Tahara
- Molecular Spectroscopy Laboratory, RIKEN, Wako, Japan.
- Ultrafast Spectroscopy Research Team, RIKEN Center for Advanced Photonics (RAP), Wako, Japan.
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6
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Karpicz R, Kareivaite G, Macernis M, Abramavicius D, Valkunas L. Two phases of trans-stilbene in a polystyrene matrix. Phys Chem Chem Phys 2023; 25:21183-21190. [PMID: 37531215 DOI: 10.1039/d3cp03015f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/03/2023]
Abstract
Variability in the spectral properties of solid conformations of stilbene under various external conditions still remains obscure. The photophysical properties of trans-stilbene solution in solid polystyrene glass have been studied by absorption and time-resolved fluorescence. Concentration-induced quenching has been observed for small concentrations of stilbene. At large concentrations, the spectroscopic characteristics become split between the two phases of the sample: single-molecule properties are responsible for absorption, while the micro-crystalline phase dominates in fluorescence. Ab initio and molecular dynamics analyses suggest permanent twisting of the stilbene molecular structure upon crystallization, which supports spectroscopic phase separation.
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Affiliation(s)
- Renata Karpicz
- Center for Physical Sciences and Technology, Saulėtekio av. 3, Vilnius, Lithuania
| | - Gabriele Kareivaite
- Center for Physical Sciences and Technology, Saulėtekio av. 3, Vilnius, Lithuania
| | - Mindaugas Macernis
- Institute of Chemical Physics, Faculty of Physics, Vilnius University, Saulėtekio av. 3, Vilnius, Lithuania.
| | - Darius Abramavicius
- Institute of Chemical Physics, Faculty of Physics, Vilnius University, Saulėtekio av. 3, Vilnius, Lithuania.
| | - Leonas Valkunas
- Center for Physical Sciences and Technology, Saulėtekio av. 3, Vilnius, Lithuania
- Institute of Chemical Physics, Faculty of Physics, Vilnius University, Saulėtekio av. 3, Vilnius, Lithuania.
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7
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Yoneda Y, Kuramochi H. Rapid-Scan Resonant Two-Dimensional Impulsive Stimulated Raman Spectroscopy of Excited States. J Phys Chem A 2023. [PMID: 37289973 DOI: 10.1021/acs.jpca.3c02489] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Photochemical reactions occur in the electronically excited state, which is effectively represented by a multidimensional potential energy surface (PES) with a vast degree of freedom of nuclear coordinates. The elucidation of the intricate shape of the PES constitutes an important topic in the field of photochemistry and has long been studied both experimentally and theoretically. Recently, fully time-domain resonant two-dimensional Raman spectroscopy has emerged as a potentially powerful tool to provide unique information about the coupling between vibrational manifolds in the excited state. However, the wide application of this technique has been significantly hampered by the technical difficulties associated with experimental implementation and remains challenging. Herein, we demonstrate time-domain resonant two-dimensional impulsive stimulated Raman spectroscopy (2D-ISRS) of excited states using sub-10 fs pulses based on the rapid scan of the time delay, which facilitates the efficient collection of time-domain vibrational signals with high sensitivity. As a proof-of-principle experiment, we performed 2D-ISRS of 6,13-bis(triisopropylsilylethynyl)pentacene (TIPS-pentacene) in solution. Through 2D Fourier transformation of the high-quality time-time oscillatory signal, we obtained a 2D frequency-frequency correlation map of excited-state TIPS-pentacene in the broad frequency window of 0-2000 cm-1. The data clearly resolve a number of cross peaks that signify the correlations among excited-state vibrational manifolds. The high capability of the rapid-scan-based 2D-ISRS spectrometer presented in this study enables the systematic investigation of various photochemical reaction systems, thereby further promoting the understanding and applications of this new multidimensional spectroscopy.
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Affiliation(s)
- Yusuke Yoneda
- Research Center of Integrative Molecular Systems (CIMoS), Institute for Molecular Science, National Institutes of Natural Sciences, 38 Nishigo-Naka, Myodaiji, Okazaki 444-8585, Japan
- Graduate Institute for Advanced Studies, SOKENDAI, 38 Nishigo-Naka, Myodaiji, Okazaki 444-8585, Japan
| | - Hikaru Kuramochi
- Research Center of Integrative Molecular Systems (CIMoS), Institute for Molecular Science, National Institutes of Natural Sciences, 38 Nishigo-Naka, Myodaiji, Okazaki 444-8585, Japan
- Graduate Institute for Advanced Studies, SOKENDAI, 38 Nishigo-Naka, Myodaiji, Okazaki 444-8585, Japan
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8
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Kumar P, Kuramochi H, Takeuchi S, Tahara T. Photoexcited Plasmon-Driven Ultrafast Dynamics of the Adsorbate Probed by Femtosecond Time-Resolved Surface-Enhanced Time-Domain Raman Spectroscopy. J Phys Chem Lett 2023; 14:2845-2853. [PMID: 36916655 PMCID: PMC10042161 DOI: 10.1021/acs.jpclett.2c03813] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2022] [Accepted: 02/21/2023] [Indexed: 06/18/2023]
Abstract
Metal nanoparticles have high potential in light-harvesting applications by transferring absorbed photon energy to the adsorbates. However, photoexcited plasmon-driven ultrafast dynamics of the adsorbate on metal nanoparticles have not been clearly understood. We studied ultrafast plasmon-driven processes of trans-1,2-bis(4-pyridyl)ethylene (BPE) adsorbed on gold nanoparticle assemblies (GNAs) using time-resolved surface-enhanced impulsive stimulated Raman spectroscopy (TR-SE-ISRS). After photoexciting the localized surface plasmon resonance (LSPR) band of the GNAs, we measured femtosecond time-resolved surface-enhanced Raman spectra of the adsorbate, which exhibited transient bleach in the Raman signal and following biphasic recovery that proceeds on the time scale of a few tens of picoseconds. The TR-SE-ISRS data were analyzed with singular value decomposition, and the obtained species-associated Raman spectra indicated that photoexcitation of the LSPR band alters chemical interaction between BPE and the GNAs on an ultrafast time scale; initial steady-state BPE is recovered through a precursor state that has weaker interaction with the GNAs.
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Affiliation(s)
- Pardeep Kumar
- Molecular
Spectroscopy Laboratory, RIKEN, 2-1 Hirosawa, Wako 351-0198, Japan
- Ultrafast
Spectroscopy Research Team, RIKEN Center
for Advanced Photonics (RAP), 2-1 Hirosawa, Wako 351-0198, Japan
| | - Hikaru Kuramochi
- Molecular
Spectroscopy Laboratory, RIKEN, 2-1 Hirosawa, Wako 351-0198, Japan
- Ultrafast
Spectroscopy Research Team, RIKEN Center
for Advanced Photonics (RAP), 2-1 Hirosawa, Wako 351-0198, Japan
| | - Satoshi Takeuchi
- Molecular
Spectroscopy Laboratory, RIKEN, 2-1 Hirosawa, Wako 351-0198, Japan
- Ultrafast
Spectroscopy Research Team, RIKEN Center
for Advanced Photonics (RAP), 2-1 Hirosawa, Wako 351-0198, Japan
| | - Tahei Tahara
- Molecular
Spectroscopy Laboratory, RIKEN, 2-1 Hirosawa, Wako 351-0198, Japan
- Ultrafast
Spectroscopy Research Team, RIKEN Center
for Advanced Photonics (RAP), 2-1 Hirosawa, Wako 351-0198, Japan
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9
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Karashima S, Miao X, Kanayama A, Yamamoto YI, Nishitani J, Kavka N, Mitric R, Suzuki T. Ultrafast Ring Closure Reaction of Gaseous cis-Stilbene from S 1(ππ*). J Am Chem Soc 2023; 145:3283-3288. [PMID: 36745770 DOI: 10.1021/jacs.2c12266] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
cis-Stilbene (cis-St) is a well-known benchmark system for cis-trans photoisomerization. cis-St also produces 4a,4b-dihydrophenanthrene (DHP) in solution with a quantum yield of less than 0.19. The ring closure reaction, however, has never been identified for gaseous cis-St, and a recent computational simulation predicted the quantum yield of DHP to be only 0.04. In the present study, we identified an ultrafast ring closure reaction of gaseous cis-St for the first time using extreme ultraviolet time-resolved photoelectron spectroscopy. Surface hopping trajectory calculations at the SA3-XMS-CASPT2(2,2) level of theory reproduce the features of the observed time-resolved photoelectron spectra and predict the cis-St:DHP:trans-St branching ratio to be 0.55:0.41:0.04, in contrast with previous estimates. The results indicate that photoexcited cis-St favors ring closure over cis-trans isomerization under the isolated condition.
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Affiliation(s)
- Shutaro Karashima
- Department of Chemistry, Graduate School of Science, Kyoto University, Kitashirakawa-Oiwakecho, Sakyo-ku, Kyoto 606-8502, Japan
| | - Xincheng Miao
- Institut für Physikalische und Theoretische Chemie, Universität Würzburg, Emil-Fischer-Str. 42, 97074 Würzburg, Germany
| | - Akio Kanayama
- Department of Chemistry, Graduate School of Science, Kyoto University, Kitashirakawa-Oiwakecho, Sakyo-ku, Kyoto 606-8502, Japan
| | - Yo-Ichi Yamamoto
- Department of Chemistry, Graduate School of Science, Kyoto University, Kitashirakawa-Oiwakecho, Sakyo-ku, Kyoto 606-8502, Japan
| | - Junichi Nishitani
- Department of Chemistry, Graduate School of Science, Kyoto University, Kitashirakawa-Oiwakecho, Sakyo-ku, Kyoto 606-8502, Japan
| | - Nikita Kavka
- Institut für Physikalische und Theoretische Chemie, Universität Würzburg, Emil-Fischer-Str. 42, 97074 Würzburg, Germany
| | - Roland Mitric
- Institut für Physikalische und Theoretische Chemie, Universität Würzburg, Emil-Fischer-Str. 42, 97074 Würzburg, Germany
| | - Toshinori Suzuki
- Department of Chemistry, Graduate School of Science, Kyoto University, Kitashirakawa-Oiwakecho, Sakyo-ku, Kyoto 606-8502, Japan
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10
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Agati M, Fanetti S, Bini R. Pressure induced modification of the electronic properties of stilbene by two-photon spectroscopy. J Chem Phys 2023; 158:034505. [PMID: 36681651 DOI: 10.1063/5.0133610] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022] Open
Abstract
Carbon nanothreads are the most exciting carbon based nanomaterials recently discovered. Obtained by compressing aromatics around 20 GPa, they are characterized by potentially exceptional mechanical properties. The reaction mechanisms have been partly elucidated through computational studies and x-ray diffraction experiments. However, in all these studies, the electronic modifications to which the molecule is subjected with increasing pressure are neglected as also if, and to which extent, the electronic excited states are involved in the high-pressure reactivity. In fact, the pressure increase induces remarkable changes in the electronic properties of molecular crystals, which are often directly related to the reaction's onset and path. We report the pressure evolution of the two-photon induced emission spectrum of crystalline stilbene, the archetype of a class of molecules from which double-core nanothreads are obtained, with the twofold purpose of gaining insight into the reaction mechanism and monitoring if the structural changes observed in x-ray diffraction studies have a detectable counterpart in the electronic properties of the system. The freezing of the spectral diffusion observed on rising pressure is ascribed to a hampered conformational rearrangement because of the larger stiffness of the local environment. The transition to the high pressure phase where the nanothreads form is revealed by the slope change of the pressure shift of all spectral components, while the progressive intensification with pressure of the 0-0 transition suggests a strengthening of the ethylenic bond favoring the charge delocalization on the benzene moieties, which is likely the trigger of the chemical instability.
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Affiliation(s)
- M Agati
- LENS, European Laboratory for Non-linear Spectroscopy, Via N. Carrara 1, Sesto Fiorentino, I-50019 Firenze, Italy
| | - S Fanetti
- LENS, European Laboratory for Non-linear Spectroscopy, Via N. Carrara 1, Sesto Fiorentino, I-50019 Firenze, Italy
| | - R Bini
- LENS, European Laboratory for Non-linear Spectroscopy, Via N. Carrara 1, Sesto Fiorentino, I-50019 Firenze, Italy
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11
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de la Hoz Tomás M, Yamaguchi M, Cohen B, Hisaki I, Douhal A. Deciphering the ultrafast dynamics of a new tetraphenylethylene derivative in solutions: charge separation, phenyl ring rotation and CC bond twisting. Phys Chem Chem Phys 2023; 25:1755-1767. [PMID: 36594826 DOI: 10.1039/d2cp05220b] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Tetraphenylethylene (TPE) derivatives are one of the fundamental units for developing aggregation induced emission (AIE) scaffolds. However, the underlying mechanisms implicated in the relaxation of the excited TPE remain a topic of ongoing discussion, while the effect of bulky substituents on its photobehaviour is still under scrutiny. Here, we report a detailed study of the photophysical properties of a new symmetrical and bulky TPE derivative with terphenyl groups (TTECOOBu) in solvents of different polarities and viscosities. Using femto- to nanosecond (fs-ns) time-resolved absorption and emission techniques, we elucidated the role of the phenyl group rotations and core ethylene bond twisting in its behaviour. We demonstrate that TTECOOBu in DCM solutions undergoes a 600 fs charge separation along the ethylene bond leading to a resonance structure with a lifetime of ∼1 ns. The latter relaxes via two consecutive events: a twisting of the ethylene bond (∼ 9 ps) and a rotation of the phenyl rings (∼ 30 ps) leading to conformationally-relaxed species with a largely Stokes-shifted emission (∼ 12 500 cm-1). The formation of the red-emitting species clearly depends on the solvent viscosity and rigidity of the medium. Contrary to the photobehavior in the highly viscous triacetin or rigid polymer matrix of PMMA, a reversible mechanism was observed in DCM and DMF solutions. These results provide new findings on the ultrafast mechanisms of excited TPE derivatives and should help in the development of new molecular rotors with interesting AIE properties for photonic applications.
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Affiliation(s)
- Mario de la Hoz Tomás
- Departamento de Química Física, Facultad de Ciencias Ambientales y Bioquímica, and INAMOL, Universidad de Castilla-La Mancha, Avenida Carlos III, S/N, 45071 Toledo, Spain.
| | - Mao Yamaguchi
- Graduate School of Engineering Science, Osaka University, 1-3 Machikaneyama, Toyonaka, Osaka 560-8531, Japan.
| | - Boiko Cohen
- Departamento de Química Física, Facultad de Ciencias Ambientales y Bioquímica, and INAMOL, Universidad de Castilla-La Mancha, Avenida Carlos III, S/N, 45071 Toledo, Spain.
| | - Ichiro Hisaki
- Graduate School of Engineering Science, Osaka University, 1-3 Machikaneyama, Toyonaka, Osaka 560-8531, Japan.
| | - Abderrazzak Douhal
- Departamento de Química Física, Facultad de Ciencias Ambientales y Bioquímica, and INAMOL, Universidad de Castilla-La Mancha, Avenida Carlos III, S/N, 45071 Toledo, Spain.
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12
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Boeije Y, Olivucci M. From a one-mode to a multi-mode understanding of conical intersection mediated ultrafast organic photochemical reactions. Chem Soc Rev 2023; 52:2643-2687. [PMID: 36970950 DOI: 10.1039/d2cs00719c] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/29/2023]
Abstract
This review discusses how ultrafast organic photochemical reactions are controlled by conical intersections, highlighting that decay to the ground-state at multiple points of the intersection space results in their multi-mode character.
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Affiliation(s)
- Yorrick Boeije
- Van 't Hoff Institute for Molecular Sciences (HIMS), University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands
| | - Massimo Olivucci
- Chemistry Department, University of Siena, Via Aldo Moro n. 2, 53100 Siena, Italy
- Chemistry Department, Bowling Green State University, Overman Hall, Bowling Green, Ohio 43403, USA
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13
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Absolute excited state molecular geometries revealed by resonance Raman signals. Nat Commun 2022; 13:7770. [PMID: 36522323 PMCID: PMC9755279 DOI: 10.1038/s41467-022-35099-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2022] [Accepted: 11/18/2022] [Indexed: 12/23/2022] Open
Abstract
Ultrafast reactions activated by light absorption are governed by multidimensional excited-state (ES) potential energy surfaces (PESs), which describe how the molecular potential varies with the nuclear coordinates. ES PESs ad-hoc displaced with respect to the ground state can drive subtle structural rearrangements, accompanying molecular biological activity and regulating physical/chemical properties. Such displacements are encoded in the Franck-Condon overlap integrals, which in turn determine the resonant Raman response. Conventional spectroscopic approaches only access their absolute value, and hence cannot determine the sense of ES displacements. Here, we introduce a two-color broadband impulsive Raman experimental scheme, to directly measure complex Raman excitation profiles along desired normal modes. The key to achieve this task is in the signal linear dependence on the Frank-Condon overlaps, brought about by non-degenerate resonant probe and off-resonant pump pulses, which ultimately enables time-domain sensitivity to the phase of the stimulated vibrational coherences. Our results provide the tool to determine the magnitude and the sensed direction of ES displacements, unambiguously relating them to the ground state eigenvectors reference frame.
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14
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Tsutsumi T, Ono Y, Taketsugu T. Multi-state Energy Landscape for Photoreaction of Stilbene and Dimethyl-stilbene. J Chem Theory Comput 2022; 18:7483-7495. [PMID: 36351076 DOI: 10.1021/acs.jctc.2c00560] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
We have recently developed the reaction space projector (ReSPer) method, which constructs a reduced-dimensionality reaction space uniquely determined from reference reaction paths for a polyatomic molecular system and projects classical trajectories into the same reaction space. In this paper, we extend ReSPer to the analysis of photoreaction dynamics and relaxation processes of stilbene and present the concept of a "multi-state energy landscape," incorporating the ground- and excited-state reaction subspaces. The multi-state energy landscape successfully explains the previously established photoreaction processes of cis-stilbene, such as the cis-trans photoisomerization and photocyclization. In addition, we discuss the difference in the excited-state reaction dynamics between stilbene and 1,1'-dimethyl stilbene based on a common reaction subspace determined from the framework part of reference structures with different number of atoms. This approach allows us to target any molecule with a common framework, greatly expanding the applicability of the ReSPer analysis. The multi-state energy landscape provides fruitful insight into photochemical reactions, exploring the excited- and ground-state potential energy surfaces, as well as comprehensive reaction processes with nonradiative transitions between adiabatic states, within the stage of a reduced-dimensionality reaction space.
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Affiliation(s)
- Takuro Tsutsumi
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo060-0810, Japan.,L-Station, Creative Research Institution (CRI), Hokkaido University, Sapporo060-0812, Japan
| | - Yuriko Ono
- Institute for Chemical Reaction Design and Discovery (WPI-ICReDD), Hokkaido University, Sapporo001-0021, Japan
| | - Tetsuya Taketsugu
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo060-0810, Japan.,Institute for Chemical Reaction Design and Discovery (WPI-ICReDD), Hokkaido University, Sapporo001-0021, Japan
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15
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Gillett AJ, Pershin A, Pandya R, Feldmann S, Sneyd AJ, Alvertis AM, Evans EW, Thomas TH, Cui LS, Drummond BH, Scholes GD, Olivier Y, Rao A, Friend RH, Beljonne D. Dielectric control of reverse intersystem crossing in thermally activated delayed fluorescence emitters. NATURE MATERIALS 2022; 21:1150-1157. [PMID: 35927434 PMCID: PMC7613666 DOI: 10.1038/s41563-022-01321-2] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/28/2021] [Accepted: 06/13/2022] [Indexed: 05/22/2023]
Abstract
Thermally activated delayed fluorescence enables organic semiconductors with charge transfer-type excitons to convert dark triplet states into bright singlets via reverse intersystem crossing. However, thus far, the contribution from the dielectric environment has received insufficient attention. Here we study the role of the dielectric environment in a range of thermally activated delayed fluorescence materials with varying changes in dipole moment upon optical excitation. In dipolar emitters, we observe how environmental reorganization after excitation triggers the full charge transfer exciton formation, minimizing the singlet-triplet energy gap, with the emergence of two (reactant-inactive) modes acting as a vibrational fingerprint of the charge transfer product. In contrast, the dielectric environment plays a smaller role in less dipolar materials. The analysis of energy-time trajectories and their free-energy functions reveals that the dielectric environment substantially reduces the activation energy for reverse intersystem crossing in dipolar thermally activated delayed fluorescence emitters, increasing the reverse intersystem crossing rate by three orders of magnitude versus the isolated molecule.
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Affiliation(s)
| | - Anton Pershin
- Laboratory for Chemistry of Novel Materials, Université de Mons, Mons, Belgium
- Wigner Research Centre for Physics, Budapest, Hungary
| | - Raj Pandya
- Cavendish Laboratory, University of Cambridge, Cambridge, UK
| | - Sascha Feldmann
- Cavendish Laboratory, University of Cambridge, Cambridge, UK
| | | | | | - Emrys W Evans
- Cavendish Laboratory, University of Cambridge, Cambridge, UK
- Department of Chemistry, Swansea University, Swansea, UK
| | - Tudor H Thomas
- Cavendish Laboratory, University of Cambridge, Cambridge, UK
| | - Lin-Song Cui
- CAS Key Laboratory of Soft Matter Chemistry, Department of Polymer Science and Engineering, University of Science and Technology of China, Hefei, China
| | | | | | - Yoann Olivier
- Unité de Chimie Physique Théorique et Structurale & Laboratoire de Physique du Solide, Namur Institute of Structured Matter, Université de Namur, Namur, Belgium
| | - Akshay Rao
- Cavendish Laboratory, University of Cambridge, Cambridge, UK
| | | | - David Beljonne
- Laboratory for Chemistry of Novel Materials, Université de Mons, Mons, Belgium.
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16
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Ng RC, El Sachat A, Cespedes F, Poblet M, Madiot G, Jaramillo-Fernandez J, Florez O, Xiao P, Sledzinska M, Sotomayor-Torres CM, Chavez-Angel E. Excitation and detection of acoustic phonons in nanoscale systems. NANOSCALE 2022; 14:13428-13451. [PMID: 36082529 PMCID: PMC9520674 DOI: 10.1039/d2nr04100f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/25/2022] [Accepted: 08/15/2022] [Indexed: 06/15/2023]
Abstract
Phonons play a key role in the physical properties of materials, and have long been a topic of study in physics. While the effects of phonons had historically been considered to be a hindrance, modern research has shown that phonons can be exploited due to their ability to couple to other excitations and consequently affect the thermal, dielectric, and electronic properties of solid state systems, greatly motivating the engineering of phononic structures. Advances in nanofabrication have allowed for structuring and phonon confinement even down to the nanoscale, drastically changing material properties. Despite developments in fabricating such nanoscale devices, the proper manipulation and characterization of phonons continues to be challenging. However, a fundamental understanding of these processes could enable the realization of key applications in diverse fields such as topological phononics, information technologies, sensing, and quantum electrodynamics, especially when integrated with existing electronic and photonic devices. Here, we highlight seven of the available methods for the excitation and detection of acoustic phonons and vibrations in solid materials, as well as advantages, disadvantages, and additional considerations related to their application. We then provide perspectives towards open challenges in nanophononics and how the additional understanding granted by these techniques could serve to enable the next generation of phononic technological applications.
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Affiliation(s)
- Ryan C Ng
- Catalan Institute of Nanoscience and Nanotechnology (ICN2), CSIC and BIST, Campus UAB, Bellaterra, 08193 Barcelona, Spain.
| | | | - Francisco Cespedes
- Catalan Institute of Nanoscience and Nanotechnology (ICN2), CSIC and BIST, Campus UAB, Bellaterra, 08193 Barcelona, Spain.
- Departamento de Física, Universidad Autónoma de Barcelona, Bellaterra, 08193 Barcelona, Spain
| | - Martin Poblet
- Catalan Institute of Nanoscience and Nanotechnology (ICN2), CSIC and BIST, Campus UAB, Bellaterra, 08193 Barcelona, Spain.
| | - Guilhem Madiot
- Catalan Institute of Nanoscience and Nanotechnology (ICN2), CSIC and BIST, Campus UAB, Bellaterra, 08193 Barcelona, Spain.
| | - Juliana Jaramillo-Fernandez
- Catalan Institute of Nanoscience and Nanotechnology (ICN2), CSIC and BIST, Campus UAB, Bellaterra, 08193 Barcelona, Spain.
| | - Omar Florez
- Catalan Institute of Nanoscience and Nanotechnology (ICN2), CSIC and BIST, Campus UAB, Bellaterra, 08193 Barcelona, Spain.
- Departamento de Física, Universidad Autónoma de Barcelona, Bellaterra, 08193 Barcelona, Spain
| | - Peng Xiao
- Catalan Institute of Nanoscience and Nanotechnology (ICN2), CSIC and BIST, Campus UAB, Bellaterra, 08193 Barcelona, Spain.
- Departamento de Física, Universidad Autónoma de Barcelona, Bellaterra, 08193 Barcelona, Spain
| | - Marianna Sledzinska
- Catalan Institute of Nanoscience and Nanotechnology (ICN2), CSIC and BIST, Campus UAB, Bellaterra, 08193 Barcelona, Spain.
| | - Clivia M Sotomayor-Torres
- Catalan Institute of Nanoscience and Nanotechnology (ICN2), CSIC and BIST, Campus UAB, Bellaterra, 08193 Barcelona, Spain.
- ICREA, Passeig Lluis Companys 23, 08010 Barcelona, Spain
| | - Emigdio Chavez-Angel
- Catalan Institute of Nanoscience and Nanotechnology (ICN2), CSIC and BIST, Campus UAB, Bellaterra, 08193 Barcelona, Spain.
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17
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Liu M, Xia P, Zhao G, Nie C, Gao K, He S, Wang L, Wu K. Energy‐Transfer Photocatalysis Using Lead Halide Perovskite Nanocrystals: Sensitizing Molecular Isomerization and Cycloaddition. Angew Chem Int Ed Engl 2022; 61:e202208241. [DOI: 10.1002/anie.202208241] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2022] [Indexed: 12/30/2022]
Affiliation(s)
- Meng Liu
- State Key Laboratory of Molecular Reaction Dynamics Dynamics Research Center for Energy and Environmental Materials Dalian Institute of Chemical Physics Chinese Academy of Sciences Dalian Liaoning 116023 China
- University of the Chinese Academy of Sciences Beijing 100049 China
| | - Pan Xia
- State Key Laboratory of Molecular Reaction Dynamics Dynamics Research Center for Energy and Environmental Materials Dalian Institute of Chemical Physics Chinese Academy of Sciences Dalian Liaoning 116023 China
| | - Guohui Zhao
- State Key Laboratory of Molecular Reaction Dynamics Dynamics Research Center for Energy and Environmental Materials Dalian Institute of Chemical Physics Chinese Academy of Sciences Dalian Liaoning 116023 China
- University of the Chinese Academy of Sciences Beijing 100049 China
| | - Chengming Nie
- State Key Laboratory of Molecular Reaction Dynamics Dynamics Research Center for Energy and Environmental Materials Dalian Institute of Chemical Physics Chinese Academy of Sciences Dalian Liaoning 116023 China
| | - Kaimin Gao
- State Key Laboratory of Molecular Reaction Dynamics Dynamics Research Center for Energy and Environmental Materials Dalian Institute of Chemical Physics Chinese Academy of Sciences Dalian Liaoning 116023 China
- University of the Chinese Academy of Sciences Beijing 100049 China
| | - Shan He
- State Key Laboratory of Molecular Reaction Dynamics Dynamics Research Center for Energy and Environmental Materials Dalian Institute of Chemical Physics Chinese Academy of Sciences Dalian Liaoning 116023 China
| | - Lifeng Wang
- State Key Laboratory of Molecular Reaction Dynamics Dynamics Research Center for Energy and Environmental Materials Dalian Institute of Chemical Physics Chinese Academy of Sciences Dalian Liaoning 116023 China
- University of the Chinese Academy of Sciences Beijing 100049 China
| | - Kaifeng Wu
- State Key Laboratory of Molecular Reaction Dynamics Dynamics Research Center for Energy and Environmental Materials Dalian Institute of Chemical Physics Chinese Academy of Sciences Dalian Liaoning 116023 China
- University of the Chinese Academy of Sciences Beijing 100049 China
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18
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Different timescales during ultrafast stilbene isomerization in the gas and liquid phases revealed using time-resolved photoelectron spectroscopy. Nat Chem 2022; 14:1126-1132. [PMID: 35953643 PMCID: PMC7613649 DOI: 10.1038/s41557-022-01012-0] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2020] [Accepted: 06/28/2022] [Indexed: 11/08/2022]
Abstract
Directly contrasting ultrafast excited-state dynamics in the gas and liquid phases is crucial to understanding the influence of complex environments. Previous studies have often relied on different spectroscopic observables, rendering direct comparisons challenging. Here, we apply extreme-ultraviolet time-resolved photoelectron spectroscopy to both gaseous and liquid cis-stilbene, revealing the coupled electronic and nuclear dynamics that underlie its isomerization. Our measurements track the excited-state wave packets from excitation along the complete reaction path to the final products. We observe coherent excited-state vibrational dynamics in both phases of matter that persist to the final products, enabling the characterization of the branching space of the S1-S0 conical intersection. We observe a systematic lengthening of the relaxation timescales in the liquid phase and a red shift of the measured excited-state frequencies that is most pronounced for the complex reaction coordinate. These results characterize in detail the influence of the liquid environment on both electronic and structural dynamics during a complete photochemical transformation.
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19
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Liu M, Xia P, Zhao G, Nie C, Gao K, he S, Wang L, Wu K. Energy‐Transfer Photocatalysis Using Lead Halide Perovskite Nanocrystals: Sensitizing Molecular Isomerization and Cycloaddition. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202208241] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Meng Liu
- Chinese Academy of Sciences Dalian Institute of Chemical Physics State Key Laboratory of Molecular Reaction Dynamics CHINA
| | - Pan Xia
- Chinese Academy of Sciences Dalian Institute of Chemical Physics State Key Laboratory of Molecular Reaction Dynamics CHINA
| | - Guohui Zhao
- Chinese Academy of Sciences Dalian Institute of Chemical Physics State Key Laboratory of Molecular Reaction Dynamics CHINA
| | - Chengming Nie
- Chinese Academy of Sciences Dalian Institute of Chemical Physics State Key Laboratory of Molecular Reaction Dynamics CHINA
| | - Kaimin Gao
- Chinese Academy of Sciences Dalian Institute of Chemical Physics State Key Laboratory of Molecular Reaction Dynamics CHINA
| | - Shan he
- Chinese Academy of Sciences Dalian Institute of Chemical Physics State Key Laboratory of Molecular Reaction Dynamics CHINA
| | - Lifeng Wang
- Chinese Academy of Sciences Dalian Institute of Chemical Physics State Key Laboratory of Molecular Reaction Dynamics CHINA
| | - Kaifeng Wu
- Dalian Institute of Chemical Physics State Key Laboratory of Molecular Reaction Dynamics 457 Zhongshan RdBldg 36 116023 Dalian CHINA
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20
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Batignani G, Sansone C, Ferrante C, Fumero G, Mukamel S, Scopigno T. Excited-State Energy Surfaces in Molecules Revealed by Impulsive Stimulated Raman Excitation Profiles. J Phys Chem Lett 2021; 12:9239-9247. [PMID: 34533307 PMCID: PMC8488957 DOI: 10.1021/acs.jpclett.1c02209] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2021] [Accepted: 08/16/2021] [Indexed: 05/14/2023]
Abstract
Photophysical and photochemical processes are ruled by the interplay between transient vibrational and electronic degrees of freedom, which are ultimately determined by the multidimensional potential energy surfaces (PESs). Differences between ground and excited PESs are encoded in the relative intensities of resonant Raman bands, but they are experimentally challenging to access, requiring measurements at multiple wavelengths under identical conditions. Herein, we perform a two-color impulsive vibrational scattering experiment to launch nuclear wavepacket motions by an impulsive pump and record their coupling with a targeted excited-state potential by resonant Raman processes with a delayed probe, generating in a single measurement background-free vibrational spectra across the entire sample absorption. Building on the interference between the multiple pathways resonant with the excited-state manifold that generate the Raman signal, we show how to experimentally tune their relative phase by varying the probe chirp, decoding nuclear displacements along different normal modes and revealing the multidimensional PESs. Our results are validated against time-dependent density functional theory.
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Affiliation(s)
- Giovanni Batignani
- Dipartimento
di Fisica, Universitá di Roma “La
Sapienza”, Roma I-00185, Italy
- Istituto
Italiano di Tecnologia, Center for Life Nano Science @Sapienza, Roma I-00161, Italy
| | - Carlotta Sansone
- Dipartimento
di Fisica, Universitá di Roma “La
Sapienza”, Roma I-00185, Italy
| | - Carino Ferrante
- Dipartimento
di Fisica, Universitá di Roma “La
Sapienza”, Roma I-00185, Italy
- Istituto
Italiano di Tecnologia, Center for Life Nano Science @Sapienza, Roma I-00161, Italy
| | - Giuseppe Fumero
- Dipartimento
di Fisica, Universitá di Roma “La
Sapienza”, Roma I-00185, Italy
| | - Shaul Mukamel
- Department
of Chemistry, University of California, Irvine, California 92623, United States
| | - Tullio Scopigno
- Dipartimento
di Fisica, Universitá di Roma “La
Sapienza”, Roma I-00185, Italy
- Istituto
Italiano di Tecnologia, Center for Life Nano Science @Sapienza, Roma I-00161, Italy
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21
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Kumar P, Fron E, Hosoi H, Kuramochi H, Takeuchi S, Mizuno H, Tahara T. Excited-State Proton Transfer Dynamics in LSSmOrange Studied by Time-Resolved Impulsive Stimulated Raman Spectroscopy. J Phys Chem Lett 2021; 12:7466-7473. [PMID: 34339202 DOI: 10.1021/acs.jpclett.1c01653] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
LSSmOrange is a fluorescent protein that exhibits a large energy gap between absorption and emission, which makes it a useful tool for multicolor bioimaging. This characteristic of LSSmOrange originates from excited-state proton transfer (ESPT): The neutral chromophore is predominantly present in the ground state while the bright fluorescence is emitted from the anionic excited state after ESPT. Interestingly, it was reported that this ESPT process follows bimodal dynamics, but its origin has not clearly been understood. We investigate ESPT of LSSmOrange using time-resolved impulsive stimulated Raman spectroscopy (TR-ISRS) that provides femtosecond time-resolved Raman spectra. The results indicate that the bimodal ESPT dynamics originates from the structural heterogeneity of the chromophore. Species-associated Raman spectra obtained by spectral analysis based on singular value decomposition (SVD) suggest that cis and trans chromophores coexist in the ground state. It is considered that these two forms are photoexcited and undergo ESPT in parallel, resulting in the bimodal dynamics of ESPT in LSSmOrange.
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Affiliation(s)
- Pardeep Kumar
- Molecular Spectroscopy Laboratory, RIKEN, 2-1 Hirosawa, Wako 351-0198, Japan
- Ultrafast Spectroscopy Research Team, RIKEN Center for Advanced Photonics (RAP), 2-1 Hirosawa, Wako 351-0198, Japan
| | - Eduard Fron
- KU Leuven Core Facility for Advanced Spectroscopy, Molecular Imaging and Photonics, Celestijnenlaan 200G, bus 2403, 3001 Heverlee, Belgium
| | - Haruko Hosoi
- Department of Biomolecular Science, Faculty of Sciences, Toho University, 2-2-1 Miyama, Funabashi 274-8510, Japan
| | - Hikaru Kuramochi
- Molecular Spectroscopy Laboratory, RIKEN, 2-1 Hirosawa, Wako 351-0198, Japan
- Ultrafast Spectroscopy Research Team, RIKEN Center for Advanced Photonics (RAP), 2-1 Hirosawa, Wako 351-0198, Japan
- JST, PRESTO, 4-1-8 Honcho, Kawaguchi, Saitama 332-0012, Japan
| | - Satoshi Takeuchi
- Molecular Spectroscopy Laboratory, RIKEN, 2-1 Hirosawa, Wako 351-0198, Japan
- Ultrafast Spectroscopy Research Team, RIKEN Center for Advanced Photonics (RAP), 2-1 Hirosawa, Wako 351-0198, Japan
| | - Hideaki Mizuno
- Laboratory of Biomolecular Network Dynamics, Biochemistry, Molecular and Structural Biology Section, Department of Chemistry, KU Leuven, Celestijnenlaan 200G, bus 2403, 3001 Heverlee, Belgium
| | - Tahei Tahara
- Molecular Spectroscopy Laboratory, RIKEN, 2-1 Hirosawa, Wako 351-0198, Japan
- Ultrafast Spectroscopy Research Team, RIKEN Center for Advanced Photonics (RAP), 2-1 Hirosawa, Wako 351-0198, Japan
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22
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Kuramochi H, Tahara T. Tracking Ultrafast Structural Dynamics by Time-Domain Raman Spectroscopy. J Am Chem Soc 2021; 143:9699-9717. [PMID: 34096295 PMCID: PMC9344463 DOI: 10.1021/jacs.1c02545] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
![]()
In traditional Raman spectroscopy,
narrow-band light is irradiated
on a sample, and its inelastic scattering, i.e., Raman scattering,
is detected. The energy difference between the Raman scattering and
the incident light corresponds to the vibrational energy of the molecule,
providing the Raman spectrum that contains rich information about
the molecular-level properties of the materials. On the other hand,
by using ultrashort optical pulses, it is possible to induce Raman-active
coherent nuclear motion of the molecule and to observe the molecular
vibration in real time. Moreover, this time-domain Raman measurement
can be combined with femtosecond photoexcitation, triggering chemical
changes, which enables tracking ultrafast structural dynamics in a
form of “time-resolved” time-domain Raman spectroscopy,
also known as time-resolved impulsive stimulated Raman spectroscopy.
With the advent of stable, ultrashort laser pulse sources, time-resolved
impulsive stimulated Raman spectroscopy now realizes high sensitivity
and a wide detection frequency window from THz to 3000 cm–1, and has seen success in unveiling the molecular mechanisms underlying
the efficient functions of complex molecular systems. In this Perspective,
we overview the present status of time-domain Raman spectroscopy,
particularly focusing on its application to the study of femtosecond
structural dynamics. We first explain the principle and a brief history
of time-domain Raman spectroscopy and then describe the apparatus
and recent applications to the femtosecond dynamics of complex molecular
systems, including proteins, molecular assemblies, and functional
materials. We also discuss future directions for time-domain Raman
spectroscopy, which has reached a status allowing a wide range of
applications.
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Affiliation(s)
- Hikaru Kuramochi
- Molecular Spectroscopy Laboratory, RIKEN, 2-1 Hirosawa, Wako 351-0198, Japan
- Ultrafast Spectroscopy Research Team, RIKEN Center for Advanced Photonics (RAP), 2-1 Hirosawa, Wako 351-0198, Japan
- Research Center of Integrative Molecular Systems (CIMoS), Institute for Molecular Science, 38 Nishigo-Naka, Myodaiji, Okazaki 444-8585, Japan
- JST, PRESTO, 4-1-8 Honcho, Kawaguchi 332-0012, Japan
| | - Tahei Tahara
- Molecular Spectroscopy Laboratory, RIKEN, 2-1 Hirosawa, Wako 351-0198, Japan
- Ultrafast Spectroscopy Research Team, RIKEN Center for Advanced Photonics (RAP), 2-1 Hirosawa, Wako 351-0198, Japan
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23
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Karpicz R, Ostapenko N, Ostapenko Y, Polupan Y, Lazarev I, Galunov N, Macernis M, Abramavicius D, Valkunas L. Unusual temperature dependence of the fluorescence decay in heterostructured stilbene. Phys Chem Chem Phys 2021; 23:3447-3454. [PMID: 33506842 DOI: 10.1039/d0cp05436d] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Fluorescence spectra as well as the fluorescence decay kinetics of hot-pressed and sublimated films of stilbene have been studied in a wide temperature range, from 15 K up to room temperature. The fluorescence decay kinetics demonstrate unusual elongation of the excitation lifetime with a temperature increase. This is in contrast to the corresponding data of stilbene solutions in chloroform and in a polystyrene (PS) matrix. It is well known that the excitation dynamics of stilbene in solution and in a PS matrix is controlled by the molecular isomerization/twisting process of separate molecules. The data analysis and quantum chemistry calculations of stilbene aggregates suggest that the temperature dependence of the fluorescence kinetics of bulk stilbene solids can be explained by fast exciton diffusion, which yields a thermalized exciton distribution in a relatively small number of fluorescence centres. The temperature dependence of the distribution can thus explain the observed fluorescence decay lifetimes.
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Affiliation(s)
- Renata Karpicz
- Molecular Compounds Physics Department, Center for Physical Sciences and Technology, Sauletekio Ave. 3, LT-10257, Vilnius, Lithuania.
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24
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Rather SR, Fu B, Kudisch B, Scholes GD. Interplay of vibrational wavepackets during an ultrafast electron transfer reaction. Nat Chem 2021; 13:70-76. [PMID: 33288893 DOI: 10.1038/s41557-020-00607-9] [Citation(s) in RCA: 41] [Impact Index Per Article: 13.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2020] [Accepted: 11/10/2020] [Indexed: 01/05/2023]
Abstract
Electron transfer reactions facilitate energy transduction and photoredox processes in biology and chemistry. Recent findings show that molecular vibrations can enable the dramatic acceleration of some electron transfer reactions, and control it by suppressing and enhancing reaction paths. Here, we report ultrafast spectroscopy experiments and quantum dynamics simulations that resolve how quantum vibrations participate in an electron transfer reaction. We observe ballistic electron transfer (~30 fs) along a reaction coordinate comprising high-frequency promoting vibrations. Along another vibrational coordinate, the system becomes impulsively out of equilibrium as a result of the electron transfer reaction. This leads to the generation (by the electron transfer reaction, not the laser pulse) of a new vibrational coherence along this second reaction coordinate in a mode associated with the reaction product. These results resolve a complex reaction trajectory composed of multiple vibrational coordinates that, like a sequence of ratchets, progressively diminish the recurrence of the reactant state.
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Affiliation(s)
| | - Bo Fu
- Department of Chemistry, Princeton University, Princeton, NJ, USA
| | - Bryan Kudisch
- Department of Chemistry, Princeton University, Princeton, NJ, USA
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25
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Herperger KR, Röder A, MacDonell RJ, Boguslavskiy AE, Skov AB, Stolow A, Schuurman MS. Directing excited state dynamics via chemical substitution: A systematic study of π-donors and π-acceptors at a carbon-carbon double bond. J Chem Phys 2020; 153:244307. [PMID: 33380089 DOI: 10.1063/5.0031689] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Functional group substituents are a ubiquitous tool in ground-state organic chemistry often employed to fine-tune chemical properties and obtain desired chemical reaction outcomes. Their effect on photoexcited electronic states, however, remains poorly understood. To help build an intuition for these effects, we have studied ethylene, substituted with electron acceptor (cyano) and/or electron donor (methoxy) substituents, both theoretically and experimentally: using ab initio quantum molecular dynamics and time-resolved photoelectron spectroscopy. Our results show the consistent trend that photo-induced ethylenic dynamics is primarily localized to the carbon with the greater electron density. For doubly substituted ethylenes, the trend is additive when both substituents are located on opposite carbons, whereas the methoxy group (in concert with steric effects) dominates when both substituents are located on a single carbon atom. These results point to the development of rules for structure-dynamics correlations; in this case, a novel mechanistic ultrafast photochemistry for conjugated carbon chains employing long-established chemical concepts.
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Affiliation(s)
| | - Anja Röder
- Department of Chemistry and Biomolecular Sciences, University of Ottawa, Ottawa, Ontario K1N 6N5, Canada
| | - Ryan J MacDonell
- Department of Chemistry and Biomolecular Sciences, University of Ottawa, Ottawa, Ontario K1N 6N5, Canada
| | | | - Anders B Skov
- Department of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark
| | - Albert Stolow
- Department of Physics, University of Ottawa, Ottawa, Ontario K1N 6N5, Canada
| | - Michael S Schuurman
- Department of Chemistry and Biomolecular Sciences, University of Ottawa, Ottawa, Ontario K1N 6N5, Canada
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26
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Liu Y, Xia SH, Zhang Y. Photochemical and photophysical properties of cis-stilbene molecule by electronic structure calculations and nonadiabatic surface-hopping dynamics simulations. Chem Phys 2020. [DOI: 10.1016/j.chemphys.2020.110957] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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27
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Orlikowska H, Sobolewska A, Bartkiewicz S. Light-responsive surfactants: Photochromic properties of water-soluble azobenzene derivatives. J Mol Liq 2020. [DOI: 10.1016/j.molliq.2020.113842] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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28
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Kumar P, Kuramochi H, Takeuchi S, Tahara T. Time-Domain Observation of Surface-Enhanced Coherent Raman Scattering with 10 5-10 6 Enhancement. J Phys Chem Lett 2020; 11:6305-6311. [PMID: 32700538 DOI: 10.1021/acs.jpclett.0c01411] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Combining surface-enhanced Raman scattering (SERS) with the coherent nonlinear Raman technique is a promising route for achieving higher sensitivity and time-resolved SERS measurements, yet such attempts have just been started. Here, we report time-domain Raman measurements of trans-1,2-bis(4-pyridyl)ethylene (BPE) adsorbed on gold nanoparticle assemblies (GNAs), which were carried out with impulsive stimulated Raman spectroscopy using sub-8 fs pulses. We observe coherent nuclear wavepacket motion of BPE on GNAs with drastic enhancement through the surface plasmon resonance, which provides information on the Raman-active vibrations in the time domain. Through Fourier transform of the measured time-domain Raman data, we obtained SERS spectra of BPE on GNAs with enhancement factors as high as 105-106. The present study not only demonstrates applicability of time-domain nonlinear Raman techniques in SERS, i.e., surface-enhanced impulsive stimulated Raman spectroscopy (SE-ISRS), but also provides a technical basis for femtosecond time-resolved SE-ISRS experiments to track ultrafast dynamics of the adsorbates.
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Affiliation(s)
- Pardeep Kumar
- Molecular Spectroscopy Laboratory, RIKEN, 2-1 Hirosawa, Wako 351-0198, Japan
- Ultrafast Spectroscopy Research Team, RIKEN Center for Advanced Photonics (RAP), 2-1 Hirosawa, Wako 351-0198, Japan
| | - Hikaru Kuramochi
- Molecular Spectroscopy Laboratory, RIKEN, 2-1 Hirosawa, Wako 351-0198, Japan
- Ultrafast Spectroscopy Research Team, RIKEN Center for Advanced Photonics (RAP), 2-1 Hirosawa, Wako 351-0198, Japan
- JST, PRESTO, 4-1-8 Honcho, Kawaguchi 332-0012, Japan
| | - Satoshi Takeuchi
- Molecular Spectroscopy Laboratory, RIKEN, 2-1 Hirosawa, Wako 351-0198, Japan
- Ultrafast Spectroscopy Research Team, RIKEN Center for Advanced Photonics (RAP), 2-1 Hirosawa, Wako 351-0198, Japan
| | - Tahei Tahara
- Molecular Spectroscopy Laboratory, RIKEN, 2-1 Hirosawa, Wako 351-0198, Japan
- Ultrafast Spectroscopy Research Team, RIKEN Center for Advanced Photonics (RAP), 2-1 Hirosawa, Wako 351-0198, Japan
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29
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Weir H, Williams M, Parrish RM, Hohenstein EG, Martínez TJ. Nonadiabatic Dynamics of Photoexcited cis-Stilbene Using Ab Initio Multiple Spawning. J Phys Chem B 2020; 124:5476-5487. [DOI: 10.1021/acs.jpcb.0c03344] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Affiliation(s)
- Hayley Weir
- Department of Chemistry and The PULSE Institute, Stanford University, Stanford, California 94305, United States
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, United States
| | - Monika Williams
- Department of Chemistry and The PULSE Institute, Stanford University, Stanford, California 94305, United States
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, United States
| | - Robert M. Parrish
- Department of Chemistry and The PULSE Institute, Stanford University, Stanford, California 94305, United States
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, United States
| | - Edward G. Hohenstein
- Department of Chemistry and The PULSE Institute, Stanford University, Stanford, California 94305, United States
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, United States
| | - Todd J. Martínez
- Department of Chemistry and The PULSE Institute, Stanford University, Stanford, California 94305, United States
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, United States
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30
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Kim W, Kim T, Kang S, Hong Y, Würthner F, Kim D. Tracking Structural Evolution during Symmetry‐Breaking Charge Separation in Quadrupolar Perylene Bisimide with Time‐Resolved Impulsive Stimulated Raman Spectroscopy. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202002733] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Woojae Kim
- Department of Chemistry Spectroscopy Laboratory for Functional π-Electronic Systems Yonsei University 03722 Seoul Korea
| | - Taeyeon Kim
- Department of Chemistry Spectroscopy Laboratory for Functional π-Electronic Systems Yonsei University 03722 Seoul Korea
| | - Seongsoo Kang
- Department of Chemistry Spectroscopy Laboratory for Functional π-Electronic Systems Yonsei University 03722 Seoul Korea
| | - Yongseok Hong
- Department of Chemistry Spectroscopy Laboratory for Functional π-Electronic Systems Yonsei University 03722 Seoul Korea
| | - Frank Würthner
- Institut für Organische Chemie & Center for, Nanosystems Chemistry Universität Würzburg Am Hubland 97074 Würzburg Germany
| | - Dongho Kim
- Department of Chemistry Spectroscopy Laboratory for Functional π-Electronic Systems Yonsei University 03722 Seoul Korea
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31
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Kim W, Kim T, Kang S, Hong Y, Würthner F, Kim D. Tracking Structural Evolution during Symmetry‐Breaking Charge Separation in Quadrupolar Perylene Bisimide with Time‐Resolved Impulsive Stimulated Raman Spectroscopy. Angew Chem Int Ed Engl 2020; 59:8571-8578. [DOI: 10.1002/anie.202002733] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2020] [Indexed: 01/12/2023]
Affiliation(s)
- Woojae Kim
- Department of Chemistry Spectroscopy Laboratory for Functional π-Electronic Systems Yonsei University 03722 Seoul Korea
| | - Taeyeon Kim
- Department of Chemistry Spectroscopy Laboratory for Functional π-Electronic Systems Yonsei University 03722 Seoul Korea
| | - Seongsoo Kang
- Department of Chemistry Spectroscopy Laboratory for Functional π-Electronic Systems Yonsei University 03722 Seoul Korea
| | - Yongseok Hong
- Department of Chemistry Spectroscopy Laboratory for Functional π-Electronic Systems Yonsei University 03722 Seoul Korea
| | - Frank Würthner
- Institut für Organische Chemie & Center for, Nanosystems Chemistry Universität Würzburg Am Hubland 97074 Würzburg Germany
| | - Dongho Kim
- Department of Chemistry Spectroscopy Laboratory for Functional π-Electronic Systems Yonsei University 03722 Seoul Korea
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32
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Kim J, Yoon TH, Cho M. Time-Resolved Impulsive Stimulated Raman Spectroscopy with Synchronized Triple Mode-Locked Lasers. J Phys Chem Lett 2020; 11:2864-2869. [PMID: 32212699 DOI: 10.1021/acs.jpclett.0c00596] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
A complete understanding of a photochemical reaction dynamics begins with real-time measurements of both electronic and vibrational structures of photoexcited molecules. Time-resolved impulsive stimulated Raman spectroscopy (TR-ISRS) with femtosecond actinic pump, Raman pump, and Raman probe pulses is one of the incisive techniques enabling one to investigate the structural changes of photoexcited molecules. Herein, we demonstrate that such femtosecond TR-ISRS is feasible with synchronized triple mode-locked lasers without using any time-delay devices. Taking advantage of precise control of the three repetition rates independently, we could achieve automatic scanning of two delay times between the three pulses, which makes both rapid data acquisition and wide dynamic range measurement of the fifth-order TR-ISRS signal achievable. We thus anticipate that the present triple mode-locked laser-based TR-ISRS technique will be of critical use for long-term monitoring of photochemical reaction dynamics in condensed phases and biological systems.
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Affiliation(s)
- JunWoo Kim
- Center for Molecular Spectroscopy and Dynamics, Institute for Basic Science (IBS), Seoul 02841, Republic of Korea
| | - Tai Hyun Yoon
- Center for Molecular Spectroscopy and Dynamics, Institute for Basic Science (IBS), Seoul 02841, Republic of Korea
- Department of Physics, Korea University, Seoul 02841, Republic of Korea
| | - Minhaeng Cho
- Center for Molecular Spectroscopy and Dynamics, Institute for Basic Science (IBS), Seoul 02841, Republic of Korea
- Department of Chemistry, Korea University, Seoul 02841, Republic of Korea
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33
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Fang C, Tang L. Mapping Structural Dynamics of Proteins with Femtosecond Stimulated Raman Spectroscopy. Annu Rev Phys Chem 2020; 71:239-265. [PMID: 32075503 DOI: 10.1146/annurev-physchem-071119-040154] [Citation(s) in RCA: 33] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
The structure-function relationships of biomolecules have captured the interest and imagination of the scientific community and general public since the field of structural biology emerged to enable the molecular understanding of life processes. Proteins that play numerous functional roles in cellular processes have remained in the forefront of research, inspiring new characterization techniques. In this review, we present key theoretical concepts and recent experimental strategies using femtosecond stimulated Raman spectroscopy (FSRS) to map the structural dynamics of proteins, highlighting the flexible chromophores on ultrafast timescales. In particular, wavelength-tunable FSRS exploits dynamic resonance conditions to track transient-species-dependent vibrational motions, enabling rational design to alter functions. Various ways of capturing excited-state chromophore structural snapshots in the time and/or frequency domains are discussed. Continuous development of experimental methodologies, synergistic correlation with theoretical modeling, and the expansion to other nonequilibrium, photoswitchable, and controllable protein systems will greatly advance the chemical, physical, and biological sciences.
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Affiliation(s)
- Chong Fang
- Department of Chemistry, Oregon State University, Corvallis, Oregon 97331, USA;
| | - Longteng Tang
- Department of Chemistry, Oregon State University, Corvallis, Oregon 97331, USA;
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34
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Kobayashi Y, Zeng T, Neumark DM, Leone SR. NaI revisited: Theoretical investigation of predissociation via ultrafast XUV transient absorption spectroscopy. J Chem Phys 2019; 151:204103. [DOI: 10.1063/1.5128105] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Yuki Kobayashi
- Department of Chemistry, University of California, Berkeley, California 94720, USA
| | - Tao Zeng
- Department of Chemistry, York University, Toronto, Ontario M3J1P3, Canada
| | - Daniel M. Neumark
- Department of Chemistry, University of California, Berkeley, California 94720, USA
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | - Stephen R. Leone
- Department of Chemistry, University of California, Berkeley, California 94720, USA
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
- Department of Physics, University of California, Berkeley, California 94720, USA
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35
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Kuramochi H, Takeuchi S, Iwamura M, Nozaki K, Tahara T. Tracking Photoinduced Au–Au Bond Formation through Transient Terahertz Vibrations Observed by Femtosecond Time-Domain Raman Spectroscopy. J Am Chem Soc 2019; 141:19296-19303. [DOI: 10.1021/jacs.9b06950] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Hikaru Kuramochi
- Molecular Spectroscopy Laboratory, RIKEN, 2-1 Hirosawa, Wako 351-0198, Japan
- Ultrafast Spectroscopy Research Team, RIKEN Center for Advanced Photonics (RAP), 2-1 Hirosawa, Wako 351-0198, Japan
- PRESTO, Japan Science and Technology Agency, 4-1-8 Honcho, Kawaguchi 332-0012, Japan
| | - Satoshi Takeuchi
- Molecular Spectroscopy Laboratory, RIKEN, 2-1 Hirosawa, Wako 351-0198, Japan
- Ultrafast Spectroscopy Research Team, RIKEN Center for Advanced Photonics (RAP), 2-1 Hirosawa, Wako 351-0198, Japan
| | - Munetaka Iwamura
- Graduate School of Science and Engineering, University of Toyama, 3190 Gofuku, Toyama 930-8555, Japan
| | - Koichi Nozaki
- Graduate School of Science and Engineering, University of Toyama, 3190 Gofuku, Toyama 930-8555, Japan
| | - Tahei Tahara
- Molecular Spectroscopy Laboratory, RIKEN, 2-1 Hirosawa, Wako 351-0198, Japan
- Ultrafast Spectroscopy Research Team, RIKEN Center for Advanced Photonics (RAP), 2-1 Hirosawa, Wako 351-0198, Japan
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36
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Kobayashi Y, Chang KF, Zeng T, Neumark DM, Leone SR. Direct mapping of curve-crossing dynamics in IBr by attosecond transient absorption spectroscopy. Science 2019; 365:79-83. [DOI: 10.1126/science.aax0076] [Citation(s) in RCA: 58] [Impact Index Per Article: 11.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2019] [Accepted: 06/11/2019] [Indexed: 12/29/2022]
Affiliation(s)
- Yuki Kobayashi
- Department of Chemistry, University of California, Berkeley, CA 94720, USA
| | - Kristina F. Chang
- Department of Chemistry, University of California, Berkeley, CA 94720, USA
| | - Tao Zeng
- Department of Chemistry, Carleton University, Ottawa, Ontario K1S5B6, Canada
| | - Daniel M. Neumark
- Department of Chemistry, University of California, Berkeley, CA 94720, USA
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
| | - Stephen R. Leone
- Department of Chemistry, University of California, Berkeley, CA 94720, USA
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
- Department of Physics, University of California, Berkeley, CA 94720, USA
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37
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Kuramochi H, Takeuchi S, Kamikubo H, Kataoka M, Tahara T. Fifth-order time-domain Raman spectroscopy of photoactive yellow protein for visualizing vibrational coupling in its excited state. SCIENCE ADVANCES 2019; 5:eaau4490. [PMID: 31187055 PMCID: PMC6555629 DOI: 10.1126/sciadv.aau4490] [Citation(s) in RCA: 37] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/12/2018] [Accepted: 04/26/2019] [Indexed: 05/15/2023]
Abstract
We report fifth-order time-domain Raman spectroscopy of photoactive yellow protein (PYP), with the aim to visualize vibrational coupling in its excited state. After the ultrashort actinic pump pulse prepared the vibrational coherence and population in the excited state, the evolving vibrational structure was tracked by time-resolved impulsive stimulated Raman spectroscopy using sub-7-fs pulses. The obtained fifth-order time-domain Raman data were translated to a two-dimensional (2D) frequency-frequency correlation map, which visualizes the correlation between low- and high-frequency vibrational modes of the excited state. The 2D map of PYP reveals a cross peak, indicating the coupling between the phenolic C─O stretch mode of the chromophore and the low-frequency modes (~160 cm-1), assignable to the intermolecular motions involving the surrounding hydrogen-bonded amino acids. The unveiled coupling suggests the importance of the low-frequency vibrational motion in the primary photoreaction of PYP, highlighting the unique capability of this spectroscopic approach for studying ultrafast reaction dynamics.
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Affiliation(s)
- Hikaru Kuramochi
- Molecular Spectroscopy Laboratory, RIKEN, 2-1 Hirosawa, Wako 351-0198, Japan
- Ultrafast Spectroscopy Research Team, RIKEN Center for Advanced Photonics (RAP), 2-1 Hirosawa, Wako 351-0198, Japan
- PRESTO, Japan Science and Technology Agency, 4-1-8 Honcho, Kawaguchi 332-0012, Japan
| | - Satoshi Takeuchi
- Molecular Spectroscopy Laboratory, RIKEN, 2-1 Hirosawa, Wako 351-0198, Japan
- Ultrafast Spectroscopy Research Team, RIKEN Center for Advanced Photonics (RAP), 2-1 Hirosawa, Wako 351-0198, Japan
- Corresponding author. (S.T.); (T.T.)
| | - Hironari Kamikubo
- Graduate School of Materials Science, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, Nara 630-0192, Japan
| | - Mikio Kataoka
- Graduate School of Materials Science, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, Nara 630-0192, Japan
| | - Tahei Tahara
- Molecular Spectroscopy Laboratory, RIKEN, 2-1 Hirosawa, Wako 351-0198, Japan
- Ultrafast Spectroscopy Research Team, RIKEN Center for Advanced Photonics (RAP), 2-1 Hirosawa, Wako 351-0198, Japan
- Corresponding author. (S.T.); (T.T.)
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38
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Taylor MA, Zhu L, Rozanov ND, Stout KT, Chen C, Fang C. Delayed vibrational modulation of the solvated GFP chromophore into a conical intersection. Phys Chem Chem Phys 2019; 21:9728-9739. [PMID: 31032505 DOI: 10.1039/c9cp01077g] [Citation(s) in RCA: 32] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Abstract
Green fluorescent protein (GFP) has revolutionized bioimaging and life sciences. Its successes have inspired modification of the chromophore structure and environment to tune emission properties, but outside the protein cage, the chromophore is essentially non-fluorescent. In this study, we employ the tunable femtosecond stimulated Raman spectroscopy (FSRS) and transient absorption (TA) to map the energy dissipation pathways of GFP model chromophore (HBDI) in basic aqueous solution. Strategic tuning of the Raman pump to 550 nm exploits the stimulated emission band to enhance excited state vibrational motions as HBDI navigates the non-equilibrium potential energy landscape to pass through a conical intersection. The time-resolved FSRS uncovers prominent anharmonic couplings between a global out-of-plane bending mode of ∼227 cm-1 and two modes at ∼866 and 1572 cm-1 before HBDI reaches the twisted intramolecular charge transfer (TICT) state on the ∼3 ps time scale. Remarkably, the wavelet transform analysis reveals a ∼500 fs delayed onset of the coupling peaks, in correlation with the emergence of an intermediate charge-separated state en route to the TICT state. This mechanism is corroborated by the altered coupling matrix for the HBDI Raman modes in the 50% (v/v) water-glycerol mixture, and a notable lengthening of the picosecond time constant. The real-time molecular "movie" of the general rotor-like HBDI isomerization reaction following photoexcitation represents a significant advance in comprehending the photochemical reaction pathways of the solvated GFP chromophore, therefore providing a crucial foundation to enable rational design of diverse nanomachines from efficient molecular rotors to bright fluorescent probes.
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Affiliation(s)
- Miles A Taylor
- Department of Chemistry, Oregon State University, 153 Gilbert Hall, Corvallis, Oregon 97331-4003, USA.
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39
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Kraack JP, Motzkus M, Buckup T. Excited State Vibrational Spectra of All- trans Retinal Derivatives in Solution Revealed By Pump-DFWM Experiments. J Phys Chem B 2018; 122:12271-12281. [PMID: 30507189 DOI: 10.1021/acs.jpcb.8b08495] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Abstract
The ultrafast structural changes during the photoinduced isomerization of the retinal-protonated Schiff base (RPSB) is still a poorly understood aspect in the retinal's photochemistry. In this work, we apply pump-degenerate four-wave mixing (pump-DFWM) to all- trans retinal (ATR) and retinal Schiff bases (RSB) to resolve coherent high- and low-frequency vibrational signatures from excited electronic states. We show that the vibrational spectra of excited singlet states in these samples exhibit pronounced differences compared to the relaxed ground state. Pump-DFWM results indicate three major features for ATR and RSB. (i) Excited state vibrational spectra of ATR and RSB consist predominately of low-frequency modes in the energetic range 100-500 cm-1. (ii) Excited state vibrational spectra show distinct differences for excitation in specific regions of electronic transitions of excited state absorption and emission. (iii) Low-frequency modes in ATR and RSB are inducible during the entire lifetime of the excited electronic states. This latter effect points to a transient molecular structure that, following initial relaxation between different excited electronic states, does not change anymore over the lifetime of the finally populated excited electronic state.
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Affiliation(s)
- Jan Philip Kraack
- Physikalisch-Chemisches Institut , Ruprecht-Karls Universität Heidelberg , D-69210 Heidelberg , Germany
| | - Marcus Motzkus
- Physikalisch-Chemisches Institut , Ruprecht-Karls Universität Heidelberg , D-69210 Heidelberg , Germany
| | - Tiago Buckup
- Physikalisch-Chemisches Institut , Ruprecht-Karls Universität Heidelberg , D-69210 Heidelberg , Germany
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40
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Holzmann N, Bernasconi L, Bisby RH, Parker AW. Influence of charge transfer on the isomerisation of stilbene derivatives for application in cancer therapy. Phys Chem Chem Phys 2018; 20:27778-27790. [PMID: 30378611 DOI: 10.1039/c8cp05375h] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The photoisomerisation of non-toxic trans-combretastatin CA4 to its cytotoxic cis isomer demonstrates the high potential of this and similar compounds for localised cancer therapy. The introduction of intramolecular charge-transfer character by altering the substituents of combretastatin systems opens up possibilities to tailor these stilbene derivatives to the special demands of anticancer drugs. In this TDDFT study we explore how absorption wavelengths for both the trans and cis isomers can be red shifted to enable deeper light penetration into tissue and how the trans → cis and cis → trans isomerisations are affected by charge transfer effects to different degrees.
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Affiliation(s)
- Nicole Holzmann
- STFC Rutherford Appleton Laboratory, Harwell Oxford, Didcot OX11 0QX, UK.
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41
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Duan HG, Qi DL, Sun ZR, Miller RD, Thorwart M. Signature of the geometric phase in the wave packet dynamics on hypersurfaces. Chem Phys 2018. [DOI: 10.1016/j.chemphys.2018.09.016] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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42
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MacDonell RJ, Schuurman MS. Substituent effects on the nonadiabatic dynamics of ethylene: π-donors and π-acceptors. Chem Phys 2018. [DOI: 10.1016/j.chemphys.2018.09.012] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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43
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Ikeda T, Tanimura Y. Phase-space wavepacket dynamics of internal conversion via conical intersection: Multi-state quantum Fokker-Planck equation approach. Chem Phys 2018. [DOI: 10.1016/j.chemphys.2018.07.013] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
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44
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Fletcher K, Krämer M, Bunz UH, Dreuw A. The π-conjugation length determines the fluorescence quenching mechanism of aromatic aldehydes in water. Chem Phys 2018. [DOI: 10.1016/j.chemphys.2018.07.008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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45
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Tsutsumi T, Harabuchi Y, Yamamoto R, Maeda S, Taketsugu T. On-the-fly molecular dynamics study of the excited-state branching reaction of α-methyl-cis-stilbene. Chem Phys 2018. [DOI: 10.1016/j.chemphys.2018.08.017] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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46
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Snyder JA, Bragg AE. Ultrafast Pump-Repump-Probe Photochemical Hole Burning as a Probe of Excited-State Reaction Pathway Branching. J Phys Chem Lett 2018; 9:5847-5854. [PMID: 30226782 DOI: 10.1021/acs.jpclett.8b02489] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
We demonstrate pump-repump-probe (PRP) transient hole burning as a spectroscopic tool for differentiating reactive from nonreactive deactivation of excited photochemical reactants observed by transient absorption spectroscopy (TAS). This method utilizes a time-delayed, wavelength-tunable ultrafast pulse to alter the excited reactant population, with the impact of "repumping" quantified through depletions in photoproduct absorption. We apply this approach to characterize dynamics affecting the nonadiabatic photocyclization efficiency to form S0 dihydrotriphenylene (DHT) following 266 nm excitation of ortho-terphenyl (OTP). TAS studies revealed bimodal deactivation of OTP*, but neither relaxation time scale (700 fs and 3.0 ps) could be assigned unambiguously to DHT formation due to overlap of excited-state and product spectra. PRP studies reveal that S1 OTP only cyclizes on the slower of these time scales, with the faster process attributable to nonreactive deactivation. We demonstrate that this method offers greater photochemical insights without assuming models to globally fit spectral transients collected by TAS.
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Affiliation(s)
- Joshua A Snyder
- Department of Chemistry , Johns Hopkins University , 3400 North Charles Street , Baltimore , Maryland 21218 , United States
| | - Arthur E Bragg
- Department of Chemistry , Johns Hopkins University , 3400 North Charles Street , Baltimore , Maryland 21218 , United States
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Multidimensional Vibrational Coherence Spectroscopy. Top Curr Chem (Cham) 2018; 376:35. [DOI: 10.1007/s41061-018-0213-4] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2018] [Accepted: 07/31/2018] [Indexed: 10/28/2022]
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Kuramochi H, Takeuchi S, Tahara T. Ultrafast photodissociation dynamics of diphenylcyclopropenone studied by time-resolved impulsive stimulated Raman spectroscopy. Chem Phys 2018. [DOI: 10.1016/j.chemphys.2018.02.023] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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49
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Introduction to State-of-the-Art Multidimensional Time-Resolved Spectroscopy Methods. Top Curr Chem (Cham) 2018; 376:28. [DOI: 10.1007/s41061-018-0206-3] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2018] [Accepted: 06/13/2018] [Indexed: 10/28/2022]
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Fang C, Tang L, Oscar BG, Chen C. Capturing Structural Snapshots during Photochemical Reactions with Ultrafast Raman Spectroscopy: From Materials Transformation to Biosensor Responses. J Phys Chem Lett 2018; 9:3253-3263. [PMID: 29799757 DOI: 10.1021/acs.jpclett.8b00373] [Citation(s) in RCA: 55] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
Chemistry studies the composition, structure, properties, and transformation of matter. A mechanistic understanding of the pertinent processes is required to translate fundamental knowledge into practical applications. The current development of ultrafast Raman as a powerful time-resolved vibrational technique, particularly femtosecond stimulated Raman spectroscopy (FSRS), has shed light on the structure-energy-function relationships of various photosensitive systems. This Perspective reviews recent work incorporating optical innovations, including the broad-band up-converted multicolor array (BUMA) into a tunable FSRS setup, and demonstrates its resolving power to watch metal speciation and photolysis, leading to high-quality thin films, and fluorescence modulation of chimeric protein biosensors for calcium ion imaging. We discuss advantages of performing FSRS in the mixed time-frequency domain and present strategies to delineate mechanisms by tracking low-frequency modes and systematically modifying chemical structures with specific functional groups. These unique insights at the chemical-bond level have started to enable the rational design and precise control of functional molecular machines in optical, materials, energy, and life sciences.
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Affiliation(s)
- Chong Fang
- Department of Chemistry , Oregon State University , 153 Gilbert Hall , Corvallis , Oregon 97331 , United States
| | - Longteng Tang
- Department of Chemistry , Oregon State University , 153 Gilbert Hall , Corvallis , Oregon 97331 , United States
| | - Breland G Oscar
- Department of Chemistry , Oregon State University , 153 Gilbert Hall , Corvallis , Oregon 97331 , United States
| | - Cheng Chen
- Department of Chemistry , Oregon State University , 153 Gilbert Hall , Corvallis , Oregon 97331 , United States
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