1
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Nägele K, Kinaston R, Gaffney D, Walworth M, Rohrlach AB, Carlhoff S, Huang Y, Ringbauer H, Bertolini E, Tromp M, Radzeviciute R, Petchey F, Anson D, Petchey P, Stirling C, Reid M, Barr D, Shaw B, Summerhayes G, Buckley H, Posth C, Powell A, Krause J. The impact of human dispersals and local interactions on the genetic diversity of coastal Papua New Guinea over the past 2,500 years. Nat Ecol Evol 2025; 9:908-923. [PMID: 40468042 DOI: 10.1038/s41559-025-02710-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2023] [Accepted: 04/10/2025] [Indexed: 06/11/2025]
Abstract
The inhabitants of New Guinea and its outlying islands have played an important role in the human history of the Pacific region. Nevertheless, the genetic diversity, particularly of pre-colonial communities, is still understudied. Here we present the ancient genomes of 42 individuals from Papua New Guinea (PNG). The ancient genomic results of individuals from Watom Island (Bismarck Archipelago) and the south and northeastern coasts of PNG are contextualized with new (bio-) archaeological data. The individuals' accelerator mass spectrometry (AMS) dates span 2,500 years of human habitation, and our results demonstrate the influences of different dispersal events on the genetic make-up of ancient PNG communities. The oldest individuals show an unadmixed Papuan-related genetic signature, whereas individuals dating from 2,100 years before present carry varying degrees of an East-Asian-related contribution. These results and the inferred admixture dates suggest a centuries-long delay in genetic mixture with local communities after the arrival of populations with Asian ancestry. Two geographically close communities on the South Coast, AMS dated to within the past 540 years, diverge in their genetic profiles, suggesting differences in their interaction spheres involving groups with distinct ancestries. The inferred split time of these communities around 650 years before present coincides with intensified settlement activity and the emergence of regional trade networks.
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Affiliation(s)
- Kathrin Nägele
- Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany.
| | | | - Dylan Gaffney
- School of Archaeology, University of Oxford, Oxford, UK
- Archaeology Programme, University of Otago, Dunedin, New Zealand
| | - Mary Walworth
- Department of Linguistic and Cultural Evolution, Max-Planck-Institute for Evolutionary Anthropology, Leipzig, Germany
- CRLAO (UMR8563), Centre National de la Recherche Scientifique, Paris, France
| | - Adam B Rohrlach
- Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
- School of Computer and Mathematical Sciences, University of Adelaide, Adelaide, South Australia, Australia
| | - Selina Carlhoff
- Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
| | - Yilei Huang
- Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
- Bioinformatics Group, Institute of Computer Science, Universität Leipzig, Leipzig, Germany
| | - Harald Ringbauer
- Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
- Department of Human Evolutionary Biology, Harvard University, Cambridge, MA, USA
| | - Emilie Bertolini
- Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
| | - Monica Tromp
- Archaeology Programme, University of Otago, Dunedin, New Zealand
- Southern Pacific Archaeological Research (SPAR), University of Otago, Dunedin, New Zealand
| | - Rita Radzeviciute
- Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
| | - Fiona Petchey
- Radiocarbon Dating Laboratory, Te Aka Mātuatua - School of Science, University of Waikato, Hamilton, New Zealand
- ARC Centre of Excellence for Australian Biodiversity and Heritage, College of Arts, Society and Education, James Cook University, Cairns, Queensland, Australia
| | - Dimitri Anson
- Archaeology Programme, University of Otago, Dunedin, New Zealand
| | | | - Claudine Stirling
- Department of Geology, University of Otago, Dunedin, New Zealand
- Centre for Trace Element Analysis, Department of Geology, University of Otago, Dunedin, New Zealand
| | - Malcolm Reid
- Centre for Trace Element Analysis, Department of Geology, University of Otago, Dunedin, New Zealand
| | - David Barr
- Centre for Trace Element Analysis, Department of Geology, University of Otago, Dunedin, New Zealand
| | - Ben Shaw
- School of Culture History and Language, Australian National University, Canberra, Australian Capital Territory, Australia
| | - Glenn Summerhayes
- Archaeology Programme, University of Otago, Dunedin, New Zealand
- School of Social Science, University of Queensland, Saint Lucia, Queensland, Australia
| | - Hallie Buckley
- Department of Anatomy, School of Biomedical Sciences, University of Otago, Dunedin, New Zealand
| | - Cosimo Posth
- Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany.
- Archaeo- and Palaeogenetics, Institute for Archaeological Sciences, Department of Geosciences, University of Tübingen, Tübingen, Germany.
- Senckenberg Centre for Human Evolution and Palaeoenvironment, University of Tübingen, Tübingen, Germany.
| | - Adam Powell
- Department of Human Behavior, Ecology and Culture, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
| | - Johannes Krause
- Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany.
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2
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Richard PI, Baltosser WH, Williams PH, He Q. Phylogenetic analysis of microbial CP-lyase cluster genes for bioremediation of phosphonate. AMB Express 2025; 15:42. [PMID: 40064825 PMCID: PMC11893972 DOI: 10.1186/s13568-025-01856-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2024] [Accepted: 02/22/2025] [Indexed: 03/14/2025] Open
Abstract
The ever-increasing use of phosphonates and their derivatives has resulted in the discharge of large quantities of these materials into the ecosystem, causing pollution and harmful shifts in microbiome composition. We conducted an extensive phylogenetic analysis to address this mounting problem and to help determine suitable microbes for bioremediation in specific environments. The 84 microorganisms included in our study span the gamut of species and occupied habitats. They degrade phosphonates by expressing an enzyme complex; CP-Lyase transcribed from 14 cistrons. Of the organisms studied, 12, 39, and 25 are singularly suitable for mostly freshwater, marine, or terrestrial habitats, respectively. Others adapted to multihabitats include Calothrix sp. PCC 7507 (both freshwater and marine habitats), Escherichia coli, Kaistia soli, Limoniibacter endophyticus, Marivita sp. and Virgibacillus dokdonensis (both marine and terrestrial habitats), Acidithiobacillus ferrooxidans (both freshwater and terrestrial habitats), with Paenibacillus contaminans suitable for freshwater, marine, and terrestrial habitats. All organisms were statistically rooted to glutathione peroxidase for phylogenetic perspective with tree topology dependent upon 50% or greater support. Clustered genes have been shown to have co-evolved based on striking nucleotide similarity and clade groupings within the tree topologies generated.
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Affiliation(s)
- Precious I Richard
- Department of Biology, University of Arkansas at Little Rock, Little Rock, AR, 72204, USA
| | - William H Baltosser
- Department of Biology, University of Arkansas at Little Rock, Little Rock, AR, 72204, USA
| | - Philip H Williams
- MidSouth Bioinformatics Center, University of Arkansas at Little Rock, Little Rock, AR, 72204, USA
| | - Qingfang He
- Department of Biology, University of Arkansas at Little Rock, Little Rock, AR, 72204, USA.
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3
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Boissonneault M, Tallman A, Gast V, Greenhill SJ. Projected speaker numbers and dormancy risks of Canada's Indigenous languages. ROYAL SOCIETY OPEN SCIENCE 2025; 12:241091. [PMID: 39975661 PMCID: PMC11836540 DOI: 10.1098/rsos.241091] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/28/2024] [Revised: 12/04/2024] [Accepted: 01/07/2025] [Indexed: 02/21/2025]
Abstract
UNESCO launched the International Decade of Indigenous Languages in 2022 to draw attention to the impending loss of nearly half of the world's linguistic diversity. However, how the speaker numbers and dormancy risks of these languages will evolve remains largely unexplored. Here, we use Canadian census data and probabilistic population projection to estimate changes in speaker numbers and dormancy risks of 27 Indigenous languages. Our model suggests that speaker numbers could, over the period 2001-2101, decline by more than 90% in 16 languages and that dormancy risks could surpass 50% among five. Since the declines are greater among already less commonly spoken languages, just nine languages could account for more than 99% of all Canadian Indigenous language speakers in 2101. Finally, dormancy risks tend to be higher among isolates and within specific language families, providing additional evidence about the uneven nature of language endangerment worldwide. Our approach further illustrates the magnitude of the crisis in linguistic diversity and suggests that demographic projection could be a useful tool in assessing the vitality of the world's languages.
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Affiliation(s)
- Michaël Boissonneault
- Department of demography and population sciences, Université de Montréal, Montreal, Canada
- Department of Linguistics and Philology, Uppsala Universitet, Uppsala, Sweden
| | - Adam Tallman
- Department of English and American Studies, Friedrich-Schiller-Universität Jena, Jena, Germany
| | - Volker Gast
- Department of English and American Studies, Friedrich-Schiller-Universität Jena, Jena, Germany
| | - Simon J. Greenhill
- School of Biological Sciences, The University of Auckland, Auckland, New Zealand
- Department of Linguistic and Cultural Evolution, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
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4
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Macdonald JC, Blanco-Portillo J, Feldman MW, Ram Y. Cultural transmission, networks, and clusters among Austronesian-speaking peoples. EVOLUTIONARY HUMAN SCIENCES 2024; 6:e51. [PMID: 39703946 PMCID: PMC11658950 DOI: 10.1017/ehs.2024.45] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2024] [Revised: 07/17/2024] [Accepted: 08/30/2024] [Indexed: 12/21/2024] Open
Abstract
With its linguistic and cultural diversity, Austronesia is important in the study of evolutionary forces that generate and maintain cultural variation. By analysing publicly available datasets, we have identified four classes of cultural features in Austronesia and distinct clusters within each class. We hypothesized that there are differing modes of transmission and patterns of variation in these cultural classes and that geography alone would be insufficient to explain some of these patterns of variation. We detected relative differences in the verticality of transmission and distinct patterns of cultural variation in each cultural class. There is support for pulses and pauses in the Austronesian expansion, a west-to-east increase in isolation with explicable exceptions, and correspondence between linguistic and cultural outliers. Our results demonstrate how cultural transmission and patterns of variation can be analysed using methods inspired by population genetics.
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Affiliation(s)
- Joshua C. Macdonald
- School of Zoology, Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel
| | | | | | - Yoav Ram
- School of Zoology, Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel
- Safra Center for Bioinformatics, Tel Aviv University, Tel Aviv, Israel
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5
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Fogarty L, Kandler A, Creanza N, Feldman MW. Half a century of quantitative cultural evolution. Proc Natl Acad Sci U S A 2024; 121:e2418106121. [PMID: 39556730 PMCID: PMC11621465 DOI: 10.1073/pnas.2418106121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2024] Open
Affiliation(s)
- Laurel Fogarty
- Department of Human Behavior, Ecology and Culture, Max Planck Institute for Evolutionary Anthropology, Leipzig04103, Germany
| | - Anne Kandler
- Department of Human Behavior, Ecology and Culture, Max Planck Institute for Evolutionary Anthropology, Leipzig04103, Germany
| | - Nicole Creanza
- Department of Biological Sciences, Vanderbilt University, Nashville, TN37235
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6
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Bromham L, Yaxley KJ, Cardillo M. Islands are engines of language diversity. Nat Ecol Evol 2024; 8:1991-2002. [PMID: 39237760 DOI: 10.1038/s41559-024-02488-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2024] [Accepted: 07/01/2024] [Indexed: 09/07/2024]
Abstract
Islands have played a prominent role in evolutionary and ecological theory, centring the theoretical framework for understanding biodiversity in terms of isolation and area and providing 'laboratories' of evolutionary change and adaptive radiation. However, a similar role for islands in understanding global language diversity has not been established, even though one-sixth of the world's languages are spoken on islands which account for <1% of the inhabited land area. The striking diversity of island languages remains largely unexplained. We construct a global database which reveals that 10% of the world's languages are endemic to islands (landmasses <11,000 km2) and we test several key theories of language evolution and diversity. We show that language diversity on islands increases with area but does not show a steady decrease with isolation, nor are island languages at elevated risk of loss. However, number of endemic languages per island increases with both area and isolation. We demonstrate that islands shape language evolution, with fewer phonemes (distinct sounds) in island endemic languages with increasing isolation. Our results suggest that islands generate language diversity by accelerating both language change and diversification.
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Affiliation(s)
- Lindell Bromham
- Macroevolution and Macroecology, Research School of Biology, Australian National University, Canberra, Australian Capital Territory, Australia.
| | - Keaghan J Yaxley
- Macroevolution and Macroecology, Research School of Biology, Australian National University, Canberra, Australian Capital Territory, Australia
| | - Marcel Cardillo
- Macroevolution and Macroecology, Research School of Biology, Australian National University, Canberra, Australian Capital Territory, Australia
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7
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Cathcart CA. Multiple evolutionary pressures shape identical consonant avoidance in the world's languages. Proc Natl Acad Sci U S A 2024; 121:e2316677121. [PMID: 38917001 PMCID: PMC11228491 DOI: 10.1073/pnas.2316677121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2023] [Accepted: 05/15/2024] [Indexed: 06/27/2024] Open
Abstract
Languages disfavor word forms containing sequences of similar or identical consonants, due to the biomechanical and cognitive difficulties posed by patterns of this sort. However, the specific evolutionary processes responsible for this phenomenon are not fully understood. Words containing sequences of identical consonants may be more likely to arise than those without; processes of word form mutation may be more likely to remove than create sequences of identical consonants in word forms; finally, words containing identical consonants may die out more frequently than those without. Phylogenetic analyses of the evolution of homologous word forms indicate that words with identical consonants arise less frequently than those without. However, words with identical consonants do not die out more frequently than those without. Further analyses reveal that forms with identical consonants are replaced in basic meaning functions more frequently than words without. Taken together, results suggest that the underrepresentation of sequences of identical consonants is overwhelmingly a by-product of constraints on word form coinage, though processes related to word usage also serve to ensure that such patterns are infrequent in more salient vocabulary items. These findings clarify aspects of processes of lexical evolution and competition that take place during language change, optimizing communicative systems.
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Affiliation(s)
- Chundra A Cathcart
- Department of Comparative Language Science, University of Zurich, Zürich CH-8050, Switzerland
- Center for the Interdisciplinary Study of Language Evolution, University of Zurich, Zürich CH-8050, Switzerland
- Deutsche Forschungsgemeinschaft Center "Words, Bones, Genes, Tools", University of Tübingen, Tübingen 72074, Germany
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8
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King B, Greenhill SJ, Reid LA, Ross M, Walworth M, Gray RD. Bayesian phylogenetic analysis of Philippine languages supports a rapid migration of Malayo-Polynesian languages. Sci Rep 2024; 14:14967. [PMID: 38942799 PMCID: PMC11213883 DOI: 10.1038/s41598-024-65810-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2023] [Accepted: 06/24/2024] [Indexed: 06/30/2024] Open
Abstract
The Philippines are central to understanding the expansion of the Austronesian language family from its homeland in Taiwan. It remains unknown to what extent the distribution of Malayo-Polynesian languages has been shaped by back migrations and language leveling events following the initial Out-of-Taiwan expansion. Other aspects of language history, including the effect of language switching from non-Austronesian languages, also remain poorly understood. Here we apply Bayesian phylogenetic methods to a core-vocabulary dataset of Philippine languages. Our analysis strongly supports a sister group relationship between the Sangiric and Minahasan groups of northern Sulawesi on one hand, and the rest of the Philippine languages on the other, which is incompatible with a simple North-to-South dispersal from Taiwan. We find a pervasive geographical signal in our results, suggesting a dominant role for cultural diffusion in the evolution of Philippine languages. However, we do find some support for a later migration of Gorontalo-Mongondow languages to northern Sulawesi from the Philippines. Subsequent diffusion processes between languages in Sulawesi appear to have led to conflicting data and a highly unstable phylogenetic position for Gorontalo-Mongondow. In the Philippines, language switching to Austronesian in 'Negrito' groups appears to have occurred at different time-points throughout the Philippines, and based on our analysis, there is no discernible effect of language switching on the basic vocabulary.
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Affiliation(s)
- Benedict King
- Department of Linguistic and Cultural Evolution, Max Planck Institute for Evolutionary Anthropology, 04103, Leipzig, Germany.
| | - Simon J Greenhill
- School of Biological Sciences, University of Auckland, Auckland, 1142, New Zealand
| | - Lawrence A Reid
- National Museum of the Philippines, 1000, Ermita, Manila, Metro Manila, Philippines
- Department of Linguistics, University of Hawai'i at Mānoa, Honolulu, HI, 96822, USA
| | - Malcolm Ross
- School of Culture, History and Language, Australian National University, Canberra, 2601, Australia
| | - Mary Walworth
- Department of Linguistic and Cultural Evolution, Max Planck Institute for Evolutionary Anthropology, 04103, Leipzig, Germany
| | - Russell D Gray
- Department of Linguistic and Cultural Evolution, Max Planck Institute for Evolutionary Anthropology, 04103, Leipzig, Germany
- School of Psychology, University of Auckland, Auckland, 1142, New Zealand
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9
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Yang C, Zhang X, Yan S, Yang S, Wu B, You F, Cui Y, Xie N, Wang Z, Jin L, Xu S, Zhang M. Large-scale lexical and genetic alignment supports a hybrid model of Han Chinese demic and cultural diffusions. Nat Hum Behav 2024; 8:1163-1176. [PMID: 38740988 DOI: 10.1038/s41562-024-01886-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2023] [Accepted: 04/11/2024] [Indexed: 05/16/2024]
Abstract
The Han Chinese history is shaped by substantial demographic activities and sociocultural transmissions. However, it remains challenging to assess the contributions of demic and cultural diffusion to Han culture and language, primarily due to the lack of rigorous examination of genetic-linguistic congruence. Here we digitized a large-scale linguistic inventory comprising 1,018 lexical traits across 926 dialect varieties. Using phylogenetic analysis and admixture inference, we revealed a north-south gradient of lexical differences that probably resulted from historical migrations. Furthermore, we quantified extensive horizontal language transfers and pinpointed central China as a dialectal melting pot. Integrating genetic data from 30,408 Han Chinese individuals, we compared the lexical and genetic landscapes across 26 provinces. Our results support a hybrid model where demic diffusion predominantly impacts central China, while cultural diffusion and language assimilation occur in southwestern and coastal regions, respectively. This interdisciplinary study sheds light on the complex social-genetic history of the Han Chinese.
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Affiliation(s)
- Chengkun Yang
- State Key Laboratory of Genetic Engineering, Center for Evolutionary Biology, Human Phenome Institute, Zhangjiang Fudan International Innovation Center, School of Life Science, Fudan University, Shanghai, China
| | - Xiaoxi Zhang
- School of Life Science and Technology, ShanghaiTech University, Shanghai, China
- Key Laboratory of Computational Biology, Shanghai Institute of Nutrition and Health, University of Chinese Academy of Sciences, Chinese Academy of Sciences, Shanghai, China
| | - Shi Yan
- School of Ethnology and Sociology, Minzu University of China, Beijing, China
| | - Sizhe Yang
- State Key Laboratory of Genetic Engineering, Center for Evolutionary Biology, Human Phenome Institute, Zhangjiang Fudan International Innovation Center, School of Life Science, Fudan University, Shanghai, China
| | - Baihui Wu
- State Key Laboratory of Genetic Engineering, Center for Evolutionary Biology, Human Phenome Institute, Zhangjiang Fudan International Innovation Center, School of Life Science, Fudan University, Shanghai, China
| | - Fengshuo You
- Department of Chinese Language and Literature, Fudan University, Shanghai, China
| | - Yue Cui
- Department of Cultural Heritage and Museology, Fudan University, Shanghai, China
| | - Ni Xie
- Department of Linguistics and Modern Languages, The Chinese University of Hong Kong, Hong Kong, China
| | - Zhiyi Wang
- Department of Chinese Language and Literature, Fudan University, Shanghai, China
| | - Li Jin
- State Key Laboratory of Genetic Engineering, Center for Evolutionary Biology, Human Phenome Institute, Zhangjiang Fudan International Innovation Center, School of Life Science, Fudan University, Shanghai, China.
| | - Shuhua Xu
- State Key Laboratory of Genetic Engineering, Center for Evolutionary Biology, Human Phenome Institute, Zhangjiang Fudan International Innovation Center, School of Life Science, Fudan University, Shanghai, China.
- School of Life Science and Technology, ShanghaiTech University, Shanghai, China.
- Key Laboratory of Computational Biology, Shanghai Institute of Nutrition and Health, University of Chinese Academy of Sciences, Chinese Academy of Sciences, Shanghai, China.
| | - Menghan Zhang
- Institute of Modern Languages and Linguistics, Fudan University, Shanghai, China.
- Research Institute of Intelligent Complex Systems, Fudan University, Shanghai, China.
- Ministry of Education Key Laboratory of Contemporary Anthropology, Fudan University, Shanghai, China.
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10
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Passmore S, Wood ALC, Barbieri C, Shilton D, Daikoku H, Atkinson QD, Savage PE. Global musical diversity is largely independent of linguistic and genetic histories. Nat Commun 2024; 15:3964. [PMID: 38729968 PMCID: PMC11087526 DOI: 10.1038/s41467-024-48113-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2023] [Accepted: 04/19/2024] [Indexed: 05/12/2024] Open
Abstract
Music is a universal yet diverse cultural trait transmitted between generations. The extent to which global musical diversity traces cultural and demographic history, however, is unresolved. Using a global musical dataset of 5242 songs from 719 societies, we identify five axes of musical diversity and show that music contains geographical and historical structures analogous to linguistic and genetic diversity. After creating a matched dataset of musical, genetic, and linguistic data spanning 121 societies containing 981 songs, 1296 individual genetic profiles, and 121 languages, we show that global musical similarities are only weakly and inconsistently related to linguistic or genetic histories, with some regional exceptions such as within Southeast Asia and sub-Saharan Africa. Our results suggest that global musical traditions are largely distinct from some non-musical aspects of human history.
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Affiliation(s)
- Sam Passmore
- Graduate School of Media and Governance, Keio University, Fujisawa, Japan.
- Evolution of Cultural Diversity Initiative (ECDI), Australian National University, Canberra, Australia.
| | | | - Chiara Barbieri
- Department of Evolutionary Biology and Environmental Studies, University of Zurich, Zurich, 8057, Switzerland
- Centre for the Interdisciplinary Study of Language Evolution (ISLE), University of Zurich, Zurich, 8050, Switzerland
- Department of Life and Environmental Sciences, University of Cagliari, 09126, Cagliari, Italy
| | - Dor Shilton
- Cohn Institute for the History and Philosophy of Science and Ideas, Tel Aviv University, Tel Aviv, Israel
- Edelstein Centre for the History and Philosophy of Science, Technology, and Medicine, Hebrew University of Jerusalem, Jerusalem, Israel
| | - Hideo Daikoku
- Graduate School of Media and Governance, Keio University, Fujisawa, Japan
| | | | - Patrick E Savage
- School of Psychology, University of Auckland, Auckland, New Zealand.
- Faculty of Environment and Information Studies, Keio University, Fujisawa, Japan.
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11
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Abner N, Clarté G, Geraci C, Ryder RJ, Mertz J, Salgat A, Yu S. Computational phylogenetics reveal histories of sign languages. Science 2024; 383:519-523. [PMID: 38301028 DOI: 10.1126/science.add7766] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2022] [Accepted: 12/20/2023] [Indexed: 02/03/2024]
Abstract
Sign languages are naturally occurring languages. As such, their emergence and spread reflect the histories of their communities. However, limitations in historical recordkeeping and linguistic documentation have hindered the diachronic analysis of sign languages. In this work, we used computational phylogenetic methods to study family structure among 19 sign languages from deaf communities worldwide. We used phonologically coded lexical data from contemporary languages to infer relatedness and suggest that these methods can help study regular form changes in sign languages. The inferred trees are consistent in key respects with known historical information but challenge certain assumed groupings and surpass analyses made available by traditional methods. Moreover, the phylogenetic inferences are not reducible to geographic distribution but do affirm the importance of geopolitical forces in the histories of human languages.
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Affiliation(s)
- Natasha Abner
- Department of Linguistics, University of Michigan, Ann Arbor, MI, USA
| | - Grégoire Clarté
- Finnish Center for Artificial Intelligence, Helsinki, Finland
- Department of Computer Science, University of Helsinki, Helsinki, Finland
- Centre de Recherche en Mathématiques de la Décision (CEREMADE), CNRS, UMR 7534, Université Paris-Dauphine, PSL University, Paris, France
| | - Carlo Geraci
- Département d'Études Cognitives, Institut Jean-Nicod (ENS-EHESS-CNRS), PSL University, Paris, France
| | - Robin J Ryder
- Centre de Recherche en Mathématiques de la Décision (CEREMADE), CNRS, UMR 7534, Université Paris-Dauphine, PSL University, Paris, France
| | - Justine Mertz
- Département d'Études Cognitives, Institut Jean-Nicod (ENS-EHESS-CNRS), PSL University, Paris, France
- Laboratoire de Linguistique Formelle, CNRS, UMR 7110, Université Paris Cité, Paris, France
| | - Anah Salgat
- Department of Linguistics, University of Michigan, Ann Arbor, MI, USA
- School of Medicine, Wayne State University, Detroit, MI, USA
| | - Shi Yu
- Département d'Études Cognitives, Institut Jean-Nicod (ENS-EHESS-CNRS), PSL University, Paris, France
- Laboratoire de Phonétique et Phonologie, UMR 7018, CNRS, Université Sorbonne Nouvelle Paris 3, Paris, France
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12
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Luis JR, Palencia-Madrid L, Runfeldt G, Garcia-Bertrand R, Herrera RJ. Delineating the dispersal of Y-chromosome sub-haplogroup O2a2b-P164 among Austronesian-speaking populations. Sci Rep 2024; 14:2066. [PMID: 38267477 PMCID: PMC10808098 DOI: 10.1038/s41598-024-52293-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2023] [Accepted: 01/16/2024] [Indexed: 01/26/2024] Open
Abstract
This article reports on an exploration of the Y-chromosome sub-haplogroup O2a2b-P164 in Austronesian-speaking populations. Moderate to high abundance of the P 164 mutation is seen in the West Pacific including the Amis of Formosa (36%) and the Filipinos of Mindanao (50%) as well as in the Kiritimati of Micronesia (70%), and Tonga and Samoa of West Polynesia (54% and 33%, respectively), and it drops to low frequencies in populations of East Polynesia. The communities of Polynesia and Micronesia exhibit considerable inter- and intra-population haplotype sharing suggesting extensive population affinity. The observed affinities, as well as the ages and diversity values within the P 164 sub-haplogroup among Austronesian-speaking populations signal an ancestral migration route and relationships that link the Amis of Taiwan with distant communities in West and East Polynesia, Micronesia, and the Maori of New Zealand. High resolution sequencing of the Austronesian Y chromosome indicate that the P 164 lineage originated about 19,000 ya and then split into three branches separating the Ami aborigines, Southeast Asian and Polynesian/Micronesian populations about 4700 ya, roughly coinciding with the initiation of the Austronesian diaspora. The Y-chromosomes of all the Polynesian and Micronesian population examined belong to the new FT 257096 haplogroup.
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Affiliation(s)
- Javier Rodriguez Luis
- Area de Antropología, Facultad de Biología, Universidad de Santiago de Compostela, Campus Sur s/n, 15782, Santiago de Compostela, Spain
| | - Leire Palencia-Madrid
- BIOMICs Research Group, Dpto. Z. y Biologia Celular A., Lascaray Research Centre, University of the Basque Country UPV/EHU, 01006, Vitoria-Gasteiz, Spain
| | | | - Ralph Garcia-Bertrand
- Department of Molecular Biology, Colorado College, 14 East Cache La Poudre Street, Colorado Springs, CO, 80903-3294, USA
| | - Rene J Herrera
- Department of Molecular Biology, Colorado College, 14 East Cache La Poudre Street, Colorado Springs, CO, 80903-3294, USA.
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13
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Yang S, Sun X, Jin L, Zhang M. Inferring language dispersal patterns with velocity field estimation. Nat Commun 2024; 15:190. [PMID: 38167834 PMCID: PMC10761963 DOI: 10.1038/s41467-023-44430-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2023] [Accepted: 12/11/2023] [Indexed: 01/05/2024] Open
Abstract
Reconstructing the spatial evolution of languages can deepen our understanding of the demic diffusion and cultural spread. However, the phylogeographic approach that is frequently used to infer language dispersal patterns has limitations, primarily because the phylogenetic tree cannot fully explain the language evolution induced by the horizontal contact among languages, such as borrowing and areal diffusion. Here, we introduce the language velocity field estimation, which does not rely on the phylogenetic tree, to infer language dispersal trajectories and centre. Its effectiveness and robustness are verified through both simulated and empirical validations. Using language velocity field estimation, we infer the dispersal patterns of four agricultural language families and groups, encompassing approximately 700 language samples. Our results show that the dispersal trajectories of these languages are primarily compatible with population movement routes inferred from ancient DNA and archaeological materials, and their dispersal centres are geographically proximate to ancient homelands of agricultural or Neolithic cultures. Our findings highlight that the agricultural languages dispersed alongside the demic diffusions and cultural spreads during the past 10,000 years. We expect that language velocity field estimation could aid the spatial analysis of language evolution and further branch out into the studies of demographic and cultural dynamics.
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Affiliation(s)
- Sizhe Yang
- State Key Laboratory of Genetic Engineering, Center for Evolutionary Biology, and Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Fudan University, Shanghai, 200438, China
| | - Xiaoru Sun
- Human Phenome Institute, Fudan University, Shanghai, 200438, China
- Ministry of Education Key Laboratory of Contemporary Anthropology, Department of Anthropology and Human Genetics, School of Life Sciences, Fudan University, Shanghai, 200438, China
| | - Li Jin
- State Key Laboratory of Genetic Engineering, Center for Evolutionary Biology, and Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Fudan University, Shanghai, 200438, China.
- Human Phenome Institute, Fudan University, Shanghai, 200438, China.
| | - Menghan Zhang
- Institute of Modern Languages and Linguistics, Fudan University, Shanghai, 200433, China.
- Research Institute of Intelligent Complex Systems, Fudan University, Shanghai, 200433, China.
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14
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Gavashelishvili A, Chukhua M, Sakhltkhutsishvili K, Koptekin D, Somel M. The time and place of origin of South Caucasian languages: insights into past human societies, ecosystems and human population genetics. Sci Rep 2023; 13:21133. [PMID: 38036582 PMCID: PMC10689496 DOI: 10.1038/s41598-023-45500-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2023] [Accepted: 10/20/2023] [Indexed: 12/02/2023] Open
Abstract
This study re-examines the linguistic phylogeny of the South Caucasian linguistic family (aka the Kartvelian linguistic family) and attempts to identify its Urheimat. We apply Bayesian phylogenetics to infer a dated phylogeny of the South Caucasian languages. We infer the Urheimat and the reasons for the split of the Kartvelian languages by taking into consideration (1) the past distribution ranges of wildlife elements whose names can be traced back to proto-Kartvelian roots, (2) the distribution ranges of past cultures and (3) the genetic variations of past and extant human populations. Our best-fit Bayesian phylogenetic model is in agreement with the widely accepted topology suggested by previous studies. However, in contrast to these studies, our model suggests earlier mean split dates, according to which the divergence between Svan and Karto-Zan occurred in the early Copper Age, while Georgian and Zan diverged in the early Iron Age. The split of Zan into Megrelian and Laz is widely attributed to the spread of Georgian and/or Georgian speakers in the seventh-eighth centuries CE. Our analyses place the Kartvelian Urheimat in an area that largely intersects the Colchis glacial refugium in the South Caucasus. The divergence of Kartvelian languages is strongly associated with differences in the rate of technological expansions in relation to landscape heterogeneity, as well as the emergence of state-run communities. Neolithic societies could not colonize dense forests, whereas Copper Age societies made limited progress in this regard, but not to the same degree of success achieved by Bronze and Iron Age societies. The paper also discusses the importance of glacial refugia in laying the foundation for linguistic families and where Indo-European languages might have originated.
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Affiliation(s)
- Alexander Gavashelishvili
- Center of Biodiversity Studies, Institute of Ecology, Ilia State University, Cholokashvili Str. 5, 0162, Tbilisi, Georgia.
| | - Merab Chukhua
- Head of the Institute of Caucasiology, Faculty of Humanities, Ivane Javakhishvili Tbilisi State University, Ilia Chavchavadze Str. 1, 0162, Tbilisi, Georgia
| | - Kakhi Sakhltkhutsishvili
- Georgian DNA Project, Family Tree DNA, Ilia State University, Cholokashvili Str. 5, 0162, Tbilisi, Georgia
| | - Dilek Koptekin
- Department of Biological Sciences, Middle East Technical University, 06800, Ankara, Turkey
| | - Mehmet Somel
- Department of Biological Sciences, Middle East Technical University, 06800, Ankara, Turkey
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15
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Tao Y, Wei Y, Ge J, Pan Y, Wang W, Bi Q, Sheng P, Fu C, Pan W, Jin L, Zheng HX, Zhang M. Phylogenetic evidence reveals early Kra-Dai divergence and dispersal in the late Holocene. Nat Commun 2023; 14:6924. [PMID: 37903755 PMCID: PMC10616200 DOI: 10.1038/s41467-023-42761-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2022] [Accepted: 10/18/2023] [Indexed: 11/01/2023] Open
Abstract
Studying language evolution brings a crucial perspective to bear on questions of human prehistory. As the most linguistically diverse region on earth, East and Southeast Asia have witnessed extensive sociocultural and ethnic contacts among different language communities. Especially, the Kra-Dai language family exhibits tremendous socio-cultural importance in these regions. Due to limited historical accounts, however, there are several controversies on their linguistic relatedness, ambiguities regarding the divergence time, and uncertainties on the dispersal patterns. To address these issues, here we apply Bayesian phylogenetic methods to analyze the largest lexical dataset containing 646 cognate sets compiled for 100 Kra-Dai languages. Our dated phylogenetic tree showed their initial divergence occurring approximately 4000 years BP. Phylogeographic results supported the early Kra-Dai language dispersal from the Guangxi-Guangdong area of South China towards Mainland Southeast Asia. Coupled with genetic, archaeological, paleoecologic, and paleoclimatic data, we demonstrated that the Kra-Dai language diversification could have coincided with their demic diffusion and agricultural spread shaped by the global climate change in the late Holocene. The interdisciplinary alignments shed light on reconstructing the prehistory of Kra-Dai languages and provide an indispensable piece of the puzzle for further studying prehistoric human activities in East and Southeast Asia.
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Affiliation(s)
- Yuxin Tao
- State Key Laboratory of Genetic Engineering, Center for Evolutionary Biology, Human Phenome Institute, Zhangjiang Fudan International Innovation Center, School of Life Science, Fudan University, Shanghai, 200438, China
| | - Yuancheng Wei
- School of Chinese Language and Literature, Guangxi Minzu University, Guangxi Zhuang Autonomous Region, Nanning, China
| | - Jiaqi Ge
- Department of Chinese Language and Literature, Fudan University, Shanghai, China
| | - Yan Pan
- Department of Cultural Heritage and Museology, Fudan University, Shanghai, China
| | - Wenmin Wang
- College of Nationalities, Guangdong Polytechnic Normal University, Guangzhou, China
| | - Qianqi Bi
- College of Communication, East China University of Political Science and Law, Shanghai, China
| | - Pengfei Sheng
- Institute of Archaeological Science, Fudan University, Shanghai, China
| | - Changzhong Fu
- College of Nationalities, Guangdong Polytechnic Normal University, Guangzhou, China
| | - Wuyun Pan
- Institute of Modern Languages and Linguistics, Fudan University, Shanghai, China
- Institute for Humanities and Social Science Data, School of Data Science, Fudan University, Shanghai, China
| | - Li Jin
- State Key Laboratory of Genetic Engineering, Center for Evolutionary Biology, Human Phenome Institute, Zhangjiang Fudan International Innovation Center, School of Life Science, Fudan University, Shanghai, 200438, China
| | - Hong-Xiang Zheng
- Ministry of Education Key Laboratory of Contemporary Anthropology, Department of Anthropology and Human Genetics, School of Life Sciences, Fudan University, Shanghai, China.
| | - Menghan Zhang
- Institute of Modern Languages and Linguistics, Fudan University, Shanghai, China.
- Ministry of Education Key Laboratory of Contemporary Anthropology, Department of Anthropology and Human Genetics, School of Life Sciences, Fudan University, Shanghai, China.
- Research Institute of Intelligent Complex Systems, Fudan University, Shanghai, China.
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16
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Claessens S, Kyritsis T, Atkinson QD. Cross-national analyses require additional controls to account for the non-independence of nations. Nat Commun 2023; 14:5776. [PMID: 37723194 PMCID: PMC10507061 DOI: 10.1038/s41467-023-41486-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2022] [Accepted: 09/06/2023] [Indexed: 09/20/2023] Open
Abstract
Cross-national analyses test hypotheses about the drivers of variation in national outcomes. However, since nations are connected in various ways, such as via spatial proximity and shared cultural ancestry, cross-national analyses often violate assumptions of non-independence, inflating false positive rates. Here, we show that, despite being recognised as an important statistical pitfall for over 200 years, cross-national research in economics and psychology still does not sufficiently account for non-independence. In a review of the 100 highest-cited cross-national studies of economic development and values, we find that controls for non-independence are rare. When studies do control for non-independence, our simulations suggest that most commonly used methods are insufficient for reducing false positives in non-independent data. In reanalyses of twelve previous cross-national correlations, half of the estimates are compatible with no association after controlling for non-independence using global proximity matrices. We urge social scientists to sufficiently control for non-independence in cross-national research.
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Affiliation(s)
- Scott Claessens
- School of Psychology, University of Auckland, Auckland, New Zealand.
| | - Thanos Kyritsis
- School of Psychology, University of Auckland, Auckland, New Zealand
| | - Quentin D Atkinson
- School of Psychology, University of Auckland, Auckland, New Zealand.
- School of Anthropology and Museum Ethnography, University of Oxford, Oxford, United Kingdom.
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17
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Woravatin W, Stoneking M, Srikummool M, Kampuansai J, Arias L, Kutanan W. South Asian maternal and paternal lineages in southern Thailand and the role of sex-biased admixture. PLoS One 2023; 18:e0291547. [PMID: 37708147 PMCID: PMC10501589 DOI: 10.1371/journal.pone.0291547] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2023] [Accepted: 08/31/2023] [Indexed: 09/16/2023] Open
Abstract
Previous genome-wide studies have reported South Asian (SA) ancestry in several Mainland Southeast Asian (MSEA) populations; however, additional details concerning population history, in particular the role of sex-specific aspects of the SA admixture in MSEA populations can be addressed with uniparental markers. Here, we generated ∼2.3 mB sequences of the male-specific portions of the Y chromosome (MSY) of a Tai-Kadai (TK)-speaking Southern Thai group (SouthernThai_TK), and complete mitochondrial (mtDNA) genomes of the SouthernThai_TK and an Austronesian (AN)-speaking Southern Thai (SouthernThai_AN) group. We identified new mtDNA haplogroups, e.g. Q3, E1a1a1, B4a1a and M7c1c3 that have not previously reported in Thai populations, but are frequent in Island Southeast Asia and Oceania, suggesting interactions between MSEA and these regions. SA prevalent mtDNA haplogroups were observed at frequencies of ~35-45% in the Southern Thai groups; both of them showed more genetic relatedness to Austroasiatic (AA) speaking Mon than to any other group. For MSY, SouthernThai_TK had ~35% SA prevalent haplogroups and exhibited closer genetic affinity to Central Thais. We also analyzed published data from other MSEA populations and observed SA ancestry in some additional MSEA populations that also reflects sex-biased admixture; in general, most AA- and AN-speaking groups in MSEA were closer to SA than to TK groups based on mtDNA, but the opposite pattern was observed for the MSY. Overall, our results of new genetic lineages and sex-biased admixture from SA to MSEA groups attest to the additional value that uniparental markers can add to studies of genome-wide variation.
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Affiliation(s)
- Wipada Woravatin
- Department of Biology, Faculty of Science, Khon Kaen University, Khon Kaen, Thailand
| | - Mark Stoneking
- Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
- Biométrie et Biologie Évolutive, UMR 5558, CNRS & Université de Lyon, Lyon, France
| | - Metawee Srikummool
- Department of Biochemistry, Faculty of Medical Science, Naresuan University, Phitsanulok, Thailand
| | - Jatupol Kampuansai
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai, Thailand
- Research Center in Bioresources for Agriculture, Industry and Medicine, Chiang Mai University, Chiang Mai, Thailand
| | - Leonardo Arias
- Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
- Centre for Linguistics, Faculty of Humanities, Leiden University, Leiden, The Netherlands
| | - Wibhu Kutanan
- Department of Biology, Faculty of Science, Khon Kaen University, Khon Kaen, Thailand
- Department of Biology, Faculty of Science, Naresuan University, Phitsanulok, Thailand
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18
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Heggarty P, Anderson C, Scarborough M, King B, Bouckaert R, Jocz L, Kümmel MJ, Jügel T, Irslinger B, Pooth R, Liljegren H, Strand RF, Haig G, Macák M, Kim RI, Anonby E, Pronk T, Belyaev O, Dewey-Findell TK, Boutilier M, Freiberg C, Tegethoff R, Serangeli M, Liosis N, Stroński K, Schulte K, Gupta GK, Haak W, Krause J, Atkinson QD, Greenhill SJ, Kühnert D, Gray RD. Language trees with sampled ancestors support a hybrid model for the origin of Indo-European languages. Science 2023; 381:eabg0818. [PMID: 37499002 DOI: 10.1126/science.abg0818] [Citation(s) in RCA: 15] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2021] [Accepted: 06/08/2023] [Indexed: 07/29/2023]
Abstract
The origins of the Indo-European language family are hotly disputed. Bayesian phylogenetic analyses of core vocabulary have produced conflicting results, with some supporting a farming expansion out of Anatolia ~9000 years before present (yr B.P.), while others support a spread with horse-based pastoralism out of the Pontic-Caspian Steppe ~6000 yr B.P. Here we present an extensive database of Indo-European core vocabulary that eliminates past inconsistencies in cognate coding. Ancestry-enabled phylogenetic analysis of this dataset indicates that few ancient languages are direct ancestors of modern clades and produces a root age of ~8120 yr B.P. for the family. Although this date is not consistent with the Steppe hypothesis, it does not rule out an initial homeland south of the Caucasus, with a subsequent branch northward onto the steppe and then across Europe. We reconcile this hybrid hypothesis with recently published ancient DNA evidence from the steppe and the northern Fertile Crescent.
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Affiliation(s)
- Paul Heggarty
- Departamento de Humanidades, Pontificia Universidad Católica del Perú, 15088 Lima, Peru
- Waves Group, Department of Human Behavior, Ecology and Culture, Max Planck Institute for Evolutionary Anthropology, 04103 Leipzig, Germany
- Department of Linguistic and Cultural Evolution, Max Planck Institute for Evolutionary Anthropology, 04103 Leipzig, Germany
| | - Cormac Anderson
- Department of Linguistic and Cultural Evolution, Max Planck Institute for Evolutionary Anthropology, 04103 Leipzig, Germany
| | - Matthew Scarborough
- Department of Linguistic and Cultural Evolution, Max Planck Institute for Evolutionary Anthropology, 04103 Leipzig, Germany
- Department of Nordic Studies and Linguistics, University of Copenhagen, S 2300 København, Denmark
| | - Benedict King
- Department of Linguistic and Cultural Evolution, Max Planck Institute for Evolutionary Anthropology, 04103 Leipzig, Germany
| | - Remco Bouckaert
- Centre for Computational Evolution, University of Auckland, Auckland 1010, New Zealand
| | - Lechosław Jocz
- Faculty of Humanities, Jacob of Paradies University, 66-400 Gorzów Wielkopolski, Poland
| | - Martin Joachim Kümmel
- Seminar for Indo-European Studies, Institut für Orientalistik, Indogermanistik, Ur- und Frühgeschichtliche Archäologie, Friedrich-Schiller-Universität Jena, 07743 Jena, Germany
| | - Thomas Jügel
- Center for Religious Studies (CERES), Ruhr University Bochum, 44789 Bochum, Germany
| | - Britta Irslinger
- Saxon Academy of Sciences and Humanities, 04107 Leipzig, Germany
| | - Roland Pooth
- Department of Linguistics, Ghent University, 9000 Ghent, Belgium
| | - Henrik Liljegren
- Department of Linguistics, Stockholm University, 10691 Stockholm, Sweden
| | | | - Geoffrey Haig
- Department of General Linguistics, University of Bamberg, 96047 Bamberg, Germany
| | | | - Ronald I Kim
- Department of Older Germanic Languages, Faculty of English, Adam Mickiewicz University in Poznań, 60-780 Poznań, Poland
| | - Erik Anonby
- School of Linguistics and Language Studies, Carleton University, Ottawa, ON K1S 5B6, Canada
- Leiden University Centre for Linguistics, 2300 RA Leiden, Netherlands
| | - Tijmen Pronk
- Leiden University Centre for Linguistics, 2300 RA Leiden, Netherlands
| | - Oleg Belyaev
- Department of Theoretical and Applied Linguistics, Lomonosov Moscow State University, 119991 GSP-1 Moscow, Russia
- Department of Iranian Languages, Institute of Linguistics RAS, Moscow 125009, Russia
| | - Tonya Kim Dewey-Findell
- Centre for the Study of the Viking Age, School of English, University of Nottingham NG7 2RD, UK
| | - Matthew Boutilier
- Department of German, Nordic, and Slavic, University of Wisconsin-Madison, Madison, WI 53706, USA
| | - Cassandra Freiberg
- Institut für deutsche Sprache und Linguistik, Sprach- und literaturwissenschaftliche Fakultät, Humboldt-Universität zu Berlin, 10099 Berlin, Germany
| | - Robert Tegethoff
- Department of Linguistic and Cultural Evolution, Max Planck Institute for Evolutionary Anthropology, 04103 Leipzig, Germany
- Seminar for Indo-European Studies, Institut für Orientalistik, Indogermanistik, Ur- und Frühgeschichtliche Archäologie, Friedrich-Schiller-Universität Jena, 07743 Jena, Germany
| | - Matilde Serangeli
- Seminar for Indo-European Studies, Institut für Orientalistik, Indogermanistik, Ur- und Frühgeschichtliche Archäologie, Friedrich-Schiller-Universität Jena, 07743 Jena, Germany
| | - Nikos Liosis
- Institute of Modern Greek Studies, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece
| | - Krzysztof Stroński
- Faculty of Modern Languages, Adam Mickiewicz University in Poznań, 61-874 Poznań, Poland
| | - Kim Schulte
- Department of Translation and Communication, Jaume I University, 12006 Castelló de la Plana, Spain
| | - Ganesh Kumar Gupta
- Faculty of Modern Languages, Adam Mickiewicz University in Poznań, 61-874 Poznań, Poland
| | - Wolfgang Haak
- Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, 04103 Leipzig, Germany
| | - Johannes Krause
- Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, 04103 Leipzig, Germany
| | - Quentin D Atkinson
- School of Psychology, University of Auckland, Auckland 1010, New Zealand
- Centre for the Study of Social Cohesion, University of Oxford, Oxford OX2 6PN, UK
| | - Simon J Greenhill
- Department of Linguistic and Cultural Evolution, Max Planck Institute for Evolutionary Anthropology, 04103 Leipzig, Germany
- ARC Center of Excellence for the Dynamics of Language, ANU College of Asia and the Pacific, The Australian National University, Canberra, ACT 2600, Australia
| | - Denise Kühnert
- Transmission, Infection, Diversification and Evolution Group, Max Planck Institute of Geoanthropology, 07745 Jena, Germany
| | - Russell D Gray
- Department of Linguistic and Cultural Evolution, Max Planck Institute for Evolutionary Anthropology, 04103 Leipzig, Germany
- School of Psychology, University of Auckland, Auckland 1010, New Zealand
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19
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Pichkar Y, Creanza N. Fine-scale cultural variation reinforces genetic structure in England. AMERICAN JOURNAL OF BIOLOGICAL ANTHROPOLOGY 2023. [PMID: 37377289 DOI: 10.1002/ajpa.24789] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/01/2023] [Revised: 04/11/2023] [Accepted: 05/24/2023] [Indexed: 06/29/2023]
Abstract
OBJECTIVES Genes and languages both contain signatures of human evolution, population movement, and demographic history. Cultural traits like language are transmitted by interactions between people, and these traits influence how people interact. In particular, if groups of people differentiate each other based on some qualities of their cultures, and if these qualities are passed to the next generation, then this differentiation can result in barriers to gene flow. Previous work finds such barriers to gene flow between groups that speak different languages, and we explore this phenomenon further: can more subtle cultural differences also produce genetic structure in a population? We focus on whether subtle, dialect-level linguistic differences in England have influenced genetic population structure, likely by affecting mating preferences. MATERIALS AND METHODS We analyze spatially dense linguistic and genetic data-both of which independently contain spatially structured variation in England-to examine whether the cultural differences represented by variation in English phonology colocalize with higher genetic rates of change. RESULTS We find that genetic variation and dialect markers have similar spatial distributions on a country-wide scale, and that throughout England, linguistic boundaries colocalize with the boundaries of genetic clusters found using fineSTRUCTURE. DISCUSSION This gene-language covariation, in the absence of geographic barriers that could coordinate cultural and genetic differentiation, suggests that similar social forces influenced both dialect boundaries and the genetic population structure of England.
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Affiliation(s)
- Yakov Pichkar
- Department of Biological Sciences, Vanderbilt University, Nashville, Tennessee, USA
- Evolutionary Studies Initiative, Vanderbilt University, Nashville, Tennessee, USA
| | - Nicole Creanza
- Department of Biological Sciences, Vanderbilt University, Nashville, Tennessee, USA
- Evolutionary Studies Initiative, Vanderbilt University, Nashville, Tennessee, USA
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20
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Dediu D. Ultraviolet light affects the color vocabulary: evidence from 834 languages. Front Psychol 2023; 14:1143283. [PMID: 37333596 PMCID: PMC10273402 DOI: 10.3389/fpsyg.2023.1143283] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2023] [Accepted: 05/02/2023] [Indexed: 06/20/2023] Open
Abstract
It has been suggested that people living in regions with a high incidence of ultraviolet light, particularly in the B band (UV-B), suffer a phototoxic effect during their lifetime. This effect, known as lens brunescence, negatively impacts the perception of visible light in the "blue" part of the spectrum, which, in turn, reduces the probability that the lexicon of languages spoken in such regions contains a word specifically denoting "blue." This hypothesis has been recently tested using a database of 142 unique populations/languages using advanced statistical methods, finding strong support. Here, this database is extended to 834 unique populations/languages in many more language families (155 vs. 32) and with a much better geographical spread, ensuring a much better representativity of the present-day linguistic diversity. Applying similar statistical methods, supplemented with novel piecewise and latent variable Structural Equation Models and phylogenetic methods made possible by the much denser sampling of large language families, found strong support for the original hypothesis, namely that there is a negative linear effect of UV-B incidence on the probability that a language has a specific word for "blue." Such extensions are essential steps in the scientific process and, in this particular case, help increase our confidence in the proposal that the environment (here, UV-B incidence) affects language (here, the color lexicon) through its individual-level physiological effects (lifetime exposure and lens brunescence) amplified by the repeated use and transmission of language across generations.
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Affiliation(s)
- Dan Dediu
- Department of Catalan Philology and General Linguistics, University of Barcelona, Barcelona, Spain
- Universitat de Barcelona Institute of Complex Systems (UBICS), Barcelona, Spain
- Catalan Institute for Research and Advanced Studies (ICREA), Barcelona, Spain
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21
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Passmore S, Barth W, Greenhill SJ, Quinn K, Sheard C, Argyriou P, Birchall J, Bowern C, Calladine J, Deb A, Diederen A, Metsäranta NP, Araujo LH, Schembri R, Hickey-Hall J, Honkola T, Mitchell A, Poole L, Rácz PM, Roberts SG, Ross RM, Thomas-Colquhoun E, Evans N, Jordan FM. Kinbank: A global database of kinship terminology. PLoS One 2023; 18:e0283218. [PMID: 37224178 DOI: 10.1371/journal.pone.0283218] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2022] [Accepted: 03/03/2023] [Indexed: 05/26/2023] Open
Abstract
For a single species, human kinship organization is both remarkably diverse and strikingly organized. Kinship terminology is the structured vocabulary used to classify, refer to, and address relatives and family. Diversity in kinship terminology has been analyzed by anthropologists for over 150 years, although recurrent patterning across cultures remains incompletely explained. Despite the wealth of kinship data in the anthropological record, comparative studies of kinship terminology are hindered by data accessibility. Here we present Kinbank, a new database of 210,903 kinterms from a global sample of 1,229 spoken languages. Using open-access and transparent data provenance, Kinbank offers an extensible resource for kinship terminology, enabling researchers to explore the rich diversity of human family organization and to test longstanding hypotheses about the origins and drivers of recurrent patterns. We illustrate our contribution with two examples. We demonstrate strong gender bias in the phonological structure of parent terms across 1,022 languages, and we show that there is no evidence for a coevolutionary relationship between cross-cousin marriage and bifurcate-merging terminology in Bantu languages. Analysing kinship data is notoriously challenging; Kinbank aims to eliminate data accessibility issues from that challenge and provide a platform to build an interdisciplinary understanding of kinship.
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Affiliation(s)
- Sam Passmore
- Evolution of Cultural Diversity Initiative (ECDI), Australian National University, Canberra, ACT, Australia
- Department of Anthropology and Archaeology, University of Bristol, Bristol, United Kingdom
- Faculty of Environment and Information Studies, Keio University, Fujisawa, Japan
| | - Wolfgang Barth
- ARC Centre of Excellence for the Dynamics of Language (CoEDL), Australian National University, Canberra, ACT, Australia
| | - Simon J Greenhill
- School of Biological Sciences, University of Auckland, Auckland, New Zealand
- Department of Linguistic and Cultural Evolution, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
| | - Kyla Quinn
- ARC Centre of Excellence for the Dynamics of Language (CoEDL), Australian National University, Canberra, ACT, Australia
| | - Catherine Sheard
- Department of Anthropology and Archaeology, University of Bristol, Bristol, United Kingdom
- School of Earth Sciences, University of Bristol, Bristol, United Kingdom
| | - Paraskevi Argyriou
- School of Biological and Behavioural Sciences, Queen Mary University of London, London, United Kingdom
| | - Joshua Birchall
- Museu Paraense Emílio Goeldi, Belém, Pará, Brazil
- Department of Linguistics, The University of New Mexico, New Mexico, United States of America
| | - Claire Bowern
- Department of Linguistics, Yale University, New Haven, Connecticut, United States of America
| | - Jasmine Calladine
- Department of Anthropology and Archaeology, University of Bristol, Bristol, United Kingdom
- Department of Human Behavior, Ecology and Culture, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
| | - Angarika Deb
- Department of Anthropology and Archaeology, University of Bristol, Bristol, United Kingdom
- Department of Cognitive Science, Central European University, Vienna, Austria
| | - Anouk Diederen
- Max Planck Institute for Psycholinguistics, Nijmegen, Netherlands
| | - Niklas P Metsäranta
- Department of Finnish, Finno-Ugrian, and Scandinavian Studies, University of Helsinki, Helsinki, Finland
| | | | - Rhiannon Schembri
- Research School of Biology, Ecology, and Evolution, Australian National University, Canberra, ACT, Australia
| | - Jo Hickey-Hall
- Department of Anthropology and Archaeology, University of Bristol, Bristol, United Kingdom
| | - Terhi Honkola
- Department of Anthropology and Archaeology, University of Bristol, Bristol, United Kingdom
- Department of Finnish, Finno-Ugrian, and Scandinavian Studies, University of Helsinki, Helsinki, Finland
| | - Alice Mitchell
- Department of Anthropology and Archaeology, University of Bristol, Bristol, United Kingdom
- Institute for African Studies, University of Cologne, Cologne, Germany
| | - Lucy Poole
- Department of Anthropology and Archaeology, University of Bristol, Bristol, United Kingdom
| | - Péter M Rácz
- Department of Anthropology and Archaeology, University of Bristol, Bristol, United Kingdom
- Cognitive Science Department, Budapest University of Technology and Economics, Budapest, Hungary
| | - Sean G Roberts
- Department of Anthropology and Archaeology, University of Bristol, Bristol, United Kingdom
- School of English, Communications and Philosophy, Cardiff University, Cardiff, United Kingdom
| | - Robert M Ross
- School of Psychological Sciences, Macquarie University, Sydney, NSW, Australia
| | - Ewan Thomas-Colquhoun
- Department of Anthropology and Archaeology, University of Bristol, Bristol, United Kingdom
| | - Nicholas Evans
- Evolution of Cultural Diversity Initiative (ECDI), Australian National University, Canberra, ACT, Australia
- ARC Centre of Excellence for the Dynamics of Language (CoEDL), Australian National University, Canberra, ACT, Australia
| | - Fiona M Jordan
- Department of Anthropology and Archaeology, University of Bristol, Bristol, United Kingdom
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22
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Changmai P, Phongbunchoo Y, Kočí J, Flegontov P. Reanalyzing the genetic history of Kra-Dai speakers from Thailand and new insights into their genetic interactions beyond Mainland Southeast Asia. Sci Rep 2023; 13:8371. [PMID: 37225753 DOI: 10.1038/s41598-023-35507-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2022] [Accepted: 05/19/2023] [Indexed: 05/26/2023] Open
Abstract
Thailand is a country where over 60 languages from five language families (Austroasiatic, Austronesian, Hmong-Mien, Kra-Dai, and Sino-Tibetan) are spoken. The Kra-Dai language family is the most prevalent, and Thai, the official language of the country, belongs to it. Previous genome-wide studies on Thailand populations revealed a complex population structure and put some hypotheses forward concerning the population history of the country. However, many published populations have not been co-analyzed, and some aspects of population history were not explored adequately. In this study, we employ new methods to re-analyze published genome-wide genetic data on Thailand populations, with a focus on 14 Kra-Dai-speaking groups. Our analyses reveal South Asian ancestry in Kra-Dai-speaking Lao Isan and Khonmueang, and in Austroasiatic-speaking Palaung, in contrast to a previous study in which the data were generated. We support the admixture scenario for the formation of Kra-Dai-speaking groups from Thailand who harbor both Austroasiatic-related ancestry and Kra-Dai-related ancestry from outside of Thailand. We also provide evidence of bidirectional admixture between Southern Thai and Nayu, an Austronesian-speaking group from Southern Thailand. Challenging some previously reported genetic analyses, we reveal a close genetic relationship between Nayu and Austronesian-speaking groups from Island Southeast Asia (ISEA).
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Affiliation(s)
- Piya Changmai
- Department of Biology and Ecology, Faculty of Science, University of Ostrava, Ostrava, Czech Republic.
| | - Yutthaphong Phongbunchoo
- Department of Biology and Ecology, Faculty of Science, University of Ostrava, Ostrava, Czech Republic
| | - Jan Kočí
- Department of Biology and Ecology, Faculty of Science, University of Ostrava, Ostrava, Czech Republic
| | - Pavel Flegontov
- Department of Biology and Ecology, Faculty of Science, University of Ostrava, Ostrava, Czech Republic.
- Department of Human Evolutionary Biology, Harvard University, Cambridge, MA, USA.
- Kalmyk Research Center of the Russian Academy of Sciences, Elista, Kalmykia, Russia.
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23
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Liu D, Ko AMS, Stoneking M. The genomic diversity of Taiwanese Austronesian groups: Implications for the "Into- and Out-of-Taiwan" models. PNAS NEXUS 2023; 2:pgad122. [PMID: 37200801 PMCID: PMC10187666 DOI: 10.1093/pnasnexus/pgad122] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/06/2023] [Revised: 03/29/2023] [Accepted: 03/30/2023] [Indexed: 05/20/2023]
Abstract
The origin and dispersal of the Austronesian language family, one of the largest and most widespread in the world, have long attracted the attention of linguists, archaeologists, and geneticists. Even though there is a growing consensus that Taiwan is the source of the spread of Austronesian languages, little is known about the migration patterns of the early Austronesians who settled in and left Taiwan, i.e. the "Into-Taiwan" and "out-of-Taiwan" events. In particular, the genetic diversity and structure within Taiwan and how this relates to the into-/out-of-Taiwan events are largely unexplored, primarily because most genomic studies have largely utilized data from just two of the 16 recognized Highland Austronesian groups in Taiwan. In this study, we generated the largest genome-wide data set of Taiwanese Austronesians to date, including six Highland groups and one Lowland group from across the island and two Taiwanese Han groups. We identified fine-scale genomic structure in Taiwan, inferred the ancestry profile of the ancestors of Austronesians, and found that the southern Taiwanese Austronesians show excess genetic affinities with the Austronesians outside of Taiwan. Our findings thus shed new light on the Into- and Out-of-Taiwan dispersals.
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Affiliation(s)
- Dang Liu
- To whom correspondence should be addressed: ;
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24
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Markov I, Kharitonova K, Grigorenko EL. Language: Its Origin and Ongoing Evolution. J Intell 2023; 11:61. [PMID: 37103246 PMCID: PMC10142271 DOI: 10.3390/jintelligence11040061] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2023] [Revised: 03/17/2023] [Accepted: 03/23/2023] [Indexed: 03/31/2023] Open
Abstract
With the present paper, we sought to use research findings to illustrate the following thesis: the evolution of language follows the principles of human evolution. We argued that language does not exist for its own sake, it is one of a multitude of skills that developed to achieve a shared communicative goal, and all its features are reflective of this. Ongoing emerging language adaptations strive to better fit the present state of the human species. Theories of language have evolved from a single-modality to multimodal, from human-specific to usage-based and goal-driven. We proposed that language should be viewed as a multitude of communication techniques that have developed and are developing in response to selective pressure. The precise nature of language is shaped by the needs of the species (arguably, uniquely H. sapiens) utilizing it, and the emergence of new situational adaptations, as well as new forms and types of human language, demonstrates that language includes an act driven by a communicative goal. This article serves as an overview of the current state of psycholinguistic research on the topic of language evolution.
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Affiliation(s)
- Ilia Markov
- Department of Psychology, University of Houston, Houston, TX 77204, USA
- Texas Institute for Measurement, Evaluation, and Statistics (TIMES), The University of Houston, Houston, TX 77204, USA
- Center for Cognitive Sciences, Sirius University for Science and Technology, Sochi 354340, Russia
| | | | - Elena L. Grigorenko
- Department of Psychology, University of Houston, Houston, TX 77204, USA
- Texas Institute for Measurement, Evaluation, and Statistics (TIMES), The University of Houston, Houston, TX 77204, USA
- Center for Cognitive Sciences, Sirius University for Science and Technology, Sochi 354340, Russia
- Baylor College of Medicine, Houston, TX 77030, USA
- Child Study Center and Haskins Laboratories, Yale University, New Haven, CT 06520, USA
- Rector’s Office, Moscow State University for Psychology and Education, Moscow 127051, Russia
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25
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Mologni F, Burns KC. The island biogeography of human population size. Proc Biol Sci 2023; 290:20222084. [PMID: 36651052 PMCID: PMC9845981 DOI: 10.1098/rspb.2022.2084] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2022] [Accepted: 12/19/2022] [Indexed: 01/19/2023] Open
Abstract
For decades, biogeographers have sought a better understanding of how organisms are distributed among islands. However, the island biogeography of humans remains largely unknown. Here, we investigate how human population size varies among 486 islands at two spatial scales. At a global scale, we tested whether population size increases with island area and declines with island elevation and nearest mainland, as is common in non-human species, or whether humans escape such biogeographic constraints. At a regional scale, we tested whether population sizes vary among islands within archipelagos according to the positioning of different cultural source pools. Results illustrate that on a global scale, human populations increased in size with island area, similar to non-human species, yet they did not decline in size with elevation and distance to nearest mainland. At a regional scale, human population size often varied among islands within archipelagos relative to the location of different cultural source pools. Despite broad-scale similarities in the geographical distribution of human and non-human species among islands, results from this study indicate that the island biogeography of humans may also be influenced by archipelago-specific social, political and historical circumstances.
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Affiliation(s)
- Fabio Mologni
- Department of Biology, University of British Columbia Okanagan, 1177 Research Road, Kelowna, British Columbia, Canada V1V 1V7
- School of Biological Sciences, Victoria University of Wellington, PO Box 600, Wellington 6012, New Zealand
| | - Kevin C. Burns
- School of Biological Sciences, Victoria University of Wellington, PO Box 600, Wellington 6012, New Zealand
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26
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Sheehan O, Watts J, Gray RD, Bulbulia J, Claessens S, Ringen EJ, Atkinson QD. Coevolution of religious and political authority in Austronesian societies. Nat Hum Behav 2023; 7:38-45. [PMID: 36357777 PMCID: PMC9883158 DOI: 10.1038/s41562-022-01471-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2020] [Accepted: 09/22/2022] [Indexed: 11/12/2022]
Abstract
Authority, an institutionalized form of social power, is one of the defining features of the large-scale societies that evolved during the Holocene. Religious and political authority have deep histories in human societies and are clearly interdependent, but the nature of their relationship and its evolution over time is contested. We purpose-built an ethnographic dataset of 97 Austronesian societies and used phylogenetic methods to address two long-standing questions about the evolution of religious and political authority: first, how these two institutions have coevolved, and second, whether religious and political authority have tended to become more or less differentiated. We found evidence for mutual interdependence between religious and political authority but no evidence for or against a long-term pattern of differentiation or unification in systems of religious and political authority. Our results provide insight into how political and religious authority have worked synergistically over millennia during the evolution of large-scale societies.
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Affiliation(s)
- Oliver Sheehan
- Department of Linguistic and Cultural Evolution, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany.
| | - Joseph Watts
- grid.419518.00000 0001 2159 1813Department of Linguistic and Cultural Evolution, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany ,grid.29980.3a0000 0004 1936 7830Religion Programme, University of Otago, Dunedin, New Zealand ,grid.29980.3a0000 0004 1936 7830Centre for Research on Evolution, Belief, and Behaviour, University of Otago, Dunedin, New Zealand
| | - Russell D. Gray
- grid.419518.00000 0001 2159 1813Department of Linguistic and Cultural Evolution, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany ,grid.9654.e0000 0004 0372 3343School of Psychology, University of Auckland, Auckland, New Zealand
| | - Joseph Bulbulia
- grid.9654.e0000 0004 0372 3343School of Humanities, University of Auckland, Auckland, New Zealand ,grid.267827.e0000 0001 2292 3111School of Psychology, Victoria University of Wellington, Wellington, New Zealand
| | - Scott Claessens
- grid.9654.e0000 0004 0372 3343School of Psychology, University of Auckland, Auckland, New Zealand
| | - Erik J. Ringen
- grid.189967.80000 0001 0941 6502Department of Anthropology, Emory University, Atlanta, GA USA
| | - Quentin D. Atkinson
- grid.419518.00000 0001 2159 1813Department of Linguistic and Cultural Evolution, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany ,grid.9654.e0000 0004 0372 3343School of Psychology, University of Auckland, Auckland, New Zealand
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27
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Takahashi T, Ihara Y. Spatial evolution of human cultures inferred through Bayesian phylogenetic analysis. J R Soc Interface 2023; 20:20220543. [PMID: 36596455 PMCID: PMC9810426 DOI: 10.1098/rsif.2022.0543] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2022] [Accepted: 12/07/2022] [Indexed: 01/05/2023] Open
Abstract
Spatial distribution of human culture reflects both descent from the common ancestor and horizontal transmission among neighbouring populations. To analyse empirically documented geographical variations in cultural repertoire, we will describe a framework for Bayesian statistics in a spatially explicit model. To consider both horizontal transmission and mutation of the cultural trait in question, our method employs a network model in which populations are represented by nodes. Using algorithms borrowed from Bayesian phylogenetic analysis, we will perform a Markov chain Monte Carlo (MCMC) method to compute the posterior distributions of parameters, such as the rate of horizontal transmission and the mutation rates among trait variants, as well as the identity of trait variants in unobserved populations. Besides the inference of model parameters, our method enables the reconstruction of the genealogical tree of the focal trait, provided that the mutation rate is sufficiently small. We will also describe a heuristic algorithm to reduce the dimension of the parameter space explored in the MCMC method, where we simulate the coalescent process in the network of populations. Numerical examples show that our algorithms compute the posterior distribution of model parameters within a practical computation time, although the posterior distribution tends to be broad if we use uninformative priors.
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Affiliation(s)
- Takuya Takahashi
- Meiji Institute for Advanced Study of Mathematical Sciences (MIMS), Meiji University, Nakano 4-21-1, Nakanoku, Tokyo 164-8525, Japan
| | - Yasuo Ihara
- Department of Biological Sciences, the University of Tokyo, Hongo 7-3-1, Bunkyoku, Tokyo 113-0033, Japan
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28
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Barbieri C, Blasi DE, Arango-Isaza E, Sotiropoulos AG, Hammarström H, Wichmann S, Greenhill SJ, Gray RD, Forkel R, Bickel B, Shimizu KK. A global analysis of matches and mismatches between human genetic and linguistic histories. Proc Natl Acad Sci U S A 2022; 119:e2122084119. [PMID: 36399547 PMCID: PMC9704691 DOI: 10.1073/pnas.2122084119] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2021] [Accepted: 10/10/2022] [Indexed: 10/14/2023] Open
Abstract
Human history is written in both our genes and our languages. The extent to which our biological and linguistic histories are congruent has been the subject of considerable debate, with clear examples of both matches and mismatches. To disentangle the patterns of demographic and cultural transmission, we need a global systematic assessment of matches and mismatches. Here, we assemble a genomic database (GeLaTo, or Genes and Languages Together) specifically curated to investigate genetic and linguistic diversity worldwide. We find that most populations in GeLaTo that speak languages of the same language family (i.e., that descend from the same ancestor language) are also genetically highly similar. However, we also identify nearly 20% mismatches in populations genetically close to linguistically unrelated groups. These mismatches, which occur within the time depth of known linguistic relatedness up to about 10,000 y, are scattered around the world, suggesting that they are a regular outcome in human history. Most mismatches result from populations shifting to the language of a neighboring population that is genetically different because of independent demographic histories. In line with the regularity of such shifts, we find that only half of the language families in GeLaTo are genetically more cohesive than expected under spatial autocorrelations. Moreover, the genetic and linguistic divergence times of population pairs match only rarely, with Indo-European standing out as the family with most matches in our sample. Together, our database and findings pave the way for systematically disentangling demographic and cultural history and for quantifying processes of shifts in language and social identities on a global scale.
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Affiliation(s)
- Chiara Barbieri
- Department of Evolutionary Biology and Environmental Studies, University of Zurich, Zurich 8057, Switzerland
- Center for the Interdisciplinary Study of Language Evolution, University of Zurich, Zurich 8050, Switzerland
- Department of Linguistic and Cultural Evolution, Max Planck Institute for Evolutionary Anthropology, Leipzig 04103, Germany
| | - Damián E. Blasi
- Department of Linguistic and Cultural Evolution, Max Planck Institute for Evolutionary Anthropology, Leipzig 04103, Germany
- Department of Human Evolutionary Biology, Harvard University, Cambridge, MA 02134
- Human Relations Area Files, Yale University, New Haven, CT 06511-1225
| | - Epifanía Arango-Isaza
- Department of Evolutionary Biology and Environmental Studies, University of Zurich, Zurich 8057, Switzerland
- Center for the Interdisciplinary Study of Language Evolution, University of Zurich, Zurich 8050, Switzerland
| | | | - Harald Hammarström
- Department of Linguistics and Philology, University of Uppsala, Uppsala 75126, Sweden
| | - Søren Wichmann
- Cluster of Excellence ROOTS, Kiel University, Kiel 24118, Germany
| | - Simon J. Greenhill
- Department of Linguistic and Cultural Evolution, Max Planck Institute for Evolutionary Anthropology, Leipzig 04103, Germany
- School of Biological Sciences, University of Auckland, Auckland 1010, New Zealand
| | - Russell D. Gray
- Department of Linguistic and Cultural Evolution, Max Planck Institute for Evolutionary Anthropology, Leipzig 04103, Germany
| | - Robert Forkel
- Department of Linguistic and Cultural Evolution, Max Planck Institute for Evolutionary Anthropology, Leipzig 04103, Germany
| | - Balthasar Bickel
- Center for the Interdisciplinary Study of Language Evolution, University of Zurich, Zurich 8050, Switzerland
- Department of Comparative Language Science, University of Zurich, Zurich 8050, Switzerland
| | - Kentaro K. Shimizu
- Department of Evolutionary Biology and Environmental Studies, University of Zurich, Zurich 8057, Switzerland
- Center for the Interdisciplinary Study of Language Evolution, University of Zurich, Zurich 8050, Switzerland
- Kihara Institute for Biological Research, Yokohama City University, 244-0813, Yokohama, Japan
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29
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Arauna LR, Bergstedt J, Choin J, Mendoza-Revilla J, Harmant C, Roux M, Mas-Sandoval A, Lémée L, Colleran H, François A, Valentin F, Cassar O, Gessain A, Quintana-Murci L, Patin E. The genomic landscape of contemporary western Remote Oceanians. Curr Biol 2022; 32:4565-4575.e6. [PMID: 36108636 DOI: 10.1016/j.cub.2022.08.055] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2022] [Revised: 07/01/2022] [Accepted: 08/18/2022] [Indexed: 11/25/2022]
Abstract
The Vanuatu archipelago served as a gateway to Remote Oceania during one of the most extensive human migrations to uninhabited lands ∼3,000 years ago. Ancient DNA studies suggest an initial settlement by East Asian-related peoples that was quickly followed by the arrival of Papuan-related populations, leading to a major population turnover. Yet there is uncertainty over the population processes and the sociocultural factors that have shaped the genomic diversity of ni-Vanuatu, who present nowadays among the world's highest linguistic and cultural diversity. Here, we report new genome-wide data for 1,433 contemporary ni-Vanuatu from 29 different islands, including 287 couples. We find that ni-Vanuatu derive their East Asian- and Papuan-related ancestry from the same source populations and descend from relatively synchronous, sex-biased admixture events that occurred ∼1,700-2,300 years ago, indicating a peopling history common to the whole archipelago. However, East Asian-related ancestry proportions differ markedly across islands, suggesting that the Papuan-related population turnover was geographically uneven. Furthermore, we detect Polynesian ancestry arriving ∼600-1,000 years ago to Central and South Vanuatu in both Polynesian-speaking and non-Polynesian-speaking populations. Last, we provide evidence for a tendency of spouses to carry similar genetic ancestry, when accounting for relatedness avoidance. The signal is not driven by strong genetic effects of specific loci or trait-associated variants, suggesting that it results instead from social assortative mating. Altogether, our findings provide an insight into both the genetic history of ni-Vanuatu populations and how sociocultural processes have shaped the diversity of their genomes.
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Affiliation(s)
- Lara R Arauna
- Institut Pasteur, Université Paris Cité, CNRS UMR2000, Human Evolutionary Genetics Unit, Paris 75015, France.
| | - Jacob Bergstedt
- Institut Pasteur, Université Paris Cité, CNRS UMR2000, Human Evolutionary Genetics Unit, Paris 75015, France; Institute of Environmental Medicine, Karolinska Institutet, Stockholm 171 77, Sweden; Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm 171 77, Sweden
| | - Jeremy Choin
- Institut Pasteur, Université Paris Cité, CNRS UMR2000, Human Evolutionary Genetics Unit, Paris 75015, France; Chair Human Genomics and Evolution, Collège de France, Paris 75005, France
| | - Javier Mendoza-Revilla
- Institut Pasteur, Université Paris Cité, CNRS UMR2000, Human Evolutionary Genetics Unit, Paris 75015, France; Laboratorios de Investigación y Desarrollo, Facultad de Ciencias y Filosofía, Universidad Peruana Cayetano Heredia, Lima, Perú
| | - Christine Harmant
- Institut Pasteur, Université Paris Cité, CNRS UMR2000, Human Evolutionary Genetics Unit, Paris 75015, France
| | - Maguelonne Roux
- Institut Pasteur, Université Paris Cité, CNRS UMR2000, Human Evolutionary Genetics Unit, Paris 75015, France; Bioinformatics and Biostatistics Hub, Institut Pasteur, Université Paris Cité, Paris 75015, France
| | - Alex Mas-Sandoval
- Department of Life Sciences, Imperial College London, Ascot SL5 7PY, UK
| | - Laure Lémée
- Institut Pasteur, Biomics Platform, Paris 75015, France
| | - Heidi Colleran
- BirthRites Independent Max Planck Research Group, Department of Human Behavior, Ecology, and Culture, Max Planck Institute for Evolutionary Anthropology, Leipzig 04103, Germany
| | - Alexandre François
- Langues, Textes, Traitements Informatiques, Cognition (LaTTiCe), UMR 8094, CNRS, Paris 75015, France
| | | | - Olivier Cassar
- Institut Pasteur, Université Paris Cité, CNRS UMR 3569, Oncogenic Virus Epidemiology and Pathophysiology Unit, Paris 75015, France
| | - Antoine Gessain
- Institut Pasteur, Université Paris Cité, CNRS UMR 3569, Oncogenic Virus Epidemiology and Pathophysiology Unit, Paris 75015, France
| | - Lluis Quintana-Murci
- Institut Pasteur, Université Paris Cité, CNRS UMR2000, Human Evolutionary Genetics Unit, Paris 75015, France; Chair Human Genomics and Evolution, Collège de France, Paris 75005, France.
| | - Etienne Patin
- Institut Pasteur, Université Paris Cité, CNRS UMR2000, Human Evolutionary Genetics Unit, Paris 75015, France.
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30
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Rodriguez JJRB, Cuales JMD, Herrera MJB, Zubiri LAM, Muallil RN, Ishmael AI, Jimenez EB, Stoneking M, De Ungria MCA. Ethical challenges in genetic research among Philippine Indigenous Peoples: Insights from fieldwork in Zamboanga and the Sulu Archipelago. Front Genet 2022; 13:901515. [PMID: 36324515 PMCID: PMC9619191 DOI: 10.3389/fgene.2022.901515] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2022] [Accepted: 09/21/2022] [Indexed: 09/07/2024] Open
Abstract
The Philippines, with the recent discovery of an archaic hominin in Luzon and an extensive ethnolinguistic diversity of more than 100 Indigenous peoples, is crucial to understanding human evolution and population history in Island Southeast Asia. Advances in DNA sequencing technologies enable the rapid generation of genomic data to robustly address questions about origins, relatedness, and population movements. With the increased genetic sampling in the country, especially by international scientists, it is vital to revisit ethical rules and guidelines relevant to conducting research among Indigenous peoples. Our team led fieldwork expeditions between 2019 and February 2020 in Zamboanga and the Sulu Archipelago, a chain of islands connecting the Mindanao and Borneo landmasses. The trips concluded with a collection of 2,149 DNA samples from 104 field sites. We present our fieldwork experience among the mostly sea-oriented Sama-Bajaw and Tausug-speaking communities and propose recommendations to address the ethical challenges of conducting such research. This work contributes toward building an enabling research environment in the Philippines that respects the rights and autonomy of Indigenous peoples, who are the rightful owners of their DNA and all genetic information contained therein.
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Affiliation(s)
- Jae Joseph Russell B. Rodriguez
- DNA Analysis Laboratory, Natural Sciences Research Institute, College of Science, University of the Philippines Diliman, Quezon City, Philippines
- Genetic and Molecular Biology Division, Institute of Biological Sciences, College of Arts and Sciences, University of the Philippines Los Baños, Laguna, Philippines
- Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
| | - John Meldwin D. Cuales
- DNA Analysis Laboratory, Natural Sciences Research Institute, College of Science, University of the Philippines Diliman, Quezon City, Philippines
| | | | | | - Richard N. Muallil
- Office of Continuing Education and Extension Services, Mindanao State University—Tawi-Tawi College of Technology and Oceanography, Tawi-Tawi, Philippines
| | - Altan I. Ishmael
- Sama Studies Center, Mindanao State University—Tawi-Tawi College of Technology and Oceanography, Tawi-Tawi, Philippines
| | - Edlyn B. Jimenez
- National Institutes of Health, University of the Philippines Manila, Manila City, Philippines
| | - Mark Stoneking
- Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
- Universite Lyon 1, CNRS, Laboratoire de Biometrie et Biologie Evolutive, Villeurbanne, France
| | - Maria Corazon A. De Ungria
- DNA Analysis Laboratory, Natural Sciences Research Institute, College of Science, University of the Philippines Diliman, Quezon City, Philippines
- Program on Biodiversity, Ethnicity, and Forensics, Philippine Genome Center, University of the Philippines, Quezon City, Philippines
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31
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Amis Pacilo and Yami Cipoho are not the same as the Pacific breadfruit starch crop—Target enrichment phylogenomics of a long-misidentified Artocarpus species sheds light on the northward Austronesian migration from the Philippines to Taiwan. PLoS One 2022; 17:e0272680. [PMID: 36178903 PMCID: PMC9524695 DOI: 10.1371/journal.pone.0272680] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2022] [Accepted: 09/10/2022] [Indexed: 11/23/2022] Open
Abstract
‘Breadfruit’ is a common tree species in Taiwan. In the indigenous Austronesian Amis culture of eastern Taiwan, ‘breadfruit’ is known as Pacilo, and its fruits are consumed as food. On Lanyu (Botel Tobago) where the indigenous Yami people live, ‘breadfruit’ is called Cipoho and used for constructing houses and plank-boats. Elsewhere in Taiwan, ‘breadfruit’ is also a common ornamental tree. As an essential component of traditional Yami culture, Cipoho has long been assumed to have been transported from the Batanes Island of the Philippines to Lanyu. As such, it represents a commensal species that potentially can be used to test the hypothesis of the northward Austronesian migration ‘into’ Taiwan. However, recent phylogenomic studies using target enrichment show that Taiwanese ‘breadfruit’ might not be the same as the Pacific breadfruit (Artocarpus altilis), which was domesticated in Oceania and widely cultivated throughout the tropics. To resolve persistent misidentification of this culturally and economically important tree species of Taiwan, we sampled 36 trees of Taiwanese Artocarpus and used the Moraceae probe set to enrich 529 nuclear genes. Along with 28 archived Artocarpus sequence datasets (representing a dozen taxa from all subgenera), phylogenomic analyses showed that all Taiwanese ‘breadfruit’ samples, together with a cultivated ornamental tree from Hawaii, form a fully supported clade within the A. treculianus complex, which is composed only of endemic Philippine species. Morphologically, the Taiwanese ‘breadfruit’ matches the characters of A. treculianus. Within the Taiwanese samples of A. treculianus, Amis samples form a fully supported clade derived from within the paraphyletic grade composed of Yami samples, suggesting a Lanyu origin. Results of our target enrichment phylogenomics are consistent with the scenario that Cipoho was transported northward from the Philippines to Lanyu by Yami ancestors, though the possibility that A. treculianus is native to Lanyu cannot be ruled out completely.
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Kyritsis T, Matthews LJ, Welch D, Atkinson QD. Shared cultural ancestry predicts the global diffusion of democracy. EVOLUTIONARY HUMAN SCIENCES 2022; 4:e42. [PMID: 37588939 PMCID: PMC10426017 DOI: 10.1017/ehs.2022.40] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2021] [Revised: 07/07/2022] [Accepted: 08/17/2022] [Indexed: 11/07/2022] Open
Abstract
Understanding global variation in democratic outcomes is critical to efforts to promote and sustain democracy today. Here, we use data on the democratic status of 221 modern and historical nations stretching back up to 200 years to show that, particularly over the last 50 years, nations with shared linguistic and, more recently, religious ancestry have more similar democratic outcomes. We also find evidence that for most of the last 50 years the democratic trajectory of a nation can be predicted by the democratic status of its linguistic and, less clearly, religious relatives, years and even decades earlier. These results are broadly consistent across three democracy indicators (Polity 5, Vanhanen's Index of Democracy, and Freedom in the World) and are not explained by geographical proximity or current shared language or religion. Our findings suggest that deep cultural ancestry remains an important force shaping the fortunes of modern nations, at least in part because democratic norms, institutions, and the factors that support them are more likely to diffuse between close cultural relatives.
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Affiliation(s)
| | - Luke J. Matthews
- RAND Corporation, Boston, Massachusetts, USA
- Faculty, Pardee RAND Graduate School, Santa Monica, California, USA
| | - David Welch
- Centre for Computational Evolution, University of Auckland, New Zealand
- School of Computer Science, University of Auckland, Auckland, New Zealand
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Phylogeographic analysis of the Bantu language expansion supports a rainforest route. Proc Natl Acad Sci U S A 2022; 119:e2112853119. [PMID: 35914165 PMCID: PMC9372543 DOI: 10.1073/pnas.2112853119] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022] Open
Abstract
Southern Africa has been shaped by the large-scale expansion of Bantu populations fueled by agriculture: Currently, 240 million people speak one of the more than 500 Bantu languages. However, the timing and geographic routes undergone by the Bantu populations remain largely unknown. We use cutting-edge phylogeographic techniques to show that Bantu populations migrated through the Central African tropical rainforest around 4,400 y ago. This adds to the growing evidence that agricultural expansions can successfully overcome ecological challenges as they unfold. The Bantu expansion transformed the linguistic, economic, and cultural composition of sub-Saharan Africa. However, the exact dates and routes taken by the ancestors of the speakers of the more than 500 current Bantu languages remain uncertain. Here, we use the recently developed “break-away” geographical diffusion model, specially designed for modeling migrations, with “augmented” geographic information, to reconstruct the Bantu language family expansion. This Bayesian phylogeographic approach with augmented geographical data provides a powerful way of linking linguistic, archaeological, and genetic data to test hypotheses about large language family expansions. We compare four hypotheses: an early major split north of the rainforest; a migration through the Sangha River Interval corridor around 2,500 BP; a coastal migration around 4,000 BP; and a migration through the rainforest before the corridor opening, at 4,000 BP. Our results produce a topology and timeline for the Bantu language family, which supports the hypothesis of an expansion through Central African tropical forests at 4,420 BP (4,040 to 5,000 95% highest posterior density interval), well before the Sangha River Interval was open.
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Deng Z, Kuo SC, Carson MT, Hung HC. Early Austronesians Cultivated Rice and Millet Together: Tracing Taiwan's First Neolithic Crops. FRONTIERS IN PLANT SCIENCE 2022; 13:962073. [PMID: 35937368 PMCID: PMC9355678 DOI: 10.3389/fpls.2022.962073] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/05/2022] [Accepted: 06/20/2022] [Indexed: 05/29/2023]
Abstract
This study presents the first directly dated physical evidence of crop remains from the Early Neolithic archaeological layers in Taiwan. Systematic sampling and analysis of macro-plant remains suggested that Neolithic farmers at the Zhiwuyuan (Botanical Garden) site in Taipei, northern Taiwan, had cultivated rice and foxtail millet together at least 4,500 years ago. A more comprehensive review of all related radiocarbon dates suggests that agriculture emerged in Taiwan around 4,800-4,600 cal. BP, instead of the previous claim of 5,000 cal. BP. According to the rice grain metrics from three study sites of Zhiwuyuan, Dalongdong, and Anhe, the rice cultivated in northern and western-central Taiwan was mainly a short-grained type of the japonica subspecies, similar to the discoveries from the southeast coast of mainland China and the middle Yangtze valley. These new findings support the hypothesis that the southeast coast of mainland China was the origin of proto-Austronesian people who brought their crops and other cultural traditions across the Taiwan Strait 4,800 years ago and eventually farther into Island Southeast Asia.
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Affiliation(s)
- Zhenhua Deng
- Center for the Study of Chinese Archaeology, Peking University, Beijing, China
- School of Archaeology and Museology, Peking University, Beijing, China
| | - Su-chiu Kuo
- Institute of History and Philology, Academia Sinica, Taipei, Taiwan
| | | | - Hsiao-chun Hung
- Department of Archaeology and Natural History, The Australian National University, Canberra, ACT, Australia
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Liu YC, Hunter-Anderson R, Cheronet O, Eakin J, Camacho F, Pietrusewsky M, Rohland N, Ioannidis A, Athens JS, Douglas MT, Ikehara-Quebral RM, Bernardos R, Culleton BJ, Mah M, Adamski N, Broomandkhoshbacht N, Callan K, Lawson AM, Mandl K, Michel M, Oppenheimer J, Stewardson K, Zalzala F, Kidd K, Kidd J, Schurr TG, Auckland K, Hill AVS, Mentzer AJ, Quinto-Cortés CD, Robson K, Kennett DJ, Patterson N, Bustamante CD, Moreno-Estrada A, Spriggs M, Vilar M, Lipson M, Pinhasi R, Reich D. Ancient DNA reveals five streams of migration into Micronesia and matrilocality in early Pacific seafarers. Science 2022; 377:72-79. [PMID: 35771911 PMCID: PMC9983687 DOI: 10.1126/science.abm6536] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
Abstract
Micronesia began to be peopled earlier than other parts of Remote Oceania, but the origins of its inhabitants remain unclear. We generated genome-wide data from 164 ancient and 112 modern individuals. Analysis reveals five migratory streams into Micronesia. Three are East Asian related, one is Polynesian, and a fifth is a Papuan source related to mainland New Guineans that is different from the New Britain-related Papuan source for southwest Pacific populations but is similarly derived from male migrants ~2500 to 2000 years ago. People of the Mariana Archipelago may derive all of their precolonial ancestry from East Asian sources, making them the only Remote Oceanians without Papuan ancestry. Female-inherited mitochondrial DNA was highly differentiated across early Remote Oceanian communities but homogeneous within, implying matrilocal practices whereby women almost never raised their children in communities different from the ones in which they grew up.
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Affiliation(s)
- Yue-Chen Liu
- Department of Genetics, Harvard Medical School, Boston, MA 02115, USA,Department of Human Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA
| | | | - Olivia Cheronet
- Department of Evolutionary Anthropology, University of Vienna, Vienna 1030, Austria
| | - Joanne Eakin
- Independent Researcher, Albuquerque, NM 87107, USA
| | - Frank Camacho
- Department of Biology, University of Guam, Mangilao 96923, Guam
| | - Michael Pietrusewsky
- Department of Anthropology, University of Hawaiʻi at Mānoa, Honolulu, HI 96822, USA
| | - Nadin Rohland
- Department of Genetics, Harvard Medical School, Boston, MA 02115, USA,Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA
| | - Alexander Ioannidis
- Institute for Computational and Mathematical Engineering, Stanford University, Stanford, CA 94305, USA.,Department of Biomedical Data Science, Stanford University, Stanford, CA 94305, USA
| | - J. Stephen Athens
- International Archaeological Research Institute, Inc., Honolulu, HI 96826, USA
| | | | | | - Rebecca Bernardos
- Department of Genetics, Harvard Medical School, Boston, MA 02115, USA
| | - Brendan J. Culleton
- Institutes of Energy and the Environment, The Pennsylvania State University, University Park, PA 16802, USA
| | - Matthew Mah
- Department of Genetics, Harvard Medical School, Boston, MA 02115, USA,Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA,Howard Hughes Medical Institute, Harvard Medical School, Boston, MA 02115, USA
| | - Nicole Adamski
- Department of Genetics, Harvard Medical School, Boston, MA 02115, USA,Howard Hughes Medical Institute, Harvard Medical School, Boston, MA 02115, USA
| | - Nasreen Broomandkhoshbacht
- Department of Genetics, Harvard Medical School, Boston, MA 02115, USA,Howard Hughes Medical Institute, Harvard Medical School, Boston, MA 02115, USA
| | - Kimberly Callan
- Department of Genetics, Harvard Medical School, Boston, MA 02115, USA,Howard Hughes Medical Institute, Harvard Medical School, Boston, MA 02115, USA
| | - Ann Marie Lawson
- Department of Genetics, Harvard Medical School, Boston, MA 02115, USA,Howard Hughes Medical Institute, Harvard Medical School, Boston, MA 02115, USA
| | - Kirsten Mandl
- Department of Evolutionary Anthropology, University of Vienna, Vienna 1030, Austria
| | - Megan Michel
- Department of Genetics, Harvard Medical School, Boston, MA 02115, USA,Howard Hughes Medical Institute, Harvard Medical School, Boston, MA 02115, USA
| | - Jonas Oppenheimer
- Department of Genetics, Harvard Medical School, Boston, MA 02115, USA,Howard Hughes Medical Institute, Harvard Medical School, Boston, MA 02115, USA
| | - Kristin Stewardson
- Department of Genetics, Harvard Medical School, Boston, MA 02115, USA,Howard Hughes Medical Institute, Harvard Medical School, Boston, MA 02115, USA
| | - Fatma Zalzala
- Department of Genetics, Harvard Medical School, Boston, MA 02115, USA,Howard Hughes Medical Institute, Harvard Medical School, Boston, MA 02115, USA
| | - Kenneth Kidd
- Department of Genetics, Yale Medical School, New Haven, CT 06520, USA
| | - Judith Kidd
- Department of Genetics, Yale Medical School, New Haven, CT 06520, USA
| | - Theodore G. Schurr
- Department of Anthropology, University of Pennsylvania, Philadelphia, PA 19104, USA
| | - Kathryn Auckland
- Wellcome Centre for Human Genetics, University of Oxford, Oxford OX3 7BN, UK
| | - Adrian V. S. Hill
- Wellcome Centre for Human Genetics, University of Oxford, Oxford OX3 7BN, UK,The Jenner Institute, Nuffield Department of Medicine, University of Oxford, Oxford OX3 7DQ, UK
| | - Alexander J. Mentzer
- Wellcome Centre for Human Genetics, University of Oxford, Oxford OX3 7BN, UK,Big Data Institute, Li Ka Shing Centre for Health Information and Discovery, University of Oxford, Oxford OX3 7LF, UK
| | - Consuelo D. Quinto-Cortés
- National Laboratory of Genomics for Biodiversity (LANGEBIO), Unit of Advanced Genomics, CINVESTAV, Irapuato 36821, Mexico
| | - Kathryn Robson
- MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford OX3 9DS, UK
| | - Douglas J. Kennett
- Department of Anthropology, University of California, Santa Barbara, CA 93106, USA
| | - Nick Patterson
- Department of Human Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA,Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA
| | - Carlos D. Bustamante
- Department of Biomedical Data Science, Stanford University, Stanford, CA 94305, USA.,Center for Computational, Evolutionary and Human Genomics (CEHG), Stanford University, Stanford, CA 94305, USA,Current Address: Galatea Bio, Inc. 975 W 22nd St. Hialeah, FL 33010, USA
| | - Andrés Moreno-Estrada
- National Laboratory of Genomics for Biodiversity (LANGEBIO), Unit of Advanced Genomics, CINVESTAV, Irapuato 36821, Mexico
| | - Matthew Spriggs
- School of Archaeology and Anthropology, The Australian National University, Canberra, ACT 2601, Australia,Vanuatu National Museum, Vanuatu Culture Centre, P.O. Box 184, Port Vila, Vanuatu
| | - Miguel Vilar
- Department of Anthropology, University of Maryland, College Park, MD 20742, USA
| | - Mark Lipson
- Department of Genetics, Harvard Medical School, Boston, MA 02115, USA,Department of Human Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA
| | - Ron Pinhasi
- Department of Evolutionary Anthropology, University of Vienna, Vienna 1030, Austria,Human Evolution and Archaeological Sciences, University of Vienna, Vienna 1030, Austria
| | - David Reich
- Department of Genetics, Harvard Medical School, Boston, MA 02115, USA,Department of Human Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA,Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA,Howard Hughes Medical Institute, Harvard Medical School, Boston, MA 02115, USA
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Abstract
The past decades have seen substantial growth in digital data on the world’s languages. At the same time, the demand for cross-linguistic datasets has been increasing, as witnessed by numerous studies devoted to diverse questions on human prehistory, cultural evolution, and human cognition. Unfortunately, most published datasets lack standardization which makes their comparison difficult. Here, we present a new approach to increase the comparability of cross-linguistic lexical data. We have designed workflows for the computer-assisted lifting of datasets to Cross-Linguistic Data Formats, a collection of standards that make these datasets more Findable, Accessible, Interoperable, and Reusable (FAIR). We test the Lexibank workflow on 100 lexical datasets from which we derive an aggregated database of wordlists in unified phonetic transcriptions covering more than 2000 language varieties. We illustrate the benefits of our approach by showing how phonological and lexical features can be automatically inferred, complementing and expanding existing cross-linguistic datasets. Measurement(s) | expressions | Technology Type(s) | data aggregation | Factor Type(s) | none | Sample Characteristic - Organism | human language | Sample Characteristic - Location | global scale |
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Hahn M, Xu Y. Crosslinguistic word order variation reflects evolutionary pressures of dependency and information locality. Proc Natl Acad Sci U S A 2022; 119:e2122604119. [PMID: 35675428 PMCID: PMC9214541 DOI: 10.1073/pnas.2122604119] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2022] [Accepted: 04/19/2022] [Indexed: 11/18/2022] Open
Abstract
Languages vary considerably in syntactic structure. About 40% of the world's languages have subject-verb-object order, and about 40% have subject-object-verb order. Extensive work has sought to explain this word order variation across languages. However, the existing approaches are not able to explain coherently the frequency distribution and evolution of word order in individual languages. We propose that variation in word order reflects different ways of balancing competing pressures of dependency locality and information locality, whereby languages favor placing elements together when they are syntactically related or contextually informative about each other. Using data from 80 languages in 17 language families and phylogenetic modeling, we demonstrate that languages evolve to balance these pressures, such that word order change is accompanied by change in the frequency distribution of the syntactic structures that speakers communicate to maintain overall efficiency. Variability in word order thus reflects different ways in which languages resolve these evolutionary pressures. We identify relevant characteristics that result from this joint optimization, particularly the frequency with which subjects and objects are expressed together for the same verb. Our findings suggest that syntactic structure and usage across languages coadapt to support efficient communication under limited cognitive resources.
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Affiliation(s)
- Michael Hahn
- Department of Linguistics, Stanford University, Stanford, CA 94305
- Collaborative Research Center 1102, Saarland University, 66041 Saarbrücken, Germany
| | - Yang Xu
- Department of Computer Science, Cognitive Science Program, University of Toronto, Toronto, ON M5S 3G8, Canada
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38
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Ancient genomes from the last three millennia support multiple human dispersals into Wallacea. Nat Ecol Evol 2022; 6:1024-1034. [PMID: 35681000 PMCID: PMC9262713 DOI: 10.1038/s41559-022-01775-2] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2021] [Accepted: 04/13/2022] [Indexed: 12/27/2022]
Abstract
Previous research indicates that human genetic diversity in Wallacea-islands in present-day Eastern Indonesia and Timor-Leste that were never part of the Sunda or Sahul continental shelves-has been shaped by complex interactions between migrating Austronesian farmers and indigenous hunter-gatherer communities. Yet, inferences based on present-day groups proved insufficient to disentangle this region's demographic movements and admixture timings. Here, we investigate the spatio-temporal patterns of variation in Wallacea based on genome-wide data from 16 ancient individuals (2600-250 years BP) from the North Moluccas, Sulawesi and East Nusa Tenggara. While ancestry in the northern islands primarily reflects contact between Austronesian- and Papuan-related groups, ancestry in the southern islands reveals additional contributions from Mainland Southeast Asia that seem to predate the arrival of Austronesians. Admixture time estimates further support multiple and/or continuous admixture involving Papuan- and Asian-related groups throughout Wallacea. Our results clarify previously debated times of admixture and suggest that the Neolithic dispersals into Island Southeast Asia are associated with the spread of multiple genetic ancestries.
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39
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Koile E, Chechuro I, Moroz G, Daniel M. Geography and language divergence: The case of Andic languages. PLoS One 2022; 17:e0265460. [PMID: 35617249 PMCID: PMC9135239 DOI: 10.1371/journal.pone.0265460] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2021] [Accepted: 03/02/2022] [Indexed: 11/19/2022] Open
Abstract
We study the correlation between phylogenetic and geographic distances for the languages of the Andic branch of the East Caucasian (Nakh-Daghestanian) language family. For several alternative phylogenies, we find that geographic distances correlate with linguistic divergence. Notably, qualitative classifications show a better fit with geography than cognacy-based phylogenies. We interpret this result as follows: The better fit may be due to implicit geographic bias in qualitative classifications. We conclude that approaches to classification other than those based on cognacy run a risk to implicitly include geography and geography-related factors as one basis of genealogical classifications.
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Affiliation(s)
- Ezequiel Koile
- Linguistic Convergence Laboratory, HSE University, Moscow, Russia
- Department of Linguistic and Cultural Evolution, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
| | - Ilia Chechuro
- Department of Linguistic and Cultural Evolution, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
| | - George Moroz
- Linguistic Convergence Laboratory, HSE University, Moscow, Russia
| | - Michael Daniel
- Linguistic Convergence Laboratory, HSE University, Moscow, Russia
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40
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Šaffa G, Zrzavý J, Duda P. Global phylogenetic analysis reveals multiple origins and correlates of genital mutilation/cutting. Nat Hum Behav 2022; 6:635-645. [PMID: 35361908 DOI: 10.1038/s41562-022-01321-x] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2021] [Accepted: 02/18/2022] [Indexed: 12/26/2022]
Abstract
Genital mutilation/cutting is costly in terms of health, survival and reproduction, and the long-term maintenance of these practices is an evolutionary conundrum. Previous studies have suggested a mate-guarding function or various signalling functions of genital mutilation/cutting. Here we use phylogenetic comparative methods and two global ethnographic samples to study the origins and socio-ecological correlates of major types of female and male genital mutilation/cutting. Male genital mutilation/cutting probably originated in polygynous societies with separate residence of co-wives, supporting a mate-guarding function. Female genital mutilation/cutting originated subsequently and almost exclusively in societies already practising male genital mutilation/cutting, where it may have become a signal of chastity. Both have originated multiple times, some as early as in the mid-Holocene (5,000-7,000 years ago), considerably predating the earliest archaeological evidence and written records. Genital mutilation/cutting co-evolves with and may help maintain fundamental social structures, hindering efforts to change these cultural practices.
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Affiliation(s)
- Gabriel Šaffa
- Department of Zoology, Faculty of Science, University of South Bohemia, České Budějovice, Czechia
| | - Jan Zrzavý
- Department of Zoology, Faculty of Science, University of South Bohemia, České Budějovice, Czechia
| | - Pavel Duda
- Department of Zoology, Faculty of Science, University of South Bohemia, České Budějovice, Czechia.
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Hübler N. Phylogenetic signal and rate of evolutionary change in language structures. ROYAL SOCIETY OPEN SCIENCE 2022; 9:211252. [PMID: 35360346 PMCID: PMC8965403 DOI: 10.1098/rsos.211252] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/30/2021] [Accepted: 02/28/2022] [Indexed: 05/12/2023]
Abstract
Within linguistics, there is an ongoing debate about whether some language structures remain stable over time, which structures these are and whether they can be used to uncover the relationships between languages. However, there is no consensus on the definition of the term 'stability'. I define 'stability' as a high phylogenetic signal and a low rate of change. I use metric D to measure the phylogenetic signal and Hidden Markov Model to calculate the evolutionary rate for 171 structural features coded for 12 Japonic, 2 Koreanic, 14 Mongolic, 11 Tungusic and 21 Turkic languages. To more deeply investigate the differences in evolutionary dynamics of structural features across areas of grammar, I divide the features into 4 language domains, 13 functional categories and 9 parts of speech. My results suggest that there is a correlation between the phylogenetic signal and evolutionary rate and that, overall, two-thirds of the features have a high phylogenetic signal and over a half of the features evolve at a slow rate. Specifically, argument marking (flagging and indexing), derivation and valency appear to be the most stable functional categories, pronouns and nouns the most stable parts of speech, and phonological and morphological levels the most stable language domains.
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Affiliation(s)
- Nataliia Hübler
- Department of Linguistic and Cultural Evolution, Max Planck Institute for the Science of Human History, Kahlaische Str. 10, Jena 07745, Germany
- Department of Linguistic and Cultural Evolution, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, Leipzig 04103
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Changmai P, Jaisamut K, Kampuansai J, Kutanan W, Altınışık NE, Flegontova O, Inta A, Yüncü E, Boonthai W, Pamjav H, Reich D, Flegontov P. Indian genetic heritage in Southeast Asian populations. PLoS Genet 2022; 18:e1010036. [PMID: 35176016 PMCID: PMC8853555 DOI: 10.1371/journal.pgen.1010036] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2021] [Accepted: 01/12/2022] [Indexed: 11/20/2022] Open
Abstract
The great ethnolinguistic diversity found today in mainland Southeast Asia (MSEA) reflects multiple migration waves of people in the past. Maritime trading between MSEA and India was established at the latest 300 BCE, and the formation of early states in Southeast Asia during the first millennium CE was strongly influenced by Indian culture, a cultural influence that is still prominent today. Several ancient Indian-influenced states were located in present-day Thailand, and various populations in the country are likely to be descendants of people from those states. To systematically explore Indian genetic heritage in MSEA populations, we generated genome-wide SNP data (using the Affymetrix Human Origins array) for 119 present-day individuals belonging to 10 ethnic groups from Thailand and co-analyzed them with published data using PCA, ADMIXTURE, and methods relying on f-statistics and on autosomal haplotypes. We found low levels of South Asian admixture in various MSEA populations for whom there is evidence of historical connections with the ancient Indian-influenced states but failed to find this genetic component in present-day hunter-gatherer groups and relatively isolated groups from the highlands of Northern Thailand. The results suggest that migration of Indian populations to MSEA may have been responsible for the spread of Indian culture in the region. Our results also support close genetic affinity between Kra-Dai-speaking (also known as Tai-Kadai) and Austronesian-speaking populations, which fits a linguistic hypothesis suggesting cladality of the two language families.
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Affiliation(s)
- Piya Changmai
- Department of Biology and Ecology, Faculty of Science, University of Ostrava, Ostrava, Czech Republic
| | - Kitipong Jaisamut
- Department of Biology and Ecology, Faculty of Science, University of Ostrava, Ostrava, Czech Republic
| | - Jatupol Kampuansai
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai, Thailand
- Research Center in Bioresources for Agriculture, Industry and Medicine, Chiang Mai University, Chiang Mai, Thailand
| | - Wibhu Kutanan
- Department of Biology, Faculty of Science, Khon Kaen University, Khon Kaen, Thailand
| | - N Ezgi Altınışık
- Department of Biology and Ecology, Faculty of Science, University of Ostrava, Ostrava, Czech Republic
| | - Olga Flegontova
- Department of Biology and Ecology, Faculty of Science, University of Ostrava, Ostrava, Czech Republic
| | - Angkhana Inta
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai, Thailand
- Research Center in Bioresources for Agriculture, Industry and Medicine, Chiang Mai University, Chiang Mai, Thailand
| | - Eren Yüncü
- Department of Biology and Ecology, Faculty of Science, University of Ostrava, Ostrava, Czech Republic
| | - Worrawit Boonthai
- Research Unit in Physical Anthropology and Health Science, Thammasat University, Pathum thani, Thailand
| | - Horolma Pamjav
- Hungarian Institute for Forensic Sciences, Institute of Forensic Genetics, Budapest, Hungary
| | - David Reich
- Department of Human Evolutionary Biology, Harvard University, Cambridge, Massachusetts, United States of America
- Department of Genetics, Harvard Medical School, Boston, Massachusetts, United States of America
- Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America
- Howard Hughes Medical Institute, Harvard Medical School, Boston, Massachusetts, United States of America
| | - Pavel Flegontov
- Department of Biology and Ecology, Faculty of Science, University of Ostrava, Ostrava, Czech Republic
- Department of Human Evolutionary Biology, Harvard University, Cambridge, Massachusetts, United States of America
- Kalmyk Research Center of the Russian Academy of Sciences, Elista, Kalmykia, Russia
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Leisterer-Peoples SM, Ross CT, Greenhill SJ, Hardecker S, Haun DBM. Games and enculturation: A cross-cultural analysis of cooperative goal structures in Austronesian games. PLoS One 2021; 16:e0259746. [PMID: 34818365 PMCID: PMC8612520 DOI: 10.1371/journal.pone.0259746] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2021] [Accepted: 10/25/2021] [Indexed: 11/19/2022] Open
Abstract
While most animals play, only humans play games. As animal play serves to teach offspring important life-skills in a safe scenario, human games might, in similar ways, teach important culturally relevant skills. Humans in all cultures play games; however, it is not clear whether variation in the characteristics of games across cultural groups is related to group-level attributes. Here we investigate specifically whether the cooperativeness of games covaries with socio-ecological differences across cultural groups. We hypothesize that cultural groups that engage in frequent inter-group conflict, cooperative sustenance acquisition, or that have less stratified social structures, might more frequently play cooperative games as compared to groups that do not share these characteristics. To test these hypotheses, we gathered data from the ethnographic record on 25 ethnolinguistic groups in the Austronesian language family. We show that cultural groups with higher levels of inter-group conflict and cooperative land-based hunting play cooperative games more frequently than other groups. Additionally, cultural groups with higher levels of intra-group conflict play competitive games more frequently than other groups. These findings indicate that games are not randomly distributed among cultures, but rather relate to the socio-ecological settings of the cultural groups that practice them. We argue that games serve as training grounds for group-specific norms and values and thereby have an important function in enculturation during childhood. Moreover, games might server an important role in the maintenance of cultural diversity.
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Affiliation(s)
- Sarah M. Leisterer-Peoples
- Department of Comparative Cultural Psychology, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
- Leipzig Research Center for Early Child Development, Universität Leipzig, Leipzig, Germany
| | - Cody T. Ross
- Department of Human Behavior, Ecology and Culture, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
| | - Simon J. Greenhill
- Department of Linguistic and Cultural Evolution, Max Planck Institute for the Science of Human History, Jena, Germany
- ARC Center of Excellence for the Dynamics of Language, ANU College of Asia and the Pacific, Australian National University, Canberra, Australia
| | | | - Daniel B. M. Haun
- Department of Comparative Cultural Psychology, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
- Leipzig Research Center for Early Child Development, Universität Leipzig, Leipzig, Germany
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Youngblood M, Baraghith K, Savage PE. Phylogenetic reconstruction of the cultural evolution of electronic music via dynamic community detection (1975–1999). EVOL HUM BEHAV 2021. [DOI: 10.1016/j.evolhumbehav.2021.06.002] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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45
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Greenhill SJ. Do languages and genes share cultural evolutionary history? SCIENCE ADVANCES 2021; 7:eabm2472. [PMID: 34613765 PMCID: PMC11323785 DOI: 10.1126/sciadv.abm2472] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/03/2021] [Accepted: 09/17/2021] [Indexed: 06/13/2023]
Abstract
Languages and genes tell stories about the past but statistical analysis reveals that these are not always the same.
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Affiliation(s)
- Simon J Greenhill
- Department of Linguistic and Cultural Evolution, Max Planck Institute for the Science of Human History, Jena 07745, Germany.
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46
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Jackson JC, Watts J, List JM, Puryear C, Drabble R, Lindquist KA. From Text to Thought: How Analyzing Language Can Advance Psychological Science. PERSPECTIVES ON PSYCHOLOGICAL SCIENCE 2021; 17:805-826. [PMID: 34606730 PMCID: PMC9069665 DOI: 10.1177/17456916211004899] [Citation(s) in RCA: 29] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Humans have been using language for millennia but have only just begun to scratch the surface of what natural language can reveal about the mind. Here we propose that language offers a unique window into psychology. After briefly summarizing the legacy of language analyses in psychological science, we show how methodological advances have made these analyses more feasible and insightful than ever before. In particular, we describe how two forms of language analysis—natural-language processing and comparative linguistics—are contributing to how we understand topics as diverse as emotion, creativity, and religion and overcoming obstacles related to statistical power and culturally diverse samples. We summarize resources for learning both of these methods and highlight the best way to combine language analysis with more traditional psychological paradigms. Applying language analysis to large-scale and cross-cultural datasets promises to provide major breakthroughs in psychological science.
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Affiliation(s)
- Joshua Conrad Jackson
- Department of Psychology and Neuroscience, University of North Carolina at Chapel Hill
| | - Joseph Watts
- Department of Linguistic and Cultural Evolution, Max Planck Institute for the Science of Human History.,Center for Research on Evolution, Belief, and Behaviour, University of Otago.,Religion Programme, University of Otago
| | - Johann-Mattis List
- Department of Linguistic and Cultural Evolution, Max Planck Institute for the Science of Human History
| | - Curtis Puryear
- Department of Psychology and Neuroscience, University of North Carolina at Chapel Hill
| | - Ryan Drabble
- Department of Psychology and Neuroscience, University of North Carolina at Chapel Hill
| | - Kristen A Lindquist
- Department of Psychology and Neuroscience, University of North Carolina at Chapel Hill
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47
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Ioannidis AG, Blanco-Portillo J, Sandoval K, Hagelberg E, Barberena-Jonas C, Hill AVS, Rodríguez-Rodríguez JE, Fox K, Robson K, Haoa-Cardinali S, Quinto-Cortés CD, Miquel-Poblete JF, Auckland K, Parks T, Sofro ASM, Ávila-Arcos MC, Sockell A, Homburger JR, Eng C, Huntsman S, Burchard EG, Gignoux CR, Verdugo RA, Moraga M, Bustamante CD, Mentzer AJ, Moreno-Estrada A. Paths and timings of the peopling of Polynesia inferred from genomic networks. Nature 2021; 597:522-526. [PMID: 34552258 PMCID: PMC9710236 DOI: 10.1038/s41586-021-03902-8] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2020] [Accepted: 08/12/2021] [Indexed: 02/08/2023]
Abstract
Polynesia was settled in a series of extraordinary voyages across an ocean spanning one third of the Earth1, but the sequences of islands settled remain unknown and their timings disputed. Currently, several centuries separate the dates suggested by different archaeological surveys2-4. Here, using genome-wide data from merely 430 modern individuals from 21 key Pacific island populations and novel ancestry-specific computational analyses, we unravel the detailed genetic history of this vast, dispersed island network. Our reconstruction of the branching Polynesian migration sequence reveals a serial founder expansion, characterized by directional loss of variants, that originated in Samoa and spread first through the Cook Islands (Rarotonga), then to the Society (Tōtaiete mā) Islands (11th century), the western Austral (Tuha'a Pae) Islands and Tuāmotu Archipelago (12th century), and finally to the widely separated, but genetically connected, megalithic statue-building cultures of the Marquesas (Te Henua 'Enana) Islands in the north, Raivavae in the south, and Easter Island (Rapa Nui), the easternmost of the Polynesian islands, settled in approximately AD 1200 via Mangareva.
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Affiliation(s)
- Alexander G Ioannidis
- Institute for Computational and Mathematical Engineering, Stanford University, Stanford, CA, USA.
- National Laboratory of Genomics for Biodiversity (LANGEBIO)-Advanced Genomics Unit (UGA), CINVESTAV, Irapuato, Guanajuato, Mexico.
| | - Javier Blanco-Portillo
- National Laboratory of Genomics for Biodiversity (LANGEBIO)-Advanced Genomics Unit (UGA), CINVESTAV, Irapuato, Guanajuato, Mexico
| | - Karla Sandoval
- National Laboratory of Genomics for Biodiversity (LANGEBIO)-Advanced Genomics Unit (UGA), CINVESTAV, Irapuato, Guanajuato, Mexico
| | | | - Carmina Barberena-Jonas
- National Laboratory of Genomics for Biodiversity (LANGEBIO)-Advanced Genomics Unit (UGA), CINVESTAV, Irapuato, Guanajuato, Mexico
| | - Adrian V S Hill
- Wellcome Centre for Human Genetics, University of Oxford, Roosevelt Drive, Oxford, UK
- The Jenner Institute, Nuffield Department of Medicine, University of Oxford, Oxford, UK
| | - Juan Esteban Rodríguez-Rodríguez
- National Laboratory of Genomics for Biodiversity (LANGEBIO)-Advanced Genomics Unit (UGA), CINVESTAV, Irapuato, Guanajuato, Mexico
| | - Keolu Fox
- Department of Anthropology, University of California San Diego, La Jolla, CA, USA
| | - Kathryn Robson
- MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK
| | | | - Consuelo D Quinto-Cortés
- National Laboratory of Genomics for Biodiversity (LANGEBIO)-Advanced Genomics Unit (UGA), CINVESTAV, Irapuato, Guanajuato, Mexico
| | | | - Kathryn Auckland
- Wellcome Centre for Human Genetics, University of Oxford, Roosevelt Drive, Oxford, UK
| | - Tom Parks
- Wellcome Centre for Human Genetics, University of Oxford, Roosevelt Drive, Oxford, UK
| | - Abdul Salam M Sofro
- Department of Biochemistry, Faculty of Medicine, Yayasan Rumah Sakit Islam (YARSI) University, Cempaka Putih, Jakarta, Indonesia
| | - María C Ávila-Arcos
- International Laboratory for Human Genome Research (LIIGH), UNAM Juriquilla, Queretaro, Mexico
| | - Alexandra Sockell
- Center for Computational, Evolutionary and Human Genomics (CEHG), Stanford University, Stanford, CA, USA
| | - Julian R Homburger
- Center for Computational, Evolutionary and Human Genomics (CEHG), Stanford University, Stanford, CA, USA
| | - Celeste Eng
- Program in Pharmaceutical Sciences and Pharmacogenomics, Department of Medicine, University of California San Francisco, San Francisco, CA, USA
| | - Scott Huntsman
- Program in Pharmaceutical Sciences and Pharmacogenomics, Department of Medicine, University of California San Francisco, San Francisco, CA, USA
| | - Esteban G Burchard
- Program in Pharmaceutical Sciences and Pharmacogenomics, Department of Medicine, University of California San Francisco, San Francisco, CA, USA
| | - Christopher R Gignoux
- Division of Biomedical Informatics and Personalized Medicine, University of Colorado, Denver, CO, USA
| | - Ricardo A Verdugo
- Human Genetics Program, Institute of Biomedical Sciences, Faculty of Medicine, University of Chile, Santiago, Chile
- Translational Oncology Department, Faculty of Medicine, University of Chile, Santiago, Chile
| | - Mauricio Moraga
- Human Genetics Program, Institute of Biomedical Sciences, Faculty of Medicine, University of Chile, Santiago, Chile
- Department of Anthropology, Faculty of Social Sciences, University of Chile, Santiago, Chile
| | - Carlos D Bustamante
- Center for Computational, Evolutionary and Human Genomics (CEHG), Stanford University, Stanford, CA, USA
- Department of Biomedical Data Science, Stanford University, Stanford, CA, USA
| | - Alexander J Mentzer
- Wellcome Centre for Human Genetics, University of Oxford, Roosevelt Drive, Oxford, UK
- Big Data Institute, Li Ka Shing Centre for Health Information and Discovery, University of Oxford, Oxford, UK
| | - Andrés Moreno-Estrada
- National Laboratory of Genomics for Biodiversity (LANGEBIO)-Advanced Genomics Unit (UGA), CINVESTAV, Irapuato, Guanajuato, Mexico.
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48
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What Do We Talk About When We Talk About Culture? There is a Missing Link Between the Natural and the Social Sciences. Integr Psychol Behav Sci 2021; 55:850-857. [PMID: 34453266 DOI: 10.1007/s12124-021-09644-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/22/2021] [Indexed: 10/20/2022]
Abstract
The article by Wells is a chance to ponder on the different conceptions of culture endorsed by the natural sciences and by the social sciences. The standard definition of culture among biologists/natural scientists usually focuses on transmission of behaviors (e.g. "tradition of socially learned behaviors"), while on the other hand anthropologists and social scientists focus more on the symbolic aspect of culture (e.g."webs of significance"). This differential emphasis likely reflects a difference in ontology (what culture is) and in its epistemology (how it can be studied). Natural scientists typically prefer to focus on how cultural traits change quantitatively, while social scientists are much more focused with the process of symbolic interpretation, which typically involves the ability to account for meaning and sense-making (thus, it is more qualitative-grounded). These two conceptions of culture are both valid but incomplete, if they do not take into account the counterpart. The scientific conundrum that has to be solved is how these two different onto-epistemologies can be successfully linked together. A speculative hypothesis is put forward.
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49
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Chopoorian A, Pichkar Y, Creanza N. The Role of the Learner in the Cultural Evolution of Vocalizations. Front Psychol 2021; 12:667455. [PMID: 34484031 PMCID: PMC8415155 DOI: 10.3389/fpsyg.2021.667455] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2021] [Accepted: 07/12/2021] [Indexed: 11/13/2022] Open
Abstract
As a uniquely human behavior, language is crucial to our understanding of ourselves and of the world around us. Despite centuries of research into how languages have historically developed and how people learn them, fully understanding the origin and evolution of language remains an ongoing challenge. In parallel, researchers have studied the divergence of birdsong in vocal-learning songbirds to uncover broader patterns of cultural evolution. One approach to studying cultural change over time, adapted from biology, focuses on the transmission of socially learned traits, including language, in a population. By studying how learning and the distribution of cultural traits interact at the population level, we can better understand the processes that underlie cultural evolution. Here, we take a two-fold approach to understanding the cultural evolution of vocalizations, with a focus on the role of the learner in cultural transmission. First, we explore previous research on the evolution of social learning, focusing on recent progress regarding the origin and ongoing cultural evolution of both language and birdsong. We then use a spatially explicit population model to investigate the coevolution of culture and learning preferences, with the assumption that selection acts directly on cultural phenotypes and indirectly on learning preferences. Our results suggest that the spatial distribution of learned behaviors can cause unexpected evolutionary patterns of learning. We find that, intuitively, selection for rare cultural phenotypes can indirectly favor a novelty-biased learning strategy. In contrast, selection for common cultural phenotypes leads to cultural homogeneity; we find that there is no selective pressure on learning strategy without cultural variation. Thus, counterintuitively, selection for common cultural traits does not consistently favor conformity bias, and novelty bias can stably persist in this cultural context. We propose that the evolutionary dynamics of learning preferences and cultural biases can depend on the existing variation of learned behaviors, and that this interaction could be important to understanding the origin and evolution of cultural systems such as language and birdsong. Selection acting on learned behaviors may indirectly impose counterintuitive selective pressures on learning strategies, and understanding the cultural landscape is crucial to understanding how patterns of learning might change over time.
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Affiliation(s)
| | | | - Nicole Creanza
- Department of Biological Sciences, Vanderbilt University, Nashville, TN, United States
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50
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Evans CL, Greenhill SJ, Watts J, List JM, Botero CA, Gray RD, Kirby KR. The uses and abuses of tree thinking in cultural evolution. Philos Trans R Soc Lond B Biol Sci 2021; 376:20200056. [PMID: 33993767 PMCID: PMC8126464 DOI: 10.1098/rstb.2020.0056] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 02/11/2021] [Indexed: 11/13/2022] Open
Abstract
Modern phylogenetic methods are increasingly being used to address questions about macro-level patterns in cultural evolution. These methods can illuminate the unobservable histories of cultural traits and identify the evolutionary drivers of trait change over time, but their application is not without pitfalls. Here, we outline the current scope of research in cultural tree thinking, highlighting a toolkit of best practices to navigate and avoid the pitfalls and 'abuses' associated with their application. We emphasize two principles that support the appropriate application of phylogenetic methodologies in cross-cultural research: researchers should (1) draw on multiple lines of evidence when deciding if and which types of phylogenetic methods and models are suitable for their cross-cultural data, and (2) carefully consider how different cultural traits might have different evolutionary histories across space and time. When used appropriately phylogenetic methods can provide powerful insights into the processes of evolutionary change that have shaped the broad patterns of human history. This article is part of the theme issue 'Foundations of cultural evolution'.
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Affiliation(s)
- Cara L. Evans
- Department of Linguistic and Cultural Evolution, Max Planck Institute for the Science of Human History, Jena 07745, Germany
| | - Simon J. Greenhill
- Department of Linguistic and Cultural Evolution, Max Planck Institute for the Science of Human History, Jena 07745, Germany
- ARC Centre of Excellence for the Dynamics of Language, ANU College of Asia and the Pacific, Australian National University, Canberra 2700, Australia
| | - Joseph Watts
- Religion Programme, University of Otago, Dunedin 9016, New Zealand
- Centre for Research on Evolution, Belief and Behaviour, University of Otago, Dunedin 9016, New Zealand
| | - Johann-Mattis List
- Department of Linguistic and Cultural Evolution, Max Planck Institute for the Science of Human History, Jena 07745, Germany
| | - Carlos A. Botero
- Department of Biology, Washington University in St Louis, St Louis, MO 63130, USA
| | - Russell D. Gray
- Department of Linguistic and Cultural Evolution, Max Planck Institute for the Science of Human History, Jena 07745, Germany
- School of Psychology, University of Auckland, Auckland 1010, New Zealand
| | - Kathryn R. Kirby
- Department of Linguistic and Cultural Evolution, Max Planck Institute for the Science of Human History, Jena 07745, Germany
- Department of Ecology and Evolutionary Biology, University of Toronto, Toronto, ON, Canada M5S 3B2
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