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Kalvaitienė G, Bučas M, Vaičiūtė D, Balčiūnas A, Gyraitė G, Kataržytė M. Impact of beach wrack on microorganisms associated with faecal pollution at the Baltic Sea Sandy beaches. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 918:170442. [PMID: 38278231 DOI: 10.1016/j.scitotenv.2024.170442] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/12/2023] [Revised: 12/21/2023] [Accepted: 01/23/2024] [Indexed: 01/28/2024]
Abstract
We investigated whether higher quantities of faecal indicator bacteria (FIB) are in the areas with red algae-dominated wrack compared to areas without it and if the birds are the primary source of faecal pollution on sandy beaches of the Baltic Sea. Water, sand and wrack samples were collected during the recreational season, and abundances of FIB, HF183 (human faecal pollution) and GFD (bird faecal pollution) markers, as well as the presence of Salmonella and Campylobacter, were assessed. Significantly higher levels of Enterococcus spp. were found in the wrack accumulation areas in water and sand than in the areas without wrack when there was a faecal pollution event, which could be explained by entrapment and changed physico-chemical water conditions. Both faecal pollution markers were identified, however, with no apparent pattern. Campylobacter bacteria were identified in the wrack-affected water, sand, and beach wrack. While this research provides valuable insights into beach wrack serving as a reservoir for FIB, further investigations, including multi-day samplings, are necessary to gain a deeper understanding of the long-term dynamics of microbiota within red algae-dominated wrack.
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Affiliation(s)
- Greta Kalvaitienė
- Klaipėda University, Marine Research Institute, University Avenue 17, 92295 Klaipėda, Lithuania.
| | - Martynas Bučas
- Klaipėda University, Marine Research Institute, University Avenue 17, 92295 Klaipėda, Lithuania.
| | - Diana Vaičiūtė
- Klaipėda University, Marine Research Institute, University Avenue 17, 92295 Klaipėda, Lithuania.
| | - Arūnas Balčiūnas
- Klaipėda University, Marine Research Institute, University Avenue 17, 92295 Klaipėda, Lithuania.
| | - Greta Gyraitė
- Klaipėda University, Marine Research Institute, University Avenue 17, 92295 Klaipėda, Lithuania.
| | - Marija Kataržytė
- Klaipėda University, Marine Research Institute, University Avenue 17, 92295 Klaipėda, Lithuania.
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2
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Ahmed W, Payyappat S, Cassidy M, Harrison N, Besley C. Reduction of human fecal markers and enteric viruses in Sydney estuarine waters receiving wet weather overflows. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 896:165008. [PMID: 37348731 DOI: 10.1016/j.scitotenv.2023.165008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/12/2023] [Revised: 06/16/2023] [Accepted: 06/17/2023] [Indexed: 06/24/2023]
Abstract
The current microbial source tracking (MST) study tracked the reduction of the culturable fecal indicator bacteria enterococci, four human fecal markers (Bacteroides HF183, Lachnospiraceae Lachno3, cross-assembly phage (CrAssphage) and pepper mild mottle virus (PMMoV)) along with four enteric viruses - human adenovirus 40/41 (HAdV 40/41), enterovirus (EV), human norovirus GI (HNoV GI) and GII (HNoV GII) post wet weather overflows (WWOs) at two estuarine water sites from two depths under separate six-day sampling campaigns over seven and 12 days in Sydney, NSW, Australia. Neither HNoV GI nor GII was detected, while 13.9 % (10/72) of estuarine water samples had detections of EV. Quantifiable concentrations (0.64 to 2.00 log10 gene copies (GC)/100 mL) for HAdV 40/41 were returned from 65.2 % (47/72) of samples collected across the two sites and two depths with 30 quantifications recorded in the surface layer samples. In contrast the presence of HF183, Lachno3, CrAssphage, and PMMoV markers was observed in all 36 (100 %) estuarine water samples collected from the surface layer from both sites. Detection frequencies of these markers were slightly lower at 1 m above the bottom surface. The concentrations of the human fecal markers were compared to established gastrointestinal (GI) risk benchmarks. The concentrations of HF183, Lachno3 and CrAssphage marker only exceeded the GI risk benchmark until day 3, while concentrations of PMMoV marker were indicative of exceedance of the GI risk benchmark on day 7 post WWOs that was much longer than indicated by culturable enterococci concentrations that were within this GI risk benchmark by day 2 and day 4 for the two sites, respectively.
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Affiliation(s)
- Warish Ahmed
- CSIRO Environment, Ecosciences Precinct, 41 Boggo Road, Dutton Park, QLD 4102, Australia.
| | - Sudhi Payyappat
- Sydney Water, 1 Smith Street, Parramatta, NSW 2150, Australia
| | - Michele Cassidy
- Sydney Water, 1 Smith Street, Parramatta, NSW 2150, Australia
| | - Nathan Harrison
- Sydney Water, 1 Smith Street, Parramatta, NSW 2150, Australia
| | - Colin Besley
- Sydney Water, 1 Smith Street, Parramatta, NSW 2150, Australia
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Prazukin AV, Anufriieva EV, Shadrin NV. WITHDRAWN: Unlimited possibilities to use Сladophora (Chlorophyta, Ulvophyceae, Cladophorales) biomass in agriculture and aquaculture with profit for the environment and humanity. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 884:163894. [PMID: 37146795 DOI: 10.1016/j.scitotenv.2023.163894] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2023] [Revised: 04/13/2023] [Accepted: 04/27/2023] [Indexed: 05/07/2023]
Abstract
This article has been withdrawn: please see Elsevier Policy on Article Withdrawal (https://www.elsevier.com/about/policies/article-withdrawal). This article has been withdrawn at the request of the Publisher for legal reasons related to Elsevier's policy on Geographic Sanctions (https://www.elsevier.com/about/policies/trade-sanctions).
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Affiliation(s)
- Alexander V Prazukin
- A.O. Kovalevsky Institute of Biology of the Southern Seas of RAS, 2 Nakhimov ave., 299011 Sevastopol, Russia
| | - Elena V Anufriieva
- A.O. Kovalevsky Institute of Biology of the Southern Seas of RAS, 2 Nakhimov ave., 299011 Sevastopol, Russia.
| | - Nickolai V Shadrin
- A.O. Kovalevsky Institute of Biology of the Southern Seas of RAS, 2 Nakhimov ave., 299011 Sevastopol, Russia
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Ahmed W, Payyappat S, Cassidy M, Harrison N, Besley C. Microbial source tracking of untreated human wastewater and animal scats in urbanized estuarine waters. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 877:162764. [PMID: 36907409 DOI: 10.1016/j.scitotenv.2023.162764] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/08/2023] [Revised: 03/04/2023] [Accepted: 03/06/2023] [Indexed: 05/06/2023]
Abstract
The study assessed the performance characteristics of host sensitivity, host specificity and concentration for seven human wastewater- and six animal scat-associated marker genes by analysing human wastewater and animal scat samples from urban catchments of the mega-coastal city of Sydney, Australia. Absolute host sensitivity was exhibited across three criteria used to assess seven human wastewater-associated marker genes of cross-assembly phage (CrAssphage), human adenovirus (HAdV), Bacteroides HF183 (HF183), human polyomavirus (HPyV), Lachnospiraceae (Lachno3), Methnobrevibacter smithii nifH (nifH) and pepper mild mottle virus (PMMoV). In contrast, only the horse scat-associated marker gene Bacteroides HoF597 (HoF597) exhibited absolute host sensitivity. The absolute host specificity value of 1.0 was returned for the wastewater-associated marker genes of HAdV, HPyV, nifH and PMMoV for each of the three applied host specificity calculation criteria, while values of >0.9 were returned for CrAssphage and Lachno3. Ruminants and cow scat-associated marker genes of BacR and CowM2, respectively exhibited the absolute host specificity value of 1.0. Concentrations of Lachno3 were greater in most human wastewater samples followed by CrAssphage, HF183, nifH, HPyV, PMMoV and HAdV. Human wastewater marker genes were detected in several scat samples from cats and dogs, and this suggests concordant sampling of animal scat-associated marker genes and at least two human wastewater-associated marker genes will be required to assist in interpretation of fecal sources in environmental waters. A greater prevalence, together with several samples with greater concentrations of human wastewater-associated marker genes PMMoV and CrAssphage warrant consideration by water quality managers for the detection of diluted human fecal pollution in estuarine waters.
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Affiliation(s)
- Warish Ahmed
- CSIRO Environment, Ecosciences Precinct, 41 Boggo Road, Dutton Park, QLD 4102, Australia.
| | - Sudhi Payyappat
- Sydney Water, 1 Smith Street, Parramatta, NSW 2150, Australia
| | - Michele Cassidy
- Sydney Water, 1 Smith Street, Parramatta, NSW 2150, Australia
| | - Nathan Harrison
- Sydney Water, 1 Smith Street, Parramatta, NSW 2150, Australia
| | - Colin Besley
- Sydney Water, 1 Smith Street, Parramatta, NSW 2150, Australia
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5
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Wang Y, Zhou P, Zhou W, Huang S, Peng C, Li D, Li G. Network Analysis Indicates Microbial Assemblage Differences in Life Stages of Cladophora. Appl Environ Microbiol 2023; 89:e0211222. [PMID: 36880773 PMCID: PMC10057885 DOI: 10.1128/aem.02112-22] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2022] [Accepted: 02/09/2023] [Indexed: 03/08/2023] Open
Abstract
Cladophora represents a microscopic forest that provides many ecological niches and fosters a diverse microbiota. However, the microbial community on Cladophora in brackish lakes is still poorly understood. In this study, the epiphytic bacterial communities of Cladophora in Qinghai Lake were investigated at three life stages (attached, floating, and decomposing). We found that in the attached stage, Cladophora was enriched with chemoheterotrophic and aerobic microorganisms, including Yoonia-Loktanella and Granulosicoccus. The proportion of phototrophic bacteria was higher in the floating stage, especially Cyanobacteria. The decomposing stage fostered an abundance of bacteria that showed vertical heterogeneity from the surface to the bottom. The surface layer of Cladophora contained mainly stress-tolerant chemoheterotrophic and photoheterotrophic bacteria, including Porphyrobacter and Nonlabens. The microbial community in the middle layer was similar to that of floating-stage Cladophora. Purple oxidizing bacteria were enriched in the bottom layer, with Candidatus Chloroploca, Allochromatium, and Thiocapsa as the dominant genera. The Shannon and Chao1 indices of epibiotic bacterial communities increased monotonically from the attached stage to the decomposing stage. Microbial community composition and functional predictions indicate that a large number of sulfur cycle-associated bacteria play an important role in the development of Cladophora. These results suggest that the microbial assemblage on Cladophora in a brackish lake is complex and contributes to the cycling of materials. IMPORTANCE Cladophora represents a microscopic forest that provides many ecological niches fostering a diverse microbiota, with a complex and intimate relationship between Cladophora and bacteria. Many studies have focused on the microbiology of freshwater Cladophora, but the composition and succession of microorganisms in different life stages of Cladophora, especially in brackish water, have not been explored. In this study, we investigated the microbial assemblages in the life stages of Cladophora in the brackish Qinghai Lake. We show that heterotrophic and photosynthetic autotrophic bacteria are enriched in attached and floating Cladophora, respectively, whereas the epiphytic bacterial community shows vertical heterogeneity in decomposing mats.
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Affiliation(s)
- Yuming Wang
- State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, People’s Republic of China
- University of Chinese Academy of Sciences, Beijing, People’s Republic of China
| | - Panpan Zhou
- State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, People’s Republic of China
- University of Chinese Academy of Sciences, Beijing, People’s Republic of China
| | - Weicheng Zhou
- College of Chemistry, Biology and Environmental Engineering, Xiangnan University, Chenzhou, People’s Republic of China
| | - Shun Huang
- University of Chinese Academy of Sciences, Beijing, People’s Republic of China
- Key Laboratory of Algal Biology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, People’s Republic of China
| | - Chengrong Peng
- Key Laboratory of Algal Biology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, People’s Republic of China
| | - Dunhai Li
- Key Laboratory of Algal Biology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, People’s Republic of China
| | - Genbao Li
- State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, People’s Republic of China
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Wang Y, Wang D, Zhao W, Liu H, Li L, Bai J. Inhibitory effect and mechanism of a compound essential oils on Cladophora glomerata. MARINE POLLUTION BULLETIN 2023; 188:114668. [PMID: 36736262 DOI: 10.1016/j.marpolbul.2023.114668] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/21/2022] [Revised: 01/07/2023] [Accepted: 01/23/2023] [Indexed: 06/18/2023]
Abstract
Cladophora glomerata (C. glomerata) is a typical macroalgae inducing green tide and affecting economic benefits in aquaculture. A high-efficiency, environment friendly compound essential oils (CEOs) was provided to control C. glomerata blooms. The inhibition effect of CEOs against C. glomerata was assessed through the growth, cellular morphology and the physiological and biochemical indexes of C. glomerata. Results of the Chl-a content indicated that 300 μL/L CEOs could significantly inhibited the growth (85 % ± 2 %) of C. glomerata on the 11th day; the damage degree of algal thallus can be observed based on the results of cell morphology; the results of the physiological and biochemical indicators presented the decreased photosynthetic capacity, the dysfunction of antioxidant system and the algal apoptosis gene caspase- 8, 9, 3 activated when C. glomerata exposed to CEOs. This study elucidated the effect and mechanism of CEOs control the green tide induced by C. glomerata.
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Affiliation(s)
- Yanqun Wang
- College of Environmental Science and Engineering, Ocean University of China, Qingdao 266100, China
| | - Dengyu Wang
- College of Environmental Science and Engineering, Ocean University of China, Qingdao 266100, China
| | - Wenxi Zhao
- Marine Science Research Institute of Shandong Province, National Oceanographic Center, Qingdao, Qingdao 266100, China
| | - Hongjun Liu
- Marine Science Research Institute of Shandong Province, National Oceanographic Center, Qingdao, Qingdao 266100, China
| | - Li Li
- Marine Science Research Institute of Shandong Province, National Oceanographic Center, Qingdao, Qingdao 266100, China.
| | - Jie Bai
- College of Environmental Science and Engineering, Ocean University of China, Qingdao 266100, China.
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7
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Valenca R, Garcia L, Espinosa C, Flor D, Mohanty SK. Can water composition and weather factors predict fecal indicator bacteria removal in retention ponds in variable weather conditions? THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 838:156410. [PMID: 35662595 DOI: 10.1016/j.scitotenv.2022.156410] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/16/2022] [Revised: 05/16/2022] [Accepted: 05/30/2022] [Indexed: 06/15/2023]
Abstract
Retention ponds provide benefits including flood control, groundwater recharge, and water quality improvement, but changes in weather conditions could limit the effectiveness in improving microbial water quality metrics. The concentration of fecal indicator bacteria (FIB), which is used as regulatory standards to assess microbial water quality in retention ponds, could vary widely based on many factors including local weather and influent water chemistry and composition. In this critical review, we analyzed 7421 data collected from 19 retention ponds across North America listed in the International Stormwater BMP Database to examine if variable FIB removal in the field conditions can be predicted based on changes in these weather and water composition factors. Our analysis confirms that FIB removal in retention ponds is sensitive to weather conditions or seasons, but temperature and precipitation data may not describe the variable FIB removal. These weather conditions affect suspended solid and nutrient concentrations, which in turn could affect FIB concentration in the ponds. Removal of total suspended solids and total P only explained 5% and 12% of FIB removal data, respectively, and TN removal had no correlation with FIB removal. These results indicate that regression-based modeling with a single parameter as input has limited use to predict FIB removal due to the interactive nature of their effects on FIB removal. In contrast, machine learning algorithms such as the random forest method were able to predict 65% of the data. The overall analysis indicates that the machine learning model could play a critical role in predicting microbial water quality of surface waters under complex conditions where the variation of both water composition and weather conditions could deem regression-based modeling less effective.
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Affiliation(s)
- Renan Valenca
- Department of Civil and Environmental Engineering, University of California Los Angeles, CA, USA.
| | - Lilly Garcia
- Department of Civil and Environmental Engineering, University of California Los Angeles, CA, USA
| | - Christina Espinosa
- Department of Civil and Environmental Engineering, University of California Los Angeles, CA, USA
| | - Dilara Flor
- Department of Civil and Environmental Engineering, University of California Los Angeles, CA, USA
| | - Sanjay K Mohanty
- Department of Civil and Environmental Engineering, University of California Los Angeles, CA, USA.
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Kobayashi M, Zhang Q, Segawa T, Maeda M, Hirano R, Okabe S, Ishii S. Temporal dynamics of Campylobacter and Arcobacter in a freshwater lake that receives fecal inputs from migratory geese. WATER RESEARCH 2022; 217:118397. [PMID: 35421690 DOI: 10.1016/j.watres.2022.118397] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/20/2021] [Revised: 03/26/2022] [Accepted: 04/01/2022] [Indexed: 06/14/2023]
Abstract
Migratory geese could influence the microbiological water quality; however, their impacts on pathogen dynamics remain largely unknown. In this study, we analyzed the population dynamics of Campylobacter and Arcobacter group bacteria (AGB) in a freshwater lake in Japan over two years. The bacteria were quantified by using both culture-dependent and -independent methods. The potential sources of these bacteria were examined by a high-throughput flaA sequencing approach. Campylobacter was abundantly detected both by culture-dependent and -independent methods in the lake, especially when migratory geese were present in the lake. High-throughput flaA sequencing suggests that geese were the likely source of Campylobacter in the lake. The viable population of Campylobacter exceeds the concentrations that can potentially cause 10-4 infections per person per year when water is used to grow fresh vegetables. The occurrence of AGB, on the other hand, was not directly related to the population of migratory geese. AGB were not detected in geese fecal samples. Diverse AGB flaA genotypes occurred in the lake over multiple seasons. Our results suggest that AGB likely comprise a part of the indigenous microbial population of the lake and grow in response to high nutrient, warm temperature, and low dissolved oxygen concentrations in the lake. Geese therefore can indirectly impact the AGB population by providing nutrients to cause eutrophication and lower the dissolved oxygen concentration. Since geese travel long-distance and disperse their fecal microbiota and nutrients to wide areas, they may have significant impacts on water quality and public health.
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Affiliation(s)
- Mayumi Kobayashi
- Division of Environmental Engineering, Graduate School of Engineering, Hokakido University, Sapporo, Japan; BioTechnology Institute, University of Minnesota, St. Paul, MN, USA
| | - Qian Zhang
- BioTechnology Institute, University of Minnesota, St. Paul, MN, USA
| | - Takahiro Segawa
- Center for Life Science Research, University of Yamanashi, Yamanashi, Japan
| | - Mitsuto Maeda
- Division of Environmental Engineering, Graduate School of Engineering, Hokakido University, Sapporo, Japan
| | - Reiko Hirano
- Division of Environmental Engineering, Graduate School of Engineering, Hokakido University, Sapporo, Japan
| | - Satoshi Okabe
- Division of Environmental Engineering, Graduate School of Engineering, Hokakido University, Sapporo, Japan
| | - Satoshi Ishii
- Division of Environmental Engineering, Graduate School of Engineering, Hokakido University, Sapporo, Japan; BioTechnology Institute, University of Minnesota, St. Paul, MN, USA; Department of Soil, Water, and Climate, University of Minnesota, St. Paul, MN, USA.
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9
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Zooplankton as a Transitional Host for Escherichia coli in Freshwater. Appl Environ Microbiol 2022; 88:e0252221. [PMID: 35416683 PMCID: PMC9088391 DOI: 10.1128/aem.02522-21] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
This study shows that Escherichia coli can be temporarily enriched in zooplankton under natural conditions and that these bacteria can belong to different phylogroups and sequence types (STs), including environmental, clinical, and animal isolates. We isolated 10 E. coli strains and sequenced the genomes of two of them. Phylogenetically, the two isolates were closer to strains isolated from poultry meat than to freshwater E. coli, albeit their genomes were smaller than those of the poultry isolates. After isolation and fluorescent protein tagging of strains ED1 and ED157, we show that Daphnia sp. can take up these strains and release them alive again, thus becoming a temporary host for E. coli. In a chemostat experiment, we show that this association does not prolong bacterial long-term survival, but at low abundances it also does not significantly reduce bacterial numbers. We demonstrate that E. coli does not belong to the core microbiota of Daphnia, suffers from competition by the natural Daphnia microbiota, but can profit from its carapax to survive in water. All in all, this study suggests that the association of E. coli with Daphnia is only temporary, but the cells are viable therein, and this might allow encounters with other bacteria for genetic exchange and potential genomic adaptation to the freshwater environment. IMPORTANCE The contamination of freshwater with feces-derived bacteria is a major concern regarding drinking water acquisition and recreational activities. Ecological interactions promoting their persistence are still very scarcely studied. This study, which analyses the survival of E. coli in the presence of zooplankton, is thus of ecological and water safety relevance.
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Fang T, Zhang Z, Wang H, Rogers M, Cui Q. Insights into effects of algae on decay and distribution of bacterial pathogens in recreational water: Implications for microbial risk management. J Environ Sci (China) 2022; 113:92-103. [PMID: 34963553 DOI: 10.1016/j.jes.2021.05.037] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2020] [Revised: 05/24/2021] [Accepted: 05/24/2021] [Indexed: 06/14/2023]
Abstract
The decay and distribution of bacterial pathogens in water is an important information for the health risk assessment to guide water safety management, and suspended algae might affect bacterial pathogens in water. This study established microcosms to investigate the effects of algae-related factors on the representative indicators and opportunistic pathogen species in water. We found that suspended algae increased the persistence of targeted species by 1-2 orders of magnitude of concentrations compared to microcosms without algae; and the effect of algae on microbial survival was affected by water nutrient levels (i.e., carbon, nitrogen and phosphorus), as the increased microbial persistence were correlated to the increased algae concentrations with more nutrient supplies. Moreover, decay and distribution profiles of representative species were determined. The three opportunistic pathogen species (Pseudomonas aeruginosa, Aeromonas hydrophila and Staphylococcus aureus) showed lower decay rates (0.82-0.98/day, 0.76-0.98/day, 0.63-0.87/day) largely affected by algae-related factors, while the enteric species (Escherichia coli and Enterococcus faecalis) had higher decay rates (0.94-1.31/day, 0.89-1.21/day) with little association with algae, indicating the propensity for attachment to algae is an important parameter in microbial fate. Together results suggest suspended algae played an evident role in the decay and distribution of bacterial pathogens, providing important implications regarding microbial safety in recreational water.
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Affiliation(s)
- Tingting Fang
- State Key Joint Laboratory on Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China
| | - Zuotao Zhang
- State Key Joint Laboratory on Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China
| | - Hui Wang
- State Key Joint Laboratory on Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China.
| | - Matt Rogers
- Department of Civil and Environmental Engineering, National University of Singapore, Engineering Drive 3, 117576, Singapore
| | - Qijia Cui
- State Key Joint Laboratory on Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China
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Cho KH, Wolny J, Kase JA, Unno T, Pachepsky Y. Interactions of E. coli with algae and aquatic vegetation in natural waters. WATER RESEARCH 2022; 209:117952. [PMID: 34965489 DOI: 10.1016/j.watres.2021.117952] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2021] [Revised: 11/27/2021] [Accepted: 12/05/2021] [Indexed: 06/14/2023]
Abstract
Both algae and bacteria are essential inhabitants of surface waters. Their presence is of ecological significance and sometimes of public health concern triggering various control actions. Interactions of microalgae, macroalgae, submerged aquatic vegetation, and bacteria appear to be important phenomena necessitating a deeper understanding by those involved in research and management of microbial water quality. Given the long-standing reliance on Escherichia coli as an indicator of the potential presence of pathogens in natural waters, understanding its biology in aquatic systems is necessary. The major effects of algae and aquatic vegetation on E. coli growth and survival, including changes in the nutrient supply, modification of water properties and constituents, impact on sunlight radiation penetration, survival as related to substrate attachment, algal mediation of secondary habitats, and survival inhibition due to the release of toxic substances and antibiotics, are discussed in this review. An examination of horizontal gene transfer and antibiotic resistance potential, strain-specific interactions, effects on the microbial, microalgae, and grazer community structure, and hydrodynamic controls is given. Outlooks due to existing and expected consequences of climate change and advances in observation technologies via high-resolution satellite imaging, unmanned aerial vehicles (drones), and mathematical modeling are additionally covered. The multiplicity of interactions among bacteria, algae, and aquatic vegetation as well as multifaceted impacts of these interactions, create a wide spectrum of research opportunities and technology developments.
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Affiliation(s)
- Kyung Hwa Cho
- Department of Urban and Environmental Engineering, Ulsan National Institute of Science and Technology, Ulsan, Republic of Korea
| | - Jennifer Wolny
- Division of Microbiology, Office of Regulatory Science, Center of Food Safety and Applied Nutrition, U.S. Food and Drug Administration, USA
| | - Julie A Kase
- Division of Microbiology, Office of Regulatory Science, Center of Food Safety and Applied Nutrition, U.S. Food and Drug Administration, USA
| | - Tatsui Unno
- College of Applied Life Science, Jeju National University, Republic of Korea
| | - Yakov Pachepsky
- Environmental Microbial and Food Safety Laboratory, Agricultural Research Service, U.S. Department of Agriculture, USA.
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12
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Tomenchok LE, Abdool-Ghany AA, Elmir SM, Gidley ML, Sinigalliano CD, Solo-Gabriele HM. Trends in regional enterococci levels at marine beaches and correlations with environmental, global oceanic changes, community populations, and wastewater infrastructure. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 793:148641. [PMID: 34328980 DOI: 10.1016/j.scitotenv.2021.148641] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/06/2021] [Revised: 06/19/2021] [Accepted: 06/20/2021] [Indexed: 06/13/2023]
Abstract
An increase in the number of advisories issued for recreational beaches across south Florida (due to the fecal indicator bacteria, enterococci) has been observed in recent years. To evaluate the possible reasons for this increase, we reviewed weekly monitoring data for 18 beaches in Miami-Dade County, Florida, for the years 2000-2019. Our objective was to evaluate this dataset for trends in enterococci levels and correlations with various factors that might have influenced enterococci levels at these beaches. For statistical analyses, we divided the 20-year period of record into 5-year increments (2000-2004, 2005-2009, 2010-2014, and 2015-2019). The Wilcoxon rank sum test was used to identify statistically significant differences between the geometric mean of different periods. When all 18 beaches were collectively considered, a significant increase (p = 0.03) in enterococci was observed during 2015-2019, compared to the prior 15-year period of record. To better understand the potential causes for this increase, correlations were evaluated with environmental parameters (rainfall, air temperature, and water temperature), global oceanic changes (sea level and Sargassum), community populations (county population estimates and beach visitation numbers), and wastewater infrastructure (sewage effluent flow rates to ocean outfalls and deep well injection). In relation to the enterococci geometric mean, the correlation with Sargassum was statistically significant at a 95% confidence interval (p = 0.035). Population (p = 0.078), air temperature (p = 0.092), and sea level (p = 0.098) were statistically significant at 90% confidence intervals. Rainfall, water temperature, beach visitation numbers, and sewage effluent flow rates via deep well injection had positive correlations but were not significant factors. Sewage effluent flow rates to ocean outfalls had a negative correlation.
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Affiliation(s)
- Lara E Tomenchok
- Department of Civil, Architectural, and Environmental Engineering, University of Miami, Coral Gables, FL 33146, USA
| | - Afeefa A Abdool-Ghany
- Department of Civil, Architectural, and Environmental Engineering, University of Miami, Coral Gables, FL 33146, USA
| | - Samir M Elmir
- Miami-Dade County Health Department, 1725 NW 167 Street, Miami, FL 33056, USA
| | - Maribeth L Gidley
- University of Miami, Cooperative Institute for Marine and Atmospheric Studies (CIMAS), Miami, FL 33149, USA; National Oceanic and Atmospheric Administration (NOAA), Atlantic Oceanographic and Meteorological Laboratory (AOML), Miami, FL 33149, USA
| | - Christopher D Sinigalliano
- National Oceanic and Atmospheric Administration (NOAA), Atlantic Oceanographic and Meteorological Laboratory (AOML), Miami, FL 33149, USA
| | - Helena M Solo-Gabriele
- Department of Civil, Architectural, and Environmental Engineering, University of Miami, Coral Gables, FL 33146, USA.
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13
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Ruen-Pham K, Graham LE, Satjarak A. Spatial Variation of Cladophora Epiphytes in the Nan River, Thailand. PLANTS (BASEL, SWITZERLAND) 2021; 10:2266. [PMID: 34834629 PMCID: PMC8622721 DOI: 10.3390/plants10112266] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/29/2021] [Revised: 10/19/2021] [Accepted: 10/20/2021] [Indexed: 11/16/2022]
Abstract
Cladophora is an algal genus known to be ecologically important. It provides habitats for microorganisms known to provide ecological services such as biosynthesis of cobalamin (vitamin B12) and nutrient cycling. Most knowledge of microbiomes was obtained from studies of lacustrine Cladophora species. However, whether lotic freshwater Cladophora microbiomes are as complex as the lentic ones or provide similar ecological services is not known. To illuminate these issues, we used amplicons of 16S rDNA, 18S rDNA, and ITS to investigate the taxonomy and diversity of the microorganisms associated with replicate Cladophora samples from three sites along the Nan River, Thailand. Results showed that the diversity of prokaryotic and eukaryotic members of Cladophora microbiomes collected from different sampling sites was statistically different. Fifty percent of the identifiable taxa were shared across sampling sites: these included organisms belonging to different trophic levels, decomposers, and heterotrophic bacteria. These heterogeneous assemblages of bacteria, by functional inference, have the potential to perform various ecological functions, i.e., cellulose degradation, cobalamin biosynthesis, fermentative hydrogen production, ammonium oxidation, amino acid fermentation, dissimilatory reduction of nitrate to ammonium, nitrite reduction, nitrate reduction, sulfur reduction, polyphosphate accumulation, denitrifying phosphorus-accumulation, and degradation of aromatic compounds. Results suggested that river populations of Cladophora provide ecologically important habitat for microorganisms that are key to nutrient cycling in lotic ecosystems.
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Affiliation(s)
- Karnjana Ruen-Pham
- Plants of Thailand Research Unit, Department of Botany, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand;
| | - Linda E. Graham
- Department of Botany, University of Wisconsin-Madison, 430 Lincoln Drive, Madison, WI 53706, USA;
| | - Anchittha Satjarak
- Plants of Thailand Research Unit, Department of Botany, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand;
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14
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Fu J, Chiang ELC, Medriano CAD, Li L, Bae S. Rapid quantification of fecal indicator bacteria in water using the most probable number - loop-mediated isothermal amplification (MPN-LAMP) approach on a polymethyl methacrylate (PMMA) microchip. WATER RESEARCH 2021; 199:117172. [PMID: 33991777 DOI: 10.1016/j.watres.2021.117172] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/04/2020] [Revised: 04/13/2021] [Accepted: 04/15/2021] [Indexed: 05/22/2023]
Abstract
Fecal contamination of water and its associated pathogens are a major public health concern in both developing and industrialized areas. Fecal indicator bacteria (FIB) are commonly used to assess microbial water quality, but they require a relatively long period of incubation time. Currently, molecular techniques have been applied to rapidly detect FIB. However, these molecular techniques require expensive and sophisticated equipment. In this study, we developed a rapid on-chip gene quantification method based on loop-mediated isothermal amplification (LAMP) PCR. The LAMP assays can measure the target genes of the fecal indicator bacteria (FIB), including E. coli and Enterococcus spp, using the most probable number (MPN) approach. The colorimetric LAMP assay allows for naked-eye observation of the PCR reaction as few as 4 gene copies / well. When the reaction ends, MPN measurement of positive outcomes on the white-based PMMA (polymethacrylic acid) microchips provides the concentrations of the target genes of FIB with a confidence interval. We validated the feasibility of the MPN-LAMP approach by obtaining a strong correlation between the results of the MPN estimations and the qPCR analysis. Moreover, the MPN-LAMP approach was used to quantify the FIB in different environmental water collected from the freshwater reservoirs, beach, agriculture farm, and sewage. Our research demonstrates that the MPN- LAMP method enables us to easily and quickly quantifying FIB genes isolated from the environment without expensive qPCR instruments.
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Affiliation(s)
- Jing Fu
- Department of Civil and Environmental Engineering, National University of Singapore, Block E2-04-07, No.1 Engineering Drive 2, Singapore 117576, Singapore
| | - Elaine Li Ching Chiang
- Department of Civil and Environmental Engineering, National University of Singapore, Block E2-04-07, No.1 Engineering Drive 2, Singapore 117576, Singapore
| | - Carl Angelo Dulatre Medriano
- Department of Civil and Environmental Engineering, National University of Singapore, Block E2-04-07, No.1 Engineering Drive 2, Singapore 117576, Singapore
| | - Liyan Li
- Department of Civil and Environmental Engineering, National University of Singapore, Block E2-04-07, No.1 Engineering Drive 2, Singapore 117576, Singapore
| | - Sungwoo Bae
- Department of Civil and Environmental Engineering, National University of Singapore, Block E2-04-07, No.1 Engineering Drive 2, Singapore 117576, Singapore.
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15
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Wang X, Li H, Zhan X, Ma M, Yuan D, Hu Q, Gong Y. Development and application of quantitative real-time PCR based on the mitochondrial cytochrome oxidase subunit I gene for early detection of the grazer Poterioochromonas malhamensis contaminating Chlorella culture. ALGAL RES 2021. [DOI: 10.1016/j.algal.2020.102133] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
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16
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Management of the Phosphorus–Cladophora Dynamic at a Site on Lake Ontario Using a Multi-Module Bioavailable P Model. WATER 2021. [DOI: 10.3390/w13030375] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
The filamentous green alga Cladophora grows to nuisance proportions in Lake Ontario. Stimulated by high phosphorus concentrations, nuisance growth results in the degradation of beaches and clogging of industrial water intakes with attendant loss of beneficial uses. We develop a multi-module bioavailable phosphorus model to examine the efficacy of phosphorus management strategies in mitigating nuisance algal growth. The model platform includes modules simulating hydrodynamics (FVCOM), phosphorus-phytoplankton dynamics (GEM) and Cladophora growth (GLCMv3). The model is applied along a 25 km stretch of the Lake Ontario nearshore, extending east from Toronto, ON and receiving effluent from three wastewater treatment plants. Simulation results identify the Duffin Creek wastewater treatment plant effluent as a driving force for nuisance conditions of Cladophora growth, as reflected in effluent bioavailable phosphorus concentrations and the dimensions of the plant’s phosphorus footprint. Simulation results demonstrate that phosphorus removal by chemically enhanced secondary treatment is insufficient to provide relief from nuisance conditions. Tertiary treatment (chemically enhanced secondary treatment with ballasted flocculation) is shown to eliminate phosphorus-saturated conditions associated with the Duffin Creek wastewater treatment plant effluent, providing local relief from nuisance conditions. Management guidance presented here has wider application at sites along the highly urbanized Canadian nearshore of Lake Ontario.
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17
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Devane ML, Moriarty E, Weaver L, Cookson A, Gilpin B. Fecal indicator bacteria from environmental sources; strategies for identification to improve water quality monitoring. WATER RESEARCH 2020; 185:116204. [PMID: 32745743 DOI: 10.1016/j.watres.2020.116204] [Citation(s) in RCA: 44] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/11/2019] [Revised: 07/13/2020] [Accepted: 07/19/2020] [Indexed: 06/11/2023]
Abstract
In tropical to temperate environments, fecal indicator bacteria (FIB), such as enterococci and Escherichia coli, can persist and potentially multiply, far removed from their natural reservoir of the animal gut. FIB isolated from environmental reservoirs such as stream sediments, beach sand and vegetation have been termed "naturalized" FIB. In addition, recent research suggests that the intestines of poikilothermic animals such as fish may be colonized by enterococci and E. coli, and therefore, these animals may contribute to FIB concentrations in the aquatic environment. Naturalized FIB that are derived from fecal inputs into the environment, and subsequently adapted to maintain their population within the non-host environment are termed "naturalized enteric FIB". In contrast, an additional theory suggests that some "naturalized" FIB diverged from enteric FIB many millions of years ago and are now normal inhabitants of the environment where they are referred to as "naturalized non-enteric FIB". In the case of the Escherichia genus, the naturalized non-enteric members are identified as E. coli during routine water quality monitoring. An over-estimation of the health risk could result when these naturalized, non-enteric FIB, (that is, not derived from avian or mammalian fecal contamination), contribute to water quality monitoring results. It has been postulated that these environmental FIB belonging to the genera Escherichia and Enterococcus can be differentiated from enteric FIB by genetic methods because they lack some of the genes required for colonization of the host intestine, and have acquired genes that aid survival in the environment. Advances in molecular tools such as next generation sequencing will aid the identification of genes peculiar or "enriched" in particular habitats to discriminate between enteric and environmental FIB. In this appraisal, we have reviewed the research studying "naturalized" FIB, and discussed the techniques for their differentiation from enteric FIB. This differentiation includes the important distinction between enteric FIB derived from fresh and non-recent fecal inputs, and those truly non-enteric environmental microbes, which are currently identified as FIB during routine water quality monitoring. The inclusion of tools for the identification of naturalized FIB (enteric or environmental) would be a valuable resource for future studies assessing water quality.
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Affiliation(s)
- Megan L Devane
- Institute of Environmental Science and Research Ltd., 27 Creyke Rd, Ilam, Christchurch, New Zealand.
| | - Elaine Moriarty
- Institute of Environmental Science and Research Ltd., 27 Creyke Rd, Ilam, Christchurch, New Zealand
| | - Louise Weaver
- Institute of Environmental Science and Research Ltd., 27 Creyke Rd, Ilam, Christchurch, New Zealand
| | - Adrian Cookson
- AgResearch Ltd., Hopkirk Research Institute, Massey University, Palmerston North, New Zealand; mEpiLab, School of Veterinary Sciences, Massey University, Palmerston North, New Zealand
| | - Brent Gilpin
- Institute of Environmental Science and Research Ltd., 27 Creyke Rd, Ilam, Christchurch, New Zealand
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18
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Saingam P, Li B, Yan T. Fecal indicator bacteria, direct pathogen detection, and microbial community analysis provide different microbiological water quality assessment of a tropical urban marine estuary. WATER RESEARCH 2020; 185:116280. [PMID: 32814164 DOI: 10.1016/j.watres.2020.116280] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/10/2020] [Revised: 08/05/2020] [Accepted: 08/06/2020] [Indexed: 06/11/2023]
Abstract
Urban marine estuaries are often impacted by microbiological contamination that impairs use and affects human health acutely, while limited is known about microbiological water quality in urban marine estuaries in the absence of reported sewage spills. This study used a tropical urban marine estuary, the Ala Wai Canal in Honolulu, Hawaii, as the model system to compare fecal indicator bacteria (FIB) concentrations, bacterial pathogen profiles, and microbial community structures. The FIB Escherichia coli exhibited higher geometric mean 132 CFU/100mL (n=28) than those of enterococci (18 CFU/100mL) and Clostridium perfringens (21 CFU/100mL). Amongst the four pathogens targeted by cultivation methods (Salmonella, Campylobacter, Listeria monocytogenes and Vibrio parahaemolyticus), only was V. parahaemolyticus detected and was detected at high frequency. Microbial community analysis through 16S rRNA gene amplicon sequencing also indicated the high prevalence of Vibrio in the water. The pathogen detection patterns and microbial community structure showed no significant correlation with FIB concentration profiles. Together, the results highlight the limitation of using traditional FIB in assessing water microbiological quality in the tropical urban marine estuary environment, indicating the need for more comprehensive microbial risk assessment approaches such as direct detection of pathogens.
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Affiliation(s)
- Prakit Saingam
- Department of Civil and Environmental Engineering, University of Hawaii at Manoa, Honolulu, HI 96822, United States
| | - Bo Li
- Department of Civil and Environmental Engineering, University of Hawaii at Manoa, Honolulu, HI 96822, United States
| | - Tao Yan
- Department of Civil and Environmental Engineering, University of Hawaii at Manoa, Honolulu, HI 96822, United States.
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19
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Teixeira P, Dias D, Costa S, Brown B, Silva S, Valério E. Bacteroides spp. and traditional fecal indicator bacteria in water quality assessment - An integrated approach for hydric resources management in urban centers. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2020; 271:110989. [PMID: 32579514 DOI: 10.1016/j.jenvman.2020.110989] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/21/2020] [Revised: 05/28/2020] [Accepted: 06/16/2020] [Indexed: 06/11/2023]
Abstract
As part of a sustainable water resources management, the Lisbon municipality identified groundwater and treated wastewater use increase as two opportunities for better and sustainable water use, with natural safeguard for public health as a priority. In this context, the aim of our research was to assess the suitability of the human-associated marker gene Bacteroides HF183 and the cattle feces-associated CowM2, in routine water quality monitoring as indicators for water use and reuse, providing a tool to more accurately assess public health risks. To this intent, Real-Time quantitative PCR was used for detection of human-associated marker gene Bacteroides HF183 and the bovine-associated CowM2, in a total of 67 samples - groundwater and wastewater at three different treatment stages of a Waste Water Treatment Plant, in Lisbon. HF183 marker gene was detected in treated and untreated wastewater samples, with significant concentration reductions from untreated (6,07 E+07 copies/mL) to secondary treated effluent (1,86 E+05 copies/mL) and a further decrease in tertiary treatment (5,74 E+04 copies/mL). In groundwater samples, this marker was also detected in concentrations ranging from 2,63 E+02 copies/mL to 2,24 E+03 copies/mL. CowM2 marker gene on the other hand was only detected in wastewater samples, with concentrations ranging from 2,47 E+02 copies/mL to 1,17 E+04 copies/mL. Our research indicates that the use of Bacteroides spp. in association with traditional fecal indicator bacteria (FIB) is advantageous for water managing entities in urban settings, such as Lisbon, were drainage system failures may occur. An integrated approach thus provides crucial and more adequate information towards mitigation and correction measures when fecal contamination is detected in environmental waters.
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Affiliation(s)
- Pedro Teixeira
- Câmara Municipal de Lisboa, Direcção Municipal Do Ambiente, Estrutura Verde, Clima e Energia, Laboratório de Bromatologia e Águas, Avenida Cidade Do Porto S/N, 1700-111, Lisboa, Portugal; Faculdade de Ciências da Universidade de Lisboa, Centro de Estudos Do Ambiente e Do Mar (CESAM Lisboa), Campo Grande, 1749-016, Lisboa, Portugal; Departamento de Saúde Ambiental, Instituto Nacional de Saúde Doutor Ricardo Jorge, Avenida Padre Cruz, 1649-016, Lisboa, Portugal.
| | - Deodália Dias
- Faculdade de Ciências da Universidade de Lisboa, Centro de Estudos Do Ambiente e Do Mar (CESAM Lisboa), Campo Grande, 1749-016, Lisboa, Portugal
| | - Sílvia Costa
- Câmara Municipal de Lisboa, Direcção Municipal Do Ambiente, Estrutura Verde, Clima e Energia, Laboratório de Bromatologia e Águas, Avenida Cidade Do Porto S/N, 1700-111, Lisboa, Portugal
| | - Bárbara Brown
- Câmara Municipal de Lisboa, Direcção Municipal Do Ambiente, Estrutura Verde, Clima e Energia, Laboratório de Bromatologia e Águas, Avenida Cidade Do Porto S/N, 1700-111, Lisboa, Portugal
| | - Susana Silva
- Departamento de Epidemiologia, Instituto Nacional de Saúde Doutor Ricardo Jorge, Avenida Padre Cruz, 1649-016, Lisboa, Portugal
| | - Elisabete Valério
- Departamento de Saúde Ambiental, Instituto Nacional de Saúde Doutor Ricardo Jorge, Avenida Padre Cruz, 1649-016, Lisboa, Portugal
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20
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Flores-Morales G, Díaz M, Arancibia-Avila P, Muñoz-Carrasco M, Jara-Zapata P, Toledo-Montiel F, Vega-Román E. Removal of nutrients from Organic Liquid Agricultural Waste using filamentous algae. BRAZ J BIOL 2020; 81:544-550. [PMID: 32785467 DOI: 10.1590/1519-6984.224708] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2019] [Accepted: 02/20/2020] [Indexed: 11/22/2022] Open
Abstract
A feasibility analysis of tertiary treatment for Organic Liquid Agricultural Waste is presented using filamentous algae belonging to the genus Cladophora sp. as an alternative to chemical tertiary treatment. The main advantages of tertiary treatments that use biological systems are the low cost investment and the minimal dependence on environmental variables. In this work we demonstrate that filamentous algae reduces the nutrient load of nitrate (circa 75%) and phosphate (circa 86%) from the organic waste effluents coming from dairy farms after nine days of culture, with the added advantage being that after the treatment period, algae removal can be achieved by simple procedures. Currently, the organic wastewater is discarded into fields and local streams. However, the algae can acquire value as a by-product since it has various uses as compost, cellulose, and biogas. A disadvantage of this system is that clean water must be used to achieve enough water transparency to allow algae growth. Even so, the nutrient reduction system of the organic effluents proposed is friendly to the ecosystem, compared to tertiary treatments that use chemicals to precipitate and collect nutrients such as nitrates and phosphates.
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Affiliation(s)
- Gonzalo Flores-Morales
- Universidad del Bío-Bío, Facultad de Ciencias, Departamento de Ciencias Básicas, Programa Magister Ciencias Biológicas, Chillán, Chile
| | - Mónica Díaz
- Universidad del Bío-Bío, Facultad de Ciencias, Departamento de Ciencias Básicas, Carrera Ingeniería en Recursos Naturales, Chillán, Chile
| | | | - Michelle Muñoz-Carrasco
- Universidad de Concepción, Facultad de Agronomía, Departamento de Producción Vegetal, Chillán, Chile
| | - Pamela Jara-Zapata
- Universidad de Concepción, Facultad de Agronomía, Departamento de Producción Vegetal, Chillán, Chile
| | - Fernando Toledo-Montiel
- Universidad del Bío-Bío, Facultad de Ciencias, Departamento de Ciencias Básicas, Chillán, Chile
| | - Emmanuel Vega-Román
- Universidad del Bío-Bío, Facultad de Ciencias, Departamento de Ciencias Básicas, Chillán, Chile
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21
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Swinscoe I, Oliver DM, Ørnsrud R, Quilliam RS. The microbial safety of seaweed as a feed component for black soldier fly (Hermetia illucens) larvae. Food Microbiol 2020; 91:103535. [PMID: 32539946 DOI: 10.1016/j.fm.2020.103535] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2020] [Revised: 03/23/2020] [Accepted: 04/23/2020] [Indexed: 01/12/2023]
Abstract
Farmed insects can offer an environmentally sustainable aquafeed or livestock feed ingredient. The value of black soldier fly (Hermetia illucens) (BSF) larvae could be improved by enrichment in omega-3 through the dietary inclusion of seaweed. However, the industry practice of drying seaweed at low temperatures to retain nutritional properties may benefit the survival of human pathogenic bacteria, particularly if the seaweed has been harvested from contaminated water. Here we have demonstrated that E. coli and E. coli O157:H7 died-off in seaweed dried at 50 °C, although both were detected in the dried powder following 72 h storage. V. parahaemolyticus fell below the level of detection in stored seaweed after drying at ≥ 50 °C, but L. monocytogenes remained detectable, and continued to grow in seaweed dried at ≤60 °C. Therefore, drying seaweed at low temperatures risks pathogen carry-over into insects destined for animal feed. BSF larvae reared on an artificially contaminated seaweed-supplemented diet also became contaminated by all four bacteria present in the supplement. Water quality at seaweed harvesting sites, seaweed desiccation, and insect rearing practices, represent critical points where development of regulatory standards could achieve targeted control of pathogenic hazards.
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Affiliation(s)
- Isobel Swinscoe
- Biological and Environmental Sciences, Faculty of Natural Sciences, University of Stirling, Stirling, FK9 4LA, UK.
| | - David M Oliver
- Biological and Environmental Sciences, Faculty of Natural Sciences, University of Stirling, Stirling, FK9 4LA, UK
| | - Robin Ørnsrud
- Institute of Marine Research, P.O. box 1870 Nordnes, NO-5817, Bergen, Norway
| | - Richard S Quilliam
- Biological and Environmental Sciences, Faculty of Natural Sciences, University of Stirling, Stirling, FK9 4LA, UK
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22
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VanMensel D, Chaganti SR, Droppo IG, Weisener CG. Exploring bacterial pathogen community dynamics in freshwater beach sediments: A tale of two lakes. Environ Microbiol 2019; 22:568-583. [PMID: 31736260 DOI: 10.1111/1462-2920.14860] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2019] [Revised: 11/05/2019] [Accepted: 11/13/2019] [Indexed: 11/28/2022]
Abstract
Pathogenic bacteria associated with freshwater ecosystems can pose significant health risks particularly where recreational water use is popular. Common water quality assessments involve quantifying indicator Escherichia coli within the water column but neglect to consider physical and geochemical factors and contributions from the sediment. In this study, we used high-throughput sequencing to investigate sediment microbial communities at four freshwater public beaches in southern Ontario, Canada and analysed community structure, function, and gene expression with relation to geographical characteristics. Our results indicate that beach sediments at the sediment-water interface could serve as potential sources of bacterial contamination under low-energy environments with tightly packed small sediment particles compared with high-energy environments. Further, the absence of pathogens but expression of pathogenic transcripts suggests occurrence of alternate gene acquisition. Pathogenicity at these locations included expression of Salmonella virulence factors, genes involved in pertussis, and antimicrobial resistance. Finally, we introduce a proposed universal bacterial pathogen model to consider the combined and synergistic processes used by these microbes. To our knowledge, this is the first study of its kind to investigate chemolithotrophic activity related to pathogens within bed sediment at freshwater beaches. This work helps advance current understanding of health risks in these environments.
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Affiliation(s)
- Danielle VanMensel
- Great Lakes Institute for Environmental Research, University of Windsor, Ontario, Canada
| | - Subba Rao Chaganti
- Great Lakes Institute for Environmental Research, University of Windsor, Ontario, Canada.,Cooperative Institute for Great Lakes Research, University of Michigan, Ann Arbor, MI, USA
| | - Ian G Droppo
- Environment and Climate Change Canada, Burlington, Ontario, Canada
| | - Christopher G Weisener
- Great Lakes Institute for Environmental Research, University of Windsor, Ontario, Canada
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23
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Zhang Q, Gallard J, Wu B, Harwood VJ, Sadowsky MJ, Hamilton KA, Ahmed W. Synergy between quantitative microbial source tracking (qMST) and quantitative microbial risk assessment (QMRA): A review and prospectus. ENVIRONMENT INTERNATIONAL 2019; 130:104703. [PMID: 31295713 DOI: 10.1016/j.envint.2019.03.051] [Citation(s) in RCA: 44] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/24/2019] [Revised: 03/21/2019] [Accepted: 03/21/2019] [Indexed: 05/20/2023]
Abstract
The use of microbial source tracking (MST) marker genes has grown in recent years due to the need to attribute point and non-point fecal contamination to specific sources. Quantitative microbial risk assessment (QMRA) is a modeling approach used to estimate health risks from exposure to feces-contaminated water and associated pathogens. A combination of these approaches [quantitative MST (qMST) and QMRA] can provide additional pathogen-related information for prioritizing and addressing health risks, compared to reliance on conventional fecal indicator bacteria (FIB). To inform expansion of this approach, a review of published qMST-QMRA studies was conducted to summarize the state of the science and to identify research needs. The reviewed studies primarily aimed to identify what levels of MST marker genes in hypothetical recreational waterbodies would exceed the United States Environmental Protection Agency (USEPA) risk benchmarks for primary contact recreators. The QMRA models calculated relationships between MST marker gene(s) and reference pathogens based on published data in the literature. The development of a robust, accurate relationship was identified as an urgent research gap for qMST-QMRA. This metric requires additional knowledge to quantify the relationship between MST marker genes and the degree of variability in decay of pathogens as a dynamic function of environmental conditions and combinations of fecal sources at multiple spatial and temporal scales. Improved characterization of host shedding rates of host-associated microorganisms (i.e., MST marker genes), as well as fate and transport of these microorganisms and their nucleic acids, would facilitate expansion of this approach to other exposure pathways. Incorporation of information regarding the recovery efficiency, and host-specificity of MST marker genes into QMRA model parameters, and the sensitivity analysis, would greatly improve risk management and site-specific water monitoring criteria.
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Affiliation(s)
- Qian Zhang
- BioTechnology Institute, University of Minnesota, 1479 Gortner Ave, St. Paul, MN 55108, USA
| | - Javier Gallard
- Department of Integrative Biology, SCA 110, University of South Florida, 4202 East Fowler Ave, Tampa, FL 33620, USA
| | - Baolei Wu
- School of Environmental and Municipal Engineering, Xi'an University of Architecture and Technology, No. 13 Yanta Road, Xi'an, Shaanxi 710055, PR China
| | - Valerie J Harwood
- Department of Integrative Biology, SCA 110, University of South Florida, 4202 East Fowler Ave, Tampa, FL 33620, USA
| | - Michael J Sadowsky
- BioTechnology Institute, University of Minnesota, 1479 Gortner Ave, St. Paul, MN 55108, USA; Department of Soil, Water & Climate and Department of Plant & Microbial Biology, University of Minnesota, 1991 Upper Buford Ave, St. Paul, MN 55108, USA
| | - Kerry A Hamilton
- School for Sustainable Engineering and the Built Environment, Arizona State University, 660 S College Ave, Tempe, AZ 85281, USA; The Biodesign Institute Center for Environmental Health Engineering, Arizona State University, 1001 S McAllister Ave, Tempe, AZ 85281, USA
| | - Warish Ahmed
- CSIRO Land and Water, Ecosciences Precinct, 41 Boggo Road, QLD 4102, Australia.
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Ahmed W, Payyappat S, Cassidy M, Besley C. Enhanced insights from human and animal host-associated molecular marker genes in a freshwater lake receiving wet weather overflows. Sci Rep 2019; 9:12503. [PMID: 31467317 PMCID: PMC6715810 DOI: 10.1038/s41598-019-48682-4] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2019] [Accepted: 08/07/2019] [Indexed: 02/06/2023] Open
Abstract
This study investigated the magnitude of wet weather overflow (WWO)-driven sewage pollution in an urban lake (Lake Parramatta) located in Sydney, New South Wales, Australia. Water samples were collected during a dry weather period and after two storm events, and tested for a range of novel and established sewage- [Bacteroides HF183, crAssphage CPQ_056 and pepper mild mottle virus (PMMoV)] and animal feces-associated (Bacteroides BacCan-UCD, cowM2 and Helicobacter spp. associated GFD) microbial source tracking marker genes along with the enumeration of culturable fecal indicator bacteria (FIB), namely Escherichia coli (E. coli) and Enterococcus spp. The magnitude of general and source-specific fecal pollution was low in water samples collected during dry weather compared to storm events. The levels of HF183, crAssphage and PMMoV in water samples collected during storm events were as high as 6.39, 6.33 and 5.27 log10 GC/L of water, respectively. Moderate to strong positive correlations were observed among the quantitative occurrence of sewage-associated marker genes. The concentrations of HF183 and PMMoV in most storm water samples exceeded the risk benchmark threshold values established in the literature for primary contact recreators. None of the samples tested was positive for the cowM2 (cow) marker gene, while BacCan-UCD (dog) and GFD (avian) animal-associated markers were sporadically detected in water samples collected from both dry weather and storm events. Based on the results, the ongoing advice that swimming should be avoided for several days after storm events appears appropriate. Further research to determine the decay rates of sewage-associated marker genes in relation to each other and enteric viruses would help refine current advice. Microbial source tracking approaches employed in this study provided insights into sources of contamination over currently used FIB.
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Affiliation(s)
- Warish Ahmed
- CSIRO Land and Water, Ecosciences Precinct, 41 Boggo Road, Dutton Park, QLD, 4102, Australia.
| | - Sudhi Payyappat
- Sydney Water, 1 Smith Street, Parramatta, NSW, 2150, Australia
| | - Michele Cassidy
- Sydney Water, 1 Smith Street, Parramatta, NSW, 2150, Australia
| | - Colin Besley
- Sydney Water, 1 Smith Street, Parramatta, NSW, 2150, Australia
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Smith RB, Bass B, Sawyer D, Depew D, Watson SB. Estimating the economic costs of algal blooms in the Canadian Lake Erie Basin. HARMFUL ALGAE 2019; 87:101624. [PMID: 31349881 DOI: 10.1016/j.hal.2019.101624] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/05/2018] [Revised: 06/03/2019] [Accepted: 06/05/2019] [Indexed: 06/10/2023]
Abstract
Over the past two decades there has been a re-emergence of regular harmful algal blooms in Lake Erie due to increasing phosphorus loading, mainly from non-point agricultural sources. The Canadian and United States governments have jointly agreed to reduce phosphorus loadings to the lake in order to control the extent and severity of the blooms. Citizens on both sides of the border face a number of economic costs, both market and non-market, as a result of the blooms. This study values these costs for the Canadian portion of the Lake Erie basin economy using standard economic approaches that are widely applied within the world of cost-benefit analysis. The results suggest that algal blooms will impose equivalent annual costs equal to $272 million in 2015 prices over a 30-year period if left unchecked. The largest market costs will be imposed on the tourism industry ($110 million in equivalent annual costs) and the largest non-market costs will be borne by recreational users and those who place inherent value on the lake's quality ($115 million in equivalent annual costs). Management action to reduce phosphorus loadings is found to be justified on economic grounds if the 30-year net present value of the reduction program is less than $1294 million (2015 Canadian dollars).
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Affiliation(s)
- Robert B Smith
- Midsummer Analytics, 397 Third Avenue, Ottawa, Ontario, K1S 2K6, Canada.
| | - Brad Bass
- Great Lakes Harmful Pollutants Section, Environment and Climate Change Canada, Toronto, Canada
| | | | - David Depew
- Watershed Hydrology and Ecology Research Division, Environment and Climate Change Canada, Burlington, Canada
| | - Susan B Watson
- Department of Biology, University of Waterloo, Waterloo, Canada
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26
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Azmuda N, Fakruddin M, Khan SI, Birkeland NK. Bacterial Community Profiling of Tropical Freshwaters in Bangladesh. Front Public Health 2019; 7:115. [PMID: 31214556 PMCID: PMC6554655 DOI: 10.3389/fpubh.2019.00115] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2018] [Accepted: 04/24/2019] [Indexed: 01/25/2023] Open
Abstract
Seasonal and spatial variations in the bacterial communities of two tropical freshwater sources in Bangladesh, Lake Dhanmondi in central Dhaka, and a pond in the outskirts of Dhaka, were assessed and compared using PCR-DGGE and deep sequencing of 16S rRNA genes, as well as heterotrophic enrichments using water samples collected at nine different time points during 1 year. Temporal and spatial variations of common aquatic bacterial genera were observed, but no clear seasonal variations could be depicted. The major bacterial genera identified from these two sites were members of the Proteobacteria, Cyanobacteria, Actinobacteria, Bacteroidetes, Chlorobi, Chloroflexi, Verrucomicrobia, and Firmicutes. Among the proteobacterial groups, members of the α-, β-, and γ- Proteobacteria predominated. γ- Proteobacteria belonging to the Escherichia coli/Shigella group even the diarrheagenic pathotypes of E. coli e.g., EPEC and ETEC were detected in most samples throughout the year, with no apparent correlations with other microbial groups. The other pathotypes, EHEC, EAEC, and EIEC/Shigella spp. were also detected occasionally. This study represents the first thorough analysis of the microbial diversity of tropical freshwater systems in Bangladesh.
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Affiliation(s)
- Nafisa Azmuda
- Department of Microbiology, University of Dhaka, Dhaka, Bangladesh.,Department of Biological Sciences, University of Bergen, Bergen, Norway.,Department of Microbiology, Jahangirnagar University, Savar, Dhaka, Bangladesh
| | - Md Fakruddin
- Department of Microbiology, University of Dhaka, Dhaka, Bangladesh
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Mathai PP, Dunn HM, Magnone P, Zhang Q, Ishii S, Chun CL, Sadowsky MJ. Association between submerged aquatic vegetation and elevated levels of Escherichia coli and potential bacterial pathogens in freshwater lakes. THE SCIENCE OF THE TOTAL ENVIRONMENT 2019; 657:319-324. [PMID: 30543981 DOI: 10.1016/j.scitotenv.2018.11.484] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/23/2018] [Revised: 11/30/2018] [Accepted: 11/30/2018] [Indexed: 05/08/2023]
Abstract
Fecal indicator bacteria such as Escherichia coli have been reported to persist and potentially grow in a wide variety of secondary habitats, such as water, beach sand, sediment, periphyton and some algae. However, little is known about their association with submerged macrophytes and how this may influence water quality. In this study, we examined the association of E. coli and potential bacterial pathogens with Eurasian watermilfoil (EWM), an invasive, submerged, macrophyte that has spread across thousands of lakes in North America. EWM samples were collected from 10 lakes in Minnesota, once a month, for six consecutive months from early summer to late fall. Microbiota associated with EWM were examined using membrane filtration, quantitative PCR targeting various bacterial pathogens and host-associated marker genes, and high-throughput DNA sequencing. E. coli densities were generally elevated on EWM samples, and peaked during warmer months. Moreover, our results showed that EWM could serve as a temporal source for transmission of microbiota to the water column. Several potential pathogenic groups, including Aeromonas, Enterobacteriaceae, and Clostridium were present in significantly greater relative abundance on EWM than in water, and waterfowl was predicted to be the major source of fecal contamination. These findings have water quality implications with respect to the potential for submerged macrophytes to harbor and disperse E. coli and other bacterial pathogens in a large number of waterbodies.
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Affiliation(s)
- Prince P Mathai
- BioTechnology Institute, University of Minnesota, St. Paul, MN, USA
| | - Hannah M Dunn
- BioTechnology Institute, University of Minnesota, St. Paul, MN, USA
| | - Paolo Magnone
- BioTechnology Institute, University of Minnesota, St. Paul, MN, USA
| | - Qian Zhang
- BioTechnology Institute, University of Minnesota, St. Paul, MN, USA
| | - Satoshi Ishii
- BioTechnology Institute, University of Minnesota, St. Paul, MN, USA; Department of Soil, Water, and Climate, University of Minnesota, St. Paul, MN, USA
| | - Chan Lan Chun
- Department of Civil Engineering and National Resources Research Institute, University of Minnesota, Duluth, MN, USA
| | - Michael J Sadowsky
- BioTechnology Institute, University of Minnesota, St. Paul, MN, USA; Department of Soil, Water, and Climate, University of Minnesota, St. Paul, MN, USA; Department of Plant, and Microbial Biology, University of Minnesota, St. Paul, MN, USA.
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29
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Zhang Q, Al-Ghalith GA, Kobayashi M, Segawa T, Maeda M, Okabe S, Knights D, Ishii S. High-Throughput flaA Short Variable Region Sequencing to Assess Campylobacter Diversity in Fecal Samples From Birds. Front Microbiol 2018; 9:2201. [PMID: 30319559 PMCID: PMC6167966 DOI: 10.3389/fmicb.2018.02201] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2018] [Accepted: 08/28/2018] [Indexed: 01/18/2023] Open
Abstract
Current approach to identify sources of human pathogens is largely dependent on the cultivation and isolation of target bacteria. For rapid pathogen source identification, culture-independent strain typing method is necessary. In this study, we designed new primer set that broadly covers flaA short variable region (SVR) of various Campylobacter species, and applied the flaA SVR sequencing method to examine the diversity of Campylobacter spp. in geese fecal samples (n = 16) with and without bacteria cultivation. Twenty-three Campylobacter strains isolated from the 16 geese fecal samples were grouped similarly by conventional flaA restriction fragment length polymorphism (RFLP) method and by the flaA SVR sequencing method, but higher discriminant power was observed in the flaA SVR sequencing approach. For culture-independent flaA SVR sequencing analysis, we developed and optimized the sequence data analysis pipeline to identify as many genotypes as possible, while minimizing the detection of genotypes generated by sequencing errors. By using this pipeline, 51,629 high-quality flaA sequence reads were clustered into 16 operational taxonomic units (=genotypes) by using 98% sequence similarity and >50 sequence duplicates. Almost all flaA genotypes obtained by culture-dependent method were also identified by culture-independent flaA SVR MiSeq sequencing method. In addition, more flaA genotypes were identified probably due to high throughput nature of the MiSeq sequencing. These results suggest that the flaA SVR sequencing could be used to analyze the diversity of Campylobacter spp. without bacteria isolation. This method is promising to rapidly identify potential sources of Campylobacter pathogens.
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Affiliation(s)
- Qian Zhang
- BioTechnology Institute, University of Minnesota, St. Paul, MN, United States
| | - Gabriel A Al-Ghalith
- Bioinformatics and Computational Biology, University of Minnesota, Minneapolis, MN, United States
| | - Mayumi Kobayashi
- Division of Environmental Engineering, Graduate School of Engineering, Hokkaido University, Sapporo, Japan
| | - Takahiro Segawa
- Center for Life Science Research, University of Yamanashi, Yamanashi, Japan.,National Institute of Polar Research, Tokyo, Japan
| | - Mitsuto Maeda
- Division of Environmental Engineering, Graduate School of Engineering, Hokkaido University, Sapporo, Japan
| | - Satoshi Okabe
- Division of Environmental Engineering, Graduate School of Engineering, Hokkaido University, Sapporo, Japan
| | - Dan Knights
- BioTechnology Institute, University of Minnesota, St. Paul, MN, United States.,Bioinformatics and Computational Biology, University of Minnesota, Minneapolis, MN, United States.,Department of Computer Science and Engineering, University of Minnesota, Minneapolis, MN, United States
| | - Satoshi Ishii
- BioTechnology Institute, University of Minnesota, St. Paul, MN, United States.,Division of Environmental Engineering, Graduate School of Engineering, Hokkaido University, Sapporo, Japan.,Department of Soil, Water, and Climate, University of Minnesota, St. Paul, MN, United States
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30
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Use of amplicon sequencing to improve sensitivity in PCR-based detection of microbial pathogen in environmental samples. J Microbiol Methods 2018; 149:73-79. [DOI: 10.1016/j.mimet.2018.05.005] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2018] [Revised: 05/01/2018] [Accepted: 05/06/2018] [Indexed: 11/23/2022]
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31
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Fang T, Cui Q, Huang Y, Dong P, Wang H, Liu WT, Ye Q. Distribution comparison and risk assessment of free-floating and particle-attached bacterial pathogens in urban recreational water: Implications for water quality management. THE SCIENCE OF THE TOTAL ENVIRONMENT 2018; 613-614:428-438. [PMID: 28918274 DOI: 10.1016/j.scitotenv.2017.09.008] [Citation(s) in RCA: 40] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2017] [Revised: 08/30/2017] [Accepted: 09/02/2017] [Indexed: 06/07/2023]
Abstract
The risk of pathogen exposure in recreational water is a concern worldwide. Moreover, suspended particles, as ideal shelters for pathogens, in these waters also need attention. However, the risk caused by the pathogen-particle attachment is largely unknown. Accordingly, water samples in three recreational lakes in Beijing were collected and separated into free-floating (FL, 0.22-5μm) and particle-attached (PA, >5μm) fractions. Next-generation sequencing (NGS) was employed to determine the diversity of genera containing pathogens, and quantitative PCR (qPCR) was used to assess the presence of genes from Escherichia coli (uidA), Salmonella enterica (invA), Aeromonas spp. (aerA), Mycobacterium avium (16S) and Pseudomonas aeruginosa (oaa). The NGS results showed stable pathogen genera composition distinctions between the PA and FL fractions. Some genera, such as Aeromonas and Mycobacterium, exhibited higher abundances in the PA fractions. qPCR revealed that most of the gene concentrations were higher within particles than were FL fractions. Some gene levels showed correlations with the particle concentrations and lake nutrient levels. Further quantitative microbial risk assessment (QMRA) of selected strains (S. enterica and M. avium) indicated a higher health risk during secondary contact activities in lakes with more nutrients and particles. We concluded that suspended particles (mainly composed of algae) in urban recreational water might influence the pathogen distribution and could serve as reservoirs for pathogen contamination, with important management implications.
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Affiliation(s)
- Tingting Fang
- State Key Joint Laboratory on Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China
| | - Qijia Cui
- State Key Joint Laboratory on Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China
| | - Yong Huang
- State Key Joint Laboratory on Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China
| | - Peiyan Dong
- State Key Joint Laboratory on Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China
| | - Hui Wang
- State Key Joint Laboratory on Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China.
| | - Wen-Tso Liu
- Department of Civil and Environmental Engineering, University of Illinois at Urbana Champaign, Urbana, IL 61801, United States
| | - Quanhui Ye
- State Key Joint Laboratory on Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, China
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32
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Ogilvie LA, Nzakizwanayo J, Guppy FM, Dedi C, Diston D, Taylor H, Ebdon J, Jones BV. Resolution of habitat-associated ecogenomic signatures in bacteriophage genomes and application to microbial source tracking. ISME JOURNAL 2017; 12:942-958. [PMID: 29259289 PMCID: PMC5864186 DOI: 10.1038/s41396-017-0015-7] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/15/2017] [Revised: 10/06/2017] [Accepted: 11/11/2017] [Indexed: 12/28/2022]
Abstract
Just as the expansion in genome sequencing has revealed and permitted the exploitation of phylogenetic signals embedded in bacterial genomes, the application of metagenomics has begun to provide similar insights at the ecosystem level for microbial communities. However, little is known regarding this aspect of bacteriophage associated with microbial ecosystems, and if phage encode discernible habitat-associated signals diagnostic of underlying microbiomes. Here we demonstrate that individual phage can encode clear habitat-related 'ecogenomic signatures', based on relative representation of phage-encoded gene homologues in metagenomic data sets. Furthermore, we show the ecogenomic signature encoded by the gut-associated ɸB124-14 can be used to segregate metagenomes according to environmental origin, and distinguish 'contaminated' environmental metagenomes (subject to simulated in silico human faecal pollution) from uncontaminated data sets. This indicates phage-encoded ecological signals likely possess sufficient discriminatory power for use in biotechnological applications, such as development of microbial source tracking tools for monitoring water quality.
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Affiliation(s)
- Lesley A Ogilvie
- School of Pharmacy and Biomolecular Sciences, University of Brighton, Brighton, UK.
| | | | - Fergus M Guppy
- School of Pharmacy and Biomolecular Sciences, University of Brighton, Brighton, UK
| | - Cinzia Dedi
- School of Pharmacy and Biomolecular Sciences, University of Brighton, Brighton, UK
| | - David Diston
- Mikrobiologische & Biotechnologische Risiken Bundesamt für Gesundheit BAG, 3003, Bern, Switzerland
| | - Huw Taylor
- School of Environment and Technology, University of Brighton, Brighton, UK
| | - James Ebdon
- School of Environment and Technology, University of Brighton, Brighton, UK
| | - Brian V Jones
- School of Pharmacy and Biomolecular Sciences, University of Brighton, Brighton, UK.
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Environmental Factors Correlated with Culturable Enterococci Concentrations in Tropical Recreational Waters: A Case Study in Escambron Beach, San Juan, Puerto Rico. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2017; 14:ijerph14121602. [PMID: 29257092 PMCID: PMC5751019 DOI: 10.3390/ijerph14121602] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/08/2017] [Revised: 12/12/2017] [Accepted: 12/16/2017] [Indexed: 01/26/2023]
Abstract
Enterococci concentration variability at Escambron Beach, San Juan, Puerto Rico, was examined in the context of environmental conditions observed during 2005–2015. Satellite-derived sea surface temperature (SST), turbidity, direct normal irradiance, and dew point were combined with local precipitation, winds, and mean sea level (MSL) observations in a stepwise multiple regression analyses (Akaike Information Criteria model selection). Precipitation, MSL, irradiance, SST, and turbidity explained 20% of the variation in observed enterococci concentrations based upon these analyses. Changes in these parameters preceded increases in enterococci concentrations by 24 h up to 11 days, particularly during positive anomalies of turbidity, SST, and 480–960 mm of accumulated (4 days) precipitation, which relates to bacterial ecology. Weaker, yet still significant, increases in enterococci concentrations were also observed during positive dew point anomalies. Enterococci concentrations decreased with elevated irradiance and MSL anomalies. Unsafe enterococci concentrations per US EPA recreational water quality guidelines occurred when 4-day cumulative precipitation ranged 481–960 mm; irradiance < 667 W·m−2; daily average turbidity anomaly >0.005 sr−1; SST anomaly >0.8 °C; and 3-day average MSL anomaly <−18.8 cm. This case study shows that satellite-derived environmental data can be used to inform future water quality studies and protect human health.
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Chun CL, Peller JR, Shively D, Byappanahalli MN, Whitman RL, Staley C, Zhang Q, Ishii S, Sadowsky MJ. Virulence and biodegradation potential of dynamic microbial communities associated with decaying Cladophora in Great Lakes. THE SCIENCE OF THE TOTAL ENVIRONMENT 2017; 574:872-880. [PMID: 27665447 DOI: 10.1016/j.scitotenv.2016.09.107] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/14/2016] [Revised: 09/13/2016] [Accepted: 09/13/2016] [Indexed: 06/06/2023]
Abstract
Cladophora mats that accumulate and decompose along shorelines of the Great Lakes create potential threats to the health of humans and wildlife. The decaying algae create a low oxygen and redox potential environment favoring growth and persistence of anaerobic microbial populations, including Clostridium botulinum, the causal agent of botulism in humans, birds, and other wildlife. In addition to the diverse population of microbes, a dynamic chemical environment is generated, which involves production of numerous organic and inorganic substances, many of which are believed to be toxic to the sand and aquatic biotic communities. In this study, we used 16S-rDNA-based-amplicon sequencing and microfluidic-based quantitative PCR approaches to characterize the bacterial community structure and the abundances of human pathogens associated with Cladophora at different stages (up to 90days) of algal decay in laboratory microcosms. Oxygen levels were largely depleted after a few hours of incubation. As Cladophora decayed, the algal microbial biodiversity decreased within 24h, and the mat transitioned from an aerobic to anaerobic environment. There were increasing abundances of enteric and pathogenic bacteria during decomposition of Cladophora, including Acinetobacter, Enterobacter, Kluyvera, Cedecea, and others. In contrast, there were no or very few sequences (<0.07%) assigned to such groups in fresh Cladophora samples. Principal coordinate analysis indicated that the bacterial community structure was dynamic and changed significantly with decay time. Knowledge of microbial communities and chemical composition of decaying algal mats is critical to our further understanding of the role that Cladophora plays in a beach ecosystem's structure and function, including the algal role in trophic interactions. Based on these findings, public and environmental health concerns should be considered when decaying Cladophora mats accumulate Great Lakes shorelines.
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Affiliation(s)
- Chan Lan Chun
- Department of Civil Engineering, University of Minnesota Duluth, Duluth, MN 55812, United States; Natural Resources Research Institute, University of Minnesota Duluth, Duluth, MN 55812, United States
| | - Julie R Peller
- Department of Chemistry, Valparaiso University, Valparaiso, IN 46383, United States
| | - Dawn Shively
- Lake Michigan Ecological Research Station, U.S. Geological Survey, Chesterton, IN 46304, United States
| | | | - Richard L Whitman
- Lake Michigan Ecological Research Station, U.S. Geological Survey, Chesterton, IN 46304, United States
| | - Christopher Staley
- BioTechnology Institute, University of Minnesota, St. Paul, MN 55108, United States
| | - Qian Zhang
- BioTechnology Institute, University of Minnesota, St. Paul, MN 55108, United States
| | - Satoshi Ishii
- BioTechnology Institute, University of Minnesota, St. Paul, MN 55108, United States; Department of Soil, Water, and Climate, University of Minnesota, St. Paul, MN 55108, United States
| | - Michael J Sadowsky
- BioTechnology Institute, University of Minnesota, St. Paul, MN 55108, United States; Department of Soil, Water, and Climate, University of Minnesota, St. Paul, MN 55108, United States.
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Keswani A, Oliver DM, Gutierrez T, Quilliam RS. Microbial hitchhikers on marine plastic debris: Human exposure risks at bathing waters and beach environments. MARINE ENVIRONMENTAL RESEARCH 2016; 118:10-9. [PMID: 27128352 DOI: 10.1016/j.marenvres.2016.04.006] [Citation(s) in RCA: 178] [Impact Index Per Article: 22.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/13/2016] [Revised: 04/06/2016] [Accepted: 04/10/2016] [Indexed: 05/20/2023]
Abstract
Marine plastic debris is well characterized in terms of its ability to negatively impact terrestrial and marine environments, endanger coastal wildlife, and interfere with navigation, tourism and commercial fisheries. However, the impacts of potentially harmful microorganisms and pathogens colonising plastic litter are not well understood. The hard surface of plastics provides an ideal environment for opportunistic microbial colonisers to form biofilms and might offer a protective niche capable of supporting a diversity of different microorganisms, known as the "Plastisphere". This biotope could act as an important vector for the persistence and spread of pathogens, faecal indicator organisms (FIOs) and harmful algal bloom species (HABs) across beach and bathing environments. This review will focus on the existent knowledge and research gaps, and identify the possible consequences of plastic-associated microbes on human health, the spread of infectious diseases and bathing water quality.
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Affiliation(s)
- Anisha Keswani
- Biological and Environmental Sciences, School of Natural Sciences, University of Stirling, Stirling, FK9 4LA, UK.
| | - David M Oliver
- Biological and Environmental Sciences, School of Natural Sciences, University of Stirling, Stirling, FK9 4LA, UK
| | - Tony Gutierrez
- School of Life Sciences, Herriot Watt University, Edinburgh, EH14 4AS, UK
| | - Richard S Quilliam
- Biological and Environmental Sciences, School of Natural Sciences, University of Stirling, Stirling, FK9 4LA, UK
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Comparison of Methods to Identify Pathogens and Associated Virulence Functional Genes in Biosolids from Two Different Wastewater Treatment Facilities in Canada. PLoS One 2016; 11:e0153554. [PMID: 27089040 PMCID: PMC4835084 DOI: 10.1371/journal.pone.0153554] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2015] [Accepted: 03/31/2016] [Indexed: 12/23/2022] Open
Abstract
The use of treated municipal wastewater residues (biosolids) as fertilizers is an attractive, inexpensive option for growers and farmers. Various regulatory bodies typically employ indicator organisms (fecal coliforms, E. coli and Salmonella) to assess the adequacy and efficiency of the wastewater treatment process in reducing pathogen loads in the final product. Molecular detection approaches can offer some advantages over culture-based methods as they can simultaneously detect a wider microbial species range, including non-cultivable microorganisms. However, they cannot directly assess the viability of the pathogens. Here, we used bacterial enumeration methods together with molecular methods including qPCR, 16S rRNA and cpn60 gene amplicon sequencing and shotgun metagenomic sequencing to compare pre- and post-treatment biosolids from two Canadian wastewater treatment plants (WWTPs). Our results show that an anaerobic digestion WWTP was unsuccessful at reducing the live indicator organism load (coliforms, generic E. coli and Salmonella) below acceptable regulatory criteria, while biosolids from a dewatering/pelletization WWTP met these criteria. DNA from other pathogens was detected by the molecular methods, but these species were considered less abundant. Clostridium DNA increased significantly following anaerobic digestion treatments. In addition to pathogen DNA, genes related to virulence and antibiotic resistance were identified in treated biosolids. Shotgun metagenomics revealed the widest range of pathogen DNA and, among the approaches used here, was the only approach that could access functional gene information in treated biosolids. Overall, our results highlight the potential usefulness of amplicon sequencing and shotgun metagenomics as complementary screening methods that could be used in parallel with culture-based methods, although more detailed comparisons across a wider range of sites would be needed.
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Patel CB, Shanker R, Gupta VK, Upadhyay RS. Q-PCR Based Culture-Independent Enumeration and Detection of Enterobacter: An Emerging Environmental Human Pathogen in Riverine Systems and Potable Water. Front Microbiol 2016; 7:172. [PMID: 26925044 PMCID: PMC4756282 DOI: 10.3389/fmicb.2016.00172] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2015] [Accepted: 02/01/2016] [Indexed: 11/13/2022] Open
Abstract
The availability of safe and pristine water is a global challenge when large numbers of natural and anthropogenic water resources are being depleted with faster rate. The remaining water resources are severely contaminated with various kinds of contaminants including microorganisms. Enterobacter is one of the fecal coliform bacteria of family Enterobacteriaceae. Enterobacter was earlier used as an indicator bacterium along with other fecal Coliforms namely Escherichia coli, Citrobacter, and Klebsiella, but it is now known to cause various diseases in human beings. In this study, we have collected 55 samples from potable water and riverine system and proved their presence using their conserved sequences of 16S rRNA and 23S rRNA genes with the help of SYBR green real-time PCR, which showed very high specificity for the detection of Enterobacter. The Enterobacter counts in potable water were found to 1290 ± 32.89 to 1460 ± 39.42 cfu/100 ml. The Enterobacter levels in surface water were 1.76 × 10(4) ± 492, 1.33 × 10(4) ± 334, 1.15 × 10(4) ± 308, 2.56 × 10(4) ± 802, 2.89 × 10(4) ± 962, 8.16 × 10(4) ± 3443 cfu/100 ml; the levels of Enterobacter contamination associated with hydrophytes were 4.80 × 10(4) ± 1804, 3.48 × 10(4) ± 856, 8.50 × 10(4) ± 2074, 8.09 × 10(4) ± 1724, 6.30 × 10(4) ± 1738, 3.68 × 10(4) ± 949 cfu/10 g and the Enterobacter counts in sediments of the river, were 2.36 × 10(4) ± 703, 1.98 × 10(4) ± 530, 9.92 × 10(4) ± 3839, 6.80 × 10(4) ± 2230, 8.76 × 10(4) ± 3066 and 2.34 × 10(4) ± 732 cfu/10 g at the sampling Site #1, Site #2, Site #3, Site #4, Site #5, and Site #6, respectively. The assay could be used for the regular monitoring of potable water and other water reservoirs to check waterborne outbreaks.
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Affiliation(s)
- Chandra B. Patel
- Environmental Toxicology Group, CSIR-Indian Institute of Toxicology ResearchLucknow, India
- Department of Botany, Banaras Hindu UniversityVaranasi, India
| | - Rishi Shanker
- Institute of Life Sciences, School of Life Science and Technology, Ahmedabad UniversityAhmedabad, India
| | - Vijai K. Gupta
- Molecular Glycobiotechnology Group, Discipline of Biochemistry, School of Natural Sciences, National University of Ireland GalwayGalway, Ireland
| | - Ram S. Upadhyay
- Department of Botany, Banaras Hindu UniversityVaranasi, India
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Winters AD, Marsh TL, Brenden TO, Faisal M. Analysis of bacterial communities associated with the benthic amphipod Diporeia in the Laurentian Great Lakes Basin. Can J Microbiol 2015; 61:72-81. [PMID: 25494536 DOI: 10.1139/cjm-2014-0434] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Abstract
Bacterial communities play important roles in the biological functioning of crustaceans, yet little is known about their diversity, structure, and dynamics. This study was conducted to investigate the bacterial communities associated with the benthic amphipod Diporeia, an important component in the Great Lakes foodweb that has been declining over the past 3 decades. In this study, the combination of 16S rRNA gene sequencing and terminal restriction fragment length polymorphism revealed a total of 175 and 138 terminal restriction fragments (T-RFs) in Diporeia samples following treatment with the endonucleases HhaI and MspI, respectively. Relatively abundant and prevalent T-RFs were affiliated with the genera Flavobacterium and Pseudomonas and the class Betaproteobacteria. T-RFs affiliated with the order Rickettsiales were also detected. A significant difference in T-RF presence and abundance (P = 0.035) was detected among profiles generated for Diporeia collected from 4 sites in Lake Michigan. Comparison of profiles generated for Diporeia samples collected in 2 years from lakes Superior and Michigan showed a significant change in diversity for Lake Superior Diporeia but not Lake Michigan Diporeia. Profiles from one Lake Michigan site contained multiple unique T-RFs compared with other Lake Michigan Diporeia profiles, most notably one that represents the genus Methylotenera. This study generated the most extensive list of bacteria associated with Diporeia and sheds useful insights on the microbiome of Great Lakes Diporeia that may help to reveal potential causes of the decline of Diporeia populations.
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Affiliation(s)
- Andrew D Winters
- a Department of Fisheries and Wildlife, Michigan State University, East Lansing, MI 48824, USA
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Chandrasekaran R, Hamilton MJ, Wang P, Staley C, Matteson S, Birr A, Sadowsky MJ. Geographic isolation of Escherichia coli genotypes in sediments and water of the Seven Mile Creek - A constructed riverine watershed. THE SCIENCE OF THE TOTAL ENVIRONMENT 2015; 538:78-85. [PMID: 26298250 DOI: 10.1016/j.scitotenv.2015.08.013] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/24/2015] [Revised: 08/03/2015] [Accepted: 08/04/2015] [Indexed: 06/04/2023]
Abstract
Escherichia coli is used to indicate fecal contamination in freshwater systems and is an indicator of the potential presence of human pathogens. However, naturalized E. coli strains that persist and grow in the environment confound the use of this bacterium as a fecal indicator. Here we examined the spatial and temporal distribution of E. coli in water and sediments of the Seven Mile Creek (SMC), a constructed, ephemeral watershed. E. coli concentrations showed variation by site and date, likely due to changes in temperature and rainfall. Horizontal fluorophore enhanced rep-PCR (HFERP) DNA fingerprint analyses indicated that E. coli populations were very diverse and consisted of transient and naturalized strains, which were especially prevalent in sediment. E. coli fingerprints from water and sediment collected in the same year clustered together with significant overlap, indicating exchange of strains between matrices. Isolates obtained during periods of flow, but not during non-flow conditions, clustered together regardless of sample site, indicating that transport between sites occurred. Naturalized E. coli strains were found in the SMC and strains become geographically isolated and distinct during non-flow conditions. Isolates collected during late spring to fall clustered together at each site, suggesting that temperature and growth of naturalized strains are likely factors affecting population dynamics. Results of this study show that newly introduced and naturalized E. coli strains are present in the SMC. Results of this study highlight an important concern for resource managers using this species for water quality monitoring.
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Affiliation(s)
| | - Matthew J Hamilton
- BioTechnology Institute, University of Minnesota, St. Paul, MN 55108, USA; Department of Soil, Water, and Climate, University of Minnesota, St. Paul, MN 55108, USA
| | - Ping Wang
- BioTechnology Institute, University of Minnesota, St. Paul, MN 55108, USA
| | - Christopher Staley
- BioTechnology Institute, University of Minnesota, St. Paul, MN 55108, USA
| | - Scott Matteson
- Water Resource Center, Minnesota State University, Mankato, MN 55108, USA.
| | - Adam Birr
- Minnesota Department of Agriculture, St. Paul, MN 55108, USA.
| | - Michael J Sadowsky
- BioTechnology Institute, University of Minnesota, St. Paul, MN 55108, USA; Department of Soil, Water, and Climate, University of Minnesota, St. Paul, MN 55108, USA.
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40
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Quilliam RS, Kinzelman J, Brunner J, Oliver DM. Resolving conflicts in public health protection and ecosystem service provision at designated bathing waters. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2015; 161:237-242. [PMID: 26188988 DOI: 10.1016/j.jenvman.2015.07.017] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/11/2015] [Revised: 07/02/2015] [Accepted: 07/06/2015] [Indexed: 05/11/2023]
Abstract
Understanding and quantifying the trade-off between the requirement for clean safe bathing water and beaches and their wider ecosystem services is central to the aims of the European Union (EU) Marine Strategy Framework Directive (MSFD), and vital for the sustainability and economic viability of designated bathing waters. Uncertainty surrounding the impacts of ensuing bathing water policy transitions, e.g. the EU revised Bathing Waters Directive (rBWD), puts new urgency on our need to understand the importance of natural beach assets for human recreation, wildlife habitat and for protection from flooding and erosion. However, managing coastal zones solely in terms of public health could have potentially negative consequences on a range of other social and cultural ecosystem services, e.g. recreation. Improving our knowledge of how bathing waters, surrounding beach environments and local economies might respond to shifts in management decisions is critical in order to inform reliable decision-making, and to evaluate future implications for human health. In this paper we explore the conflicts and trade-offs that emerge at public beach environments, and propose the development of an evaluative framework of viable alternatives in environmental management whereby bathing waters are managed for their greatest utility, driven by identifying the optimal ecosystem service provision at any particular site.
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Affiliation(s)
- Richard S Quilliam
- Biological & Environmental Science, University of Stirling, Stirling FK9 4LA, UK.
| | - Julie Kinzelman
- City of Racine, Health Department, 730 Washington Avenue, Racine, WI 53403, USA
| | - Joel Brunner
- City of Racine, Health Department, 730 Washington Avenue, Racine, WI 53403, USA
| | - David M Oliver
- Biological & Environmental Science, University of Stirling, Stirling FK9 4LA, UK
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41
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Quero GM, Fasolato L, Vignaroli C, Luna GM. Understanding the association of Escherichia coli with diverse macroalgae in the lagoon of Venice. Sci Rep 2015; 5:10969. [PMID: 26043415 PMCID: PMC4455311 DOI: 10.1038/srep10969] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2015] [Accepted: 05/12/2015] [Indexed: 12/15/2022] Open
Abstract
Recent studies provided evidence that the macroalga Cladopohora in lakes hosts associated Escherichia coli, with consequences on the environmental and human health. We expanded these investigations to other macroalgae (Ulva spp., Sargassum muticum and Undaria pinnatifida) widespread in the lagoon of Venice (Italy). Attached E. coli were abundant, accounting up to 3,250 CFU gram−1 of alga. Macroalgal-associated isolates belonged to all E. coli phylogroups, including pathogenic ones, and to Escherichia cryptic clades. Attached E. coli showed potential to grow even at in situ temperature on macroalgal extracts as only source of carbon and nutrients, and ability to produce biofilm in vitro. The genotypic diversity of the attached isolates was high, with significant differences between algae and the overlying water. Our evidences suggest that attached populations consist of both resident and transient strains, likely resulting from the heterogeneous input of fecal bacteria from the city. We report that cosmopolitan and invasive macroalgae may serve as source of E. coli, including pathogenic genotypes, and that this habitat can potentially support their growth. Considering the global diffusion of the macroalgae here studied, this phenomenon is likely occurring in other coastal cities worldwide and deserves further investigations from either the sanitary and ecological perspectives.
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Affiliation(s)
- Grazia M Quero
- Institute of Marine Sciences (CNR - ISMAR), National Research Council, Venezia, Italy
| | - Luca Fasolato
- Department of Comparative Biomedicine and Food Science, University of Padova, Italy
| | - Carla Vignaroli
- Department of Life and Environmental Sciences, Polytechnic University of Marche, Ancona, Italy
| | - Gian Marco Luna
- Institute of Marine Sciences (CNR - ISMAR), National Research Council, Venezia, Italy
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42
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Spatial, Temporal, and Matrix Variability of Clostridium botulinum Type E Toxin Gene Distribution at Great Lakes Beaches. Appl Environ Microbiol 2015; 81:4306-15. [PMID: 25888178 DOI: 10.1128/aem.00098-15] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2015] [Accepted: 04/12/2015] [Indexed: 11/20/2022] Open
Abstract
Clostridium botulinum type E toxin is responsible for extensive mortality of birds and fish in the Great Lakes. The C. botulinum bontE gene that produces the type E toxin was amplified with quantitative PCR from 150 sloughed algal samples (primarily Cladophora species) collected during summer 2012 from 10 Great Lakes beaches in five states; concurrently, 74 sediment and 37 water samples from four sites were also analyzed. The bontE gene concentration in algae was significantly higher than in water and sediment (P < 0.05), suggesting that algal mats provide a better microenvironment for C. botulinum. The bontE gene was detected most frequently in algae at Jeorse Park and Portage Lake Front beaches (Lake Michigan) and Bay City State Recreation Area beach on Saginaw Bay (Lake Huron), where 77, 100, and 83% of these algal samples contained the bontE gene, respectively. The highest concentration of bontE was detected at Bay City (1.98 × 10(5) gene copies/ml of algae or 5.21 × 10(6) g [dry weight]). This study revealed that the bontE gene is abundant in the Great Lakes but that it has spatial, temporal, and matrix variability. Further, embayed beaches, low wave height, low wind velocity, and greater average water temperature enhance the bontE occurrence.
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43
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Lan Chun C, Kahn CI, Borchert AJ, Byappanahalli MN, Whitman RL, Peller J, Pier C, Lin G, Johnson EA, Sadowsky MJ. Prevalence of toxin-producing Clostridium botulinum associated with the macroalga Cladophora in three Great Lakes: growth and management. THE SCIENCE OF THE TOTAL ENVIRONMENT 2015; 511:523-529. [PMID: 25577739 DOI: 10.1016/j.scitotenv.2014.12.080] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/03/2014] [Revised: 12/19/2014] [Accepted: 12/22/2014] [Indexed: 06/04/2023]
Abstract
The reemergence of avian botulism caused by Clostridium botulinum type E has been observed across the Great Lakes in recent years. Evidence suggests an association between the nuisance algae, Cladophora spp., and C. botulinum in nearshore areas of the Great Lakes. However, the nature of the association between Cladophora and C. botulinum is not fully understood due, in part, to the complex food web interactions in this disease etiology. In this study, we extensively evaluated their association by quantitatively examining population size and serotypes of C. botulinum in algal mats collected from wide geographic areas in lakes Michigan, Ontario, and Erie in 2011-2012 and comparing them with frequencies in other matrices such as sand and water. A high prevalence (96%) of C. botulinum type E was observed in Cladophora mats collected from shorelines of the Great Lakes in 2012. Among the algae samples containing detectable C. botulinum, the population size of C. Botulinum type E was 10(0)-10(4) MPN/g dried algae, which was much greater (up to 10(3) fold) than that found in sand or the water column, indicating that Cladophora mats are sources of this pathogen. Mouse toxinantitoxin bioassays confirmed that the putative C. botulinum belonged to the type E serotype. Steam treatment was effective in reducing or eliminating C. botulinum type E viable cells in Cladophora mats, thereby breaking the potential transmission route of toxin up to the food chain. Consequently, our data suggest that steam treatment incorporated with a beach cleaning machine may be an effective treatment of Cladophora-borne C. botulinum and may reduce bird mortality and human health risks.
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Affiliation(s)
- Chan Lan Chun
- BioTechnology Institute, University of Minnesota, St. Paul, MN 55108, United States
| | - Chase I Kahn
- BioTechnology Institute, University of Minnesota, St. Paul, MN 55108, United States
| | - Andrew J Borchert
- BioTechnology Institute, University of Minnesota, St. Paul, MN 55108, United States
| | - Muruleedhara N Byappanahalli
- Lake Michigan Ecological Research Station, Great Lakes Science Center, U.S. Geological Survey, Porter, IN 46304, United States
| | - Richard L Whitman
- Lake Michigan Ecological Research Station, Great Lakes Science Center, U.S. Geological Survey, Porter, IN 46304, United States
| | - Julie Peller
- Department of Chemistry, Physics and Astronomy, Indiana University Northwest, Gary, IN 46408, United States
| | - Christina Pier
- Department of Bacteriology, University of Wisconsin, Madison, WI 53706, United States
| | - Guangyun Lin
- Department of Bacteriology, University of Wisconsin, Madison, WI 53706, United States
| | - Eric A Johnson
- Department of Bacteriology, University of Wisconsin, Madison, WI 53706, United States
| | - Michael J Sadowsky
- BioTechnology Institute, University of Minnesota, St. Paul, MN 55108, United States; Department of Soil, Water, and Climate, University of Minnesota, St. Paul, MN 55108, United States.
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44
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Quilliam RS, van Niekerk MA, Chadwick DR, Cross P, Hanley N, Jones DL, Vinten AJA, Willby N, Oliver DM. Can macrophyte harvesting from eutrophic water close the loop on nutrient loss from agricultural land? JOURNAL OF ENVIRONMENTAL MANAGEMENT 2015; 152:210-217. [PMID: 25669857 DOI: 10.1016/j.jenvman.2015.01.046] [Citation(s) in RCA: 40] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/06/2014] [Revised: 01/22/2015] [Accepted: 01/30/2015] [Indexed: 06/04/2023]
Abstract
Eutrophication is a major water pollution issue and can lead to excessive growth of aquatic plant biomass (APB). However, the assimilation of nutrients into APB provides a significant target for their recovery and reuse, and harvesting problematic APB in impacted freshwater bodies offers a complementary approach to aquatic restoration, which could potentially deliver multiple wider ecosystem benefits. This critical review provides an assessment of opportunities and risks linked to nutrient recovery from agriculturally impacted water-bodies through the harvesting of APB for recycling and reuse as fertilisers and soil amendments. By evaluating the economic, social, environmental and health-related dimensions of this resource recovery from 'waste' process we propose a research agenda for closing the loop on nutrient transfer from land to water. We identify that environmental benefits are rarely, if ever, prioritised as essential criteria for the exploitation of resources from waste and yet this is key for addressing the current imbalance that sees environmental managers routinely undervaluing the wider environmental benefits that may accrue beyond resource recovery. The approach we advocate for the recycling of 'waste' APB nutrients is to couple the remediation of eutrophic waters with the sustainable production of feed and fertiliser, whilst providing multiple downstream benefits and minimising environmental trade-offs. This integrated 'ecosystem services approach' has the potential to holistically close the loop on agricultural nutrient loss, and thus sustainably recover finite resources such as phosphorus from waste.
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Affiliation(s)
- Richard S Quilliam
- Biological & Environmental Sciences, School of Natural Sciences, University of Stirling, Stirling, UK.
| | - Melanie A van Niekerk
- Biological & Environmental Sciences, School of Natural Sciences, University of Stirling, Stirling, UK
| | - David R Chadwick
- School of Environment, Natural Resources and Geography, Bangor University, Bangor, UK
| | - Paul Cross
- School of Environment, Natural Resources and Geography, Bangor University, Bangor, UK
| | - Nick Hanley
- Department of Geography & Sustainable Development, University of St Andrews, St Andrews, UK
| | - Davey L Jones
- School of Environment, Natural Resources and Geography, Bangor University, Bangor, UK
| | | | - Nigel Willby
- Biological & Environmental Sciences, School of Natural Sciences, University of Stirling, Stirling, UK
| | - David M Oliver
- Biological & Environmental Sciences, School of Natural Sciences, University of Stirling, Stirling, UK
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45
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Buckalew DW, Tuono AJ, Simmons AK, Lankford TW, Smith DH. Homogeneous Distribution of <i>Escherichia coli</i> Measured within the Vertical Water Column of Small, Freshwater Streams. ACTA ACUST UNITED AC 2015. [DOI: 10.4236/jwarp.2015.75033] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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46
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Oster RJ, Wijesinghe RU, Haack SK, Fogarty LR, Tucker TR, Riley SC. Bacterial pathogen gene abundance and relation to recreational water quality at seven Great Lakes beaches. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2014; 48:14148-14157. [PMID: 25423586 DOI: 10.1021/es5038657] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Quantitative assessment of bacterial pathogens, their geographic variability, and distribution in various matrices at Great Lakes beaches are limited. Quantitative PCR (qPCR) was used to test for genes from E. coli O157:H7 (eaeO157), shiga-toxin producing E. coli (stx2), Campylobacter jejuni (mapA), Shigella spp. (ipaH), and a Salmonella enterica-specific (SE) DNA sequence at seven Great Lakes beaches, in algae, water, and sediment. Overall, detection frequencies were mapA>stx2>ipaH>SE>eaeO157. Results were highly variable among beaches and matrices; some correlations with environmental conditions were observed for mapA, stx2, and ipaH detections. Beach seasonal mean mapA abundance in water was correlated with beach seasonal mean log10 E. coli concentration. At one beach, stx2 gene abundance was positively correlated with concurrent daily E. coli concentrations. Concentration distributions for stx2, ipaH, and mapA within algae, sediment, and water were statistically different (Non-Detect and Data Analysis in R). Assuming 10, 50, or 100% of gene copies represented viable and presumably infective cells, a quantitative microbial risk assessment tool developed by Michigan State University indicated a moderate probability of illness for Campylobacter jejuni at the study beaches, especially where recreational water quality criteria were exceeded. Pathogen gene quantification may be useful for beach water quality management.
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Affiliation(s)
- Ryan J Oster
- U.S. Geological Survey, Michigan Water Science Center , Lansing, Michigan 48911, United States
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47
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Quilliam RS, Jamieson J, Oliver DM. Seaweeds and plastic debris can influence the survival of faecal indicator organisms in beach environments. MARINE POLLUTION BULLETIN 2014; 84:201-7. [PMID: 24878304 DOI: 10.1016/j.marpolbul.2014.05.011] [Citation(s) in RCA: 43] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/09/2014] [Revised: 04/24/2014] [Accepted: 05/03/2014] [Indexed: 06/03/2023]
Abstract
The revised Bathing Water Directive (rBWD) introduces more stringent standards for microbial water quality and promotes more pro-active management of the beach environment through the production of a bathing water profile (BWP). The aim of this study was to determine whether living seaweeds in the littoral zone are colonised by faecal indicator organisms (FIOs), and to quantify the survival dynamics of waterborne Escherichia coli in microcosms containing senescing seaweeds. Living seaweed (Fucus spiralis) was not associated with FIO colonisation, although could be providing a protected environment in the underlying sand. Senescing seaweeds enhanced waterborne E. coli survival compared to plastic debris, with the brown seaweed Laminaria saccharina facilitating greater E. coli persistence than either Chondrus crispus or Ulva lactuca. This has important implications for FIO survival on bathing beaches as the majority of beach-cast biomass is composed of brown seaweeds, which could support significant levels of FIOs.
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Affiliation(s)
- Richard S Quilliam
- Biological and Environmental Sciences, School of Natural Sciences, University of Stirling, Stirling FK9 4LA, UK.
| | - Julie Jamieson
- Biological and Environmental Sciences, School of Natural Sciences, University of Stirling, Stirling FK9 4LA, UK
| | - David M Oliver
- Biological and Environmental Sciences, School of Natural Sciences, University of Stirling, Stirling FK9 4LA, UK
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48
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Fadel A, Lemaire BJ, Atoui A, Vinçon‐Leite B, Amacha N, Slim K, Tassin B. First assessment of the ecological status of
K
araoun reservoir,
L
ebanon. ACTA ACUST UNITED AC 2014. [DOI: 10.1111/lre.12058] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Affiliation(s)
- Ali Fadel
- LEESU (UMR MA‐102) Université Paris‐Est Ecole des Ponts ParisTech AgroParisTech Marne‐la‐Vallée France
- Laboratory of Microorganisms and Food Irradiation Lebanese Atomic Energy Commission‐ CNRS Beirut Lebanon
| | - Bruno J. Lemaire
- LEESU (UMR MA‐102) Université Paris‐Est Ecole des Ponts ParisTech AgroParisTech Marne‐la‐Vallée France
- AgroParisTech Paris France
| | - Ali Atoui
- Laboratory of Microorganisms and Food Irradiation Lebanese Atomic Energy Commission‐ CNRS Beirut Lebanon
| | - Brigitte Vinçon‐Leite
- LEESU (UMR MA‐102) Université Paris‐Est Ecole des Ponts ParisTech AgroParisTech Marne‐la‐Vallée France
| | - Nabil Amacha
- Faculty of Science Lebanese University Beirut Lebanon
- Litani River Authority Beirut Lebanon
| | - Kamal Slim
- Laboratory of Microorganisms and Food Irradiation Lebanese Atomic Energy Commission‐ CNRS Beirut Lebanon
- Faculty of Science Lebanese University Beirut Lebanon
| | - Bruno Tassin
- LEESU (UMR MA‐102) Université Paris‐Est Ecole des Ponts ParisTech AgroParisTech Marne‐la‐Vallée France
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49
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Stevenson J. Ecological assessments with algae: a review and synthesis. JOURNAL OF PHYCOLOGY 2014; 50:437-61. [PMID: 26988318 DOI: 10.1111/jpy.12189] [Citation(s) in RCA: 81] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/19/2013] [Accepted: 03/20/2014] [Indexed: 05/24/2023]
Abstract
Algae have been used for a century in environmental assessments of water bodies and are now used in countries around the world. This review synthesizes recent advances in the field around a framework for environmental assessment and management that can guide design of assessments, applications of phycology in assessments, and refinements of those applications to better support management decisions. Algae are critical parts of aquatic ecosystems that power food webs and biogeochemical cycling. Algae are also major sources of problems that threaten many ecosystems goods and services when abundances of nuisance and toxic taxa are high. Thus, algae can be used to indicate ecosystem goods and services, which complements how algal indicators are also used to assess levels of contaminants and habitat alterations (stressors). Understanding environmental managers' use of algal ecology, taxonomy, and physiology can guide our research and improve its application. Environmental assessments involve characterizing ecological condition and diagnosing causes and threats to ecosystems goods and services. Recent advances in characterizing condition include site-specific models that account for natural variability among habitats to better estimate effects of humans. Relationships between algal assemblages and stressors caused by humans help diagnose stressors and establish targets for protection and restoration. Many algal responses to stressors have thresholds that are particularly important for developing stakeholder consensus for stressor management targets. Future research on the regional-scale resilience of algal assemblages, the ecosystem goods and services they provide, and methods for monitoring and forecasting change will improve water resource management.
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Affiliation(s)
- Jan Stevenson
- Department of Zoology and Center for Water Sciences, Michigan State University, East Lansing, Michigan, 48824, USA
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50
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Ishii S, Nakamura T, Ozawa S, Kobayashi A, Sano D, Okabe S. Water quality monitoring and risk assessment by simultaneous multipathogen quantification. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2014; 48:4744-9. [PMID: 24702133 DOI: 10.1021/es500578s] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/14/2023]
Abstract
Water quality monitoring and microbial risk assessment are important to ensure safe water for drinking, recreational, and agricultural purposes. In this study, we applied a microfluidic quantitative PCR (MFQPCR) approach to simultaneously quantify multiple waterborne pathogens in a natural freshwater lake in Hokkaido, Japan, from April to November, 2012. Tens of thousands of geese stopped over at this lake during their migration in spring and fall. Because lake water is used for irrigation of the surrounding agricultural area, we assessed infection risks through irrigation water usage based on pathogen concentrations directly measured by MFQPCR. We detected various pathogens in the lake water, particularly during the bird migration seasons, suggesting that migratory birds were the main source of the pathogens. However, neither counts of geese nor fecal indicator bacteria were good predictors of pathogen concentrations. On the basis of quantitative microbial risk assessment, concentrations of Campylobacter jejuni and Shigella spp. in water samples were above the concentrations that can potentially cause 10(-4) infections per person per year when water is used to grow fresh vegetables. These results suggest that direct and simultaneous multipathogen quantification can provide more reliable and comprehensive information for risk assessment than the current fecal indicator-based approach.
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Affiliation(s)
- Satoshi Ishii
- Division of Environmental Engineering, Faculty of Engineering, Hokkaido University , Sapporo 060-8628, Japan
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