Semiquantitative Detection of Hydrogen-Associated or Hydrogen-Free Electron Transfer within Methanogenic Biofilm of Microbial Electrosynthesis

The Effect of Bismuth and Tin on Methane and Acetate Production in a Microbial Electrosynthesis Cell Fed with Carbon Dioxide

This study investigates the impacts of bismuth and tin on the production of CH4 and volatile fatty acids in a microbial electrosynthesis cell with a continuous CO2 supply. First, the impact of several transition metal ions (Ni2+, Fe2+, Cu2+, Sn2+, Mn2+, MoO42-, and Bi3+) on hydrogenotrophic and acetoclastic methanogenic microbial activity was evaluated in a series of batch bottle tests incubated with anaerobic sludge and a pre-defined concentration of dissolved transition metals. While Cu is considered a promising catalyst for the electrocatalytic conversion of CO2 to short chain fatty acids such as acetate, its presence as a Cu2+ ion was demonstrated to significantly inhibit the microbial production of CH4 and acetate. At the same time, CH4 production increased in the presence of Bi3+ (0.1 g L-1) and remained unchanged at the same concentration of Sn2+. Since Sn is of interest due to its catalytic properties in the electrochemical CO2 conversion, Bi and Sn were added to the cathode compartment of a laboratory-scale microbial electrosynthesis cell (MESC) to achieve an initial concentration of 0.1 g L-1. While an initial increase in CH4 (and acetate for Sn2+) production was observed after the first injection of the metal ions, after the second injection, CH4 production declined. Acetate accumulation was indicative of the reduced activity of acetoclastic methanogens, likely due to the high partial pressure of H2. The modification of a carbon-felt electrode by the electrodeposition of Sn metal on its surface prior to cathode inoculation with anaerobic sludge showed a doubling of CH4 production in the MESC and a lower concentration of acetate, while the electrodeposition of Bi resulted in a decreased CH4 production.

Microbiologically influenced corrosion-more than just microorganisms

Microbiologically influenced corrosion (MIC) is a phenomenon of increasing concern that affects various materials and sectors of society. MIC describes the effects, often negative, that a material can experience due to the presence of microorganisms. Unfortunately, although several research groups and industrial actors worldwide have already addressed MIC, discussions are fragmented, while information sharing and willingness to reach out to other disciplines are limited. A truly interdisciplinary approach, which would be logical for this material/biology/chemistry-related challenge, is rarely taken. In this review, we highlight critical non-biological aspects of MIC that can sometimes be overlooked by microbiologists working on MIC but are highly relevant for an overall understanding of this phenomenon. Here, we identify gaps, methods, and approaches to help solve MIC-related challenges, with an emphasis on the MIC of metals. We also discuss the application of existing tools and approaches for managing MIC and propose ideas to promote an improved understanding of MIC. Furthermore, we highlight areas where the insights and expertise of microbiologists are needed to help progress this field.

Review: Reducing enteric methane emissions improves energy metabolism in livestock: is the tenet right?

The production of enteric methane in the gastrointestinal tract of livestock is considered as an energy loss in the equations for estimating energy metabolism in feeding systems. Therefore, the spared energy resulting from specific inhibition of methane emissions should be re-equilibrated with other factors of the equation. And, it is commonly assumed that net energy from feeds increases, thus benefitting production functions, particularly in ruminants due to the important production of methane in the rumen. Notwithstanding, we confirm in this work that inhibition of emissions in ruminants does not transpose into consistent improvements in production. Theoretical calculations of energy flows using experimental data show that the expected improvement in net energy for production is small and difficult to detect under the prevailing, moderate inhibition of methane production (≈25%) obtained using feed additives inhibiting methanogenesis. Importantly, the calculation of energy partitioning using canonical models might not be adequate when methanogenesis is inhibited. There is a lack of information on various parameters that play a role in energy partitioning and that may be affected under provoked abatement of methane. The formula used to calculate heat production based on respiratory exchanges should be validated when methanogenesis is inhibited. Also, a better understanding is needed of the effects of inhibition on fermentation products, fermentation heat, and microbial biomass. Inhibition induces the accumulation of H2, the main substrate used to produce methane, that has no energetic value for the host, and it is not extensively used by the majority of rumen microbes. Currently, the fate of this excess of H2 and its consequences on the microbiota and the host are not well known. All this additional information will provide a better account of energy transactions in ruminants when enteric methanogenesis is inhibited. Based on the available information, it is concluded that the claim that enteric methane inhibition will translate into more feed-efficient animals is not warranted.

Prokaryotic community interchange between distinct microhabitats causes community pressure on anammox biofilm development

Biofilms are an efficient way to underpin the biological process of wastewater treatment. However, little is known about the driving forces of biofilm formation and development in industrial settings. Long-term observation of anammox biofilms indicated the interplay between different microhabitats (biofilm, aggregate, plankton) was important in sustaining biofilm formation. SourceTracker analysis showed that 88.77 ± 2.26% of initial biofilm originated from the aggregate, however, independent evolution was led by anammox species in the later stage (182d and 245d). Noticeably, the source proportion of aggregate and plankton increased when temperature varied, suggesting an interchange of species between different microhabitats could be helpful to biofilm recovery. The microbial interaction pattern and community variation displayed similar trends, but the unknown source proportion of interaction was very high during the entire incubation (7-245d), thereby the same species may develop different relationships within the distinct microhabitats. The core phyla, Proteobacteria and Bacteroidota, accounted for ∼80% of interactions in all lifestyles, which is consistent with the fact that Bacteroidota played important role in the early stage of biofilm assembly. Although anammox species evolved few links with other OTUs, Candidatus Brocadiaceae still outcompeted the NS9 marine group to dominate the homogeneous selection process in the later stage (56-245d) of biofilm assembly, implying that the functional species may be decoupled from the core species in the microbial network. The conclusions will shed a light on the understanding of biofilm development in large-scale biosystems of wastewater treatment.

Microbial fingerprints of methanation in a hybrid electric-biological anaerobic digestion

Biomethane as a sustainable, alternative, and carbon-neutral renewable energy source to fossil fuels is highly needed to alleviate the global energy crisis and climate change. The conventional anaerobic digestion (AD) process for biomethane production from waste(water) streams has been widely employed while struggling with a low production rate, low biogas qualities, and frequent instability. The electric-biologically hybrid microbial electrochemical anaerobic digestion system (MEC-AD) prospects more stable and robust biomethane generation, which facilitates complex organic substrates degradation and mediates functional microbial populations by giving a small input power (commonly voltages < 1.0 V), mainly enhancing the communication between electroactive microorganisms and (electro)methanogens. Despite numerous bioreactor tests and studies that have been conducted, based on the MEC-AD systems, the integrated microbial fingerprints, and cooperation, accelerating substrate degradation, and biomethane production, have not been fully summarized. Herein, we present a comprehensive review of this novel developing biotechnology, beginning with the principles of MEC-AD. First, we examine the fundamentals, configurations, classifications, and influential factors of the whole system's performances (reactor types, applied voltages, temperatures, conductive materials, etc.,). Second, extracellular electron transfer either between diverse microbes or between microbes and electrodes for enhanced biomethane production are analyzed. Third, we further conclude (electro)methanogenesis, and microbial interactions, and construct ecological networks of microbial consortia in MEC-AD. Finally, future development and perspectives on MEC-AD for biomethane production are proposed.

Tracking the diversity and interaction of methanogens in the energy recovery process of a full-scale wastewater treatment plant

Methanogens have been significant for the achievement of carbon neutrality in wastewater treatment plants due to their crucial roles in the anaerobic digestion of sludge. Nevertheless, the phylogenetic diversity of methanogens and their versatile metabolism have been continuously investigated, the current scientific knowledge regarding these microbes appears inadequate and requires more evaluations. This study is considered an endeavor in which functional genes sequencing was used to reveal the diversity of methanogens in the sludge process of the wastewater treatment plant. The information obtained was substantially more than that employing 16s sequencing. The methanogenic microbial resources were appropriate to sustain a self-inoculated energy recovery with a potential ability to boost methane production. A constancy was observed in 16 S rRNA gene and mcrA gene sequencing results, where the bacterial or Methanosaeta concilii dominated community of DS (digest sludge) was distinct from the inoculum sources TS (total sludge), CTS (concentrated total sludge), and HTS (hydrolysis total sludge), indicating the independent development of DS. A quantitative cross-network was constructed by coupling the absolute quantify of 16 S rRNA and mcrA sequences. The Methanobacterium petrolearium actively interacted with bacteria in the DS community rather than the dominant species (Methanosaeta concilii). Moreover, the unclassified methanogens were identified to be significantly prevalent in all communities, suggesting that unknown methanogenic taxa might be imperative in accomplishing community functions. Collectively, the findings of this research study will shed light on the comprehensive knowledge of microbial communities, especially the methanogenic microbiota. This will further enhance the exploration of the phylogenetic diversity of methanogens and their corresponding impacts in energy recovery from wastewater treatment plants.

Electrotrophy: Other microbial species, iron, and electrodes as electron donors for microbial respirations

Electrotrophy, the growth of microbes on extracellular electron donors, drives important biogeochemical cycles and has practical applications. Studies of Fe(II)-based electrotrophy have provided foundational cytochrome-based mechanistic models for electron transport into cells. Direct electron uptake from other microbial species, Fe(0), or cathodes is of intense interest due to its potential roles in the production and anaerobic oxidation of methane, corrosion, and bioelectrochemical technologies. Other cells or Fe(0) can serve as the sole electron donor supporting the growth of several Geobacter and methanogen strains that are unable to use H₂ as an electron donor, providing strong evidence for electrotrophy. Additional evidence for electrotrophy in Geobacter strains and Methanosarcina acetivorans is a requirement for outer-surface c-type cytochromes. However, in most instances claims for electrotrophy in anaerobes are based on indirect inference and the possibility that H₂ is actually the electron donor supporting growth has not been rigorously excluded.

Sessile methanogens dominated cathodic biofilm: Distribution and network in physiological transitions

A mature cathodic biofilm plays the key role in biocathode electron transfer. The physiological transitions of it were of great interests as the sessile and dispersed (planktonic) work in a balance while it is still lack of understanding. In this study, an improved sampling method was used for detecting sessile, detached, and dispersed microorganisms. The results indicated a certain number of methanogens (82.6%) and its associated phyla (60%-90%) are immobilized as sessile biofilm. The Tax4Fun predicted a lower abundance of mobility associated genes and a significant enrichment (t-test, P = 0.003) of c-di-GMP in sessile biofilm. Overall, the microbial interaction and motility were predicted as two factors to affect the physiological transitions of cathodic biofilm. This finding could shed a light on the investigation of cathodic biofilm in a dynamic transition rather than a static community, playing a pivotal role in understanding the relation between specific property of biofilm.

Enhancing stability and resilience of electromethanogenesis system by acclimating biocathode with intermittent step-up voltage

Electromethanogenesis (EMG) system could efficiently convert CO₂ to CH₄ by using excess renewable electricity. However, the fluctuation and interruption of renewable electricity will adversely affect the biocathode and therefore the CH₄ production of the EMG system. In this work, a novel biocathode acclimation strategy with intermittent step-up voltage (ISUV) was proposed to improve the stability and resilience of the EMG system against the unstable input of renewable power. Compared with the intermittent application of constant voltage (IACV), the ISUV increased the rate of CH₄ production by 11.7 times with the improvement of the stability and resilience by 56% and 500%, respectively. Morphology and microflora structure analysis revealed that the biofilm enriched with ISUV exhibited a compact microflora structure with high-density cells and nanowires interconnected. This study provided a novel effective strategy to regulate the biofilm structure and enhance the performance of the EMG system.

Linkage of community composition and function over short response time in anaerobic digestion systems with food fermentation wastewater

We investigated the short-term dynamics of microbial composition and function in bioreactors with inocula collected from full-scale and laboratory-based anaerobic digestion (AD) systems. The Bray-Curtis dissimilarity of both inocula was approximately 10% of the predicted Kyoto Encyclopedia of Genes and Genomes pathway and 40% of the taxonomic composition and yet resulted in a similar performance in methane production, implying that the variation of community composition may be decoupled from performance. However, the significant correlation of volatile fatty acids with taxonomic variation suggested that the pathways of AD could be different because of the varying genus. The predicted function of the significantly varying genus was mostly related to fermentation, which strengthened the conclusion that most microbial variation occurred within the fermentative species and led to alternative routes to result in similar methane production in methanogenic bioreactors. This finding sheds some light on the understanding of AD community regulation, which depends on the aims to recover intermediates or methane.

Early response of methanogenic archaea to H2 as evaluated by metagenomics and metatranscriptomics

BACKGROUND

The molecular machinery of the complex microbiological cell factory of biomethane production is not fully understood. One of the process control elements is the regulatory role of hydrogen (H2). Reduction of carbon dioxide (CO2) by H2 is rate limiting factor in methanogenesis, but the community intends to keep H2 concentration low in order to maintain the redox balance of the overall system. H2 metabolism in methanogens becomes increasingly important in the Power-to-Gas renewable energy conversion and storage technologies.

RESULTS

The early response of the mixed mesophilic microbial community to H2 gas injection was investigated with the goal of uncovering the first responses of the microbial community in the CH4 formation and CO2 mitigation Power-to-Gas process. The overall microbial composition changes, following a 10 min excessive bubbling of H2 through the reactor, was investigated via metagenome and metatranscriptome sequencing. The overall composition and taxonomic abundance of the biogas producing anaerobic community did not change appreciably 2 hours after the H2 treatment, indicating that this time period was too short to display differences in the proliferation of the members of the microbial community. There was, however, a substantial increase in the expression of genes related to hydrogenotrophic methanogenesis of certain groups of Archaea. As an early response to H2 exposure the activity of the hydrogenotrophic methanogenesis in the genus Methanoculleus was upregulated but the hydrogenotrophic pathway in genus Methanosarcina was downregulated. The RT-qPCR data corroborated the metatranscriptomic RESULTS: H2 injection also altered the metabolism of a number of microbes belonging in the kingdom Bacteria. Many Bacteria possess the enzyme sets for the Wood-Ljungdahl pathway. These and the homoacetogens are partners for syntrophic community interactions between the distinct kingdoms of Archaea and Bacteria.

CONCLUSIONS

External H2 regulates the functional activity of certain Bacteria and Archaea. The syntrophic cross-kingdom interactions in H2 metabolism are important for the efficient operation of the Power-to-Gas process. Therefore, mixed communities are recommended for the large scale Power-to-Gas process rather than single hydrogenotrophic methanogen strains. Fast and reproducible response from the microbial community can be exploited in turn-off and turn-on of the Power-to-Gas microbial cell factories.

Putative Extracellular Electron Transfer in Methanogenic Archaea

It has been suggested that a few methanogens are capable of extracellular electron transfers. For instance, Methanosarcina barkeri can directly capture electrons from the coexisting microbial cells of other species. Methanothrix harundinacea and Methanosarcina horonobensis retrieve electrons from Geobacter metallireducens via direct interspecies electron transfer (DIET). Recently, Methanobacterium, designated strain YSL, has been found to grow via DIET in the co-culture with Geobacter metallireducens. Methanosarcina acetivorans can perform anaerobic methane oxidation and respiratory growth relying on Fe(III) reduction through the extracellular electron transfer. Methanosarcina mazei is capable of electromethanogenesis under the conditions where electron-transfer mediators like H₂ or formate are limited. The membrane-bound multiheme c-type cytochromes (MHC) and electrically-conductive cellular appendages have been assumed to mediate the extracellular electron transfer in bacteria like Geobacter and Shewanella species. These molecules or structures are rare but have been recently identified in a few methanogens. Here, we review the current state of knowledge for the putative extracellular electron transfers in methanogens and highlight the opportunities and challenges for future research.

An external magnetic field moderating Cr(VI) stress for simultaneous enhanced acetate production and Cr(VI) removal in microbial electrosynthesis system

A stressful heavy metal circumstance disfavors production of acetate from bicarbonate reduction in the biocathode of microbial electrosynthesis system (MES) with simultaneous function of heavy metal removal/recovery. It is of great interest to explore effective approaches to moderate the heavy metal stress with achievement of simultaneous enhanced acetate production and heavy metal removal in MES. Herein, a magnetic field strength of 100 mT was successfully employed to moderate Cr(VI) stress, achieving simultaneous production of acetate at a rate of 1.48 ± 0.01 mg/L/h and Cr(VI) removal at a rate of 1.67-2.42 mg/L/h in the Serratia marcescens Q1 catalyzed cathode of MES under periodical addition of bicarbonate and Cr(VI), 1.35-fold (acetate production) and 1.34-1.46 times (Cr(VI) removal) of those in the controls in the absence of magnetic field. This simultaneous efficient acetate production and Cr(VI) removal was regulated by the magnetic field and the stressful Cr(VI), which induced the S. marcescens to physiologically release additive amounts of extracellular polymeric substances with a compositional diversity and containing the electrochemically active c-type cytochromes to facilitate extracellular electron transfer. This study confirmed the importance of magnetic field in developing the S. marcescens catalytic activity for moderating Cr(VI) stress, and thus provided a feasible approach for simultaneous efficient acetate production and Cr(VI) removal/recovery in MES, from waters contaminated with Cr(VI).

A novel electrochemical oxidation-methanogenesis system for simultaneously degrading antibiotics and reducing CO2 to CH4 with low energy costs

A novel electrochemical oxidation-methanogenesis (EO-M) system was proposed for the first time to simultaneously achieve antibiotic degradation and a bioelectrochemical conversion of CO₂ to CH₄ with low energy costs. A dual-chamber system was installed with an antimony-doped tin oxide anode (Ti/SnO₂-Sb) for the electrocatalytic generation of hydroxyl radicals to degrade ciprofloxacin (CIP), and a CO₂-reducing methanogenic biocathode was enriched based on a three-dimensional (3D) graphitized granular activated carbon (GGAC) for microbial electromethanogenesis. The anode achieved removal efficiencies as high as 99.99% and 90.53% for CIP (14 mL, 50 mg L^-1) and the chemical oxygen demand (COD, 89 mg L^-1), respectively. The biocathode was rapidly enriched within 15 days and exhibited a methane production rate that stabilized at 15.12 ± 1.82 m³ m^-3 d^-1; additionally, the cathodic coulombic efficiency reached 71.76 ± 17.24%. The energy consumption of CIP degradation was reduced by 3.03 Wh L^-1 compared to that of a single electrochemical oxidation system due to the lower cathodic overpotential of CO₂ bioelectrochemical reduction in the EO-M system. A detailed analysis of the biofilm evolution in the 3D biocathode during the start-up process demonstrated that the enhanced absorption of extracellular polymeric substances by the GGAC cathode accelerated the enrichment of methanogens and induced the formation of methanogens with a large number of flagella. An analysis of the microbial community showed that a high relative abundance of Methanobacterium movens could promote a flagella-mediated direct electron transfer of the biocathode, eventually reducing the cathodic overpotential and energy costs of the EO-M system.

Intermittent electro field regulated mutualistic interspecies electron transfer away from the electrodes for bioenergy recovery from wastewater

Lately, extracellular electron transfer (EET) is widely disclosed on the surface of the bioelectrodes, and conductive (bio)carriers involved in anaerobic biodegradation/biosynthesis. By electrostimulation, microbial consortia colonize the electrodes and accelerate substrate (waste/wastewater) metabolization on the bioanode or biosynthesize value-added products (methane, acetate, etc.) on the biocathode. However, the connections and contributions of planktonic microbial communities have not been effectually understood. Herein, electromethanogenesis were comprehensively investigated in response to different driving-force modes: intermittent electric field applied by manual on-off or natural solar power and continuous electrical field. Intermittent modes implied preferable electron transfer efficiency, higher methane yield and energy recovery efficiencies from wastewater by the microbes in the bulk solutions. Microbial community analysis revealed that less electroactive microorganisms and acetotrophic methanogens in the bulk solutions were accommodated under the intermittent modes than the continuous electrical field, whereas more fermentative bacteria and hydrogenotrophic methanogens evolved in the intermittent driving modes, implying that the interspecies electron transfer both on and away from the electrodes were favorably regulated. Redundancy and network analysis proved that more complicated ecological interactions were shown in the bulk solutions with the periodic on/off of electrical field. These results hinted that the electrostimulation effectively regulated EET bacteria, even in the bulk solutions, while more efficient electron flow to methane through interspecies electron transfer was developed during the intermittent driving regulation.