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Williams MR, Telli AE, Telli N, Islam DT, Hashsham SA. Direct or DNA Extraction-Free Amplification and Quantification of Foodborne Pathogens. Methods Mol Biol 2025; 2852:3-17. [PMID: 39235733 DOI: 10.1007/978-1-0716-4100-2_1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/06/2024]
Abstract
The use of direct nucleic acid amplification of pathogens from food matrices has the potential to reduce time to results over DNA extraction-based approaches as well as traditional culture-based approaches. Here we describe protocols for assay design and experiments for direct amplification of foodborne pathogens in food sample matrices using loop-mediated isothermal amplification (LAMP) and polymerase chain reaction (PCR). The examples provided include the detection of Escherichia coli in milk samples and Salmonella in pork meat samples. This protocol includes relevant reagents and methods including obtaining target sequences, assay design, sample processing, and amplification. These methods, though used for specific example matrices, could be applied to many other foodborne pathogens and sample types.
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Affiliation(s)
- Maggie R Williams
- School of Engineering & Technology, Institute for Great Lakes Research, Central Michigan University, Mt Pleasant, MI, USA
| | - Arife Ezgi Telli
- Department of Food Hygiene and Technology, Faculty of Veterinary Medicine, Selcuk University, Konya, Turkey
| | - Nihat Telli
- Department of Food Technology, Vocational School of Technical Sciences, Konya Technical University, Konya, Turkey
| | - Dar Tafazul Islam
- Department of Civil and Environmental Engineering, Michigan State University, East Lansing, MI, USA
| | - Syed A Hashsham
- Department of Civil and Environmental Engineering, Michigan State University, East Lansing, MI, USA.
- Center for Microbial Ecology, Michigan State University, East Lansing, MI, USA.
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2
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Velez FJ, Kandula N, Blech-Hermoni Y, Jackson CR, Bosilevac JM, Singh P. Digital PCR assay for the specific detection and estimation of Salmonella contamination levels in poultry rinse. Curr Res Food Sci 2024; 9:100807. [PMID: 39076681 PMCID: PMC11284941 DOI: 10.1016/j.crfs.2024.100807] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2024] [Revised: 07/06/2024] [Accepted: 07/08/2024] [Indexed: 07/31/2024] Open
Abstract
Strains of Salmonella are a frequent cause of foodborne illness and are known to contaminate poultry products. Most Salmonella testing methods can qualitatively detect Salmonella and cannot quantify or estimate the Salmonella load in samples. Therefore, the aim of this study was to standardize and validate a partitioned-based digital PCR (dPCR) assay for the detection and estimation of Salmonella contamination levels in poultry rinses. Pure culture Salmonella strains were cultured, enumerated, cold-stressed for 48 h, and used to inoculate whole carcass chicken rinse (WCCR) at 1-4 log CFU/30 mL and enriched at 37 °C for 5 h. Undiluted DNA samples with primer and probes targeting the Salmonella-specific invA gene were used for the dPCR assay. The dPCR assay was highly specific, with a limit of detection of 0.001 ng/μL and a limit of quantification of 0.01 ng/μL. The dPCR assay further showed no PCR reaction inhibition up to 5 μg of crude DNA extract. The assays accurately detected all cold-stressed Salmonella in inoculated WCCR samples following a 5-h enrichment. Most importantly, when converted to log, the dPCR copies/μL values accurately estimated the inoculated Salmonella levels. The dPCR assay standardized in this study is a robust method for the detection and estimation of Salmonella concentration in contaminated food samples. This approach can allow same-day decision-making for poultry processors attempting to maintain limits and controls on Salmonella contamination.
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Affiliation(s)
- Frank J. Velez
- Department of Health, Nutrition and Food Sciences, Florida State University, Tallahassee, FL, 32306, USA
| | - Nethraja Kandula
- Department of Health, Nutrition and Food Sciences, Florida State University, Tallahassee, FL, 32306, USA
| | | | - Charlene R. Jackson
- U.S. National Poultry Research Center, U.S. Department of Agriculture-Agricultural Research Service, 950 College Station Road, Athens, GA, 30605-2720, USA
| | - Joseph M. Bosilevac
- U.S. Department of Agriculture, Agricultural Research Service, Roman L. Hruska U.S. Meat Animal Research Center, Clay Center, NE, USA
| | - Prashant Singh
- Department of Health, Nutrition and Food Sciences, Florida State University, Tallahassee, FL, 32306, USA
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3
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Punchihewage-Don AJ, Schwarz J, Diria A, Bowers J, Parveen S. Prevalence and antibiotic resistance of Salmonella in organic and non-organic chickens on the Eastern Shore of Maryland, USA. Front Microbiol 2024; 14:1272892. [PMID: 38239721 PMCID: PMC10794514 DOI: 10.3389/fmicb.2023.1272892] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2023] [Accepted: 12/08/2023] [Indexed: 01/22/2024] Open
Abstract
Introduction Salmonella infections have been intensely increasing and becoming a universal public health crisis. This study investigated the prevalence of Salmonella in organic and non-organic chickens and the antimicrobial resistance profiles and virulence genes (invA, pagC, and spvC) in recovered Salmonella isolates. Methods Whole chicken carcasses [organic (n = 240) and non-organic (n = 240)] were obtained monthly for 1 year (n = 480) from a retail store on the Eastern Shore of Maryland. Salmonella isolation and identification were conducted by following the whole carcass enrichment method recommended by USDA-FSIS. Confirmed Salmonella isolates (organic n = 76; non-organic n = 137) were serotyped and tested for antibiotic susceptibility and virulence genes using standard methods. Results Forty-nine percent (237/480) of the carcasses were positive for Salmonella. Organic and non-organic positivity rates were 37.1 and 61.8%, respectively. A significantly higher Salmonella contamination was observed in non-organic chickens (p < 0.05). The most common serovars were Salmonella Kentucky (47%), S. Infantis (35%), S. Enteritidis (6%), S. Typhimurium (5%), and S. Blockley (4%). Isolates were frequently resistant to at least one antibiotic (91.24%) or multidrug resistant (45.54%). Resistance was observed to tetracycline (82.8%), minocycline (42.3%), nitrofurantoin (40.3%), cefazolin (38.3%), ampicillin (32.1%), and ceftriaxone (26%). All isolates were susceptible to fluoroquinolone, carbapenem, and glycylcycline. The majority of isolates (99.1%) possessed at least one of three virulence genes of concern and 4.2% tested positive for all three. Ninety-five, 89, and 6.6% of isolates contained invA, pagC, and spvC genes, respectively. The spvC gene was not detected in serovars recovered from organic chickens though 92% and 82% of isolates were positive for invA and pagC. The frequency of Salmonella recovered from non-organic chickens possessing invA, pagC, and spvC genes were 97.1, 89.8, and 10.2%, respectively. Detection of invA and pagC genes showed no significant difference (p > 0.05) between organic and non-organic chickens but a significantly higher spvC gene (p < 0.05) was detected in non-organic chickens due to the majority of S. Enteritidis (92.3%) exclusively recovered from non-organic chicken carried spvC gene. Discussion This study reveals a high prevalence of Salmonella in both organic and non-organic chickens, which exhibit resistance to vital antibiotics and carry virulence genes, thereby creating a potential risk of salmonellosis.
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Affiliation(s)
| | - Jurgen Schwarz
- Department of Agriculture, Food and Resource Sciences, University of Maryland Eastern Shore, Princess Anne, MD, United States
| | - Abdirahman Diria
- Department of Agriculture, Food and Resource Sciences, University of Maryland Eastern Shore, Princess Anne, MD, United States
| | - John Bowers
- U.S. Food and Drug Administration, College Park, MD, United States
| | - Salina Parveen
- Department of Agriculture, Food and Resource Sciences, University of Maryland Eastern Shore, Princess Anne, MD, United States
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Shivaram KB, Bhatt P, Verma MS, Clase K, Simsek H. Bacteriophage-based biosensors for detection of pathogenic microbes in wastewater. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 901:165859. [PMID: 37516175 DOI: 10.1016/j.scitotenv.2023.165859] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/25/2023] [Revised: 07/25/2023] [Accepted: 07/26/2023] [Indexed: 07/31/2023]
Abstract
Wastewater is discarded from several sources, including industry, livestock, fertilizer application, and municipal waste. If the disposed of wastewater has not been treated and processed before discharge to the environment, pathogenic microorganisms and toxic chemicals are accumulated in the disposal area and transported into the surface waters. The presence of harmful microbes is responsible for thousands of human deaths related to water-born contamination every year. To be able to take the necessary step and quick action against the possible presence of harmful microorganisms and substances, there is a need to improve the effective speed of identification and treatment of these problems. Biosensors are such devices that can give quantitative information within a short period of time. There have been several biosensors developed to measure certain parameters and microorganisms. The discovered biosensors can be utilized for the detection of axenic and mixed microbial strains from the wastewaters. Biosensors can further be developed for specific conditions and environments with an in-depth understanding of microbial organization and interaction within that community. In this regard, bacteriophage-based biosensors have become a possibility to identify specific live bacteria in an infected environment. This paper has investigated the current scenario of microbial community analysis and biosensor development in identifying the presence of pathogenic microorganisms.
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Affiliation(s)
- Karthik Basthi Shivaram
- Department of Agricultural & Biological Engineering, Purdue University, West Lafayette, IN 47906, USA
| | - Pankaj Bhatt
- Department of Agricultural & Biological Engineering, Purdue University, West Lafayette, IN 47906, USA
| | - Mohit S Verma
- Department of Agricultural & Biological Engineering, Purdue University, West Lafayette, IN 47906, USA; Weldon School of Biomedical Engineering, Purdue University, West Lafayette, IN 47906, USA; Birck Nanotechnology Center, Purdue University, West Lafayette, IN 47907, USA
| | - Kari Clase
- Department of Agricultural & Biological Engineering, Purdue University, West Lafayette, IN 47906, USA
| | - Halis Simsek
- Department of Agricultural & Biological Engineering, Purdue University, West Lafayette, IN 47906, USA.
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Dhital R, Mustapha A. DNA concentration by solid phase reversible immobilization improves its yield and purity, and detection time of E. coli O157:H7 in foods by high resolution melt curve qPCR. Food Control 2023. [DOI: 10.1016/j.foodcont.2022.109456] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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Influence of Biological and Environmental Factors in the Extraction and Concentration of Foodborne Pathogens using Glycan-Coated Magnetic Nanoparticles. J Food Prot 2023; 86:100066. [PMID: 37005036 DOI: 10.1016/j.jfp.2023.100066] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2022] [Revised: 02/07/2023] [Accepted: 02/15/2023] [Indexed: 02/22/2023]
Abstract
Rapid detection of foodborne pathogens is essential to preventing foodborne illness outbreaks. Before detection can occur, however, it is often necessary to extract and concentrate bacteria. Conventional methods such as centrifugation, filtration, and immunomagnetic separation can often be time-consuming, ineffective, or costly when working with complex food matrices. This work used cost-effective glycan-coated magnetic nanoparticles (MNPs) for rapid concentration of Escherichia coli O157, Listeria monocytogenes, and Staphylococcus aureus. Glycan-coated MNPs were used to concentrate bacteria from both buffer solution and food matrices while examining the effect of factors including solution pH, bacterial concentration, and target bacterial species. In both pH 7 and reduced pH experiments, successful extraction of bacterial cells occurred in all food matrices and bacteria tested. In neutral pH buffer solution, bacteria were concentrated to 4.55 ± 1.17, 31.68 ± 6.10 and 64.27 ± 16.78 times their initial concentration (mean ± standard deviation) for E. coli, L. monocytogenes and S. aureus, respectively. Successful bacterial concentration occurred in several food matrices, including S. aureus in milk (pH 6), L. monocytogenes in sausage (pH 7), and E. coli O157 in flour (pH 7). The insights gained may facilitate future applications of glycan-coated MNPs to extract foodborne pathogens.
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Lee SY, Kim JH, Oh SW. Combination of filtration and immunomagnetic separation based on real-time PCR to detect foodborne pathogens in fresh-cut apple. J Microbiol Methods 2022; 201:106577. [PMID: 36103904 DOI: 10.1016/j.mimet.2022.106577] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2022] [Revised: 08/23/2022] [Accepted: 09/06/2022] [Indexed: 12/27/2022]
Abstract
Rapid detection methods require pre-enrichment culture in order to detect low levels of foodborne pathogens. To rapidly detect foodborne pathogens, enrichment culture processes could be replaced. Filtration and immunomagnetic separation methods have been identified to effectively concentrate and separate target pathogens from foods. In this study, a combination of filtration and immunomagnetic separation (IMS) has enabled the rapid and sensitive detection of foodborne pathogens. The pretreatment method, including separation and concentration procedures, increased sensitivity 10-100-fold. The sensitivity of a combination method using filtration and IMS to detect Escherichia coli O157:H7 and Salmonella enterica subsp. enterica serovar Typhimurium was 100-101 CFU/10 mL. In fresh-cut apples, IMS combined with filtration effectively improved the detection limit of real-time PCR to 2.70 × 101 CFU/g in E. coli O157:H7 and 1.80 × 102 CFU/g in Salmonella. The filtration simplified processing of large-volumes (250 mL) and effectively concentrated pathogens while decreasing immunomagnetic beads used in IMS. Bacterial concentration by IMS combined with filtration increased sensitivity 10-100-fold compared with control. In addition, the application of IMS effectively removed concentrated residual food material (10-15 mg/mL) after filtration, improving relative sensitivity. In conclusion, this method may detect foodborne pathogen in foods such as fresh-cut fruits in a more rapid and sensitive fashion than traditional culture-based methods.
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Affiliation(s)
- So-Young Lee
- Department of Food and Nutrition, Kookmin University, Seoul 136-702, Republic of Korea
| | - Jin-Hee Kim
- Department of Food and Nutrition, Mokpo National University, Jeonnam, Republic of Korea; Research Institute of Human Ecology, Mokpo National University, Jeonnam, Republic of Korea
| | - Se-Wook Oh
- Department of Food and Nutrition, Kookmin University, Seoul 136-702, Republic of Korea.
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Lee SY, Oh SW. Filtration-based LAMP-CRISPR/Cas12a system for the rapid, sensitive and visualized detection of Escherichia coli O157:H7. Talanta 2022; 241:123186. [DOI: 10.1016/j.talanta.2021.123186] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2021] [Revised: 12/23/2021] [Accepted: 12/26/2021] [Indexed: 12/22/2022]
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9
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Dester E, Alocilja E. Current Methods for Extraction and Concentration of Foodborne Bacteria with Glycan-Coated Magnetic Nanoparticles: A Review. BIOSENSORS 2022; 12:112. [PMID: 35200372 PMCID: PMC8869689 DOI: 10.3390/bios12020112] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/08/2022] [Revised: 02/04/2022] [Accepted: 02/08/2022] [Indexed: 06/01/2023]
Abstract
Rapid and accurate food pathogen detection is an essential step to preventing foodborne illnesses. Before detection, removal of bacteria from the food matrix and concentration to detectable levels are often essential steps. Although many reviews discuss rapid concentration methods for foodborne pathogens, the use of glycan-coated magnetic nanoparticles (MNPs) is often omitted. This review seeks to analyze the potential of this technique as a rapid and cost-effective solution for concentration of bacteria directly from foods. The primary focus is the mechanism of glycan-coated MNP binding, as well as its current applications in concentration of foodborne pathogens. First, a background on the synthesis, properties, and applications of MNPs is provided. Second, synthesis of glycan-coated particles and their theorized mechanism for bacterial adhesion is described. Existing research into extraction of bacteria directly from food matrices is also analyzed. Finally, glycan-coated MNPs are compared to the magnetic separation technique of immunomagnetic separation (IMS) in terms of cost, time, and other factors. At its current state, glycan-coated MNPs require more research to fully identify the mechanism, potential for optimization, and extraction capabilities directly in food matrices. However, current research indicates glycan-coated MNPs are an incredibly cost-effective method for rapid food pathogen extraction and concentration.
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Affiliation(s)
- Emma Dester
- Nano-Biosensors Lab, Department of Biosystems and Agricultural Engineering, Michigan State University, East Lansing, MI 48824, USA;
- Global Alliance for Rapid Diagnostics, Michigan State University, East Lansing, MI 48824, USA
| | - Evangelyn Alocilja
- Nano-Biosensors Lab, Department of Biosystems and Agricultural Engineering, Michigan State University, East Lansing, MI 48824, USA;
- Global Alliance for Rapid Diagnostics, Michigan State University, East Lansing, MI 48824, USA
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Güven E, Azizoglu RO. The Recent Original Perspectives on Nonculture-Based Bacteria Detection Methods: A Comprehensive Review. Foodborne Pathog Dis 2022; 19:425-440. [DOI: 10.1089/fpd.2021.0078] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Affiliation(s)
- Ece Güven
- Department of Gene and Cell Therapy and Mediterranean (Akdeniz) University, Antalya, Turkey
| | - Reha Onur Azizoglu
- Department of Gene and Cell Therapy and Mediterranean (Akdeniz) University, Antalya, Turkey
- Department of Food Engineering, Mediterranean (Akdeniz) University, Antalya, Turkey
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11
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A colorimetric lateral flow assay based on multiplex PCR for the rapid detection of viable Escherichia coli O157:H7 and Salmonella Typhimurium without enrichment. Lebensm Wiss Technol 2021. [DOI: 10.1016/j.lwt.2021.112242] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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12
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Han H, Sohn B, Choi J, Jeon S. Recent advances in magnetic nanoparticle-based microfluidic devices for the pretreatment of pathogenic bacteria. Biomed Eng Lett 2021; 11:297-307. [PMID: 34426777 PMCID: PMC8374882 DOI: 10.1007/s13534-021-00202-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2021] [Revised: 08/06/2021] [Accepted: 08/08/2021] [Indexed: 12/15/2022] Open
Abstract
Rapid and sensitive detection of pathogenic bacteria in various samples, including food and drinking water, is important to prevent bacterial diseases. Most bacterial solutions contain only a small number of bacteria in complex matrices with impurities; hence, pretreatment is necessary to separate and concentrate target bacteria before sensing. Among various pretreatment methods, iron oxide magnetic nanoparticle (MNP)-based pretreatment has drawn attention owing to the unique properties of MNP, such as high magnetic susceptibility, superparamagnetism, and biocompatibility. After target bacteria are captured by recognition molecule-functionalized MNPs, bacteria-MNP complexes can be easily separated and enriched by applying an external magnetic field. Various devices, such as optical, electrochemical, and magnetoresistance sensors, can be used to detect target bacteria, and their detection principles have been discussed in numerous review papers. Herein, we focus on recent research advances and challenges in magnetic pretreatment of pathogenic bacteria using microfluidic devices, which offer the advantages of process automation and miniaturization.
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Affiliation(s)
- Hyunsoo Han
- Department of Chemical Engineering, Pohang University of Science and Technology (POSTECH), Pohang, Gyeongbuk Republic of Korea
| | - Bokyeong Sohn
- Department of Chemical Engineering, Pohang University of Science and Technology (POSTECH), Pohang, Gyeongbuk Republic of Korea
| | - Jihun Choi
- Department of Chemical Engineering, Pohang University of Science and Technology (POSTECH), Pohang, Gyeongbuk Republic of Korea
| | - Sangmin Jeon
- Department of Chemical Engineering, Pohang University of Science and Technology (POSTECH), Pohang, Gyeongbuk Republic of Korea
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Khodadad CLM, Oubre CM, Castro VA, Flint SM, Roman MC, Ott CM, Spern CJ, Hummerick ME, Maldonado Vazquez GJ, Birmele MN, Whitlock Q, Scullion M, Flowers CM, Wheeler RM, Melendez O. A Microbial Monitoring System Demonstrated on the International Space Station Provides a Successful Platform for Detection of Targeted Microorganisms. Life (Basel) 2021; 11:492. [PMID: 34072140 PMCID: PMC8229003 DOI: 10.3390/life11060492] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2021] [Revised: 05/19/2021] [Accepted: 05/21/2021] [Indexed: 12/22/2022] Open
Abstract
Closed environments such as the International Space Station (ISS) and spacecraft for other planned interplanetary destinations require sustainable environmental control systems for manned spaceflight and habitation. These systems require monitoring for microbial contaminants and potential pathogens that could foul equipment or affect the health of the crew. Technological advances may help to facilitate this environmental monitoring, but many of the current advances do not function as expected in reduced gravity conditions. The microbial monitoring system (RAZOR® EX) is a compact, semi-quantitative rugged PCR instrument that was successfully tested on the ISS using station potable water. After a series of technical demonstrations between ISS and ground laboratories, it was determined that the instruments functioned comparably and provided a sample to answer flow in approximately 1 hour without enrichment or sample manipulation. Post-flight, additional advancements were accomplished at Kennedy Space Center, Merritt Island, FL, USA, to expand the instrument's detections of targeted microorganisms of concern such as water, food-borne, and surface microbes including Salmonella enterica serovar Typhimurium, Pseudomonas aeruginosa, Escherichia coli, and Aeromonas hydrophilia. Early detection of contaminants and bio-fouling microbes will increase crew safety and the ability to make appropriate operational decisions to minimize exposure to these contaminants.
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Affiliation(s)
- Christina L. M. Khodadad
- Kennedy Space Center, Amentum Services, Inc., LASSO, Merritt Island, FL 32899, USA; (C.J.S.); (M.E.H.)
| | - Cherie M. Oubre
- Johnson Space Center, National Aeronautics and Space Administration, Houston, TX 77058, USA; (C.M.O.); (S.M.F.); (C.M.O.)
| | - Victoria A. Castro
- Johnson Space Center, Government Solutions, KBR, Houston, TX 77058, USA;
| | - Stephanie M. Flint
- Johnson Space Center, National Aeronautics and Space Administration, Houston, TX 77058, USA; (C.M.O.); (S.M.F.); (C.M.O.)
| | - Monsi C. Roman
- Marshall Space Flight Center, Science and Technology Office, NASA, Huntsville, AL 35808, USA;
| | - Charlie Mark Ott
- Johnson Space Center, National Aeronautics and Space Administration, Houston, TX 77058, USA; (C.M.O.); (S.M.F.); (C.M.O.)
| | - Cory J. Spern
- Kennedy Space Center, Amentum Services, Inc., LASSO, Merritt Island, FL 32899, USA; (C.J.S.); (M.E.H.)
| | - Mary E. Hummerick
- Kennedy Space Center, Amentum Services, Inc., LASSO, Merritt Island, FL 32899, USA; (C.J.S.); (M.E.H.)
| | | | | | - Quinn Whitlock
- BioFire Defense, Salt Lake City, UT 84107, USA; (Q.W.); (M.S.); (C.M.F.)
| | - Matt Scullion
- BioFire Defense, Salt Lake City, UT 84107, USA; (Q.W.); (M.S.); (C.M.F.)
| | | | - Raymond M. Wheeler
- Kennedy Space Center, ISS Utilization, UB-A, NASA, Merritt Island, FL 32899, USA; (R.M.W.); (O.M.)
| | - Orlando Melendez
- Kennedy Space Center, ISS Utilization, UB-A, NASA, Merritt Island, FL 32899, USA; (R.M.W.); (O.M.)
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14
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Kim JH, Oh SW. Pretreatment methods for nucleic acid-based rapid detection of pathogens in food: A review. Food Control 2021. [DOI: 10.1016/j.foodcont.2020.107575] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
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15
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Kim JH, Oh SW. Rapid and sensitive detection of E. coli O157:H7 and S. Typhimurium in iceberg lettuce and cabbage using filtration, DNA concentration, and qPCR without enrichment. Food Chem 2020; 327:127036. [PMID: 32446024 DOI: 10.1016/j.foodchem.2020.127036] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2019] [Revised: 04/13/2020] [Accepted: 05/10/2020] [Indexed: 12/26/2022]
Abstract
The outbreaks due to the low number of foodborne pathogens present in ready-to-eat products can be prevented by rapid and sensitive detection method. However, as a conventional detection method, it is impossible to monitor foodborne bacteria existing which is less than 50 cfu/25 g in a food. This study was designed to investigate the possibility of detecting 1 cfu in the short-term through filtration, DNA concentration, and qPCR. As a result of the filtration + DNA concentration method, the recovery concentrations of Escherichia coli O157:H7 and Salmonella Typhimurium was not significantly different from initial inoculation (>7 cfu/25 g). In iceberg lettuce and cabbage, this method was able to detect 7 and 7 cfu/25 g of E. coli and 68 and 5 cfu/25 g of S. Typhimurium. We demonstrated the potential of the filtration + DNA concentration method as a shorter time alternative to conventional enrichment-based rapid detection in vegetables.
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Affiliation(s)
- Jin-Hee Kim
- Department of Foods and Nutrition, Kookmin University, Seoul 136-702, Republic of Korea
| | - Se-Wook Oh
- Department of Foods and Nutrition, Kookmin University, Seoul 136-702, Republic of Korea.
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16
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Jamal RB, Shipovskov S, Ferapontova EE. Electrochemical Immuno- and Aptamer-Based Assays for Bacteria: Pros and Cons over Traditional Detection Schemes. SENSORS (BASEL, SWITZERLAND) 2020; 20:E5561. [PMID: 32998409 PMCID: PMC7582323 DOI: 10.3390/s20195561] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/31/2020] [Revised: 09/15/2020] [Accepted: 09/23/2020] [Indexed: 01/20/2023]
Abstract
Microbiological safety of the human environment and health needs advanced monitoring tools both for the specific detection of bacteria in complex biological matrices, often in the presence of excessive amounts of other bacterial species, and for bacteria quantification at a single cell level. Here, we discuss the existing electrochemical approaches for bacterial analysis that are based on the biospecific recognition of whole bacterial cells. Perspectives of such assays applications as emergency-use biosensors for quick analysis of trace levels of bacteria by minimally trained personnel are argued.
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Affiliation(s)
| | | | - Elena E. Ferapontova
- Interdisciplinary Nanoscience Center (iNANO), Aarhus University Gustav Wieds Vej 14, DK-8000 Aarhus, Denmark; (R.B.J.); (S.S.)
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17
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Rapid and sensitive detection of Salmonella spp. in raw minced meat samples using droplet digital PCR. Eur Food Res Technol 2020. [DOI: 10.1007/s00217-020-03531-x] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
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18
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Mao C, Xue C, Wang X, He S, Wu L, Yan X. Rapid quantification of pathogenic Salmonella Typhimurium and total bacteria in eggs by nano-flow cytometry. Talanta 2020; 217:121020. [PMID: 32498838 DOI: 10.1016/j.talanta.2020.121020] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2020] [Revised: 04/03/2020] [Accepted: 04/06/2020] [Indexed: 12/22/2022]
Abstract
Rapid quantification of pathogenic Salmonella Typhimurium (S. Typhimurium) and total bacteria in eggs is highly desired for food safety control. However, the complexity of egg matrix presents a significant challenge for sensitive detection of bacteria. In this study, a sample pretreatment protocol, including dilution, fat dissolution, protein degradation, filtration, and washing was developed to circumvent this challenge. A laboratory-built nano-flow cytometer (nFCM) that is hundreds of fold more sensitive than the conventional flow cytometer was employed to analyze individual bacteria upon nucleic acid and immunofluorescent staining. Eggs spiked with pathogenic S. Typhimurium and harmless Escherichia coli K12 (E. coli K12) were used as the model system to optimize the sample pretreatment protocol. S. Typhimurium and total bacteria in eggs can be quantified without cultural enrichment, and the whole process of sample pretreatment, staining, and instrument analysis can be accomplished within 1.5 h. The bacterial recovery rate upon sample pretreatment, detection limit, and dynamic range for S. Typhimurium in eggs were 92%, 2 × 103 cells/mL, and from 2 × 103 to 4 × 108 cells/mL, respectively. The as-developed approach can specifically distinguish S. Typhimurium from other bacteria and successful application to bacterial detection in eggs freshly purchased from supermarket and spoiled eggs upon inappropriate storage was demonstrated.
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Affiliation(s)
- Cuiping Mao
- Department of Chemical Biology, The MOE Key Laboratory of Spectrochemical Analysis & Instrumentation, The Key Laboratory for Chemical Biology of Fujian Province, Collaborative Innovation Center of Chemistry for Energy Materials, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, Fujian, 361005, People's Republic of China
| | - Chengfeng Xue
- Department of Chemical Biology, The MOE Key Laboratory of Spectrochemical Analysis & Instrumentation, The Key Laboratory for Chemical Biology of Fujian Province, Collaborative Innovation Center of Chemistry for Energy Materials, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, Fujian, 361005, People's Republic of China
| | - Xuzheng Wang
- Department of Chemical Biology, The MOE Key Laboratory of Spectrochemical Analysis & Instrumentation, The Key Laboratory for Chemical Biology of Fujian Province, Collaborative Innovation Center of Chemistry for Energy Materials, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, Fujian, 361005, People's Republic of China
| | - Shengbin He
- Department of Chemical Biology, The MOE Key Laboratory of Spectrochemical Analysis & Instrumentation, The Key Laboratory for Chemical Biology of Fujian Province, Collaborative Innovation Center of Chemistry for Energy Materials, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, Fujian, 361005, People's Republic of China
| | - Lina Wu
- Department of Chemical Biology, The MOE Key Laboratory of Spectrochemical Analysis & Instrumentation, The Key Laboratory for Chemical Biology of Fujian Province, Collaborative Innovation Center of Chemistry for Energy Materials, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, Fujian, 361005, People's Republic of China
| | - Xiaomei Yan
- Department of Chemical Biology, The MOE Key Laboratory of Spectrochemical Analysis & Instrumentation, The Key Laboratory for Chemical Biology of Fujian Province, Collaborative Innovation Center of Chemistry for Energy Materials, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, Fujian, 361005, People's Republic of China.
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19
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Momin KM, Milton AAP, Ghatak S, Thomas SC, Priya GB, Das S, Shakuntala I, Sanjukta R, Puro KU, Sen A. Development of a novel and rapid polymerase spiral reaction (PSR) assay to detect Salmonella in pork and pork products. Mol Cell Probes 2020; 50:101510. [DOI: 10.1016/j.mcp.2020.101510] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2019] [Revised: 12/30/2019] [Accepted: 01/13/2020] [Indexed: 02/08/2023]
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20
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Lee WI, Park Y, Shrivastava S, Jung T, Meeseepong M, Lee J, Jeon B, Yang S, Lee NE. A fully integrated bacterial pathogen detection system based on count-on-a-cartridge platform for rapid, ultrasensitive, highly accurate and culture-free assay. Biosens Bioelectron 2020; 152:112007. [DOI: 10.1016/j.bios.2020.112007] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2019] [Revised: 01/02/2020] [Accepted: 01/04/2020] [Indexed: 12/13/2022]
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21
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Gao S, He L. Development of a filtration-based SERS mapping platform for specific screening of Salmonella enterica serovar Enteritidis. Anal Bioanal Chem 2019; 411:7899-7906. [PMID: 31745614 DOI: 10.1007/s00216-019-02204-3] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2019] [Revised: 09/30/2019] [Accepted: 10/09/2019] [Indexed: 01/12/2023]
Abstract
The presence of Salmonella in natural freshwater and drinking water is a leading cause of intestinal illness all over the world; thus, the detection of Salmonella in water is of great importance to public health. The objective of this study is to develop a rapid screening method for the detection of Salmonella enterica serovar Enteritidis in water involving surface-enhanced Raman spectroscopy (SERS), aptamers, and filtration. SERS offers a great alternative to traditional methods of pathogen detection, with a simplified detection assay and shortened detection time. The specific capturing and labeling of Salmonella Enteritidis are realized by a specific single-stranded DNA aptamer, which is modified with an additional chain of adenine and fluorescein (FAM) and used as presence/absence indicator of Salmonella Enteritidis. By incorporating a vacuum filtration system, bacterial cells recognized by the specific aptamer are concentrated onto a membrane. With additional filtration of gold nanoparticles, the aptamer signals were captured and used to construct a SERS mapping indicating the presence and absence of target bacterial strains with potential quantitative capability. The specificity of the method was validated by using other strains of bacteria such as Escherichia coli and Listeria monocytogenes. The sensitivity of the method goes down to 103 CFU/mL for 1 mL of sample with a total detection and analyzing time within 3 h. This study demonstrates the capability of the filtration-based SERS platform for detecting Salmonella Enteritidis in various aqueous matrices such as distilled water and rinsing water from fresh produce with high selectivity and sensitivity. Graphical abstract.
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Affiliation(s)
- Siyue Gao
- Department of Food Science, University of Massachusetts Amherst, Amherst, MA, 01002, USA
| | - Lili He
- Department of Food Science, University of Massachusetts Amherst, Amherst, MA, 01002, USA.
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22
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Kim JH, Oh SW. Optimization of Bacterial Concentration by Filtration for Rapid Detection of Foodborne Escherichia coli O157:H7 Using Real-Time PCR Without Microbial Culture Enrichment. J Food Sci 2019; 84:3241-3245. [PMID: 31604365 DOI: 10.1111/1750-3841.14836] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2019] [Revised: 09/06/2019] [Accepted: 09/10/2019] [Indexed: 01/12/2023]
Abstract
Escherichia coli O157:H7 is an important foodborne pathogen and has been implicated in numerous food poisoning outbreaks worldwide. Although several microbiological and molecular methods have been developed to detect E. coli O157:H7, the difficulty to rapidly detect low levels of the foodborne bacteria persists. Here, the optimization of a filtration technique to concentrate and rapidly detect E. coli O157:H7 was conducted. Using homogenates prepared from freshly cut lettuce and cabbage samples, the E. coli O157:H7 concentration efficiencies of seven membrane filters were compared. Mixed cellulose ester (MCE) and polyvinylidene difluoride (PVDF) filters demonstrated the highest bacterial recoveries. In addition, the optimal E. coli O157:H7 detachment method from MCE filters after filtration was investigated. Tapping for 80 s was demonstrated to be the most effective method for detaching bacteria from the filters. Further, the possibility of the rapid detection of low levels of E. coli O157:H7 in lettuce and cabbage was evaluated using real-time polymerase chain reaction after bacterial concentration using MCE and PVDF filters. The use of MCE filters enabled the detection of 10° CFU/g (5 CFU/g) of E. coli O157:H7 within 2 hr without microbial enrichment culture. Therefore, concentration by filtration can be used for the rapid detection of low levels of foodborne pathogens. PRACTICAL APPLICATION: The modified method, which has been verified in this study, has been optimized to reduce the analysis time and to detect very low concentrations of E. coli O157:H7 within 2 hr. All these detection systems have a direct economic impact on the food analysis of producers, health authorities, or third-party laboratories.
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Affiliation(s)
- Jin-Hee Kim
- Dept. of Foods and Nutrition, Kookmin Univ., Seoul, 136-702, Korea
| | - Se-Wook Oh
- Dept. of Foods and Nutrition, Kookmin Univ., Seoul, 136-702, Korea
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23
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Research Progress of M13 Bacteriophage-Based Biosensors. NANOMATERIALS 2019; 9:nano9101448. [PMID: 31614669 PMCID: PMC6835900 DOI: 10.3390/nano9101448] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/03/2019] [Revised: 10/02/2019] [Accepted: 10/03/2019] [Indexed: 12/24/2022]
Abstract
Recently, new virus-based sensor systems that operate on M13 bacteriophage infrastructure have attracted considerable attention. These systems can detect a range of chemicals with excellent sensitivity and selectivity. Filaments consistent with M13 bacteriophages can be ordered by highly established forms of self-assembly. This allows M13 bacteriophages to build a homogeneous distribution and infiltrate the network structure of nanostructures under mild conditions. Phage display, involving the genetic engineering of M13 bacteriophages, is another strong feature of the M13 bacteriophage as a functional building block. The numerous genetic modification possibilities of M13 bacteriophages are clearly the key features, and far more applications are envisaged. This paper reviews the recent progress in the application of the M13 bacteriophage self-assembly structures through to sensor systems and discusses future M13 bacteriophage technology.
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24
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Bhandari D, Chen FC, Bridgman RC. Detection of Salmonella Typhimurium in Romaine Lettuce Using a Surface Plasmon Resonance Biosensor. BIOSENSORS 2019; 9:E94. [PMID: 31357708 PMCID: PMC6784360 DOI: 10.3390/bios9030094] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/20/2019] [Revised: 07/17/2019] [Accepted: 07/22/2019] [Indexed: 12/05/2022]
Abstract
Leafy vegetables have been associated with high-profile outbreaks causing severe illnesses. Timely and accurate identification of potential contamination is essential to ensure food safety. A surface plasmon resonance (SPR) assay has been developed for the detection of Salmonella Typhimurium in leafy vegetables. The assay utilizes a pair of well characterized monoclonal antibodies specific to the flagellin of S. Typhimurium. Samples of romaine lettuce contaminated with S. Typhimurium at different levels (between 0.9 and 5.9 log cfu/g) were pre-enriched in buffered peptone water. Three SPR assay formats, direct assay, sequential two-step sandwich assay, and pre-incubation one-step sandwich assay were evaluated. All three assay formats detect well even at a low level of contamination (0.9 log cfu/g). The SPR assay showed a high specificity for the detection of S. Typhimurium in the presence of other commensal bacteria in the romaine lettuce samples. The results also suggested that further purification of flagellin from the sample preparation using immunomagnetic separation did not improve the detection sensitivity of the SPR assay. The functional protocol developed in this study can be readily used for the detection of S. Typhimurium in leafy vegetables with high sensitivity and specificity.
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Affiliation(s)
- Devendra Bhandari
- Department of Agricultural and Environmental Sciences, Tennessee State University, Nashville, TN 37209, USA
| | - Fur-Chi Chen
- Department of Human Sciences, Tennessee State University, Nashville, TN 37209, USA.
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25
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Kim JH, Oh SW. Development of a filtration-based LAMP-LFA method as sensitive and rapid detection of E. coli O157:H7. JOURNAL OF FOOD SCIENCE AND TECHNOLOGY 2019; 56:2576-2583. [PMID: 31168139 PMCID: PMC6525692 DOI: 10.1007/s13197-019-03740-7] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Revised: 03/11/2019] [Accepted: 03/19/2019] [Indexed: 12/31/2022]
Abstract
Rapid detection of low number of pathogenic bacteria in food is difficult. This study tested the filter-based loop-mediated isothermal amplification-lateral flow immunoassay (LAMP-LFA) method for rapid detection of pathogens in real food. Escherichia coli O157:H7 was inoculated on 25 g of beef and the homogenized sample was filtered with 0.45 μm cellulose nitrate filter, and concentrated E. coli was recovered and DNA was extracted and analyzed by LAMP. LFA reaction was performed by hybridization of digoxygenin-labeled LAMP amplicon and biotinylated probe. The sensitivity of the filtered sample was 100 times more sensitive than that of the unfiltered sample. The total reaction time used for detection from sample preparation to confirmation of E. coli was within 3 h. These results suggest that the LAMP-LFA method can be used in real food systems as point-of-care testing for E. coli O157:H7 in beef.
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Affiliation(s)
- Jin-Hee Kim
- Department of Foods and Nutrition, Kookmin University, Seoul, 136-702 Korea
| | - Se-Wook Oh
- Department of Foods and Nutrition, Kookmin University, Seoul, 136-702 Korea
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26
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Buehler AJ, Wiedmann M, Kassaify Z, Cheng RA. Evaluation of invA Diversity among Salmonella Species Suggests Why Some Commercially Available Rapid Detection Kits May Fail To Detect Multiple Salmonella Subspecies and Species. J Food Prot 2019; 82:710-717. [PMID: 30917039 DOI: 10.4315/0362-028x.jfp-18-525] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
HIGHLIGHTS Salmonella exhibits tremendous diversity, with 2,659 documented serovars. invA is a common gene target for detecting Salmonella spp. Detection methods should be validated with a sufficiently diverse strain set.
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Affiliation(s)
- Ariel J Buehler
- 1 Department of Food Science, Cornell University, Ithaca, New York 14853 (ORCID: https://orcid.org/0000-0002-5932-7011 [R.A.C.])
| | - Martin Wiedmann
- 1 Department of Food Science, Cornell University, Ithaca, New York 14853 (ORCID: https://orcid.org/0000-0002-5932-7011 [R.A.C.])
| | - Zeina Kassaify
- 2 Mars, Inc., 6885 Elm Street, McLean, Virginia 22101, USA
| | - Rachel A Cheng
- 1 Department of Food Science, Cornell University, Ithaca, New York 14853 (ORCID: https://orcid.org/0000-0002-5932-7011 [R.A.C.])
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27
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Williams MR, Hashsham SA. Direct or DNA Extraction-Free Amplification and Quantification of Foodborne Pathogens. Methods Mol Biol 2019; 1918:21-33. [PMID: 30580396 DOI: 10.1007/978-1-4939-9000-9_2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
The use of direct nucleic acid amplification of pathogens from food matrices has the potential to reduce time to results over DNA extraction-based approaches as well as traditional culture-based approaches. Here we describe protocols for assay design and experiments for direct amplification of foodborne pathogens in food sample matrices using loop-mediated isothermal amplification (LAMP) and polymerase chain reaction (PCR). The examples provided include the detection Escherichia coli in milk samples and Salmonella in pork meat samples. This protocol includes relevant reagents and methods including obtaining target sequences, assay design, sample processing, and amplification. These methods, though used for specific example matrices, could be applied to many other foodborne pathogens and sample types.
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Affiliation(s)
- Maggie R Williams
- Department of Civil and Environmental Engineering, Michigan State University, East Lansing, MI, USA
| | - Syed A Hashsham
- Department of Civil and Environmental Engineering, Michigan State University, East Lansing, MI, USA. .,Center for Microbial Ecology, Michigan State University, East Lansing, MI, USA.
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28
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Niyomdecha S, Limbut W, Numnuam A, Kanatharana P, Charlermroj R, Karoonuthaisiri N, Thavarungkul P. Phage-based capacitive biosensor for Salmonella detection. Talanta 2018; 188:658-664. [PMID: 30029427 DOI: 10.1016/j.talanta.2018.06.033] [Citation(s) in RCA: 50] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2018] [Revised: 06/09/2018] [Accepted: 06/09/2018] [Indexed: 11/18/2022]
Abstract
This article reports the detection of Salmonella spp. based on M13 bacteriophage in a capacitive flow injection system. Salmonella-specific M13 bacteriophage was immobilized on a polytyramine/gold surface using glutaraldehyde as a crosslinker. The M13 bacteriophage modified electrode can specifically bind to Salmonella spp. via the amino acid groups on the filamentous phage. An alkaline solution was used to break the binding between the sensing surface and the analyte to allow renewable use up to 40 times. This capacitive system provided good reproducibility with a relative standard deviation (RSD) of 1.1%. A 75 µL min-1 flow rate and a 300 µL sample volume provided a wide linear range, from 2.0 × 102 to 1.0 × 107 cfu mL-1, with a detection limit of 200 cfu mL-1. Bacteria concentration can be analyzed within 40 min after the sample injection. When applied to test real samples (raw chicken meat) it provided good recoveries (100-111%). An enrichment process was also explored to increase the bacteria concentration, enabling a quantitative detection of Salmonella spp. This biosensor opens a new opportunity for the detection of pathogenic bacteria using bacteriophage.
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Affiliation(s)
- Saroh Niyomdecha
- Trace Analysis and Biosensor Research Center, Prince of Songkla University, Hat Yai, Songkhla 90112, Thailand; Center of Excellence for Innovation in Chemistry, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla 90112, Thailand; Department of Chemistry, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla 90112, Thailand
| | - Warakorn Limbut
- Trace Analysis and Biosensor Research Center, Prince of Songkla University, Hat Yai, Songkhla 90112, Thailand; Center of Excellence for Innovation in Chemistry, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla 90112, Thailand; Department of Applied Science, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla 90112, Thailand
| | - Apon Numnuam
- Trace Analysis and Biosensor Research Center, Prince of Songkla University, Hat Yai, Songkhla 90112, Thailand; Center of Excellence for Innovation in Chemistry, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla 90112, Thailand; Department of Chemistry, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla 90112, Thailand
| | - Proespichaya Kanatharana
- Trace Analysis and Biosensor Research Center, Prince of Songkla University, Hat Yai, Songkhla 90112, Thailand; Center of Excellence for Innovation in Chemistry, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla 90112, Thailand; Department of Chemistry, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla 90112, Thailand
| | - Ratthaphol Charlermroj
- National Center for Genetic Engineering and Biotechnology, 113 Thailand Science Park, Phahonyothin Road, Khlong Nueng, Khlong Luang, Pathum Thani 12120, Thailand
| | - Nitsara Karoonuthaisiri
- National Center for Genetic Engineering and Biotechnology, 113 Thailand Science Park, Phahonyothin Road, Khlong Nueng, Khlong Luang, Pathum Thani 12120, Thailand.
| | - Panote Thavarungkul
- Trace Analysis and Biosensor Research Center, Prince of Songkla University, Hat Yai, Songkhla 90112, Thailand; Center of Excellence for Innovation in Chemistry, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla 90112, Thailand; Department of Physics, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla 90112, Thailand.
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29
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Liu H, Whitehouse CA, Li B. Presence and Persistence of Salmonella in Water: The Impact on Microbial Quality of Water and Food Safety. Front Public Health 2018; 6:159. [PMID: 29900166 PMCID: PMC5989457 DOI: 10.3389/fpubh.2018.00159] [Citation(s) in RCA: 91] [Impact Index Per Article: 15.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2018] [Accepted: 05/10/2018] [Indexed: 01/23/2023] Open
Abstract
Salmonella ranks high among the pathogens causing foodborne disease outbreaks. According to the Centers for Disease Control and Prevention, Salmonella contributed to about 53.4% of all foodborne disease outbreaks from 2006 to 2017, and approximately 32.7% of these foodborne Salmonella outbreaks were associated with consumption of produce. Trace-back investigations have suggested that irrigation water may be a source of Salmonella contamination of produce and a vehicle for transmission. Presence and persistence of Salmonella have been reported in surface waters such as rivers, lakes, and ponds, while ground water in general offers better microbial quality for irrigation. To date, culture methods are still the gold standard for detection, isolation and identification of Salmonella in foods and water. In addition to culture, other methods for the detection of Salmonella in water include most probable number, immunoassay, and PCR. The U.S. Food and Drug Administration (FDA) issued the Produce Safety Rule (PSR) in January 2013 based on the Food Safety Modernization Act (FSMA), which calls for more efforts toward enhancing and improving approaches for the prevention of foodborne outbreaks. In the PSR, agricultural water is defined as water used for in a way that is intended to, or likely to, contact covered produce, such as spray, wash, or irrigation. In summary, Salmonella is frequently present in surface water, an important source of water for irrigation. An increasing evidence indicates irrigation water as a source (or a vehicle) for transmission of Salmonella. This pathogen can survive in aquatic environments by a number of mechanisms, including entry into the viable but nonculturable (VBNC) state and/or residing within free-living protozoa. As such, assurance of microbial quality of irrigation water is critical to curtail the produce-related foodborne outbreaks and thus enhance the food safety. In this review, we will discuss the presence and persistence of Salmonella in water and the mechanisms Salmonella uses to persist in the aquatic environment, particularly irrigation water, to better understand the impact on the microbial quality of water and food safety due to the presence of Salmonella in the water environment.
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Affiliation(s)
- Huanli Liu
- Branch of Microbiology, Arkansas Laboratory, Office of Regulatory Affairs, United States Food and Drug Administration, Jefferson, AR, United States
| | - Chris A. Whitehouse
- Division of Molecular Biology, Center for Food Safety and Applied Nutrition, United States Food and Drug Administration, Laurel, MD, United States
| | - Baoguang Li
- Division of Molecular Biology, Center for Food Safety and Applied Nutrition, United States Food and Drug Administration, Laurel, MD, United States
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30
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Campoccia D, Speziale P, An Y, Del Pozo J, Ceresa L, Pegreffi F, Montanaro L, Arciola C. Innovative Methods of Rapid Bacterial Quantification and Applicability in Diagnostics and in Implant Materials Assessment. Int J Artif Organs 2018; 30:842-51. [DOI: 10.1177/039139880703000914] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
In recent years, a variety of new technologies have been proposed that allow rapid qualitative and quantitative microbiological analyses. In this paper we discuss the urgent needs for reliable and rapid microbiological analytical techniques in different applicative fields involving the research, production and medical application of implant materials, and the potential benefits derived from the use of new methods for rapid bacterial quantification. Current compendial methods are easy to perform and have gained confidence over their long period of use, but the supplemental use of new technologies could represent real breakthroughs whenever sensitive and rapid responses are urgently required and not met by the tests currently in use. Overall, the new microbiological methods require critical evaluation depending on their specific type of application and they may still not be thought of as totally substitutive, but they certainly exhibit considerable potential for different areas of biomaterials, as well as for advanced therapy medicinal and tissue engineering treatments.
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Affiliation(s)
- D. Campoccia
- Research Unit on Implant Infections, Rizzoli Orthopedic Institute, Bologna - Italy
| | - P. Speziale
- Department of Biochemistry, University of Pavia, Pavia - Italy
| | - Y.H. An
- Orthopedic Research Laboratory, Medical University of South Carolina, Charleston, South Carolina - USA
| | - J.L. Del Pozo
- Division of Infectious Diseases and Clinical Microbiology, University Clinic of Navarra, Pamplona - Spain
| | - L. Ceresa
- Pall Life Science, Pall Italia srl, Buccinasco - Italy
| | - F. Pegreffi
- Research Unit on Implant Infections, Rizzoli Orthopedic Institute, Bologna - Italy
| | - L. Montanaro
- Research Unit on Implant Infections, Rizzoli Orthopedic Institute, Bologna - Italy
- Department of Experimental Pathology, University of Bologna, Bologna - Italy
| | - C.R. Arciola
- Research Unit on Implant Infections, Rizzoli Orthopedic Institute, Bologna - Italy
- Department of Experimental Pathology, University of Bologna, Bologna - Italy
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31
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Siala M, Barbana A, Smaoui S, Hachicha S, Marouane C, Kammoun S, Gdoura R, Messadi-Akrout F. Screening and Detecting Salmonella in Different Food Matrices in Southern Tunisia Using a Combined Enrichment/Real-Time PCR Method: Correlation with Conventional Culture Method. Front Microbiol 2017; 8:2416. [PMID: 29270157 PMCID: PMC5725475 DOI: 10.3389/fmicb.2017.02416] [Citation(s) in RCA: 36] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2017] [Accepted: 11/22/2017] [Indexed: 11/13/2022] Open
Abstract
A combined enrichment/ newly developed invA TaqMan® real-time PCR (qPCR) method as a screening assay to detect Salmonella spp. in 500 naturally food matrices is evaluated. DNA template for qPCR was extracted from an overnight pre-enriched sample in buffered peptone water using lysis–guanidine isothiocyanate method. Heterologous internal amplification control (IAC) was incorporated during qPCR assays and co-amplified with the invA gene of the target pathogen. InvA qPCR exhibited 100% specificity when testing 94 Salmonella strains (inclusivity) and 32 non-Salmonella strains (exclusivity). The qPCR showed a consistent detection of two copies of the invA gene/PCR reaction, a good intra- and inter-run reproducibility with a good PCR efficiency (89.6%). QPCR was sensitive and showed Salmonella detection at 8.5 × 100 CFU mL-1 of artificially spiked poultry meat -BWP solution in less than 40 cycles. When analyzing 500 different food matrices and comparing the results with the ISO 6579:2002 conventional culture method, the sensitivity and specificity were 100 and 76.6%, respectively. QPCR showed Salmonella spp. DNA in raw poultry meat 27/45 (60%), milk 31/93 (33.3%), raw red meat 5/13 (38.5%), and fish 11/46 (23.9%) samples. The prevalence of Salmonella spp. in cakes, dairy, cooked meals, charcuterie products using qPCR was 11/14 (26.8%), 5/22 (22.7%), 32/150 (21.3%), and 5/20 (25%), respectively, compared to 0% as demonstrated by culture. S. Anatum was the most common serovar found associated with red meat compared to S. kentucky isolated from fish and poultry meat. In conclusion, our study is the first to use a combined enrichment/invA qPCR method as a screening assay to detect Salmonella DNA in different types of commercialized food in Southern Tunisia. QPCR results indicate that Salmonella contamination is common in milk and in other types of food samples.
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Affiliation(s)
- Mariam Siala
- Department of Biology, Preparatory Institute for Engineering Studies of Sfax, University of Sfax, Sfax, Tunisia.,Department of Life Sciences, Research Laboratory of Environmental Toxicology-Microbiology and Health (LR17ES06), Faculty of Sciences of Sfax, University of Sfax, Sfax, Tunisia
| | - Amina Barbana
- Department of Life Sciences, Research Laboratory of Environmental Toxicology-Microbiology and Health (LR17ES06), Faculty of Sciences of Sfax, University of Sfax, Sfax, Tunisia
| | - Salma Smaoui
- Regional Hygiene Care Laboratory, Department of Microbiology, Hedi-Chaker University Hospital, Sfax, Tunisia.,Department of Biology B, Faculty of Pharmacy of Monastir, University of Monastir, Monastir, Tunisia
| | - Salma Hachicha
- Regional Hygiene Care Laboratory, Department of Microbiology, Hedi-Chaker University Hospital, Sfax, Tunisia.,Department of Biology B, Faculty of Pharmacy of Monastir, University of Monastir, Monastir, Tunisia
| | - Chema Marouane
- Regional Hygiene Care Laboratory, Department of Microbiology, Hedi-Chaker University Hospital, Sfax, Tunisia.,Department of Biology B, Faculty of Pharmacy of Monastir, University of Monastir, Monastir, Tunisia
| | - Sana Kammoun
- Regional Hygiene Care Laboratory, Department of Microbiology, Hedi-Chaker University Hospital, Sfax, Tunisia.,Department of Biology B, Faculty of Pharmacy of Monastir, University of Monastir, Monastir, Tunisia
| | - Radhouane Gdoura
- Department of Life Sciences, Research Laboratory of Environmental Toxicology-Microbiology and Health (LR17ES06), Faculty of Sciences of Sfax, University of Sfax, Sfax, Tunisia
| | - Férièle Messadi-Akrout
- Regional Hygiene Care Laboratory, Department of Microbiology, Hedi-Chaker University Hospital, Sfax, Tunisia.,Department of Biology B, Faculty of Pharmacy of Monastir, University of Monastir, Monastir, Tunisia
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32
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Graphene-based label-free electrochemical aptasensor for rapid and sensitive detection of foodborne pathogen. Anal Bioanal Chem 2017; 409:6893-6905. [PMID: 29030671 DOI: 10.1007/s00216-017-0654-6] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2017] [Revised: 09/11/2017] [Accepted: 09/18/2017] [Indexed: 12/21/2022]
Abstract
Reduced graphene oxide (rGO) has emerged as a promising nanomaterial for reliable detection of pathogenic bacteria due to its exceptional properties such as ultrahigh electron transfer ability, large surface to volume ratio, biocompatibility, and its unique interactions with DNA bases of the aptamer. In this study, rGO-azophloxine (AP) nanocomposite aptasensor was developed for a sensitive, rapid, and robust detection of foodborne pathogens. Besides providing an excellent conductive and soluble rGO nanocomposite, the AP dye also acts as an electroactive indicator for redox reactions. The interaction of the label-free single-stranded deoxyribonucleic acid (ssDNA) aptamer with the test organism, Salmonella enterica serovar Typhimurium (S. Typhimurium), was monitored by differential pulse voltammetry analysis, and this aptasensor showed high sensitivity and selectivity for whole-cell bacteria detection. Under optimum conditions, this aptasensor exhibited a linear range of detection from 108 to 101 cfu mL-1 with good linearity (R 2 = 0.98) and a detection limit of 101 cfu mL-1. Furthermore, the developed aptasensor was evaluated with non-Salmonella bacteria and artificially spiked chicken food sample with S. Typhimurium. The results demonstrated that the rGO-AP aptasensor possesses high potential to be adapted for the effective and rapid detection of a specific foodborne pathogen by an electrochemical approach. Graphical abstract Fabrication of graphene-based nanocomposite aptasensor for detection of foodborne pathogen.
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Real-Time PCR Method for Detection of Salmonella spp. in Environmental Samples. Appl Environ Microbiol 2017; 83:AEM.00644-17. [PMID: 28500041 DOI: 10.1128/aem.00644-17] [Citation(s) in RCA: 63] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2017] [Accepted: 05/02/2017] [Indexed: 01/01/2023] Open
Abstract
The methods currently used for detecting Salmonella in environmental samples require 2 days to produce results and have limited sensitivity. Here, we describe the development and validation of a real-time PCR Salmonella screening method that produces results in 18 to 24 h. Primers and probes specific to the gene invA, group D, and Salmonella enterica serovar Enteritidis organisms were designed and evaluated for inclusivity and exclusivity using a panel of 329 Salmonella isolates representing 126 serovars and 22 non-Salmonella organisms. The invA- and group D-specific sets identified all the isolates accurately. The PCR method had 100% inclusivity and detected 1 to 2 copies of Salmonella DNA per reaction. Primers specific for Salmonella-differentiating fragment 1 (Sdf-1) in conjunction with the group D set had 100% inclusivity for 32 S Enteritidis isolates and 100% exclusivity for the 297 non-Enteritidis Salmonella isolates. Single-laboratory validation performed on 1,741 environmental samples demonstrated that the PCR method detected 55% more positives than the Vitek immunodiagnostic assay system (VIDAS) method. The PCR results correlated well with the culture results, and the method did not report any false-negative results. The receiver operating characteristic (ROC) analysis documented excellent agreement between the results from the culture and PCR methods (area under the curve, 0.90; 95% confidence interval of 0.76 to 1.0) confirming the validity of the PCR method.IMPORTANCE This validated PCR method detects 55% more positives for Salmonella in half the time required for the reference method, VIDAS. The validated PCR method will help to strengthen public health efforts through rapid screening of Salmonella spp. in environmental samples.
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Highmore CJ, Rothwell SD, Keevil CW. Improved sample preparation for direct quantitative detection of Escherichia coli O157 in soil using qPCR without pre-enrichment. Microb Biotechnol 2017; 10:969-976. [PMID: 28585286 PMCID: PMC5481516 DOI: 10.1111/1751-7915.12737] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2016] [Accepted: 04/29/2017] [Indexed: 12/01/2022] Open
Abstract
The prominence of fresh produce as a vehicle for foodborne pathogens such as enterohaemorrhagic Escherichia coli (EHEC) O157 is rising, where disease cases can cause hospitalization and in some cases death. This rise emphasises the necessity for accurate and sensitive methods for detection of pathogens in soil, potential sources of contamination of fresh produce. The complexity of the soil matrix has previously proven prohibitive to pathogen detection via molecular methods without the use of a culture enrichment step, thereby excluding the detection of viable but non-culturable cells. Here, a sample preparation procedure to facilitate a direct qPCR assay is developed for the detection of E. coli O157 in soil, bypassing culture steps in favour of sample separation through pulsification release and filtration. In sand and peat-based compost, the method is sensitive to 10 CFU g-1 soil. When testing soils from agricultural sites, it was found that several were qPCR positive for E. coli O157 while being culture-negative, with peat-based compost possessing a concentration of 200 tir gene copies per gram. This procedure offers a rapid, quantitative assessment of the potential presence of E. coli O157 in soils which can act as a prescreen of their suitability to grow fresh produce safely.
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Affiliation(s)
- Callum J Highmore
- Environmental Healthcare Unit, Faculty of Natural & Environmental Sciences, University of Southampton, Southampton, UK, SO17 1BJ
| | - Steve D Rothwell
- Vitacress Salads Ltd, Lower Link Farm, St Mary Bourne, Andover, UK, SP11 6DB
| | - Charles W Keevil
- Environmental Healthcare Unit, Faculty of Natural & Environmental Sciences, University of Southampton, Southampton, UK, SO17 1BJ
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Hyeon JY, Deng X. Rapid detection of Salmonella in raw chicken breast using real-time PCR combined with immunomagnetic separation and whole genome amplification. Food Microbiol 2017; 63:111-116. [DOI: 10.1016/j.fm.2016.11.007] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2016] [Revised: 11/11/2016] [Accepted: 11/15/2016] [Indexed: 01/30/2023]
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36
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Ku S, Kreke T, Ximenes E, Foster K, Liu X, Gilpin CJ, Ladisch MR. Protein particulate retention and microorganism recovery for rapid detection of
Salmonella. Biotechnol Prog 2017; 33:687-695. [DOI: 10.1002/btpr.2468] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2016] [Revised: 02/22/2017] [Indexed: 12/25/2022]
Affiliation(s)
- Seockmo Ku
- Laboratory of Renewable Resources EngineeringWest Lafayette IN47907‐2022
- Department of Agricultural and Biological EngineeringPurdue UniversityWest Lafayette IN47907‐2022
| | - Thomas Kreke
- Laboratory of Renewable Resources EngineeringWest Lafayette IN47907‐2022
| | - Eduardo Ximenes
- Laboratory of Renewable Resources EngineeringWest Lafayette IN47907‐2022
- Department of Agricultural and Biological EngineeringPurdue UniversityWest Lafayette IN47907‐2022
| | - Kirk Foster
- Weldon School of Biomedical EngineeringPurdue UniversityWest Lafayette IN47907‐2022
| | - Xingya Liu
- Laboratory of Renewable Resources EngineeringWest Lafayette IN47907‐2022
- Department of Agricultural and Biological EngineeringPurdue UniversityWest Lafayette IN47907‐2022
| | | | - Michael R. Ladisch
- Laboratory of Renewable Resources EngineeringWest Lafayette IN47907‐2022
- Department of Agricultural and Biological EngineeringPurdue UniversityWest Lafayette IN47907‐2022
- Weldon School of Biomedical EngineeringPurdue UniversityWest Lafayette IN47907‐2022
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37
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Fachmann MSR, Löfström C, Hoorfar J, Hansen F, Christensen J, Mansdal S, Josefsen MH. Detection of Salmonella enterica in Meat in Less than 5 Hours by a Low-Cost and Noncomplex Sample Preparation Method. Appl Environ Microbiol 2017; 83:e03151-16. [PMID: 27986726 PMCID: PMC5311390 DOI: 10.1128/aem.03151-16] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2016] [Accepted: 12/13/2016] [Indexed: 11/20/2022] Open
Abstract
Salmonella is recognized as one of the most important foodborne bacteria and has wide health and socioeconomic impacts worldwide. Fresh pork meat is one of the main sources of Salmonella, and efficient and fast methods for detection are therefore necessary. Current methods for Salmonella detection in fresh meat usually include >16 h of culture enrichment, in a few cases <12 h, thus requiring at least two working shifts. Here, we report a rapid (<5 h) and high-throughput method for screening of Salmonella in samples from fresh pork meat, consisting of a 3-h enrichment in standard buffered peptone water and a real-time PCR-compatible sample preparation method based on filtration, centrifugation, and enzymatic digestion, followed by fast-cycling real-time PCR detection. The method was validated in an unpaired comparative study against the Nordic Committee on Food Analysis (NMKL) reference culture method 187. Pork meat samples (n = 140) were either artificially contaminated with Salmonella at 0, 1 to 10, or 10 to 100 CFU/25 g of meat or naturally contaminated. Cohen's kappa for the degree of agreement between the rapid method and the reference was 0.64, and the relative accuracy, sensitivity, and specificity for the rapid method were 81.4, 95.1, and 97.9%, respectively. The 50% limit of detections (LOD50s) were 8.8 CFU/25 g for the rapid method and 7.7 CFU/25 g for the reference method. Implementation of this method will enable faster release of Salmonella low-risk meat, providing savings for meat producers, and it will help contribute to improved food safety.IMPORTANCE While the cost of analysis and hands-on time of the presented rapid method were comparable to those of reference culture methods, the fast product release by this method can provide the meat industry with a competitive advantage. Not only will the abattoirs save costs for work hours and cold storage, but consumers and retailers will also benefit from fresher meat with a longer shelf life. Furthermore, the presented sample preparation might be adjusted for application in the detection of other pathogenic bacteria in different sample types.
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Affiliation(s)
- M S R Fachmann
- National Food Institute, Technical University of Denmark, Søborg, Denmark
| | - C Löfström
- National Food Institute, Technical University of Denmark, Søborg, Denmark
| | - J Hoorfar
- National Food Institute, Technical University of Denmark, Søborg, Denmark
| | - F Hansen
- Danish Technological Institute, DMRI, Taastrup, Denmark
| | - J Christensen
- National Food Institute, Technical University of Denmark, Søborg, Denmark
| | - S Mansdal
- Danish Technological Institute, DMRI, Taastrup, Denmark
| | - M H Josefsen
- National Food Institute, Technical University of Denmark, Søborg, Denmark
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RAJASHEKHARA DB, FAIROZE MDNADEEM, KARABASANAVAR NAGAPPA, MADHAVAPRASAD CB, SHILPA AG, KOTRESH AM, BAGALKOTE PRASHANTHS, NADOOR PRAKASH. Molecular detection and antibiogram of virulent Salmonellae isolated from chicken meat. THE INDIAN JOURNAL OF ANIMAL SCIENCES 2017. [DOI: 10.56093/ijans.v87i2.67748] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/31/2023]
Abstract
Salmonella has emerged as one of the most common and frequent pathogen associated with the food poisoning. In the present study, a total of 240 chicken meat samples were collected from retail markets of Shivamogga region; where, 13 samples were found positive for Salmonella species by genus specific PCR targeting invA virulent gene, giving an overall prevalence of 5.4%. Retail outlets (slaughter-cum-retailing units) that traditionally processed chicken meat showed higher prevalence of 7.5% (n=120); whereas, retail chicken meat originated from organized abattoirs showed prevalence of 3.3% (n=120). Among traditional retail outlets, those retail units processing multiple animal species showed higher prevalence (8.3%, n=60) of Salmonella spp. compared to those that processed chicken meat alone (6.6%, n=60). All the Salmonella species (n=13) isolated from the chicken meat possessed virulence (invA) gene indicating their potential pathogenic mechanisms and also showed varying degree of susceptibility against common antimicrobials (multiple antibiotic resistance index of 0.1176 to 0.3529). High prevalence rate of Salmonella spp. has important public health concern and underscores a need for intense surveillance and monitoring of retail chicken meat and implementation of food quality assurance systems across the chicken supply chain.
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39
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Ku S, Ximenes E, Kreke T, Foster K, Deering AJ, Ladisch MR. Microfiltration of enzyme treated egg whites for accelerated detection of viable
Salmonella. Biotechnol Prog 2016; 32:1464-1471. [DOI: 10.1002/btpr.2343] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2016] [Revised: 08/04/2016] [Indexed: 11/08/2022]
Affiliation(s)
- Seockmo Ku
- Laboratory of Renewable Resources EngineeringPurdue UniversityWest Lafayette IN47907
- Dept. of Agricultural and Biological EngineeringPurdue UniversityWest Lafayette IN47907
| | - Eduardo Ximenes
- Laboratory of Renewable Resources EngineeringPurdue UniversityWest Lafayette IN47907
- Dept. of Agricultural and Biological EngineeringPurdue UniversityWest Lafayette IN47907
| | - Thomas Kreke
- Laboratory of Renewable Resources EngineeringPurdue UniversityWest Lafayette IN47907
| | - Kirk Foster
- Weldon School of Biomedical EngineeringPurdue UniversityWest Lafayette IN47907
| | | | - Michael R. Ladisch
- Laboratory of Renewable Resources EngineeringPurdue UniversityWest Lafayette IN47907
- Dept. of Agricultural and Biological EngineeringPurdue UniversityWest Lafayette IN47907
- Weldon School of Biomedical EngineeringPurdue UniversityWest Lafayette IN47907
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40
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Rahimi E, Shirazi F, Khamesipour F. Isolation and Study of the Antibiotic Resistance Properties ofShigellaSpecies in Meat and Meat Products. J FOOD PROCESS PRES 2016. [DOI: 10.1111/jfpp.12947] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Affiliation(s)
- Ebrahim Rahimi
- Department of Food Hygiene, Faculty of Veterinary Medicine, Shahrekord Branch; Islamic Azad University; Shahrekord Iran
| | - Farzaneh Shirazi
- Department of Food Science and Technology, Faculty of Agriculture, Shahrekord Branch; Islamic Azad University; Shahrekord Iran
| | - Faham Khamesipour
- Cellular and Molecular Research Center; Sabzevar University of Medical Sciences; Sabzevar Iran
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41
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Ngamsom B, Lopez-Martinez MJ, Raymond JC, Broyer P, Patel P, Pamme N. On-chip acoustophoretic isolation of microflora including S. typhimurium from raw chicken, beef and blood samples. J Microbiol Methods 2016; 123:79-86. [DOI: 10.1016/j.mimet.2016.01.016] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2015] [Revised: 01/29/2016] [Accepted: 01/29/2016] [Indexed: 10/22/2022]
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42
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Kim JY, Lee J. Rapid Detection of
Salmonella Enterica
Serovar Enteritidis from Eggs and Chicken Meat by Real‐Time Recombinase Polymerase Amplification in Comparison with the Two‐Step Real‐Time PCR. J Food Saf 2016. [DOI: 10.1111/jfs.12261] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Ji Yeun Kim
- Department of Human Ecology, Food Science and Biotechnology ProgramCollege of Agriculture and Related Sciences, Delaware State UniversityDover DE
| | - Jung‐Lim Lee
- Department of Human Ecology, Food Science and Biotechnology ProgramCollege of Agriculture and Related Sciences, Delaware State UniversityDover DE
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43
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Wang Y, Salazar JK. Culture-Independent Rapid Detection Methods for Bacterial Pathogens and Toxins in Food Matrices. Compr Rev Food Sci Food Saf 2015; 15:183-205. [DOI: 10.1111/1541-4337.12175] [Citation(s) in RCA: 161] [Impact Index Per Article: 17.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2015] [Accepted: 09/14/2015] [Indexed: 11/29/2022]
Affiliation(s)
- Yun Wang
- Div. of Food Processing Science and Technology; U.S. Food and Drug Administration; Bedford Park IL U.S.A
| | - Joelle K. Salazar
- Div. of Food Processing Science and Technology; U.S. Food and Drug Administration; Bedford Park IL U.S.A
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44
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Vibbert HB, Ku S, Li X, Liu X, Ximenes E, Kreke T, Ladisch MR, Deering AJ, Gehring AG. Accelerating sample preparation through enzyme-assisted microfiltration ofSalmonellain chicken extract. Biotechnol Prog 2015; 31:1551-62. [PMID: 26400739 DOI: 10.1002/btpr.2167] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2015] [Revised: 09/11/2015] [Indexed: 01/31/2023]
Affiliation(s)
- Hunter B. Vibbert
- Laboratory of Renewable Resources Engineering; Purdue University; West Lafayette IN 47907
- Dept. of Chemistry; Purdue University; West Lafayette IN 47907
| | - Seockmo Ku
- Laboratory of Renewable Resources Engineering; Purdue University; West Lafayette IN 47907
- Dept. of Agricultural and Biological Engineering; Purdue University; West Lafayette IN 47907
| | - Xuan Li
- Laboratory of Renewable Resources Engineering; Purdue University; West Lafayette IN 47907
- Dept. of Agricultural and Biological Engineering; Purdue University; West Lafayette IN 47907
| | - Xingya Liu
- Laboratory of Renewable Resources Engineering; Purdue University; West Lafayette IN 47907
- Dept. of Agricultural and Biological Engineering; Purdue University; West Lafayette IN 47907
| | - Eduardo Ximenes
- Laboratory of Renewable Resources Engineering; Purdue University; West Lafayette IN 47907
- Dept. of Agricultural and Biological Engineering; Purdue University; West Lafayette IN 47907
| | - Thomas Kreke
- Laboratory of Renewable Resources Engineering; Purdue University; West Lafayette IN 47907
- Dept. of Agricultural and Biological Engineering; Purdue University; West Lafayette IN 47907
- Weldon School of Biomedical Engineering; Purdue University; West Lafayette IN 47907
| | - Michael R. Ladisch
- Laboratory of Renewable Resources Engineering; Purdue University; West Lafayette IN 47907
- Dept. of Agricultural and Biological Engineering; Purdue University; West Lafayette IN 47907
- Weldon School of Biomedical Engineering; Purdue University; West Lafayette IN 47907
| | | | - Andrew G. Gehring
- US Department of Agriculture; Agricultural Research Service; Wyndmoor PA 19038
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45
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Hahm BK, Kim H, Singh AK, Bhunia AK. Pathogen enrichment device (PED) enables one-step growth, enrichment and separation of pathogen from food matrices for detection using bioanalytical platforms. J Microbiol Methods 2015. [DOI: 10.1016/j.mimet.2015.07.016] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
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46
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Real-Time TaqMan PCR for Rapid Detection and Quantification of Coliforms in Chilled Meat. FOOD ANAL METHOD 2015. [DOI: 10.1007/s12161-015-0271-y] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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47
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Nnadozie CF, Lin J, Govinden R. Selective isolation of bacteria for metagenomic analysis: Impact of membrane characteristics on bacterial filterability. Biotechnol Prog 2015; 31:853-66. [DOI: 10.1002/btpr.2109] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2015] [Revised: 05/20/2015] [Indexed: 01/22/2023]
Affiliation(s)
- Chika F. Nnadozie
- Biotechnology Cluster/Microbiology Discipline, School of Life Sciences; University of KwaZulu-Natal (Westville Campus), Private Bag X54001; Durban 4000, South Africa
| | - Johnson Lin
- Biotechnology Cluster/Microbiology Discipline, School of Life Sciences; University of KwaZulu-Natal (Westville Campus), Private Bag X54001; Durban 4000, South Africa
| | - Roshini Govinden
- Biotechnology Cluster/Microbiology Discipline, School of Life Sciences; University of KwaZulu-Natal (Westville Campus), Private Bag X54001; Durban 4000, South Africa
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48
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Makwana PP, Nayak JB, Brahmbhatt MN, Chaudhary JH. Detection of Salmonella spp. from chevon, mutton and its environment in retail meat shops in Anand city (Gujarat), India. Vet World 2015; 8:388-92. [PMID: 27047102 PMCID: PMC4774848 DOI: 10.14202/vetworld.2015.388-392] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2014] [Revised: 02/01/2015] [Accepted: 02/10/2015] [Indexed: 11/16/2022] Open
Abstract
AIM The aim of this study was (i) To attempt isolation and identification of Salmonella species from samples. (ii) Serotyping of Salmonella isolates. (iii) Detection of virulence factor associated genes by polymerase chain reaction (PCR). MATERIALS AND METHODS A total of 284 samples comprised of chevon and mutton (112 samples each) as well as 60 samples (20 each of retail meat shops environment samples viz. Butchers' hands, knives and log swabs) were collected from the retail meat shops in and around Anand City under aseptic precautions. Rappaport-vassiliadis soy bean meal broth and tetrathionate broth was used for the enrichment of all the samples and inoculation was done on brilliant green agar and xylose lysine deoxycholate agar. This was followed by the confirmation of isolates using biochemical tests. For the serotyping, isolates were sent to the National Salmonella and Escherichia Centre, Central Research Institute, Kasauli, Himachal Pradesh. Detection of virulence genes was performed by PCR technique using previously reported primer. RESULT Of 284 meats and retail meat shops environment samples, 13 (4.58%) samples were found positive for Salmonella. It was interesting to know that incidence of Salmonella was more in mutton (6.25%) than chevon (3.57%). In case of meat shop environmental samples 1 (5.00%) sample observed positive for Salmonella separately among the butchers' hands and knives swabs (Each of 20 samples) examined. Out of 13, eleven isolates detected as Salmonella Typhimurium, whereas only two isolates were detected as Salmonella Enteritidis. All Salmonella isolates possess invA and stn genes, whereas nine isolates had a presence of spvR gene while only five of the isolates revealed the presence of spvC gene as shown by in vitro detection of virulence genes by PCR. CONCLUSION Therefore, might be suggested that the good hygiene practices and effective control measures should be taken to encourage clean meat production with prolonged shelf-life.
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Affiliation(s)
- P P Makwana
- Department of Veterinary Public Health and Epidemiology, Anand Veterinary College, Anand Agricultural University, Anand, Gujarat, India
| | - J B Nayak
- Department of Veterinary Public Health and Epidemiology, Anand Veterinary College, Anand Agricultural University, Anand, Gujarat, India
| | - M N Brahmbhatt
- Department of Veterinary Public Health and Epidemiology, Anand Veterinary College, Anand Agricultural University, Anand, Gujarat, India
| | - J H Chaudhary
- Department of Veterinary Public Health and Epidemiology, Anand Veterinary College, Anand Agricultural University, Anand, Gujarat, India
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49
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Mendes Silva D, Domingues L. On the track for an efficient detection of Escherichia coli in water: A review on PCR-based methods. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2015; 113:400-11. [PMID: 25540852 DOI: 10.1016/j.ecoenv.2014.12.015] [Citation(s) in RCA: 49] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/29/2014] [Revised: 12/03/2014] [Accepted: 12/08/2014] [Indexed: 05/11/2023]
Abstract
Ensuring water safety is an ongoing challenge to public health providers. Assessing the presence of fecal contamination indicators in water is essential to protect public health from diseases caused by waterborne pathogens. For this purpose, the bacteria Escherichia coli has been used as the most reliable indicator of fecal contamination in water. The methods currently in use for monitoring the microbiological safety of water are based on culturing the microorganisms. However, these methods are not the desirable solution to prevent outbreaks as they provide the results with a considerable delay, lacking on specificity and sensitivity. Moreover, viable but non-culturable microorganisms, which may be present as a result of environmental stress or water treatment processes, are not detected by culture-based methods and, thus, may result in false-negative assessments of E. coli in water samples. These limitations may place public health at significant risk, leading to substantial monetary losses in health care and, additionally, in costs related with a reduced productivity in the area affected by the outbreak, and in costs supported by the water quality control departments involved. Molecular methods, particularly polymerase chain reaction-based methods, have been studied as an alternative technology to overcome the current limitations, as they offer the possibility to reduce the assay time, to improve the detection sensitivity and specificity, and to identify multiple targets and pathogens, including new or emerging strains. The variety of techniques and applications available for PCR-based methods has increased considerably and the costs involved have been substantially reduced, which together have contributed to the potential standardization of these techniques. However, they still require further refinement in order to be standardized and applied to the variety of environmental waters and their specific characteristics. The PCR-based methods under development for monitoring the presence of E. coli in water are here discussed. Special emphasis is given to methodologies that avoid pre-enrichment during the water sample preparation process so that the assay time is reduced and the required legislated sensitivity is achieved. The advantages and limitations of these methods are also reviewed, contributing to a more comprehensive overview toward a more conscious research in identifying E. coli in water.
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Affiliation(s)
- Diana Mendes Silva
- CEB-Centre of Biological Engineering, University of Minho, 4710-057 Braga, Portugal.
| | - Lucília Domingues
- CEB-Centre of Biological Engineering, University of Minho, 4710-057 Braga, Portugal.
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50
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Review of Salmonella detection and identification methods: Aspects of rapid emergency response and food safety. Food Control 2015. [DOI: 10.1016/j.foodcont.2014.07.011] [Citation(s) in RCA: 195] [Impact Index Per Article: 21.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
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