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Yan PF, Dong S, Woodcock MJ, Manz KE, Garza-Rubalcava U, Abriola LM, Pennell KD, Cápiro NL. Biotransformation of 6:2 fluorotelomer sulfonate and microbial community dynamics in water-saturated one-dimensional flow-through columns. WATER RESEARCH 2024; 252:121146. [PMID: 38306753 DOI: 10.1016/j.watres.2024.121146] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/31/2023] [Revised: 01/10/2024] [Accepted: 01/14/2024] [Indexed: 02/04/2024]
Abstract
Nearly all per- and polyfluoroalkyl substances (PFAS) biotransformation studies reported to date have been limited to laboratory-scale batch reactors. The fate and transport of PFAS in systems that more closely represent field conditions, i.e., in saturated porous media under flowing conditions, remain largely unexplored. This study investigated the biotransformation of 6:2 fluorotelomer sulfonate (6:2 FTS), a representative PFAS of widespread environmental occurrence, in one-dimensional water-saturated flow-through columns packed with soil obtained from a PFAS-contaminated site. The 305-day column experiments demonstrated that 6:2 FTS biotransformation was rate-limited, where a decrease in pore-water velocity from 3.7 to 2.4 cm/day, resulted in a 21.7-26.1 % decrease in effluent concentrations of 6:2 FTS and higher yields (1.0-1.4 mol% vs. 0.3 mol%) of late-stage biotransformation products (C4C7 perfluoroalkyl carboxylates). Flow interruptions (2 and 7 days) were found to enhance 6:2 FTS biotransformation during the 6-7 pore volumes following flow resumption. Model-fitted 6:2 FTS column biotransformation rates (0.039-0.041 cmw3/gs/d) were ∼3.5 times smaller than those observed in microcosms (0.137 cmw3/gs/d). Additionally, during column experiments, planktonic microbial communities remained relatively stable, whereas the composition of the attached microbial communities shifted along the flow path, which may have been attributed to oxygen availability and the toxicity of 6:2 FTS and associated biotransformation products. Genus Pseudomonas dominated in planktonic microbial communities, while in the attached microbial communities, Rhodococcus decreased and Pelotomaculum increased along the flow path, suggesting their potential involvement in early- and late-stage 6:2 FTS biotransformation, respectively. Overall, this study highlights the importance of incorporating realistic environmental conditions into experimental systems to obtain a more representative assessment of in-situ PFAS biotransformation.
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Affiliation(s)
- Peng-Fei Yan
- Department of Biological and Environmental Engineering, Cornell University, Ithaca, NY, United States.
| | - Sheng Dong
- Department of Biological and Environmental Engineering, Cornell University, Ithaca, NY, United States
| | | | - Katherine E Manz
- School of Public Health, University of Michigan, Ann Arbor, MI, United States
| | | | - Linda M Abriola
- School of Engineering, Brown University, Providence, RI, United States
| | - Kurt D Pennell
- School of Engineering, Brown University, Providence, RI, United States
| | - Natalie L Cápiro
- Department of Biological and Environmental Engineering, Cornell University, Ithaca, NY, United States.
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2
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Yan PF, Dong S, Manz KE, Woodcock MJ, Liu C, Mezzari MP, Abriola LM, Pennell KD, Cápiro NL. Aerobic biotransformation of 6:2 fluorotelomer sulfonate in soils from two aqueous film-forming foam (AFFF)-impacted sites. WATER RESEARCH 2024; 249:120941. [PMID: 38070347 DOI: 10.1016/j.watres.2023.120941] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/28/2023] [Revised: 11/14/2023] [Accepted: 11/28/2023] [Indexed: 01/03/2024]
Abstract
Although 6:2 fluorotelomer sulfonate (6:2 FTS) is a common ingredient in aqueous film-forming foam (AFFF) formulations, its environmental fate at AFFF-impacted sites remains poorly understood. This study investigated the biotransformation of 6:2 FTS in microcosms prepared with soils collected from two AFFF-impacted sites; the former Loring Air Force Base (AFB) and Robins AFB. The half-life of 6:2 FTS in Loring soil was 43.3 days; while >60 mol% of initially spiked 6:2 FTS remained in Robins soil microcosms after a 224-day incubation. Differences in initial sulfate concentrations and the depletion of sulfate over the incubation likely contributed to the different 6:2 FTS biotransformation rates between the two soils. At day 224, stable transformation products, i.e., C4C7 perfluoroalkyl carboxylates, were formed with combined molar yields of 13.8 mol% and 1.2 mol% in Loring and Robins soils, respectively. Based on all detected transformation products, the biotransformation pathways of 6:2 FTS in the two soils were proposed. Microbial community analysis suggests that Desulfobacterota microorganisms may promote 6:2 FTS biotransformation via more efficient desulfonation. In addition, species from the genus Sphingomonas, which exhibited higher tolerance to elevated concentrations of 6:2 FTS and its biotransformation products, are likely to have contributed to 6:2 FTS biotransformation. This study demonstrates the potential role of biotransformation processes on the fate of 6:2 FTS at AFFF-impacted sites and highlights the need to characterize site biogeochemical properties for improved assessment of 6:2 FTS biotransformation behavior.
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Affiliation(s)
- Peng-Fei Yan
- Department of Biological and Environmental Engineering, Cornell University, Ithaca, NY, USA.
| | - Sheng Dong
- Department of Biological and Environmental Engineering, Cornell University, Ithaca, NY, USA
| | | | | | - Chen Liu
- School of Engineering, Brown University, Providence, RI, USA
| | - Melissa P Mezzari
- Department of Molecular Virology and Microbiology, Baylor College of Medicine, Houston, TX, USA
| | - Linda M Abriola
- School of Engineering, Brown University, Providence, RI, USA
| | - Kurt D Pennell
- School of Engineering, Brown University, Providence, RI, USA
| | - Natalie L Cápiro
- Department of Biological and Environmental Engineering, Cornell University, Ithaca, NY, USA.
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3
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Zhou H, Yin H, Guo Z, Zhu M, Qi X, Dang Z. Methanol promotes the biodegradation of 2,2',3,4,4',5,5'-heptachlorobiphenyl (PCB 180) by the microbial consortium QY2: Metabolic pathways, toxicity evaluation and community response. CHEMOSPHERE 2023; 322:138206. [PMID: 36828105 DOI: 10.1016/j.chemosphere.2023.138206] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/29/2022] [Revised: 12/24/2022] [Accepted: 02/20/2023] [Indexed: 06/18/2023]
Abstract
As one of the most frequently detected PCB congeners in human adipose tissue, 2,2',3,4,4',5,5'-heptachlorobiphenyl (PCB 180) has attracted much attention. However, PCB 180 is difficult to be directly utilized by microorganisms due to its hydrophobicity and obstinacy. Herein, methanol (5 mM) as a co-metabolic carbon source significantly stimulated the degradation performance of microbial consortium QY2 for PCB 180 (51.9% higher than that without methanol addition). Six metabolic products including low-chlorinated PCBs and chlorobenzoic acid were identified during co-metabolic degradation, denoting that PCB 180 was metabolized via dechlorination, hydroxylation and ring-opening pathways. The oxidative stress and apoptosis induced by PCB 180 were dose-dependent, but the addition of methanol effectively promoted the tolerance of consortium QY2 to resist unfavorable environmental stress. Additionally, the significant reduction of intracellular reactive oxygen species (ROS) and enhancement of cell viability during methanol co-metabolic degradation proved that the degradation was a detoxification process. The microbial community and network analyses suggested that the potential PCB 180 degrading bacteria in the community (e.g., Achromobacter, Cupriavidus, Methylobacterium and Sphingomonas) and functional abundance of metabolic pathways were selectively enriched by methanol, and the synergies among species whose richness increased after methanol addition might dominate the degradation process. These findings provide new insights into the biodegradation of PCB 180 by microbial consortium.
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Affiliation(s)
- Heyang Zhou
- School of Environment and Energy, South China University of Technology, Guangzhou, 510006, China
| | - Hua Yin
- School of Environment and Energy, South China University of Technology, Guangzhou, 510006, China; Key Laboratory of Ministry of Education on Pollution Control and Ecosystem Restoration in Industry Clusters, Guangzhou, 510006, China; Guangdong Provincial Key Laboratory of Solid Wastes Pollution Control and Recycling, Guangzhou, 510006, China.
| | - Zhanyu Guo
- School of Environment and Energy, South China University of Technology, Guangzhou, 510006, China
| | - Minghan Zhu
- School of Environment and Energy, South China University of Technology, Guangzhou, 510006, China
| | - Xin Qi
- School of Environment and Energy, South China University of Technology, Guangzhou, 510006, China
| | - Zhi Dang
- School of Environment and Energy, South China University of Technology, Guangzhou, 510006, China; Key Laboratory of Ministry of Education on Pollution Control and Ecosystem Restoration in Industry Clusters, Guangzhou, 510006, China; Guangdong Provincial Key Laboratory of Solid Wastes Pollution Control and Recycling, Guangzhou, 510006, China
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4
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Gribble GW. Naturally Occurring Organohalogen Compounds-A Comprehensive Review. PROGRESS IN THE CHEMISTRY OF ORGANIC NATURAL PRODUCTS 2023; 121:1-546. [PMID: 37488466 DOI: 10.1007/978-3-031-26629-4_1] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/26/2023]
Abstract
The present volume is the third in a trilogy that documents naturally occurring organohalogen compounds, bringing the total number-from fewer than 25 in 1968-to approximately 8000 compounds to date. Nearly all of these natural products contain chlorine or bromine, with a few containing iodine and, fewer still, fluorine. Produced by ubiquitous marine (algae, sponges, corals, bryozoa, nudibranchs, fungi, bacteria) and terrestrial organisms (plants, fungi, bacteria, insects, higher animals) and universal abiotic processes (volcanos, forest fires, geothermal events), organohalogens pervade the global ecosystem. Newly identified extraterrestrial sources are also documented. In addition to chemical structures, biological activity, biohalogenation, biodegradation, natural function, and future outlook are presented.
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Affiliation(s)
- Gordon W Gribble
- Department of Chemistry, Dartmouth College, Hanover, NH, 03755, USA.
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5
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Yan PF, Dong S, Manz KE, Liu C, Woodcock MJ, Mezzari MP, Abriola LM, Pennell KD, Cápiro NL. Biotransformation of 8:2 Fluorotelomer Alcohol in Soil from Aqueous Film-Forming Foams (AFFFs)-Impacted Sites under Nitrate-, Sulfate-, and Iron-Reducing Conditions. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2022; 56:13728-13739. [PMID: 36127292 DOI: 10.1021/acs.est.2c03669] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
The environmental fate of per- and polyfluoroalkyl substances (PFAS) in aqueous film-forming foams (AFFFs) remains largely unknown, especially under the conditions representative of natural subsurface systems. In this study, the biotransformation of 8:2 fluorotelomer alcohol (8:2 FTOH), a component of new-generation AFFF formulations and a byproduct in fluorotelomer-based AFFFs, was investigated under nitrate-, iron-, and sulfate-reducing conditions in microcosms prepared with AFFF-impacted soils. Liquid chromatography-tandem mass spectrometry (LC-MS/MS) and high-resolution mass spectrometry (HRMS) were employed to identify biotransformation products. The biotransformation was much slower under sulfate- and iron-reducing conditions with >60 mol % of initial 8:2 FTOH remaining after ∼400 days compared to a half-life ranging from 12.5 to 36.5 days under nitrate-reducing conditions. Transformation products 8:2 fluorotelomer saturated and unsaturated carboxylic acids (8:2 FTCA and 8:2 FTUA) were detected under all redox conditions, while 7:2 secondary fluorotelomer alcohol (7:2 sFTOH) and perfluorooctanoic acid (PFOA) were only observed as transformation products under nitrate-reducing conditions. In addition, 1H-perfluoroheptane (F(CF2)6CF2H) and 3-F-7:3 acid (F(CF2)7CFHCH2COOH) were identified for the first time during 8:2 FTOH biotransformation. Comprehensive biotransformation pathways for 8:2 FTOH are presented, which highlight the importance of accounting for redox condition and the related microbial community in the assessment of PFAS transformations in natural environments.
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Affiliation(s)
- Peng-Fei Yan
- Department of Civil and Environmental Engineering, Auburn University, Auburn, Alabama 36849, United States
| | - Sheng Dong
- Department of Civil and Environmental Engineering, Auburn University, Auburn, Alabama 36849, United States
| | - Katherine E Manz
- School of Engineering, Brown University, Providence, Rhode Island 02912, United States
| | - Chen Liu
- School of Engineering, Brown University, Providence, Rhode Island 02912, United States
| | - Matthew J Woodcock
- School of Engineering, Brown University, Providence, Rhode Island 02912, United States
| | - Melissa P Mezzari
- Department of Molecular Virology and Microbiology, Baylor College of Medicine, Houston, Texas 77030-3411, United States
| | - Linda M Abriola
- School of Engineering, Brown University, Providence, Rhode Island 02912, United States
| | - Kurt D Pennell
- School of Engineering, Brown University, Providence, Rhode Island 02912, United States
| | - Natalie L Cápiro
- Department of Civil and Environmental Engineering, Auburn University, Auburn, Alabama 36849, United States
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6
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OUP accepted manuscript. FEMS Microbiol Ecol 2022; 98:6577122. [DOI: 10.1093/femsec/fiac054] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2021] [Revised: 04/07/2022] [Accepted: 04/29/2022] [Indexed: 11/13/2022] Open
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7
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Temme HR, Carlson A, Novak PJ. Presence, Diversity, and Enrichment of Respiratory Reductive Dehalogenase and Non-respiratory Hydrolytic and Oxidative Dehalogenase Genes in Terrestrial Environments. Front Microbiol 2019; 10:1258. [PMID: 31231342 PMCID: PMC6567934 DOI: 10.3389/fmicb.2019.01258] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2019] [Accepted: 05/21/2019] [Indexed: 11/13/2022] Open
Abstract
Organohalide-respiring bacteria have been linked to the cycling and possible respiration of chlorinated natural organic matter (Cl-NOM) in uncontaminated soils and sediments. The importance of non-respiratory hydrolytic/oxidative dechlorination processes in the cycling of Cl-NOM in terrestrial soil and sediment, however, is still not understood. This research analyzes the dechlorination potential of terrestrial systems through analysis of the metagenomes of urban lake sediments and cultures enriched with Cl-NOM. Even with the variability in sample type and enrichment conditions, the potential to dechlorinate was universal, with reductive dehalogenase genes and hydrolytic or oxidative dehalogenase genes found in all samples analyzed. The reductive dehalogenase genes detected grouped taxonomically with those from organohalide-respiring bacteria with broad metabolic capabilities, as opposed to those that obligately respire organohalides. Furthermore, reductive dehalogenase genes and two haloacid dehalogenase genes increased in abundance when sediment was enriched with high concentrations of Cl-NOM. Our data suggests that both respiratory and non-respiratory dechlorination processes are important for Cl-NOM cycling, and that non-obligate organohalide-respiring bacteria are most likely involved in these processes.
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Affiliation(s)
- Hanna R Temme
- Department of Civil, Environmental, and Geo- Engineering, University of Minnesota, Minneapolis, MN, United States
| | - Aaron Carlson
- Department of Civil, Environmental, and Geo- Engineering, University of Minnesota, Minneapolis, MN, United States
| | - Paige J Novak
- Department of Civil, Environmental, and Geo- Engineering, University of Minnesota, Minneapolis, MN, United States
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8
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Atashgahi S, Häggblom MM, Smidt H. Organohalide respiration in pristine environments: implications for the natural halogen cycle. Environ Microbiol 2017; 20:934-948. [PMID: 29215190 DOI: 10.1111/1462-2920.14016] [Citation(s) in RCA: 52] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2017] [Revised: 11/29/2017] [Accepted: 12/01/2017] [Indexed: 11/29/2022]
Abstract
Halogenated organic compounds, also termed organohalogens, were initially considered to be of almost exclusively anthropogenic origin. However, over 5000 naturally synthesized organohalogens are known today. This has also fuelled the hypothesis that the natural and ancient origin of organohalogens could have primed development of metabolic machineries for their degradation, especially in microorganisms. Among these, a special group of anaerobic microorganisms was discovered that could conserve energy by reducing organohalogens as terminal electron acceptor in a process termed organohalide respiration. Originally discovered in a quest for biodegradation of anthropogenic organohalogens, these organohalide-respiring bacteria (OHRB) were soon found to reside in pristine environments, such as the deep subseafloor and Arctic tundra soil with limited/no connections to anthropogenic activities. As such, accumulating evidence suggests an important role of OHRB in local natural halogen cycles, presumably taking advantage of natural organohalogens. In this minireview, we integrate current knowledge regarding the natural origin and occurrence of industrially important organohalogens and the evolution and spread of OHRB, and describe potential implications for natural halogen and carbon cycles.
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Affiliation(s)
- Siavash Atashgahi
- Laboratory of Microbiology, Wageningen University & Research, Stippeneng 4, Wageningen 6708 WE, The Netherlands
| | - Max M Häggblom
- Department of Biochemistry and Microbiology, School of Environmental and Biological Sciences, Rutgers, The State University of New Jersey, New Brunswick, NJ, 08901, USA
| | - Hauke Smidt
- Laboratory of Microbiology, Wageningen University & Research, Stippeneng 4, Wageningen 6708 WE, The Netherlands
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9
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Zhang S, Merino N, Wang N, Ruan T, Lu X. Impact of 6:2 fluorotelomer alcohol aerobic biotransformation on a sediment microbial community. THE SCIENCE OF THE TOTAL ENVIRONMENT 2017; 575:1361-1368. [PMID: 27756549 DOI: 10.1016/j.scitotenv.2016.09.214] [Citation(s) in RCA: 44] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/13/2016] [Revised: 09/26/2016] [Accepted: 09/27/2016] [Indexed: 06/06/2023]
Abstract
Sediment microbial communities are responsible for many chemical biotransformation processes in the aquatic environment and play a critical role in various ecosystems and biogeochemical cycling. However, the impact of polyfluoroalkyl substances on sediment microbial communities remains unclear. These substances are increasingly being used in consumer and industrial products to replace environmentally persistent perfluoroalkyl substances. In this study, we investigated the effects of low (5mg/L) and high (15mg/L) doses of 6:2 fluorotelomer alcohol [6:2 FTOH, F(CF2)6CH2CH2OH] on the structure of a sediment microbial community. 6:2 FTOH biotransformation was rapid in the sediment mixture with a half-life <3days, regardless of the initial doses. After 28days, major products produced in the high dose condition included 28mol% 5:2 sFTOH [F(CF2)5CH(OH)CH3], 9.6mol% 5:3 Acid [F(CF2)5CH2CH2COOH] and 11mol% PFHxA [F(CF2)5COOH], while 73mol% 5:2 sFTOH, 23mol% 5:3 Acid and 26mol% PFHxA were observed in the low dose condition. In the original (control) sediment without 6:2 FTOH dosing, Proteobacteria was the predominant microorganism (18%), followed by Chloroflexi (14%), Verrucomicrobia (13%), Firmicutes (3.4%), Bacterioidetes (2.4%), Actinobacteria (1.7%) and Planctomycetes (1.3%). The presence of 6:2 FTOH and the accumulation of transient transformation products in the sediment exerted selection pressure on the microbial taxonomic distribution and diversity. Our observations indicate that potential 6:2 FTOH degraders and tolerant strains, such as Dokdonella spp., Thauera spp., Albidovulum spp. and Caldanaerovirga spp., existed in the sediment mixture and began to dominate over time. This suggests that these genera might have higher tolerance towards elevated 6:2 FTOH and its transformation products. These findings on the characterization of sediment microbial community stability and dynamics will help predict changes in response to perfluoroalkyl and polyfluoroalkyl substances and also help identify robust microbial strains to degrade polyfluoroalkyl substances in the environment.
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Affiliation(s)
- Shu Zhang
- Laboratory for Earth Surface Processes, Ministry of Education, College of Urban and Environmental Sciences, Peking University, Beijing 100871, China
| | - Nancy Merino
- Earth-Life Science Institute, Tokyo Institute of Technology, Ookayama, Meguro-ku, Tokyo 152-8550, Japan
| | - Ning Wang
- 132 Shrewsbury Dr., Wilmington, DE 19810, USA.
| | - Ting Ruan
- State Key Laboratory of Environmental Chemistry and Ecotoxicology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China.
| | - Xiaoxia Lu
- Laboratory for Earth Surface Processes, Ministry of Education, College of Urban and Environmental Sciences, Peking University, Beijing 100871, China.
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10
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Le Pogam P, Boustie J. Xanthones of Lichen Source: A 2016 Update. Molecules 2016; 21:294. [PMID: 26950106 PMCID: PMC6273661 DOI: 10.3390/molecules21030294] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2016] [Revised: 02/21/2016] [Accepted: 02/23/2016] [Indexed: 11/23/2022] Open
Abstract
An update of xanthones encountered in lichens is proposed as more than 20 new xanthones have been described since the publication of the compendium of lichen metabolites by Huneck and Yoshimura in 1996. The last decades witnessed major advances regarding the elucidation of biosynthetic schemes leading to these fascinating compounds, accounting for the unique substitution patterns of a very vast majority of lichen xanthones. Besides a comprehensive analysis of the structures of xanthones described in lichens, their bioactivities and the emerging analytical strategies used to pinpoint them within lichens are presented here together with physico-chemical properties (including NMR data) as reported since 1996.
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Affiliation(s)
- Pierre Le Pogam
- Laboratoire de Pharmacognosie, Equipe PNSCM, (ISCR UMR CNRS 6226), Faculté des Sciences Pharmaceutiques et Biologiques, 2 Avenue du Professeur Léon Bernard, 35043, Rennes Cédex, France.
| | - Joël Boustie
- Laboratoire de Pharmacognosie, Equipe PNSCM, (ISCR UMR CNRS 6226), Faculté des Sciences Pharmaceutiques et Biologiques, 2 Avenue du Professeur Léon Bernard, 35043, Rennes Cédex, France.
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11
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Biderre-Petit C, Dugat-Bony E, Mege M, Parisot N, Adrian L, Moné A, Denonfoux J, Peyretaillade E, Debroas D, Boucher D, Peyret P. Distribution of Dehalococcoidia in the Anaerobic Deep Water of a Remote Meromictic Crater Lake and Detection of Dehalococcoidia-Derived Reductive Dehalogenase Homologous Genes. PLoS One 2016; 11:e0145558. [PMID: 26734727 PMCID: PMC4703385 DOI: 10.1371/journal.pone.0145558] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2015] [Accepted: 12/04/2015] [Indexed: 12/29/2022] Open
Abstract
Here we describe the natural occurrence of bacteria of the class Dehalococcoidia (DEH) and their diversity at different depths in anoxic waters of a remote meromictic lake (Lake Pavin) using 16S rRNA gene amplicon sequencing and quantitative PCR. Detected DEH are phylogenetically diverse and the majority of 16S rRNA sequences have less than 91% similarity to previously isolated DEH 16S rRNA sequences. To predict the metabolic potential of detected DEH subgroups and to assess if they encode genes to transform halogenated compounds, we enriched DEH-affiliated genomic DNA by using a specific-gene capture method and probes against DEH-derived 16S rRNA genes, reductive dehalogenase genes and known insertion sequences. Two reductive dehalogenase homologous sequences were identified from DEH-enriched genomic DNA, and marker genes in the direct vicinity confirm that gene fragments were derived from DEH. The low sequence similarity with known reductive dehalogenase genes suggests yet-unknown catabolic potential in the anoxic zone of Lake Pavin.
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Affiliation(s)
- Corinne Biderre-Petit
- Laboratoire “Microorganismes: Génome et Environnement,” Clermont Université, Université Blaise Pascal, F-63000, Clermont-Ferrand, France
- Laboratoire Microorganismes, Génome et Environnement, Centre National de la Recherche Scientifique (CNRS), Unité Mixte de Recherche (UMR) 6023, F-63171, Aubière, France
- * E-mail:
| | - Eric Dugat-Bony
- UMR GMPA, AgroParisTech, INRA, Université Paris-Saclay, 78850, Thiverval-Grignon, France
| | - Mickaël Mege
- Laboratoire “Microorganismes: Génome et Environnement,” Clermont Université, Université Blaise Pascal, F-63000, Clermont-Ferrand, France
- Laboratoire Microorganismes, Génome et Environnement, Centre National de la Recherche Scientifique (CNRS), Unité Mixte de Recherche (UMR) 6023, F-63171, Aubière, France
| | - Nicolas Parisot
- Laboratoire “Microorganismes: Génome et Environnement,” Clermont Université, Université Blaise Pascal, F-63000, Clermont-Ferrand, France
- Laboratoire Microorganismes, Génome et Environnement, Centre National de la Recherche Scientifique (CNRS), Unité Mixte de Recherche (UMR) 6023, F-63171, Aubière, France
- Clermont Université, Université d’Auvergne, EA 4678 CIDAM, BP 10448, F-63001, Clermont-Ferrand, France
| | - Lorenz Adrian
- Helmholtz Centre for Environmental Research–UFZ, Permoserstraße 15, D-04318, Leipzig, Germany
| | - Anne Moné
- Laboratoire “Microorganismes: Génome et Environnement,” Clermont Université, Université Blaise Pascal, F-63000, Clermont-Ferrand, France
- Laboratoire Microorganismes, Génome et Environnement, Centre National de la Recherche Scientifique (CNRS), Unité Mixte de Recherche (UMR) 6023, F-63171, Aubière, France
| | - Jérémie Denonfoux
- Clermont Université, Université d’Auvergne, EA 4678 CIDAM, BP 10448, F-63001, Clermont-Ferrand, France
| | - Eric Peyretaillade
- Clermont Université, Université d’Auvergne, EA 4678 CIDAM, BP 10448, F-63001, Clermont-Ferrand, France
| | - Didier Debroas
- Laboratoire “Microorganismes: Génome et Environnement,” Clermont Université, Université Blaise Pascal, F-63000, Clermont-Ferrand, France
- Laboratoire Microorganismes, Génome et Environnement, Centre National de la Recherche Scientifique (CNRS), Unité Mixte de Recherche (UMR) 6023, F-63171, Aubière, France
| | - Delphine Boucher
- Clermont Université, Université d’Auvergne, EA 4678 CIDAM, BP 10448, F-63001, Clermont-Ferrand, France
| | - Pierre Peyret
- Clermont Université, Université d’Auvergne, EA 4678 CIDAM, BP 10448, F-63001, Clermont-Ferrand, France
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12
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Smith BJ, Boothe MA, Fiddler BA, Lozano TM, Rahi RK, Krzmarzick MJ. Enumeration of Organohalide Respirers in Municipal Wastewater Anaerobic Digesters. Microbiol Insights 2015; 8:9-14. [PMID: 26508873 PMCID: PMC4607082 DOI: 10.4137/mbi.s31445] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2015] [Revised: 09/10/2015] [Accepted: 09/15/2015] [Indexed: 01/01/2023] Open
Abstract
Organohalide contaminants such as triclosan and triclocarban have been well documented in municipal wastewater treatment plants (WWTPs), but the degradation of these contaminants is not well understood. One possible removal mechanism is organohalide respiration by which bacteria reduce the halogenated compound. The purpose of this study was to determine the abundance of organohalide-respiring bacteria in eight WWTP anaerobic digesters. The obligate organohalide respiring Dehalococcoides mccartyi was the most abundant and averaged 3.3 × 107 copies of 16S rRNA genes per gram, while the Dehalobacter was much lower at 2.6 × 104 copies of 16S rRNA genes per gram. The genus Sulfurospirillum spp. was also detected at 1.0 × 107 copies of 16S rRNA genes per gram. No other known or putatively organohalide-respiring strains in the Dehalococcoidaceae family were found to be present nor were the genera Desulfitobacterium or Desulfomonile.
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Affiliation(s)
- Bryan Jk Smith
- School of Civil and Environmental Engineering, College of Engineering, Architecture and Technology, Oklahoma State University, Stillwater, OK, USA
| | - Melissa A Boothe
- School of Civil and Environmental Engineering, College of Engineering, Architecture and Technology, Oklahoma State University, Stillwater, OK, USA
| | - Brice A Fiddler
- School of Civil and Environmental Engineering, College of Engineering, Architecture and Technology, Oklahoma State University, Stillwater, OK, USA
| | - Tania M Lozano
- School of Civil and Environmental Engineering, College of Engineering, Architecture and Technology, Oklahoma State University, Stillwater, OK, USA
| | - Russel K Rahi
- School of Civil and Environmental Engineering, College of Engineering, Architecture and Technology, Oklahoma State University, Stillwater, OK, USA
| | - Mark J Krzmarzick
- School of Civil and Environmental Engineering, College of Engineering, Architecture and Technology, Oklahoma State University, Stillwater, OK, USA
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Complete Genome Sequence of Pelosinus fermentans JBW45, a Member of a Remarkably Competitive Group of Negativicutes in the Firmicutes Phylum. GENOME ANNOUNCEMENTS 2015; 3:3/5/e01090-15. [PMID: 26404608 PMCID: PMC4582584 DOI: 10.1128/genomea.01090-15] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
The genome of Pelosinus fermentans JBW45, isolated from a chromium-contaminated site in Hanford, Washington, USA, has been completed with PacBio sequencing. Nine copies of the rRNA gene operon and multiple transposase genes with identical sequences resulted in breaks in the original draft genome and may suggest genomic instability of JBW45.
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Krzmarzick MJ, Novak PJ. Removal of chlorinated organic compounds during wastewater treatment: achievements and limits. Appl Microbiol Biotechnol 2014; 98:6233-42. [DOI: 10.1007/s00253-014-5800-x] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2014] [Revised: 04/25/2014] [Accepted: 04/28/2014] [Indexed: 11/29/2022]
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