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For: Sekar R, Fuchs BM, Amann R, Pernthaler J. Flow sorting of marine bacterioplankton after fluorescence in situ hybridization. Appl Environ Microbiol 2004;70:6210-9. [PMID: 15466568 PMCID: PMC522093 DOI: 10.1128/aem.70.10.6210-6219.2004] [Citation(s) in RCA: 94] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
Number Cited by Other Article(s)
1
Layoun P, López-Pérez M, Haro-Moreno JM, Haber M, Thrash JC, Henson MW, Kavagutti VS, Ghai R, Salcher MM. Flexible genomic island conservation across freshwater and marine Methylophilaceae. THE ISME JOURNAL 2024;18:wrad036. [PMID: 38365254 PMCID: PMC10872708 DOI: 10.1093/ismejo/wrad036] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/12/2023] [Revised: 12/15/2023] [Accepted: 12/20/2023] [Indexed: 02/18/2024]
2
Dungan AM, Tandon K, Jameson V, Gotze CR, Blackall LL, van Oppen MJH. A targeted approach to enrich host-associated bacteria for metagenomic sequencing. FEMS MICROBES 2023;5:xtad021. [PMID: 38264162 PMCID: PMC10804224 DOI: 10.1093/femsmc/xtad021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2023] [Revised: 11/02/2023] [Accepted: 11/27/2023] [Indexed: 01/25/2024]  Open
3
Pereira AC, Tenreiro A, Cunha MV. When FLOW-FISH met FACS: Combining multiparametric, dynamic approaches for microbial single-cell research in the total environment. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022;806:150682. [PMID: 34600998 DOI: 10.1016/j.scitotenv.2021.150682] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/14/2021] [Revised: 09/22/2021] [Accepted: 09/26/2021] [Indexed: 06/13/2023]
4
Zand E, Froehling A, Schoenher C, Zunabovic-Pichler M, Schlueter O, Jaeger H. Potential of Flow Cytometric Approaches for Rapid Microbial Detection and Characterization in the Food Industry-A Review. Foods 2021;10:3112. [PMID: 34945663 PMCID: PMC8701031 DOI: 10.3390/foods10123112] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2021] [Revised: 11/14/2021] [Accepted: 11/16/2021] [Indexed: 12/11/2022]  Open
5
Genus-Specific Carbon Fixation Activity Measurements Reveal Distinct Responses to Oxygen Among Hydrothermal Vent Campylobacteria. Appl Environ Microbiol 2021;88:e0208321. [PMID: 34788061 DOI: 10.1128/aem.02083-21] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
6
Oyewusi HA, Wahab RA, Huyop F. Whole genome strategies and bioremediation insight into dehalogenase-producing bacteria. Mol Biol Rep 2021;48:2687-2701. [PMID: 33650078 DOI: 10.1007/s11033-021-06239-7] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2020] [Accepted: 02/16/2021] [Indexed: 12/11/2022]
7
Pin L, Eiler A, Fazi S, Friberg N. Two different approaches of microbial community structure characterization in riverine epilithic biofilms under multiple stressors conditions: Developing molecular indicators. Mol Ecol Resour 2021;21:1200-1215. [PMID: 33529477 DOI: 10.1111/1755-0998.13341] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2020] [Revised: 01/25/2021] [Accepted: 01/26/2021] [Indexed: 01/04/2023]
8
Thompson HF, Summers S, Yuecel R, Gutierrez T. Hydrocarbon-Degrading Bacteria Found Tightly Associated with the 50-70 μm Cell-Size Population of Eukaryotic Phytoplankton in Surface Waters of a Northeast Atlantic Region. Microorganisms 2020;8:microorganisms8121955. [PMID: 33317100 PMCID: PMC7763645 DOI: 10.3390/microorganisms8121955] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2020] [Revised: 11/30/2020] [Accepted: 12/03/2020] [Indexed: 11/17/2022]  Open
9
phyloFlash: Rapid Small-Subunit rRNA Profiling and Targeted Assembly from Metagenomes. mSystems 2020;5:5/5/e00920-20. [PMID: 33109753 PMCID: PMC7593591 DOI: 10.1128/msystems.00920-20] [Citation(s) in RCA: 121] [Impact Index Per Article: 30.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]  Open
10
Messer LF, Ostrowski M, Doblin MA, Petrou K, Baird ME, Ingleton T, Bissett A, Van de Kamp J, Nelson T, Paulsen I, Bodrossy L, Fuhrman JA, Seymour JR, Brown MV. Microbial tropicalization driven by a strengthening western ocean boundary current. GLOBAL CHANGE BIOLOGY 2020;26:5613-5629. [PMID: 32715608 DOI: 10.1111/gcb.15257] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/12/2020] [Revised: 04/22/2020] [Accepted: 06/09/2020] [Indexed: 06/11/2023]
11
Microbial single-cell omics: the crux of the matter. Appl Microbiol Biotechnol 2020;104:8209-8220. [PMID: 32845367 PMCID: PMC7471194 DOI: 10.1007/s00253-020-10844-0] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2020] [Revised: 08/08/2020] [Accepted: 08/17/2020] [Indexed: 01/10/2023]
12
Grieb A, Bowers RM, Oggerin M, Goudeau D, Lee J, Malmstrom RR, Woyke T, Fuchs BM. A pipeline for targeted metagenomics of environmental bacteria. MICROBIOME 2020;8:21. [PMID: 32061258 PMCID: PMC7024552 DOI: 10.1186/s40168-020-0790-7] [Citation(s) in RCA: 32] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/23/2019] [Accepted: 01/19/2020] [Indexed: 05/19/2023]
13
Batani G, Bayer K, Böge J, Hentschel U, Thomas T. Fluorescence in situ hybridization (FISH) and cell sorting of living bacteria. Sci Rep 2019;9:18618. [PMID: 31819112 PMCID: PMC6901588 DOI: 10.1038/s41598-019-55049-2] [Citation(s) in RCA: 55] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2019] [Accepted: 11/21/2019] [Indexed: 01/09/2023]  Open
14
Salcher MM, Schaefle D, Kaspar M, Neuenschwander SM, Ghai R. Evolution in action: habitat transition from sediment to the pelagial leads to genome streamlining in Methylophilaceae. THE ISME JOURNAL 2019;13:2764-2777. [PMID: 31292537 PMCID: PMC6794327 DOI: 10.1038/s41396-019-0471-3] [Citation(s) in RCA: 60] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/18/2019] [Revised: 06/14/2019] [Accepted: 06/21/2019] [Indexed: 12/15/2022]
15
Zhu Y, Wang Y, Yan Y, Xue H. Rapid and Sensitive Quantification of Anammox Bacteria by Flow Cytometric Analysis Based on Catalyzed Reporter Deposition Fluorescence In Situ Hybridization. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2019;53:6895-6905. [PMID: 31120737 DOI: 10.1021/acs.est.9b01017] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
16
Dyksma S, Lenk S, Sawicka JE, Mußmann M. Uncultured Gammaproteobacteria and Desulfobacteraceae Account for Major Acetate Assimilation in a Coastal Marine Sediment. Front Microbiol 2018;9:3124. [PMID: 30619197 PMCID: PMC6305295 DOI: 10.3389/fmicb.2018.03124] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2018] [Accepted: 12/03/2018] [Indexed: 11/13/2022]  Open
17
Li M, Yang Y, He Y, Mathieu J, Yu C, Li Q, Alvarez PJJ. Detection and cell sorting of Pseudonocardia species by fluorescence in situ hybridization and flow cytometry using 16S rRNA-targeted oligonucleotide probes. Appl Microbiol Biotechnol 2018;102:3375-3386. [DOI: 10.1007/s00253-018-8801-3] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2017] [Revised: 12/19/2017] [Accepted: 01/21/2018] [Indexed: 10/18/2022]
18
Gordeev AA, Chetverin AB. Methods for Screening Live Cells. BIOCHEMISTRY (MOSCOW) 2018;83:S81-S102. [DOI: 10.1134/s0006297918140080] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
19
Shabarova T, Kasalický V, Šimek K, Nedoma J, Znachor P, Posch T, Pernthaler J, Salcher MM. Distribution and ecological preferences of the freshwater lineage LimA (genus Limnohabitans) revealed by a new double hybridization approach. Environ Microbiol 2017;19:1296-1309. [PMID: 28063252 DOI: 10.1111/1462-2920.13663] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2016] [Revised: 12/21/2016] [Accepted: 01/02/2017] [Indexed: 11/26/2022]
20
Bruder LM, Dörkes M, Fuchs BM, Ludwig W, Liebl W. Flow cytometric sorting of fecal bacteria after in situ hybridization with polynucleotide probes. Syst Appl Microbiol 2016;39:464-475. [DOI: 10.1016/j.syapm.2016.08.005] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2016] [Revised: 08/18/2016] [Accepted: 08/19/2016] [Indexed: 01/19/2023]
21
Vekeman B, Kerckhof FM, Cremers G, de Vos P, Vandamme P, Boon N, Op den Camp HJM, Heylen K. New Methyloceanibacter diversity from North Sea sediments includes methanotroph containing solely the soluble methane monooxygenase. Environ Microbiol 2016;18:4523-4536. [PMID: 27501305 DOI: 10.1111/1462-2920.13485] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2016] [Accepted: 08/04/2016] [Indexed: 12/14/2022]
22
Teufel AG, Li W, Kiss AJ, Morgan-Kiss RM. Impact of nitrogen and phosphorus on phytoplankton production and bacterial community structure in two stratified Antarctic lakes: a bioassay approach. Polar Biol 2016. [DOI: 10.1007/s00300-016-2025-8] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
23
Ultrastructural and Single-Cell-Level Characterization Reveals Metabolic Versatility in a Microbial Eukaryote Community from an Ice-Covered Antarctic Lake. Appl Environ Microbiol 2016;82:3659-3670. [PMID: 27084010 DOI: 10.1128/aem.00478-16] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2016] [Accepted: 04/10/2016] [Indexed: 12/29/2022]  Open
24
Modification of a High-Throughput Automatic Microbial Cell Enumeration System for Shipboard Analyses. Appl Environ Microbiol 2016;82:3289-3296. [PMID: 27016562 DOI: 10.1128/aem.03931-15] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2015] [Accepted: 03/18/2016] [Indexed: 01/17/2023]  Open
25
Zhu J, Wang Q, Yuan M, Tan GYA, Sun F, Wang C, Wu W, Lee PH. Microbiology and potential applications of aerobic methane oxidation coupled to denitrification (AME-D) process: A review. WATER RESEARCH 2016;90:203-215. [PMID: 26734780 DOI: 10.1016/j.watres.2015.12.020] [Citation(s) in RCA: 84] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/25/2015] [Revised: 12/10/2015] [Accepted: 12/12/2015] [Indexed: 06/05/2023]
26
Ubiquitous Gammaproteobacteria dominate dark carbon fixation in coastal sediments. ISME JOURNAL 2016;10:1939-53. [PMID: 26872043 DOI: 10.1038/ismej.2015.257] [Citation(s) in RCA: 142] [Impact Index Per Article: 17.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/17/2015] [Revised: 11/27/2015] [Accepted: 12/01/2015] [Indexed: 01/10/2023]
27
Comprehensive Genomic Analyses of the OM43 Clade, Including a Novel Species from the Red Sea, Indicate Ecotype Differentiation among Marine Methylotrophs. Appl Environ Microbiol 2015;82:1215-1226. [PMID: 26655752 DOI: 10.1128/aem.02852-15] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2015] [Accepted: 12/03/2015] [Indexed: 12/16/2022]  Open
28
Kodzius R, Gojobori T. Single-cell technologies in environmental omics. Gene 2015;576:701-7. [PMID: 26474748 DOI: 10.1016/j.gene.2015.10.031] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
29
Ramachandran A, Walsh DA. Investigation of XoxF methanol dehydrogenases reveals new methylotrophic bacteria in pelagic marine and freshwater ecosystems. FEMS Microbiol Ecol 2015;91:fiv105. [DOI: 10.1093/femsec/fiv105] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/16/2015] [Indexed: 11/14/2022]  Open
30
Rapid and sensitive identification of marine bacteria by an improved in situ DNA hybridization chain reaction (quickHCR-FISH). Syst Appl Microbiol 2015. [PMID: 26215142 DOI: 10.1016/j.syapm.2015.06.007] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
31
The ecology of pelagic freshwater methylotrophs assessed by a high-resolution monitoring and isolation campaign. ISME JOURNAL 2015;9:2442-53. [PMID: 25942006 DOI: 10.1038/ismej.2015.55] [Citation(s) in RCA: 64] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/22/2014] [Revised: 02/19/2015] [Accepted: 03/06/2015] [Indexed: 11/08/2022]
32
Zimmermann M, Escrig S, Hübschmann T, Kirf MK, Brand A, Inglis RF, Musat N, Müller S, Meibom A, Ackermann M, Schreiber F. Phenotypic heterogeneity in metabolic traits among single cells of a rare bacterial species in its natural environment quantified with a combination of flow cell sorting and NanoSIMS. Front Microbiol 2015;6:243. [PMID: 25932020 PMCID: PMC4399338 DOI: 10.3389/fmicb.2015.00243] [Citation(s) in RCA: 60] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2015] [Accepted: 03/12/2015] [Indexed: 11/24/2022]  Open
33
Neuenschwander SM, Salcher MM, Pernthaler J. Fluorescence in situ hybridization and sequential catalyzed reporter deposition (2C-FISH) for the flow cytometric sorting of freshwater ultramicrobacteria. Front Microbiol 2015;6:247. [PMID: 25873914 PMCID: PMC4379941 DOI: 10.3389/fmicb.2015.00247] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2015] [Accepted: 03/13/2015] [Indexed: 12/18/2022]  Open
34
Turner AD, Higgins C, Davidson K, Veszelovszki A, Payne D, Hungerford J, Higman W. Potential threats posed by new or emerging marine biotoxins in UK waters and examination of detection methodology used in their control: brevetoxins. Mar Drugs 2015;13:1224-54. [PMID: 25775421 PMCID: PMC4377981 DOI: 10.3390/md13031224] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2014] [Revised: 02/11/2015] [Accepted: 02/25/2015] [Indexed: 12/04/2022]  Open
35
Shengnan LI, Xiujuan WANG, Jian ZHOU, Fanxiang KONG, Xiaoli SHI. Application of flow cytometry to enumerate small plankton. ACTA ACUST UNITED AC 2015. [DOI: 10.18307/2015.0501] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/01/2022]
36
Simultaneous quantification of active carbon- and nitrogen-fixing communities and estimation of fixation rates using fluorescence in situ hybridization and flow cytometry. Appl Environ Microbiol 2014;80:6750-9. [PMID: 25172848 DOI: 10.1128/aem.01962-14] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
37
Humily F, Farrant GK, Marie D, Partensky F, Mazard S, Perennou M, Labadie K, Aury JM, Wincker P, Segui AN, Scanlan DJ, Garczarek L. Development of a targeted metagenomic approach to study a genomic region involved in light harvesting in marine Synechococcus. FEMS Microbiol Ecol 2014;88:231-49. [PMID: 24862161 DOI: 10.1111/1574-6941.12285] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2013] [Revised: 11/14/2013] [Accepted: 01/12/2014] [Indexed: 12/01/2022]  Open
38
Hahnke S, Sperling M, Langer T, Wichels A, Gerdts G, Beardsley C, Brinkhoff T, Simon M. Distinct seasonal growth patterns of the bacteriumPlanktotalea frisiain the North Sea and specific interaction with phytoplankton algae. FEMS Microbiol Ecol 2013;86:185-99. [DOI: 10.1111/1574-6941.12151] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2013] [Revised: 05/10/2013] [Accepted: 05/21/2013] [Indexed: 11/28/2022]  Open
39
Laurent MCZ, Le Bris N, Gaill F, Gros O. Dynamics of wood fall colonization in relation to sulfide concentration in a mangrove swamp. MARINE ENVIRONMENTAL RESEARCH 2013;87-88:85-95. [PMID: 23623161 DOI: 10.1016/j.marenvres.2013.03.007] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/26/2012] [Revised: 03/23/2013] [Accepted: 03/27/2013] [Indexed: 06/02/2023]
40
Blainey PC. The future is now: single-cell genomics of bacteria and archaea. FEMS Microbiol Rev 2013;37:407-27. [PMID: 23298390 PMCID: PMC3878092 DOI: 10.1111/1574-6976.12015] [Citation(s) in RCA: 196] [Impact Index Per Article: 17.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2012] [Revised: 11/28/2012] [Accepted: 12/20/2012] [Indexed: 01/08/2023]  Open
41
Hahnke S, Brock NL, Zell C, Simon M, Dickschat JS, Brinkhoff T. Physiological diversity of Roseobacter clade bacteria co-occurring during a phytoplankton bloom in the North Sea. Syst Appl Microbiol 2013;36:39-48. [DOI: 10.1016/j.syapm.2012.09.004] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2012] [Revised: 09/19/2012] [Accepted: 09/20/2012] [Indexed: 11/24/2022]
42
Salcher MM, Posch T, Pernthaler J. In situ substrate preferences of abundant bacterioplankton populations in a prealpine freshwater lake. ISME JOURNAL 2012;7:896-907. [PMID: 23235289 DOI: 10.1038/ismej.2012.162] [Citation(s) in RCA: 104] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
43
Lenk S, Moraru C, Hahnke S, Arnds J, Richter M, Kube M, Reinhardt R, Brinkhoff T, Harder J, Amann R, Mußmann M. Roseobacter clade bacteria are abundant in coastal sediments and encode a novel combination of sulfur oxidation genes. THE ISME JOURNAL 2012;6:2178-87. [PMID: 22739490 PMCID: PMC3504970 DOI: 10.1038/ismej.2012.66] [Citation(s) in RCA: 95] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/02/2012] [Revised: 05/01/2012] [Accepted: 05/03/2012] [Indexed: 11/09/2022]
44
Evaluation of the environmental specificity of Fluorescence In Situ Hybridization (FISH) using Fluorescence-Activated Cell Sorting (FACS) of probe (PSE1284)-positive cells extracted from rhizosphere soil. Syst Appl Microbiol 2012;35:533-40. [DOI: 10.1016/j.syapm.2011.11.009] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2011] [Revised: 11/08/2011] [Accepted: 11/09/2011] [Indexed: 01/14/2023]
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Kubota K. CARD-FISH for environmental microorganisms: technical advancement and future applications. Microbes Environ 2012;28:3-12. [PMID: 23124765 PMCID: PMC4070690 DOI: 10.1264/jsme2.me12107] [Citation(s) in RCA: 61] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
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HISH-SIMS analysis of bacterial uptake of algal-derived carbon in the Río de la Plata estuary. Syst Appl Microbiol 2012;35:541-8. [PMID: 23026312 DOI: 10.1016/j.syapm.2012.08.004] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2011] [Revised: 08/20/2012] [Accepted: 08/21/2012] [Indexed: 11/21/2022]
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Polymer-Based Microfluidic Devices for Pharmacy, Biology and Tissue Engineering. Polymers (Basel) 2012. [DOI: 10.3390/polym4031349] [Citation(s) in RCA: 103] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]  Open
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Müller S, Hübschmann T, Kleinsteuber S, Vogt C. High resolution single cell analytics to follow microbial community dynamics in anaerobic ecosystems. Methods 2012;57:338-49. [DOI: 10.1016/j.ymeth.2012.04.001] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2011] [Revised: 02/07/2012] [Accepted: 04/03/2012] [Indexed: 10/28/2022]  Open
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Mota CR, So MJ, de los Reyes FL. Identification of nitrite-reducing bacteria using sequential mRNA fluorescence in situ hybridization and fluorescence-assisted cell sorting. MICROBIAL ECOLOGY 2012;64:256-267. [PMID: 22370876 DOI: 10.1007/s00248-012-0018-x] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/13/2011] [Accepted: 01/25/2012] [Indexed: 05/31/2023]
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Gros O, Elisabeth NH, Gustave SDD, Caro A, Dubilier N. Plasticity of symbiont acquisition throughout the life cycle of the shallow-water tropical lucinid Codakia orbiculata (Mollusca: Bivalvia). Environ Microbiol 2012;14:1584-95. [PMID: 22672589 DOI: 10.1111/j.1462-2920.2012.02748.x] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
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