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Park SC, Steffan BN, Yun Lim F, Gupta R, Ayaloglu Butun F, Chen H, Ye R, Decker T, Wu CC, Kelleher NL, Woo Bok J, Keller NP. Terpenoid balance in Aspergillus nidulans unveiled by heterologous squalene synthase expression. SCIENCE ADVANCES 2024; 10:eadk7416. [PMID: 38381828 PMCID: PMC10881027 DOI: 10.1126/sciadv.adk7416] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/07/2023] [Accepted: 01/18/2024] [Indexed: 02/23/2024]
Abstract
Filamentous fungi produce numerous uncharacterized natural products (NPs) that are often challenging to characterize because of cryptic expression in laboratory conditions. Previously, we have successfully isolated novel NPs by expressing fungal artificial chromosomes (FACs) from a variety of fungal species into Aspergillus nidulans. Here, we demonstrate a twist to FAC utility wherein heterologous expression of a Pseudogymnoascus destructans FAC in A. nidulans altered endogenous terpene biosynthetic pathways. In contrast to wild type, the FAC transformant produced increased levels of squalene and aspernidine type compounds, including three new nidulenes (1- 2, and 5), and lost nearly all ability to synthesize the major A. nidulans characteristic terpene, austinol. Deletion of a squalene synthase gene in the FAC restored wild-type chemical profiles. The altered squalene to farnesyl pyrophosphate ratio leading to synthesis of nidulenes and aspernidines at the expense of farnesyl pyrophosphate-derived austinols provides unexpected insight into routes of terpene synthesis in fungi.
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Affiliation(s)
- Sung Chul Park
- Department of Medical Microbiology and Immunology, University of Wisconsin–Madison, Madison, WI, USA
| | - Breanne N. Steffan
- Department of Medical Microbiology and Immunology, University of Wisconsin–Madison, Madison, WI, USA
| | - Fang Yun Lim
- Department of Medical Microbiology and Immunology, University of Wisconsin–Madison, Madison, WI, USA
- Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, Seattle, WA, USA
| | - Raveena Gupta
- Department of Chemistry, Northwestern University, Evanston, IL, USA
| | | | | | - Rosa Ye
- Intact Genomics Inc., St. Louis, MO, USA
| | | | | | - Neil L. Kelleher
- Department of Chemistry, Northwestern University, Evanston, IL, USA
| | - Jin Woo Bok
- Department of Medical Microbiology and Immunology, University of Wisconsin–Madison, Madison, WI, USA
| | - Nancy P. Keller
- Department of Medical Microbiology and Immunology, University of Wisconsin–Madison, Madison, WI, USA
- Department of Plant Pathology, University of Wisconsin–Madison, Madison, WI, USA
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Park SC, Steffan BN, Lim FY, Gupta R, Butun FA, Chen H, Ye R, Decker T, Wu CC, Kelleher NL, Bok JW, Keller NP. Terpenoid balance in Aspergillus nidulans unveiled by heterologous squalene synthase expression. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.10.20.563295. [PMID: 37905136 PMCID: PMC10614972 DOI: 10.1101/2023.10.20.563295] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/02/2023]
Abstract
Filamentous fungi produce numerous uncharacterized natural products (NPs) that are often challenging to characterize due to cryptic expression in laboratory conditions. Previously, we have successfully isolated novel NPs by expressing fungal artificial chromosomes (FACs) from a variety of fungal species into Aspergillus nidulans. Here, we demonstrate a new twist to FAC utility wherein heterologous expression of a Pseudogymnoascus destructans FAC in A. nidulans altered endogenous terpene biosynthetic pathways. In contrast to wildtype, the FAC transformant produced increased levels of squalene and aspernidine type compounds, including three new nidulenes (1-2, 5), and lost nearly all ability to synthesize the major A. nidulans characteristic terpene, austinol. Deletion of a squalene synthase gene in the FAC restored wildtype chemical profiles. The altered squalene to farnesyl pyrophosphate ratio leading to synthesis of nidulenes and aspernidines at the expense of farnesyl pyrophosphate derived austinols provides unexpected insight into routes of terpene synthesis in fungi.
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Affiliation(s)
- Sung Chul Park
- Department of Medical Microbiology and Immunology, University of Wisconsin–Madison, Madison, WI
| | - Breanne N. Steffan
- Department of Medical Microbiology and Immunology, University of Wisconsin–Madison, Madison, WI
| | - Fang Yun Lim
- Department of Medical Microbiology and Immunology, University of Wisconsin–Madison, Madison, WI
- Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, Seattle WA
| | - Raveena Gupta
- Department of Chemistry, Northwestern University, IL
| | | | | | | | | | | | | | - Jin Woo Bok
- Department of Medical Microbiology and Immunology, University of Wisconsin–Madison, Madison, WI
| | - Nancy P. Keller
- Department of Medical Microbiology and Immunology, University of Wisconsin–Madison, Madison, WI
- Department of Plant Pathology, University of Wisconsin–Madison, Madison, WI
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Spanova M, Daum G. Squalene - biochemistry, molecular biology, process biotechnology, and applications. EUR J LIPID SCI TECH 2011. [DOI: 10.1002/ejlt.201100203] [Citation(s) in RCA: 155] [Impact Index Per Article: 11.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
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Tsibakhashvili NY, Kalabegishvili TL, Rcheulishvili AN, Gintury EN, Lomidze LG, Gvarjaladze DN, Rcheulishvili OA, Holman HYN. Effect of Zn(II) on the reduction and accumulation of Cr(VI) by Arthrobacter species. J Ind Microbiol Biotechnol 2011; 38:1803-8. [PMID: 21547698 DOI: 10.1007/s10295-011-0967-y] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2010] [Accepted: 03/22/2011] [Indexed: 11/26/2022]
Abstract
Natural habitats are often characterized by the coexistence of Zn and Cr. This study assessed the potential of two Gram-positive, Cr(VI)-reducing, aerobic bacterial strains belonging to Arthrobacter genera, which were isolated from basalt samples taken from the most polluted region of the Republic of Georgia, to remediate Cr(VI) in environments in the presence of Zn(II). Our batch experiments revealed that the addition of Zn(II) to the tested bacterial cells significantly enhanced the accumulation of Cr. According to electron spin resonance (ESR) measurements, the presence of Zn(II) ions did not change the nature of Cr(V) and Cr(III) complexes generated during the microbial reduction of Cr(VI). The efficiency of Cr(VI) reduction also remained unchanged after the addition of 50 mg/l of Zn(II) to the bacterial cells. However, at high concentrations of Zn(II) (higher than 200 mg/l), the transformation of Cr(VI) to Cr(V) and Cr(III) complexes decreases significantly. In addition, it was shown that the accumulation pattern of Zn in the tested bacterial species in the presence of 100 mg/l of Cr(VI) fits the Langmuir-Freundlich model well. The two tested bacterial strains exhibited different characteristics of Zn accumulation.
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Ikeguchi N, Nihira T, Kishimoto A, Yamada Y. Oxidative Pathway from Squalene to Geranylacetone in Arthrobacter sp. Strain Y-11. Appl Environ Microbiol 2010; 54:381-5. [PMID: 16347551 PMCID: PMC202461 DOI: 10.1128/aem.54.2.381-385.1988] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
The reaction pathway from squalene to trans-geranylacetone in Arthrobacter sp. strain Y-11 was studied. The enzyme or enzymes catalyzing squalene degradation were found to be membrane bound. Stoichiometric analysis of a cell-free system revealed that the ratio of squalene to trans-geranylacetone changed from 1:2 to 1:1 as the reaction proceeded, indicating two steps in geranylacetone formation. The initial step was found to be oxygenase catalyzed, from the absolute requirement for molecular oxygen in geranylacetone formation and the incorporation of O into geranylacetone under O(2) atmosphere. By using [H]squalene as the substrate, we detected an intermediate in the pathway and identified it as 5,9,13-trimethyltetradeca-4,8,12-trienoic acid by mass spectrometry, infrared spectrometry, nuclear magnetic resonance spectrometry, and chemical synthesis. We deduced that squalene was first oxidatively cleaved to geranylacetone and the intermediate, and that the intermediate was further metabolized to geranylacetone. We also synthesized some of the presumptive metabolites, such as 4,8,12-trimethyltrideca-4,8,12-trien-2-one, and confirmed that they served as active precursors for geranylacetone formation. Based on these lines of evidence, we present here the pathway from squalene to trans-geranylacetone in Arthrobacter sp. strain Y-11.
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Affiliation(s)
- N Ikeguchi
- Department of Fermentation Technology, Faculty of Engineering, Osaka University, 2-1 Yamada-oka, Suita-shi, Osaka 565, Japan
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Tsuchii A, Suzuki T, Takeda K. Microbial degradation of natural rubber vulcanizates. Appl Environ Microbiol 2010; 50:965-70. [PMID: 16346923 PMCID: PMC291777 DOI: 10.1128/aem.50.4.965-970.1985] [Citation(s) in RCA: 72] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
An actinomycete, Nocardia sp. strain 835A, grows well on unvulcanized natural rubber and synthetic isoprene rubber, but not on other types of synthetic rubber. Not only unvulcanized but also various kinds of vulcanized natural rubber products were more or less utilized by the organism as the sole source of carbon and energy. The thin film from a latex glove was rapidly degraded, and the weight loss reached 75% after a 2-week cultivation period. Oligomers with molecular weights from 10 to 10 were accumulated during microbial growth on the latex glove. The partially purified oligomers were examined by infrared and H nuclear magnetic resonance and C nuclear magnetic resonance spectroscopy, and the spectra were those expected of cis-1, 4-polyisoprene with the structure, OHC-CH(2)-[-CH(2)-C(-CH(3))=CH -CH(2)-](n)-CH(2)-C(=O)- CH(3), with average values of n of about 114 and 19 for the two oligomers.
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Affiliation(s)
- A Tsuchii
- Fermentation Research Institute, Agency of Industrial Science and Technology, Yatabe, Tsukuba, Ibaragi 305, Japan
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Rose K, Steinbüchel A. Biodegradation of natural rubber and related compounds: recent insights into a hardly understood catabolic capability of microorganisms. Appl Environ Microbiol 2005; 71:2803-12. [PMID: 15932971 PMCID: PMC1151847 DOI: 10.1128/aem.71.6.2803-2812.2005] [Citation(s) in RCA: 135] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Affiliation(s)
- Karsten Rose
- Institut für Molekulare Mikrobiologie und Biotechnologie, Westfälische Wilhelms-Universität Münster, Corrensstrasse 3, D-48149 Münster, Germany
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Rontani JF, Mouzdahir A, Michotey V, Caumette P, Bonin P. Production of a polyunsaturated isoprenoid wax ester during aerobic metabolism of squalene by Marinobacter squalenivorans sp. nov. Appl Environ Microbiol 2003; 69:4167-76. [PMID: 12839795 PMCID: PMC165200 DOI: 10.1128/aem.69.7.4167-4176.2003] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2002] [Accepted: 04/28/2003] [Indexed: 11/20/2022] Open
Abstract
This paper describes the production of 5,9,13-trimethyltetradeca-4E,8E,12-trienyl-5,9,13-trimethyltetradeca-4E,8E,12-trienoate during the aerobic degradation of squalene by a Marinobacter strain, 2Asq64, isolated from the marine environment. A pathway involving initial cleavage of the C(10)-C(11) or C(14)-C(15) double bonds of the squalene molecule is proposed to explain the formation of this polyunsaturated isoprenoid wax ester. The isoprenoid wax ester content reached 1.1% of the degraded squalene at the mid-exponential growth phase and then decreased during the stationary phase. The wax ester content increased by approximately threefold in N-limited cultures, in which the ammonium concentration corresponds to conditions often found in marine sediments. This suggests that the bacterial formation of isoprenoid wax esters might be favored in such environments. The bacterial strain is then characterized as a member of a new species, for which we propose the name Marinobacter squalenivorans sp. nov.
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Affiliation(s)
- Jean-François Rontani
- Laboratoire d'Océanographie et de Biogéochimie (UMR 6535), Centre d'Océanologie de Marseille-OSU, Campus de Luminy, case 901, 13288 Marseille, France.
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Berekaa MM, Steinbüchel A. Microbial degradation of the multiply branched alkane 2,6,10,15,19, 23-hexamethyltetracosane (Squalane) by Mycobacterium fortuitum and Mycobacterium ratisbonense. Appl Environ Microbiol 2000; 66:4462-7. [PMID: 11010899 PMCID: PMC92325 DOI: 10.1128/aem.66.10.4462-4467.2000] [Citation(s) in RCA: 53] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Among several bacterial species belonging to the general Gordonia, Mycobacterium, Micromonospora, Pseudomonas, and Rhodococcus, only two mycobacterial isolates, Mycobacterium fortuitum strain NF4 and the new isolate Mycobacterium ratisbonense strain SD4, which was isolated from a sewage treatment plant, were capable of utilizing the multiply branched hydrocarbon squalane (2,6,10,15,19, 23-hexamethyltetracosane) and its analogous unsaturated hydrocarbon squalene as the sole carbon source for growth. Detailed degradation studies and high-pressure liquid chromatography analysis showed a clear decrease of the concentrations of squalane and squalene during biomass increase. These results were supported by resting-cell experiments using strain SD4 and squalane or squalene as the substrate. The degradation of acyclic isoprenoids and alkanes as well as of acids derived from these compounds was also investigated. Inhibition of squalane and squalene degradation by acrylic acid indicated the possible involvement of beta-oxidation in the degradation route. To our knowledge, this is the first report demonstrating the biodegradation of squalane by using defined axenic cultures.
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Affiliation(s)
- M M Berekaa
- Institut für Mikrobiologie, Westfälische Wilhelms-Universität Münster, D-48149 Münster, Germany
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Miller CL, Landa ER, Updegraff DM. Ecological aspects of microorganisms inhabiting uranium mill tailings. MICROBIAL ECOLOGY 1987; 14:141-155. [PMID: 24202642 DOI: 10.1007/bf02013019] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
Numbers and types of microorganisms in uranium mill tailings were determined using culturing techniques.Arthrobacter were found to be the predominant microorganism inhabiting the sandy tailings, whereasBacillus and fungi predominated in the slime tailings. Sulfate-reducing bacteria, capable of leaching radium, were isolated in low numbers from tailings samples but were isolated in significantly high numbers from topsoil in contact with the tailings. The results are placed in the context of the magnitude of uranium mill tailings in the United States, the hazards posed by the tailings, and how such hazards could be enhanced or diminished by microbial activities. Patterns in the composition of the microbial population are evaluated with respect to the ecological variables that influence microbial growth.
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Affiliation(s)
- C L Miller
- Water Resources Division, US Geological Survey, Arvada, Colorado, USA
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Abstract
Squalene analogs such as lycopersene, geranylfarnesyl, digeranyl, and 2-hydroxy-2,3-dihydrosqualene and terpene alcohol derivatives such as farnesyl benzyl ether, farnesyl pivalate, geranylgeranyl pivalate, geranyl pivalate, and geranyl benzyl ether were oxidized by Corynebacterium sp. strain SY-79, which was isolated from soil by using squalene as a carbon source. Lycopersene and geranylfarnesyl gave no major product. Digeranyl, geranyl benzyl ether, and geranyl pivalate gave terminal oxidation products, and 2-hydroxy-2,3-dihydrosqualene, farnesyl benzyl ether, farnesyl pivalate, and geranylgeranyl pivalate were degraded to give lower molecular carboxylic acids. Strain SY-79 showed promising oxidative activities toward acyclic terpenes, although the metabolites obtained were variable, depending upon the structure of the substrate.
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Seo CW, Yamada Y, Takada N, Okada H. Microbial Transformation of Squalene: Terminal Methyl Group Oxidation by
Corynebacterium
sp. Appl Environ Microbiol 1983; 45:522-5. [PMID: 16346201 PMCID: PMC242317 DOI: 10.1128/aem.45.2.522-525.1983] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Corynebacterium
sp. strain SY-79 was isolated from soil, using squalene as a carbon source. Microbiological properties of this bacterium are described. The metabolic product of this bacterium from squalene was identified as 2,6,10,15,19, 23-hexamethyl-2,6,10,14,18,22-tetracosahexaenedioic acid (squalenedioic acid).
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Affiliation(s)
- C W Seo
- Department of Fermentation Technology, Faculty of Engineering, Osaka University, Yamada-oka, Suita-shi, Osaka 565, Japan
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Yamada Y, Kusuhara N, Okada H. Oxidation of linear terpenes and squalene variants by Arthrobacter sp. Appl Environ Microbiol 1977; 33:771-6. [PMID: 869527 PMCID: PMC170765 DOI: 10.1128/aem.33.4.771-776.1977] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022] Open
Abstract
Cells of Arthrobacter sp. that had been isolated from soil were used to study oxidation of some linear terpenes and squalene variants. The cells oxidized geraniol, nerol, and farnesol to the corresponding aldehydes, with partial conversion of the geometrical isomerism of the alpha,beta-double bond. The squalene variant, squalene-2,3-oxide, was cleaved to 9,10-epoxygeranylacetone and geranylacetone. Squalene-2,3-22,23-dioxide was cleaved to 9,10-epoxygeranylacetone. These products were optically active, and their stereochemistry and optical purity were determined.
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