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For: Ibeh N, Nshogozabahizi JC, Aris-Brosou S. Both Epistasis and Diversifying Selection Drive the Structural Evolution of the Ebola Virus Glycoprotein Mucin-Like Domain. J Virol 2016;90:5475-84. [PMID: 27009964 DOI: 10.1128/JVI.00322-16] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2016] [Accepted: 03/18/2016] [Indexed: 11/20/2022]  Open
Number Cited by Other Article(s)
1
Watts S, Ramstedt M, Salentinig S. Ethanol Inactivation of Enveloped Viruses: Structural and Surface Chemistry Insights into Phi6. J Phys Chem Lett 2021;12:9557-9563. [PMID: 34581569 DOI: 10.1021/acs.jpclett.1c02327] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
2
Velazquez-Salinas L, Zarate S, Eberl S, Gladue DP, Novella I, Borca MV. Positive Selection of ORF1ab, ORF3a, and ORF8 Genes Drives the Early Evolutionary Trends of SARS-CoV-2 During the 2020 COVID-19 Pandemic. Front Microbiol 2020;11:550674. [PMID: 33193132 PMCID: PMC7644918 DOI: 10.3389/fmicb.2020.550674] [Citation(s) in RCA: 88] [Impact Index Per Article: 22.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2020] [Accepted: 09/28/2020] [Indexed: 11/13/2022]  Open
3
Dench J, Hinz A, Aris‐Brosou S, Kassen R. Identifying the drivers of computationally detected correlated evolution among sites under antibiotic selection. Evol Appl 2020;13:781-793. [PMID: 32211067 PMCID: PMC7086105 DOI: 10.1111/eva.12900] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2019] [Revised: 10/02/2019] [Accepted: 11/14/2019] [Indexed: 11/29/2022]  Open
4
Mucin-Like Domain of Ebola Virus Glycoprotein Enhances Selective Oncolytic Actions against Brain Tumors. J Virol 2020;94:JVI.01967-19. [PMID: 32051271 DOI: 10.1128/jvi.01967-19] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2019] [Accepted: 02/03/2020] [Indexed: 01/24/2023]  Open
5
Aris-Brosou S, Parent L, Ibeh N. Viral Long-Term Evolutionary Strategies Favor Stability over Proliferation. Viruses 2019;11:v11080677. [PMID: 31344814 PMCID: PMC6722887 DOI: 10.3390/v11080677] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2019] [Revised: 07/12/2019] [Accepted: 07/20/2019] [Indexed: 02/01/2023]  Open
6
Existing Host Range Mutations Constrain Further Emergence of RNA Viruses. J Virol 2019;93:JVI.01385-18. [PMID: 30463962 DOI: 10.1128/jvi.01385-18] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2018] [Accepted: 11/06/2018] [Indexed: 02/07/2023]  Open
7
Shim H. Feature Learning of Virus Genome Evolution With the Nucleotide Skip-Gram Neural Network. Evol Bioinform Online 2019;15:1176934318821072. [PMID: 30692845 PMCID: PMC6335656 DOI: 10.1177/1176934318821072] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2018] [Accepted: 11/15/2018] [Indexed: 12/14/2022]  Open
8
Aris-Brosou S, Ibeh N, Noël J. Viral outbreaks involve destabilized evolutionary networks: evidence from Ebola, Influenza and Zika. Sci Rep 2017;7:11881. [PMID: 28928377 PMCID: PMC5605547 DOI: 10.1038/s41598-017-12268-9] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2017] [Accepted: 09/01/2017] [Indexed: 01/01/2023]  Open
9
Alter I, Gragert L, Fingerson S, Maiers M, Louzoun Y. HLA class I haplotype diversity is consistent with selection for frequent existing haplotypes. PLoS Comput Biol 2017;13:e1005693. [PMID: 28846675 PMCID: PMC5590998 DOI: 10.1371/journal.pcbi.1005693] [Citation(s) in RCA: 31] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2016] [Revised: 09/08/2017] [Accepted: 07/20/2017] [Indexed: 01/03/2023]  Open
10
Nshogozabahizi JC, Dench J, Aris-Brosou S. Widespread Historical Contingency in Influenza Viruses. Genetics 2017;205:409-420. [PMID: 28049709 PMCID: PMC5223518 DOI: 10.1534/genetics.116.193979] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2016] [Accepted: 11/04/2016] [Indexed: 11/18/2022]  Open
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