1
|
Jeong MJ, Wang Z, Zou WQ, Kim YC, Jeong BH. The first report of polymorphisms of the prion protein gene ( PRNP) in Pekin ducks ( Anas platyrhynchos domestica). Front Vet Sci 2023; 10:1273050. [PMID: 38026621 PMCID: PMC10664711 DOI: 10.3389/fvets.2023.1273050] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2023] [Accepted: 10/26/2023] [Indexed: 12/01/2023] Open
Abstract
Background Prion diseases have been extensively reported in various mammalian species and are caused by a pathogenic prion protein (PrPSc), which is a misfolded version of cellular prion protein (PrPC). Notably, no cases of prion disease have been reported in birds. Single nucleotide polymorphisms (SNPs) of the prion protein gene (PRNP) that encodes PrP have been associated with susceptibility to prion diseases in several species. However, no studies on PRNP polymorphisms in domestic ducks have been reported thus far. Method To investigate PRNP polymorphisms in domestic ducks, we isolated genomic DNA from 214 Pekin duck samples and sequenced the coding region of the Pekin duck PRNP gene. We analyzed genotype, allele, and haplotype distributions and linkage disequilibrium (LD) among the SNPs of the Pekin duck PRNP gene. In addition, we evaluated the effects of the one non-synonymous SNP on the function and structure of PrP using the PROVEAN, PANTHER, SNPs & GO, SODA, and AMYCO in silico prediction programs. Results We found five novel SNPs, c.441 T > C, c.495 T > C, c.582A > G, c.710C > T(P237L), and c.729C > T, in the ORF region of the PRNP gene in 214 Pekin duck samples. We observed strong LD between c.441 T > C and c.582A > G (0.479), and interestingly, the link between c.495 T > C and c.729C > T was in perfect LD, with an r2 value of 1.0. In addition, we identified the five major haplotype frequencies: TTACC, CTGCC, CTACC, CCGCT, and CTATC. Furthermore, we found that the non-synonymous SNP, c.710C > T (P237L), had no detrimental effects on the function or structure of Pekin duck PrP. However, the non-synonymous SNP had deleterious effects on the aggregation propensity and solubility of Pekin duck PrP compared with wildtype Pekin duck PrP. Conclusion To the best of our knowledge, this study is the first report on the genetic characteristics of PRNP SNPs in Pekin ducks.
Collapse
Affiliation(s)
- Min-Ju Jeong
- Korea Zoonosis Research Institute, Jeonbuk National University, Iksan, Republic of Korea
- Department of Bioactive Material Sciences, Jeonbuk National University, Jeonju, Republic of Korea
| | - Zerui Wang
- Department of Pathology, Case Western Reserve University School of Medicine, Cleveland, OH, United States
| | - Wen-Quan Zou
- Department of Pathology, Case Western Reserve University School of Medicine, Cleveland, OH, United States
| | - Yong-Chan Kim
- Department of Biological Sciences, Andong National University, Andong, Republic of Korea
| | - Byung-Hoon Jeong
- Korea Zoonosis Research Institute, Jeonbuk National University, Iksan, Republic of Korea
- Department of Bioactive Material Sciences, Jeonbuk National University, Jeonju, Republic of Korea
- Department of Pathology, Case Western Reserve University School of Medicine, Cleveland, OH, United States
| |
Collapse
|
2
|
Gelasakis AI, Boukouvala E, Babetsa M, Katharopoulos E, Palaska V, Papakostaki D, Giadinis ND, Loukovitis D, Langeveld JPM, Ekateriniadou LV. Polymorphisms of Codons 110, 146, 211 and 222 at the Goat PRNP Locus and Their Association with Scrapie in Greece. Animals (Basel) 2021; 11:ani11082340. [PMID: 34438796 PMCID: PMC8388637 DOI: 10.3390/ani11082340] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2021] [Revised: 08/03/2021] [Accepted: 08/05/2021] [Indexed: 12/27/2022] Open
Abstract
Scrapie is considered an endemic disease in both sheep and goats in Greece. However, contrary to sheep, in goats more than one prion protein (PrP) polymorphism has been recognized as a candidate for resistance breeding against the disease. For an impression, candidates which are circulating, (i) brain samples (n = 525) from scrapie-affected (n = 282) and non-affected (n = 243) animals within the national surveillance program, and (ii) individual blood samples (n = 1708) from affected (n = 241) and non-affected (n = 1467) herds, in a large part of mainland Greece and its islands, were collected and assayed. A dedicated Taqman method was used to test for amino acid polymorphisms 110T/P, 146N/S/D, 211R/Q, and 222Q/K. Highly prevalent genotypes were 110TT, 146NN, 211RR, and 222QQ. The frequencies of polymorphisms in blood and negative brain samples for codons 110P, 211Q, and 222K were 4.0%, 3.0%, and 1.9%, respectively, while 146D (0.7%) was present only on Karpathos island. Codon 110P was exclusively found in scrapie-negative brains, and homozygous 110P/P in two scrapie-negative goats. It is concluded that breeding programs in Karpathos could focus on codon 146D, while in other regions carriers of the 110P and 222K allele should be sought. Case-control and challenge studies are now necessary to elucidate the most efficient breeding strategies.
Collapse
Affiliation(s)
- Athanasios I. Gelasakis
- Department of Animal Science, School of Animal Biosciences, Agricultural University of Athens, 11855 Athens, Greece;
| | - Evridiki Boukouvala
- Veterinary Research Institute, ELGO-DIMITRA, 54124 Thessaloniki, Greece; (E.B.); (M.B.); (E.K.)
| | - Maria Babetsa
- Veterinary Research Institute, ELGO-DIMITRA, 54124 Thessaloniki, Greece; (E.B.); (M.B.); (E.K.)
| | | | - Vayia Palaska
- National Reference Laboratory for TSEs, Ministry of Agricultural Development and Food, 41110 Larissa, Greece;
| | - Dimitra Papakostaki
- Veterinary Center of Thessaloniki, Ministry of Agricultural Development and Food, 54627 Thessaloniki, Greece;
| | - Nektarios D. Giadinis
- School of Veterinary Medicine, Aristotle University of Thessaloniki, 54627 Thessaloniki, Greece;
| | | | - Jan P. M. Langeveld
- Department of Infection Biology, Wageningen Bioveterinary Research (WBVR), 8221 RA Lelystad, The Netherlands;
| | - Loukia V. Ekateriniadou
- Veterinary Research Institute, ELGO-DIMITRA, 54124 Thessaloniki, Greece; (E.B.); (M.B.); (E.K.)
- Correspondence:
| |
Collapse
|
3
|
Genetic Variation in the Prion Protein Gene ( PRNP) of Two Tunisian Goat Populations. Animals (Basel) 2021; 11:ani11061635. [PMID: 34073078 PMCID: PMC8228439 DOI: 10.3390/ani11061635] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2021] [Revised: 05/21/2021] [Accepted: 05/26/2021] [Indexed: 01/17/2023] Open
Abstract
Simple Summary Goat production is contributing to the economic and social development of rural areas in arid lands, within harsh conditions of Southern Tunisia. In this geographic zone, there are two caprine populations: the native goat population and the crossed goat population. Genotyping goats for the prion protein gene (PRNP) allows us to estimate their level of genetic susceptibility to scrapie disease. In the present work, the Sanger sequencing method of the entire PRNP coding sequence was used to determine the different PRNP genotypes and haplotypes in two populations (116 animals). This study represents the first investigation on goats’ PRNP genetic variability in Tunisia, and the results are useful in the design of national breeding programs. Abstract Scrapie is a fatal prion disease. It belongs to transmissible spongiform encephalopathies (TSEs), and occurs in sheep and goats. Similarly, to ovine species, the prion protein gene (PRNP) plays a major role in conferring resistance or susceptibility to TSE in goats. This study assesses the variability of PRNP in native and crossed-breed goat populations raised in the Southeast of Tunisia and provides information on the distribution of PRNP haplotypes and genotypes in these goat populations. A total of 116 unrelated goats including 82 native and 34 crossed-breed goats were screened for PRNP polymorphisms using Sanger sequencing. Sequence analysis revealed 10 non-synonymous polymorphisms (G37V, M137I, R139S, I142M, H143R, N146D, R154H, R211Q, Q222K, and S240P), giving rise to 12 haplotypes and 23 genotypes. Moreover, four silent mutations were detected at codons 30, 42, 138, and 179; the former was reported for the first time in goat (nucleotide 60 c→t). Interestingly, the PrP variants associated with resistance (D146 and K222) or with a prolonged incubation time of goat to scrapie (M142, R143, H154, Q211) were absent or detected with low frequencies except for H154 variant, which is present with high frequency (1%, 1%, 4%, 0%, 88%, and 6%, respectively, for native goats, and 0%, 1%, 0%, 1%, 78%, and 1%, respectively, for crossed goats). The analysis of PRNP polymorphisms of goats raised in other regions of the country will be useful in getting a global view of PRNP genetic variability and the feasibility of goat breeding programs in Tunisia.
Collapse
|
4
|
Torricelli M, Sebastiani C, Ciullo M, Ceccobelli S, Chiappini B, Vaccari G, Capocefalo A, Conte M, Giovannini S, Lasagna E, Sarti FM, Biagetti M. PRNP Polymorphisms in Eight Local Goat Populations/Breeds from Central and Southern Italy. Animals (Basel) 2021; 11:ani11020333. [PMID: 33525718 PMCID: PMC7911694 DOI: 10.3390/ani11020333] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2020] [Revised: 01/22/2021] [Accepted: 01/25/2021] [Indexed: 02/08/2023] Open
Abstract
In goats, as in sheep, genotypes of the prion protein gene (PRNP) can influence animals' susceptibility to scrapie. Since the polymorphic codons in sheep are well known, a genetic selection plan has been implemented in Europe, in order to reduce the prevalence of susceptible genotypes to scrapie. In Italy, no breeding plan for scrapie resistance in goats has been adopted, yet. Likewise, according to the most recent modification of Regulation EU 999/2001 (Regulation EU 772/2020) of the European Commission (EU), based on all the available experimental and in field data, K222, D146 and S146 polymorphisms could be used as scrapie resistance alleles in genetic management both in scrapie outbreaks and in disease prevention. In order to collect data on the variability of PRNP, the present study aimed to analyze the sequence of the PRNP gene in eight Italian local goat populations/breeds reared in central and southern Italy (Bianca Monticellana, Capestrina, Facciuta della Valnerina, Fulva del Lazio, Garganica, Grigia Ciociara, Grigia Molisana, and Teramana), some of which were investigated for the first time; moreover, two cosmopolitan breeds (Alpine and Saanen) were included. Blood samples were collected from 219 goats. Genomic DNA was extracted from whole blood. DNA was used as template in PCR amplification of the entire PRNP open reading frame (ORF). Purified amplicons have been sequenced and aligned to Capra hircus PRNP. Particularly, the alleles carrying the resistance-related 222 K polymorphism occurred in all populations with a frequency between 2.5% and 12.5%. An additional resistance allele carrying the S146 variant was observed with a frequency of 3.7% only in the Alpine breed. For three of the estimated alleles, we could not establish if the found double polymorphisms in heterozygosis were in phase, due to technical limitations. In this context, in addition to selective culling in scrapie outbreaks according to the European regulation in force, in the future, selection plans could be adopted to deal with scrapie and to control its diffusion, meanwhile paying attention to preserve a high variability of PRNP.
Collapse
Affiliation(s)
- Martina Torricelli
- Istituto Zooprofilattico Sperimentale dell’Umbria e delle Marche-Togo Rosati (IZSUM), Via Salvemini 1, 06126 Perugia, Italy; (M.T.); (C.S.); (M.C.)
| | - Carla Sebastiani
- Istituto Zooprofilattico Sperimentale dell’Umbria e delle Marche-Togo Rosati (IZSUM), Via Salvemini 1, 06126 Perugia, Italy; (M.T.); (C.S.); (M.C.)
| | - Marcella Ciullo
- Istituto Zooprofilattico Sperimentale dell’Umbria e delle Marche-Togo Rosati (IZSUM), Via Salvemini 1, 06126 Perugia, Italy; (M.T.); (C.S.); (M.C.)
| | - Simone Ceccobelli
- Dipartimento di Scienze Agrarie, Alimentari e Ambientali, Università Politecnica delle Marche, 60131 Ancona, Italy;
| | - Barbara Chiappini
- Dipartimento di Sicurezza Alimentare, Nutrizione e Sanità Pubblica Veterinaria, Istituto Superiore di Sanità, 00161 Rome, Italy; (B.C.); (G.V.); (A.C.); (M.C.)
| | - Gabriele Vaccari
- Dipartimento di Sicurezza Alimentare, Nutrizione e Sanità Pubblica Veterinaria, Istituto Superiore di Sanità, 00161 Rome, Italy; (B.C.); (G.V.); (A.C.); (M.C.)
| | - Antonio Capocefalo
- Dipartimento di Sicurezza Alimentare, Nutrizione e Sanità Pubblica Veterinaria, Istituto Superiore di Sanità, 00161 Rome, Italy; (B.C.); (G.V.); (A.C.); (M.C.)
| | - Michela Conte
- Dipartimento di Sicurezza Alimentare, Nutrizione e Sanità Pubblica Veterinaria, Istituto Superiore di Sanità, 00161 Rome, Italy; (B.C.); (G.V.); (A.C.); (M.C.)
| | - Samira Giovannini
- Dipartimento di Scienze Agrarie, Alimentari e Ambientali, University of Perugia, 06121 Perugia, Italy; (S.G.); (E.L.); (F.M.S.)
| | - Emiliano Lasagna
- Dipartimento di Scienze Agrarie, Alimentari e Ambientali, University of Perugia, 06121 Perugia, Italy; (S.G.); (E.L.); (F.M.S.)
| | - Francesca Maria Sarti
- Dipartimento di Scienze Agrarie, Alimentari e Ambientali, University of Perugia, 06121 Perugia, Italy; (S.G.); (E.L.); (F.M.S.)
| | - Massimo Biagetti
- Istituto Zooprofilattico Sperimentale dell’Umbria e delle Marche-Togo Rosati (IZSUM), Via Salvemini 1, 06126 Perugia, Italy; (M.T.); (C.S.); (M.C.)
- Correspondence:
| |
Collapse
|
5
|
Konold T, Libbey S, Rajanayagam B, Fothergill L, Spiropoulos J, Vidaña B, Alarcon P. Classical Scrapie Did Not Re-occur in Goats After Cleaning and Disinfection of the Farm Premises. Front Vet Sci 2020; 7:585. [PMID: 32984416 PMCID: PMC7492743 DOI: 10.3389/fvets.2020.00585] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2020] [Accepted: 07/21/2020] [Indexed: 11/13/2022] Open
Abstract
After an outbreak of classical scrapie in a dairy goat herd with over 1,800 goats, all goats in the herd were culled in 2008, cleaning and disinfection of the premises was implemented, and restocking with goats took place ~4 months after depopulation. Ten years later the new herd population is over 3,000 goats. This study was carried out to determine whether the measures were effective to prevent re-occurrence of scrapie to the 1% prevalence level seen when scrapie was first detected on this farm. A total of 280 goats with a minimum age of 18 months, which were predominantly at the end of their productive life, were euthanized, and brain and retropharyngeal lymph node examined by immunohistochemistry for disease-associated prion protein. Genotyping was done in all euthanized goats and live male goats used or intended for breeding to determine prion protein gene polymorphisms associated with resistance to classical scrapie. None of the goats presented with disease-associated prion protein in the examined tissues, and 34 (12.2%) carried the K222 allele associated with resistance. This allele was also found in four breeding male goats. The study results suggested that classical scrapie was not re-introduced on this goat farm through mass restocking or inadequate cleaning and disinfection procedures. Further scrapie surveillance of goats on this farm is desirable to confirm absence of disease. Breeding with male goats carrying the K222 allele should be encouraged to increase the scrapie-resistant population.
Collapse
Affiliation(s)
- Timm Konold
- Pathology Department, Animal and Plant Health Agency Weybridge, Addlestone, United Kingdom
| | - Sonja Libbey
- Animal and Plant Health England Field Delivery, Dorchester, United Kingdom
| | - Brenda Rajanayagam
- Department of Epidemiological Sciences, Animal and Plant Health Agency Weybridge, Addlestone, United Kingdom
| | - Louise Fothergill
- Genotyping Unit, Animal and Plant Health Agency Weybridge, Addlestone, United Kingdom
| | - John Spiropoulos
- Pathology Department, Animal and Plant Health Agency Weybridge, Addlestone, United Kingdom
| | - Beatriz Vidaña
- Faculty of Health Sciences, Bristol Veterinary School, University of Bristol, Langford, United Kingdom
| | - Pablo Alarcon
- Department of Pathobiology and Population Sciences, Royal Veterinary College, University of London, Hatfield, United Kingdom
| |
Collapse
|
6
|
Teferedegn EY, Yaman Y, Ün C. Novel Variations in Native Ethiopian Goat breeds PRNP Gene and Their Potential Effect on Prion Protein Stability. Sci Rep 2020; 10:6953. [PMID: 32332800 PMCID: PMC7181617 DOI: 10.1038/s41598-020-63874-z] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2019] [Accepted: 04/08/2020] [Indexed: 12/22/2022] Open
Abstract
Scrapie is a lethal neurodegenerative disease of sheep and goats caused by the misfolding of the prion protein. Variants such as M142, D145, S146, H154, Q211, and K222 were experimentally found to increase resistance or extend scrapie incubation period in goats. We aimed to identify polymorphisms in the Afar and Arsi-Bale goat breeds of Ethiopia and computationally assess the effect of variants on prion protein stability. In the present study, four non-synonymous novel polymorphisms G67S, W68R, G69D, and R159H in the first octapeptide repeat and the highly conserved C-terminus globular domain of goat PrP were detected. The resistant genotype, S146, was detected in >50% of the present population. The current study population showed a genetic diversity in Ethiopian goat breeds. In the insilico analysis, the R68 variant was predicted to increase stability while S67, D69, and H159 decrease the stability of prion protein. The new variants in the octapeptide repeat motif were predicted to decrease amyloidogenicity but H159 increased the hotspot sequence amyloidogenic propensity. These novel variants could be the source of conformational flexibility that may trigger the gain or loss of function by prion protein. Further experimental study is required to depict the actual effects of variants on prion protein stability.
Collapse
Affiliation(s)
| | - Yalçın Yaman
- Department of Biometry and Genetics, Bandırma Sheep Research Institute, Bandırma, Balıkesir, Turkey
| | - Cemal Ün
- Ege University, Department of Biology, Molecular Biology Division, Izmir, Turkey.
| |
Collapse
|
7
|
Jeong MJ, Kim YC, Jeong BH. Prion-like protein gene (PRND) polymorphisms associated with scrapie susceptibility in Korean native black goats. PLoS One 2018; 13:e0206209. [PMID: 30359416 PMCID: PMC6201918 DOI: 10.1371/journal.pone.0206209] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2018] [Accepted: 10/09/2018] [Indexed: 11/19/2022] Open
Abstract
The polymorphisms of the prion protein (PRNP) gene, which encodes normal prion proteins (PrP), are known to be involved in the susceptibility of prion diseases. The prion-like protein (Doppel) gene (PRND) is the paralog of the PRNP gene and is closely located downstream of the PRNP gene. In addition, the polymorphisms of PRND correlate with disease susceptibility in several animals. We analyzed the genotype and allele frequencies of PRND polymorphisms in 246 Korean native black goats and found a total of six single nucleotide polymorphisms (SNPs) with one novel SNP, c.99C>T. We observed linkage disequilibrium (LD) within and between loci. PRND c.28T>C, c.151A>G, and c.385G>C and PRND c.65C>T and c.286G>A were in perfect LD and we have reported for the first time strong LD between PRND and PRNP or prion-related protein gene (PRNT) loci. Specifically, between the PRND c.28T>C, c.151A>G and c.385G>C and the PRNP codon 143, PRND c.99C>T and the PRNP codon 102 or PRND SNPs (c.28T>C, c.151A>G and c.385G>C) and PRNT SNP (c.321T>C). Furthermore, we confirmed that the genotype distribution of the PRNP p.His143Arg was significantly different according to that of the PRND c.28T>C (P < 0.0001). Finally, using PolyPhen-2 and PROVEAN, we predicted that two non-synonymous SNPs, c.65C>T and c.286G>A, in the PRND gene can have a detrimental effect on Doppel. To the best of our knowledge, this is the first report of genetic characteristics of the PRND gene in Korean native black goats.
Collapse
Affiliation(s)
- Min-Ju Jeong
- Korea Zoonosis Research Institute, Chonbuk National University, Iksan, Jeonbuk, Republic of Korea
- Department of Bioactive Material Sciences, Chonbuk National University, Jeonju, Jeonbuk, Republic of Korea
| | - Yong-Chan Kim
- Korea Zoonosis Research Institute, Chonbuk National University, Iksan, Jeonbuk, Republic of Korea
- Department of Bioactive Material Sciences, Chonbuk National University, Jeonju, Jeonbuk, Republic of Korea
| | - Byung-Hoon Jeong
- Korea Zoonosis Research Institute, Chonbuk National University, Iksan, Jeonbuk, Republic of Korea
- Department of Bioactive Material Sciences, Chonbuk National University, Jeonju, Jeonbuk, Republic of Korea
| |
Collapse
|
8
|
Sacchi P, Rasero R, Ru G, Aiassa E, Colussi S, Ingravalle F, Peletto S, Perrotta MG, Sartore S, Soglia D, Acutis P. Predicting the impact of selection for scrapie resistance on PRNP genotype frequencies in goats. Vet Res 2018; 49:26. [PMID: 29510738 PMCID: PMC5840724 DOI: 10.1186/s13567-018-0518-x] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2017] [Accepted: 02/03/2018] [Indexed: 11/10/2022] Open
Abstract
The European Union has implemented breeding programmes to increase scrapie resistance in sheep. A similar approach can be applied also in goats since the K222 allele provides a level of resistance equivalent to that of ARR in sheep. The European Food Safety Authority stated that breeding for resistance could be offered as an option for Member States to control classical scrapie in goats. We assessed the impact of different breeding strategies on PRNP genotype frequencies using a mathematical model that describes in detail the evolution of K222 in two goat breeds, Chamois Coloured and Saanen. Different patterns of age structure and replacement rate were modelled as factors affecting response to selection. Breeding for scrapie resistance can be implemented in goats, even though the initial K222 frequencies in these breeds are not particularly favourable and the rate at which the resistant animals increase, both breeding and slaughtered for meat production, is slow. If the goal is not to achieve the fixation of resistance allele, it is advisable to carry out selection only until a desired frequency of K222-carriers has been attained. Nucleus selection vs. selection on the overall populations is less expensive but takes longer to reach the desired output. The programme performed on the two goat breeds serves as a model of the response the selection could have in other breeds that show different initial frequencies and population structure. In this respect, the model has a general applicability.
Collapse
Affiliation(s)
- Paola Sacchi
- Department of Veterinary Science, Torino University, Turin, Italy
| | - Roberto Rasero
- Department of Veterinary Science, Torino University, Turin, Italy
| | - Giuseppe Ru
- Italian Reference Centre for Animal Transmissible Spongiform Encephalopathies, Istituto Zooprofilattico Sperimentale Piemonte, Liguria e Valle d’Aosta, Turin, Italy
| | - Eleonora Aiassa
- Italian Reference Centre for Animal Transmissible Spongiform Encephalopathies, Istituto Zooprofilattico Sperimentale Piemonte, Liguria e Valle d’Aosta, Turin, Italy
| | - Silvia Colussi
- Italian Reference Centre for Animal Transmissible Spongiform Encephalopathies, Istituto Zooprofilattico Sperimentale Piemonte, Liguria e Valle d’Aosta, Turin, Italy
| | - Francesco Ingravalle
- Italian Reference Centre for Animal Transmissible Spongiform Encephalopathies, Istituto Zooprofilattico Sperimentale Piemonte, Liguria e Valle d’Aosta, Turin, Italy
| | - Simone Peletto
- Italian Reference Centre for Animal Transmissible Spongiform Encephalopathies, Istituto Zooprofilattico Sperimentale Piemonte, Liguria e Valle d’Aosta, Turin, Italy
| | - Maria Gabriella Perrotta
- Direzione generale della sanità animale e dei farmaci veterinari, Ministero della Salute, Rome, Italy
| | - Stefano Sartore
- Department of Veterinary Science, Torino University, Turin, Italy
| | - Dominga Soglia
- Department of Veterinary Science, Torino University, Turin, Italy
| | - Pierluigi Acutis
- Italian Reference Centre for Animal Transmissible Spongiform Encephalopathies, Istituto Zooprofilattico Sperimentale Piemonte, Liguria e Valle d’Aosta, Turin, Italy
| |
Collapse
|
9
|
Cinar MU, Schneider DA, Waldron DF, O'Rourke KI, White SN. Goats singly heterozygous for PRNP S146 or K222 orally inoculated with classical scrapie at birth show no disease at ages well beyond 6 years. Vet J 2018; 233:19-24. [PMID: 29486874 DOI: 10.1016/j.tvjl.2017.12.019] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2017] [Revised: 12/21/2017] [Accepted: 12/23/2017] [Indexed: 10/18/2022]
Abstract
Scrapie is a transmissible spongiform encephalopathy of sheep and goats, and scrapie eradication programs in many parts of the world rely on strong genetic resistance to classical scrapie in sheep. However, the utility of putative resistance alleles in goats has been a focus of research because goats can transmit scrapie to sheep and may serve as a scrapie reservoir. Prior work showed that disease-free survival time was significantly extended in orally inoculated goats singly heterozygous for prion amino acid substitutions S146 or K222, but average durations were only around 3 years post-inoculation. The aim of this study was to investigate whether extended survival would exceed 6 years, which represents the productive lifetimes of most commercial goats. While all control homozygotes were clinically affected by an average of <2 years, none of the NS146 or QK222 goats developed clinical scrapie or had PrPSc-positive rectal biopsies. Several NS146 and QK222 goats developed other conditions unrelated to scrapie, but tissue accumulation of PrPSc was not detected in any of these animals. The NS146 heterozygotes have remained disease-free for an average of 2734days (approximately 7.5 years), the longest duration of any classical scrapie challenge experiment with any genotype to date. The QK222 heterozygotes have remained disease-free for an average of 2450days (approximately 6.7 years), the longest reported average duration for QK222 goats challenged with classical scrapie. This research is ongoing, but the current results demonstrate S146 and K222 confer strong resistance to classical scrapie in goats.
Collapse
Affiliation(s)
- M U Cinar
- Department of Veterinary Microbiology and Pathology, Washington State University, 3003 ADBF, WSU, Pullman, WA 99164, USA; Erciyes University, Faculty of Agriculture, Department of Animal Science, Kayseri 38039, Turkey
| | - D A Schneider
- Department of Veterinary Microbiology and Pathology, Washington State University, 3003 ADBF, WSU, Pullman, WA 99164, USA; United States Department of Agriculture, Agricultural Research Service, Animal Disease Research Unit, 3003 ADBF, WSU, Pullman, WA 99164, USA
| | - D F Waldron
- Texas AgriLife Research, San Angelo, TX 76901, USA
| | - K I O'Rourke
- Department of Veterinary Microbiology and Pathology, Washington State University, 3003 ADBF, WSU, Pullman, WA 99164, USA; United States Department of Agriculture, Agricultural Research Service, Animal Disease Research Unit, 3003 ADBF, WSU, Pullman, WA 99164, USA
| | - S N White
- Department of Veterinary Microbiology and Pathology, Washington State University, 3003 ADBF, WSU, Pullman, WA 99164, USA; United States Department of Agriculture, Agricultural Research Service, Animal Disease Research Unit, 3003 ADBF, WSU, Pullman, WA 99164, USA; Center for Reproductive Biology, Washington State University, 3003 ADBF, WSU, Pullman, WA 99164, USA.
| |
Collapse
|
10
|
Abstract
Scrapie was the first prion disease to be recognised and the study of this disease in sheep and goats has provided a wealth of information not only for scrapie but also for the other prion diseases. All prion diseases are under strong genetic control of the prion gene PRNP, independent of whether they are typical or atypical scrapie and which of the different prion strains is causing infection. Decades of studies using experimental disease challenges and field surveys have established disease association models, in which species-specific amino acid variations in the prion or PrP protein, encoded by the PRNP gene, can predict disease susceptibility or resistance. PRNP genetics represents an important and successful basis for implementing scrapie eradication strategies in sheep and goats. In general terms these studies have revealed that there appear to be many more amino acid changes in PrP leading to increased resistance than to higher susceptibility. Most changes are in the globular part of PrP protein and three regions appear to have major influence. This knowledge can be transferred into prion diseases of other species to facilitate genetic control strategies. However, an obstacle remains with the lack of fully understanding the underlying molecular mechanism, impeding our ability to deal with the difference in the genetic control between typical and atypical forms of scrapie or to predict association in newly infected species. This chapter will discuss the advances in both typical and atypical scrapie from a genetic perspective.
Collapse
Affiliation(s)
- Wilfred Goldmann
- Neurobiology Division, The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush, United Kingdom.
| |
Collapse
|
11
|
Effect of Polymorphisms at Codon 146 of the Goat PRNP Gene on Susceptibility to Challenge with Classical Scrapie by Different Routes. J Virol 2017; 91:JVI.01142-17. [PMID: 28878088 DOI: 10.1128/jvi.01142-17] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2017] [Accepted: 08/16/2017] [Indexed: 01/21/2023] Open
Abstract
This report presents the results of experimental challenges of goats with scrapie by both the intracerebral (i.c.) and oral routes, exploring the effects of polymorphisms at codon 146 of the goat PRNP gene on resistance to disease. The results of these studies illustrate that while goats of all genotypes can be infected by i.c. challenge, the survival distribution of the animals homozygous for asparagine at codon 146 was significantly shorter than those of animals of all other genotypes (chi-square value, 10.8; P = 0.001). In contrast, only those animals homozygous for asparagine at codon 146 (NN animals) succumbed to oral challenge. The results also indicate that any cases of infection in non-NN animals can be detected by the current confirmatory test (immunohistochemistry), although successful detection with the rapid enzyme-linked immunosorbent assay (ELISA) was more variable and dependent on the polymorphism. Together with data from previous studies of goats exposed to infection in the field, these data support the previously reported observations that polymorphisms at this codon have a profound effect on susceptibility to disease. It is concluded that only animals homozygous for asparagine at codon 146 succumb to scrapie under natural conditions.IMPORTANCE In goats, like in sheep, there are PRNP polymorphisms that are associated with susceptibility or resistance to scrapie. However, in contrast to the polymorphisms in sheep, they are more numerous in goats and may be restricted to certain breeds or geographical regions. Therefore, eradication programs must be specifically designed depending on the identification of suitable polymorphisms. An initial analysis of surveillance data suggested that such a polymorphism in Cypriot goats may lie in codon 146. In this study, we demonstrate experimentally that NN animals are highly susceptible after i.c. inoculation. The presence of a D or S residue prolonged incubation periods significantly, and prions were detected in peripheral tissues only in NN animals. In oral challenges, prions were detected only in NN animals, and the presence of a D or S residue at this position conferred resistance to the disease. This study provides an experimental transmission model for assessing the genetic susceptibility of goats to scrapie.
Collapse
|
12
|
Ricci A, Allende A, Bolton D, Chemaly M, Davies R, Fernández Escámez PS, Gironés R, Herman L, Koutsoumanis K, Lindqvist R, Nørrung B, Robertson L, Ru G, Sanaa M, Skandamis P, Speybroeck N, Simmons M, Kuile BT, Threlfall J, Wahlström H, Acutis PL, Andreoletti O, Goldmann W, Langeveld J, Windig JJ, Ortiz Pelaez A, Snary E. Genetic resistance to transmissible spongiform encephalopathies (TSE) in goats. EFSA J 2017; 15:e04962. [PMID: 32625625 PMCID: PMC7010077 DOI: 10.2903/j.efsa.2017.4962] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023] Open
Abstract
Breeding programmes to promote resistance to classical scrapie, similar to those for sheep in existing transmissible spongiform encephalopathies (TSE) regulations, have not been established in goats. The European Commission requested a scientific opinion from EFSA on the current knowledge of genetic resistance to TSE in goats. An evaluation tool, which considers both the weight of evidence and strength of resistance to classical scrapie of alleles in the goat PRNP gene, was developed and applied to nine selected alleles of interest. Using the tool, the quality and certainty of the field and experimental data are considered robust enough to conclude that the K222, D146 and S146 alleles both confer genetic resistance against classical scrapie strains known to occur naturally in the EU goat population, with which they have been challenged both experimentally and under field conditions. The weight of evidence for K222 is greater than that currently available for the D146 and S146 alleles and for the ARR allele in sheep in 2001. Breeding for resistance can be an effective tool for controlling classical scrapie in goats and it could be an option available to member states, both at herd and population levels. There is insufficient evidence to assess the impact of K222, D146 and S146 alleles on susceptibility to atypical scrapie and bovine spongiform encephalopathy (BSE), or on health and production traits. These alleles are heterogeneously distributed across the EU Member States and goat breeds, but often at low frequencies (< 10%). Given these low frequencies, high selection pressure may have an adverse effect on genetic diversity so any breeding for resistance programmes should be developed at Member States, rather than EU level and their impact monitored, with particular attention to the potential for any negative impact in rare or small population breeds.
Collapse
|
13
|
Meydan H, Pehlivan E, Özkan MM, Yildiz MA, Goldmann W. Prion protein gene polymorphisms in Turkish native goat breeds. J Genet 2017; 96:299-305. [PMID: 28674229 DOI: 10.1007/s12041-017-0763-1] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Abstract
Susceptibility to 'scrapie' disease in goats is influenced by polymorphisms of the prion protein (PRNP) gene. The aim of this study was to identify PRNP gene polymorphisms in a total of 356 scrapie disease-free goats from 10 Turkish native breeds. Eighteen single-nucleotide polymorphisms were detected in the caprine PRNP open-reading frame. Ten previously described amino acid substitutions (I142M, H143R, N146S, N146D, R151H, R154H, P168Q, R211Q, Q222K and P240S) and two novel dimorphisms (G134E and Q163P) were identified. The strongest association between caprine PRNP and relative resistance to scrapie disease has been reported previously for polymorphisms at codons 146 (S/D) and 222 (K). In the present study, these three PrP variants were relatively rare with 6.3%. This is the first report on PRNP gene variation in Turkish native goat breeds and our knowledge of these polymorphisms will assist goat breeding programmes to reduce the risk of scrapie.
Collapse
Affiliation(s)
- Hasan Meydan
- Department of Agricultural Biotechnology, Akdeniz University, 07058, Antalya, Turkey.
| | | | | | | | | |
Collapse
|
14
|
Acín C, Pitarch JL. Controlling scrapie and bovine spongiform encephalopathy in goats. Vet Rec 2016; 178:166-7. [PMID: 26868240 DOI: 10.1136/vr.i702] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
Affiliation(s)
- Cristina Acín
- Research Centre for TSE and Emerging Transmissible Diseases, University of Zaragoza, Zaragoza 50013, Spain e-mail:
| | - José Luis Pitarch
- Research Centre for TSE and Emerging Transmissible Diseases, University of Zaragoza, Zaragoza 50013, Spain e-mail:
| |
Collapse
|