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For: Dillon MM, Sung W, Lynch M, Cooper VS. Periodic Variation of Mutation Rates in Bacterial Genomes Associated with Replication Timing. mBio 2018;9:e01371-18. [PMID: 30131359 DOI: 10.1128/mBio.01371-18] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]  Open
Number Cited by Other Article(s)
1
Torrance EL, Diop A, Bobay LM. Homologous Recombination Shapes the Architecture and Evolution of Bacterial Genomes. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.05.31.596828. [PMID: 38895235 PMCID: PMC11185547 DOI: 10.1101/2024.05.31.596828] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/21/2024]
2
Horton JS, Taylor TB. Mutation bias and adaptation in bacteria. MICROBIOLOGY (READING, ENGLAND) 2023;169. [PMID: 37943288 DOI: 10.1099/mic.0.001404] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/10/2023]
3
Cano AV, Gitschlag BL, Rozhoňová H, Stoltzfus A, McCandlish DM, Payne JL. Mutation bias and the predictability of evolution. Philos Trans R Soc Lond B Biol Sci 2023;378:20220055. [PMID: 37004719 PMCID: PMC10067271 DOI: 10.1098/rstb.2022.0055] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/04/2023]  Open
4
Patton DL, Cardenas T, Mele P, Navarro J, Sung W. CDMAP/CDVIS: context-dependent mutation analysis package and visualization software. G3 (BETHESDA, MD.) 2022;13:6887836. [PMID: 36917690 PMCID: PMC10085751 DOI: 10.1093/g3journal/jkac299] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/10/2022] [Accepted: 10/17/2022] [Indexed: 12/15/2022]
5
Mahilkar A, Raj N, Kemkar S, Saini S. Selection in a growing colony biases results of mutation accumulation experiments. Sci Rep 2022;12:15470. [PMID: 36104390 PMCID: PMC9475022 DOI: 10.1038/s41598-022-19928-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2022] [Accepted: 09/06/2022] [Indexed: 11/11/2022]  Open
6
Bhat D, Hauf S, Plessy C, Yokobayashi Y, Pigolotti S. Speed variations of bacterial replisomes. eLife 2022;11:75884. [PMID: 35877175 PMCID: PMC9385209 DOI: 10.7554/elife.75884] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2021] [Accepted: 07/13/2022] [Indexed: 11/13/2022]  Open
7
Shepherd MJ, Horton JS, Taylor TB. A near-deterministic mutational hotspot in Pseudomonas fluorescens is constructed by multiple interacting genomic features. Mol Biol Evol 2022;39:msac132. [PMID: 35707979 PMCID: PMC9234803 DOI: 10.1093/molbev/msac132] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2022] [Revised: 05/27/2022] [Accepted: 06/06/2022] [Indexed: 01/12/2023]  Open
8
Waldvogel AM, Pfenninger M. Temperature dependence of spontaneous mutation rates. Genome Res 2021;31:1582-1589. [PMID: 34301628 PMCID: PMC8415371 DOI: 10.1101/gr.275168.120] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2020] [Accepted: 07/21/2021] [Indexed: 11/29/2022]
9
Maddamsetti R, Grant NA. Divergent Evolution of Mutation Rates and Biases in the Long-Term Evolution Experiment with Escherichia coli. Genome Biol Evol 2021;12:1591-1603. [PMID: 32853353 PMCID: PMC7523724 DOI: 10.1093/gbe/evaa178] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/21/2020] [Indexed: 12/20/2022]  Open
10
A lasting symbiosis: how Vibrio fischeri finds a squid partner and persists within its natural host. Nat Rev Microbiol 2021;19:654-665. [PMID: 34089008 DOI: 10.1038/s41579-021-00557-0] [Citation(s) in RCA: 59] [Impact Index Per Article: 19.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 03/31/2021] [Indexed: 01/10/2023]
11
Bacterial phenotypic heterogeneity in DNA repair and mutagenesis. Biochem Soc Trans 2021;48:451-462. [PMID: 32196548 PMCID: PMC7200632 DOI: 10.1042/bst20190364] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2020] [Revised: 02/26/2020] [Accepted: 02/28/2020] [Indexed: 02/06/2023]
12
Evolutionary Trajectory of the Replication Mode of Bacterial Replicons. mBio 2021;12:mBio.02745-20. [PMID: 33500342 PMCID: PMC7858055 DOI: 10.1128/mbio.02745-20] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]  Open
13
Lato DF, Golding GB. The Location of Substitutions and Bacterial Genome Arrangements. Genome Biol Evol 2020;13:6035136. [PMID: 33320172 PMCID: PMC7851589 DOI: 10.1093/gbe/evaa260] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 12/11/2020] [Indexed: 01/09/2023]  Open
14
Schroeder JW, Sankar TS, Wang JD, Simmons LA. The roles of replication-transcription conflict in mutagenesis and evolution of genome organization. PLoS Genet 2020;16:e1008987. [PMID: 32853297 PMCID: PMC7451550 DOI: 10.1371/journal.pgen.1008987] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
15
Cooper VS, Honsa E, Rowe H, Deitrick C, Iverson AR, Whittall JJ, Neville SL, McDevitt CA, Kietzman C, Rosch JW. Experimental Evolution In Vivo To Identify Selective Pressures during Pneumococcal Colonization. mSystems 2020;5:e00352-20. [PMID: 32398278 PMCID: PMC7219553 DOI: 10.1128/msystems.00352-20] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2020] [Accepted: 04/30/2020] [Indexed: 12/20/2022]  Open
16
Chabas H, Nicot A, Meaden S, Westra ER, Tremblay DM, Pradier L, Lion S, Moineau S, Gandon S. Variability in the durability of CRISPR-Cas immunity. Philos Trans R Soc Lond B Biol Sci 2020;374:20180097. [PMID: 30905283 DOI: 10.1098/rstb.2018.0097] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]  Open
17
Ramiro RS, Durão P, Bank C, Gordo I. Low mutational load and high mutation rate variation in gut commensal bacteria. PLoS Biol 2020;18:e3000617. [PMID: 32155146 PMCID: PMC7064181 DOI: 10.1371/journal.pbio.3000617] [Citation(s) in RCA: 40] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2019] [Accepted: 02/05/2020] [Indexed: 12/14/2022]  Open
18
Kivisaar M. Mutation and Recombination Rates Vary Across Bacterial Chromosome. Microorganisms 2019;8:microorganisms8010025. [PMID: 31877811 PMCID: PMC7023495 DOI: 10.3390/microorganisms8010025] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2019] [Revised: 12/18/2019] [Accepted: 12/19/2019] [Indexed: 12/22/2022]  Open
19
Integration Host Factor IHF facilitates homologous recombination and mutagenic processes in Pseudomonas putida. DNA Repair (Amst) 2019;85:102745. [PMID: 31715424 DOI: 10.1016/j.dnarep.2019.102745] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2019] [Revised: 10/25/2019] [Accepted: 10/31/2019] [Indexed: 12/14/2022]
20
Niccum BA, Lee H, MohammedIsmail W, Tang H, Foster PL. The Symmetrical Wave Pattern of Base-Pair Substitution Rates across the Escherichia coli Chromosome Has Multiple Causes. mBio 2019;10:e01226-19. [PMID: 31266871 PMCID: PMC6606806 DOI: 10.1128/mbio.01226-19] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2019] [Accepted: 05/28/2019] [Indexed: 01/28/2023]  Open
21
Fitzgerald DM, Rosenberg SM. What is mutation? A chapter in the series: How microbes "jeopardize" the modern synthesis. PLoS Genet 2019;15:e1007995. [PMID: 30933985 PMCID: PMC6443146 DOI: 10.1371/journal.pgen.1007995] [Citation(s) in RCA: 34] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]  Open
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