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Qiu Y, Wang P, Zhang L, Li C, Lu J, Ren L. Enhancing biodegradation efficiency of PLA/PBAT-ST20 bioplastic using thermophilic bacteria co-culture system: New insight from structural characterization, enzyme activity, and metabolic pathways. JOURNAL OF HAZARDOUS MATERIALS 2024; 477:135426. [PMID: 39106720 DOI: 10.1016/j.jhazmat.2024.135426] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2024] [Revised: 08/01/2024] [Accepted: 08/02/2024] [Indexed: 08/09/2024]
Abstract
The rising utilization of PLA/PBAT-ST20 presents potential ecological risks stemming from its casual disposal and incomplete degradation. To solve this problem, this study investigated the degradation capabilities of PLA/PBAT-ST20 by a co-culture system comprising two thermophilic bacteria, Pseudomonas G1 and Kocuria G2, selected and identified from the thermophilic phase of compost. Structural characterization results revealed that the strains colonized the PLA/PBAT-ST20's surface, causing holes and cracks, with an increase in the carbonyl index (CI) and polydispersity index (PDI), indicating oxidative degradation. Enzyme activity results demonstrated that the co-culture system significantly enhanced the secretion and activity of proteases and lipases, promoting the breakdown of ester bonds. LC-QTOF-MS results showed that various intermediate products were obtained after degradation, ultimately participating in the TCA cycle (ko00020), further completely mineralized. Additionally, after 15-day compost, the co-culture system achieved a degradation rate of 72.14 ± 2.1 wt% for PBAT/PLA-ST20 films, with a decrease in the abundance of plastic fragments of all sizes, demonstrating efficient degradation of PLA/PBAT-ST20 films. This study highlights the potential of thermophilic bacteria to address plastic pollution through biodegradation and emphasizes that the co-culture system could serve as an ideal solution for the remediation of PLA/PBAT plastics.
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Affiliation(s)
- Yizhan Qiu
- School of Light Industry Science and Engineering, Beijing Technology and Business University, Beijing 100048, China; State Environmental Protection Key Laboratory of Food Chain Pollution Control, Beijing Technology and Business University, Beijing 100048, China; Key Laboratory of Cleaner Production and Integrated Resource Utilization of China National Light Industry, Beijing Technology and Business University, Beijing 100048, China; Beijing Key Laboratory of Farmland Soil Pollution Prevention and Remediation, College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, China
| | - Pan Wang
- School of Light Industry Science and Engineering, Beijing Technology and Business University, Beijing 100048, China; State Environmental Protection Key Laboratory of Food Chain Pollution Control, Beijing Technology and Business University, Beijing 100048, China; Key Laboratory of Cleaner Production and Integrated Resource Utilization of China National Light Industry, Beijing Technology and Business University, Beijing 100048, China
| | - Luxi Zhang
- School of Light Industry Science and Engineering, Beijing Technology and Business University, Beijing 100048, China
| | - Chunmei Li
- Department of Endocrinology and Metabolism, Peking University People's Hospital, Beijing 100044, China
| | - Jiaxin Lu
- School of Light Industry Science and Engineering, Beijing Technology and Business University, Beijing 100048, China; State Environmental Protection Key Laboratory of Food Chain Pollution Control, Beijing Technology and Business University, Beijing 100048, China; Key Laboratory of Cleaner Production and Integrated Resource Utilization of China National Light Industry, Beijing Technology and Business University, Beijing 100048, China.
| | - Lianhai Ren
- School of Light Industry Science and Engineering, Beijing Technology and Business University, Beijing 100048, China; State Environmental Protection Key Laboratory of Food Chain Pollution Control, Beijing Technology and Business University, Beijing 100048, China; Key Laboratory of Cleaner Production and Integrated Resource Utilization of China National Light Industry, Beijing Technology and Business University, Beijing 100048, China.
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2
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Di Gregorio S, Niccolini L, Seggiani M, Strangis G, Barbani N, Vitiello V, Becarelli S, Petroni G, Yan X, Buttino I. Marine copepod culture as a potential source of bioplastic-degrading microbiome: The case of poly(butylene succinate-co-adipate). CHEMOSPHERE 2024; 362:142603. [PMID: 38885765 DOI: 10.1016/j.chemosphere.2024.142603] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/12/2023] [Revised: 05/21/2024] [Accepted: 06/11/2024] [Indexed: 06/20/2024]
Abstract
The poly(butylene succinate-co-adipate) (PBSA) is emerging as environmentally sustainable polyester for applications in marine environment. In this work the capacity of microbiome associated with marine plankton culture to degrade PBSA, was tested. A taxonomic and functional characterization of the microbiome associated with the copepod Acartia tonsa, reared in controlled conditions, was analysed by 16S rDNA metabarcoding, in newly-formed adult stages and after 7 d of incubation. A predictive functional metagenomic profile was inferred for hydrolytic activities involved in bioplastic degradation with a particular focus on PBSA. The copepod-microbiome was also characterized in newly-formed carcasses of A. tonsa, and after 7 and 33 d of incubation in the plankton culture medium. Copepod-microbiome showed hydrolytic activities at all developmental stages of the alive copepods and their carcasses, however, the evenness of the hydrolytic bacterial community significantly increased with the time of incubation in carcasses. Microbial genera, never described in association with copepods: Devosia, Kordia, Lentibacter, Methylotenera, Rheinheimera, Marinagarivorans, Paraglaciecola, Pseudophaeobacter, Gaiella, Streptomyces and Kribbella sps., were retrieved. Kribbella sp. showed carboxylesterase activity and Streptomyces sp. showed carboxylesterase, triacylglycerol lipase and cutinase activities, that might be involved in PBSA degradation. A culturomic approach, adopted to isolate bacterial specimen from carcasses, led to the isolation of the bacterial strain, Vibrio sp. 01 tested for the capacity to promote the hydrolysis of the ester bonds. Granules of PBSA, incubated 82 d at 20 °C with Vibrio sp. 01, were characterized by scanning electron microscopy, infrared spectroscopy, thermogravimetric analysis, and differential scanning calorimetry, showing fractures compared to the control sample, and hydrolysis of ester bonds. These preliminary results are encouraging for further investigation on the ability of the microbiome associated with plankton to biodegrade polyesters, such as PBSA, and increasing knowledge on microorganisms involved in bioplastic degradation in marine environment.
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Affiliation(s)
- Simona Di Gregorio
- Department of Biology, University of Pisa, Via Luca Ghini 13, 56123, Pisa, Italy
| | - Luca Niccolini
- Department of Biology, University of Pisa, Via Luca Ghini 13, 56123, Pisa, Italy; Functional Biology and Plankton Genomic Lab. ISPRA - Italian Institute for Environmental Protection and Research, Via del Cedro n.38, 57122, Livorno, Italy
| | - Maurizia Seggiani
- Department of Civil and Industrial Engineering, University of Pisa, Largo Lucio Lazzarino 1, 56122, Pisa, Italy
| | - Giovanna Strangis
- Department of Civil and Industrial Engineering, University of Pisa, Largo Lucio Lazzarino 1, 56122, Pisa, Italy
| | - Niccoletta Barbani
- Department of Civil and Industrial Engineering, University of Pisa, Largo Lucio Lazzarino 1, 56122, Pisa, Italy
| | - Valentina Vitiello
- Functional Biology and Plankton Genomic Lab. ISPRA - Italian Institute for Environmental Protection and Research, Via del Cedro n.38, 57122, Livorno, Italy; Sino-Italian Joint Laboratory Functional Biology of Marine Biota, ISPRA, 57122, Livorno, Italy
| | - Simone Becarelli
- Department of Biology, University of Pisa, Via Luca Ghini 13, 56123, Pisa, Italy
| | - Giulio Petroni
- Department of Biology, University of Pisa, Via Luca Ghini 13, 56123, Pisa, Italy
| | - Xiaojun Yan
- Sino-Italian Joint Laboratory Functional Biology of Marine Biota, ISPRA, 57122, Livorno, Italy; Laboratory of Marine Biological Resources and Molecular Engineering, Marine Science and Technical College, Zhejiang Ocean University, Zhoushan City, 316022, Zhejiang, China
| | - Isabella Buttino
- Functional Biology and Plankton Genomic Lab. ISPRA - Italian Institute for Environmental Protection and Research, Via del Cedro n.38, 57122, Livorno, Italy; Sino-Italian Joint Laboratory Functional Biology of Marine Biota, ISPRA, 57122, Livorno, Italy.
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3
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Ventura E, Marín A, Gámez-Pérez J, Cabedo L. Recent advances in the relationships between biofilms and microplastics in natural environments. World J Microbiol Biotechnol 2024; 40:220. [PMID: 38809290 PMCID: PMC11136731 DOI: 10.1007/s11274-024-04021-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/29/2024] [Accepted: 05/10/2024] [Indexed: 05/30/2024]
Abstract
Plastic pollution in the form of microplastics (MPs), poses a significant threat to natural ecosystems, with detrimental ecological, social, and economic impacts. This review paper aims to provide an overview of the existing research on the interaction between microbial biofilms and MPs in natural environments. The review begins by outlining the sources and types of MPs, emphasizing their widespread presence in marine, freshwater, and terrestrial ecosystems. It then discusses the formation and characteristics of microbial biofilms on MPs surfaces, highlighting their role in altering the physicochemical properties of MPs and facilitating processes such as vertical transport, biodegradation, dispersion of microorganisms, and gene transfer. Different methods used to assess these interactions are discussed, including microbiological and physicochemical characterization. Current gaps and challenges in understanding the complex relationships between biofilms and MPs are identified, highlighting the need for further research to elucidate the mechanisms underlying these complex interactions and to develop effective mitigation strategies. Innovative solutions, including bioremediation techniques and their combination with other strategies, such as nanotechnology, advanced filtration technologies, and public awareness campaigns, are proposed as promising approaches to address the issue of MPs pollution. Overall, this review underscores the urgent need for a multidisciplinary approach to combating MPs pollution, combining scientific research, technological innovation, and public engagement to safeguard the health and integrity of natural ecosystems.
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Affiliation(s)
- Eva Ventura
- Polymers and Advanced Materials Group (PIMA), Universitat Jaume I (UJI), Castelló de la Plana, Castellón, Spain
| | - Anna Marín
- Polymers and Advanced Materials Group (PIMA), Universitat Jaume I (UJI), Castelló de la Plana, Castellón, Spain
| | - José Gámez-Pérez
- Polymers and Advanced Materials Group (PIMA), Universitat Jaume I (UJI), Castelló de la Plana, Castellón, Spain
| | - Luis Cabedo
- Polymers and Advanced Materials Group (PIMA), Universitat Jaume I (UJI), Castelló de la Plana, Castellón, Spain.
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Ali Z, Abdullah M, Yasin MT, Amanat K, Ahmad K, Ahmed I, Qaisrani MM, Khan J. Organic waste-to-bioplastics: Conversion with eco-friendly technologies and approaches for sustainable environment. ENVIRONMENTAL RESEARCH 2024; 244:117949. [PMID: 38109961 DOI: 10.1016/j.envres.2023.117949] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/08/2023] [Revised: 11/24/2023] [Accepted: 12/12/2023] [Indexed: 12/20/2023]
Abstract
Petrochemical-based synthetic plastics poses a threat to humans, wildlife, marine life and the environment. Given the magnitude of eventual depletion of petrochemical sources and global environmental pollution caused by the manufacturing of synthetic plastics such as polyethylene (PET) and polypropylene (PP), it is essential to develop and adopt biopolymers as an environment friendly and cost-effective alternative to synthetic plastics. Research into bioplastics has been gaining traction as a way to create a more sustainable and eco-friendlier environment with a reduced environmental impact. Biodegradable bioplastics can have the same characteristics as traditional plastics while also offering additional benefits due to their low carbon footprint. Therefore, using organic waste from biological origin for bioplastic production not only reduces our reliance on edible feedstock but can also effectively assist with solid waste management. This review aims at providing an in-depth overview on recent developments in bioplastic-producing microorganisms, production procedures from various organic wastes using either pure or mixed microbial cultures (MMCs), microalgae, and chemical extraction methods. Low production yield and production costs are still the major bottlenecks to their deployment at industrial and commercial scale. However, their production and commercialization pose a significant challenge despite such potential. The major constraints are their production in small quantity, poor mechanical strength, lack of facilities and costly feed for industrial-scale production. This review further explores several methods for producing bioplastics with the aim of encouraging researchers and investors to explore ways to utilize these renewable resources in order to commercialize degradable bioplastics. Challenges, future prospects and Life cycle assessment of bioplastics are also highlighted. Utilizing a variety of bioplastics obtained from renewable and cost-effective sources (e.g., organic waste, agro-industrial waste, or microalgae) and determining the pertinent end-of-life option (e.g., composting or anaerobic digestion) may lead towards the right direction that assures the sustainable production of bioplastics.
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Affiliation(s)
- Zain Ali
- Institute of Biological Sciences, Khwaja Fareed University of Engineering & Information Technology, 64200, Rahim Yar Khan, Pakistan
| | - Muhammad Abdullah
- Institute of Biological Sciences, Khwaja Fareed University of Engineering & Information Technology, 64200, Rahim Yar Khan, Pakistan
| | - Muhammad Talha Yasin
- Institute of Biological Sciences, Khwaja Fareed University of Engineering & Information Technology, 64200, Rahim Yar Khan, Pakistan.
| | - Kinza Amanat
- Institute of Biological Sciences, Khwaja Fareed University of Engineering & Information Technology, 64200, Rahim Yar Khan, Pakistan.
| | - Khurshid Ahmad
- State Key Laboratory of Marine Food Processing & Safety Control, College of Food Science and Engineering, Ocean University of China, No.1299, Sansha Road, Qingdao, Shandong Province, 266404, P.R. China.
| | - Ishfaq Ahmed
- Haide College, Ocean University of China, Laoshan Campus, Qingdao, Shandong Province, 266100, PR China
| | - Muther Mansoor Qaisrani
- Institute of Biological Sciences, Khwaja Fareed University of Engineering & Information Technology, 64200, Rahim Yar Khan, Pakistan
| | - Jallat Khan
- Institute of Biological Sciences, Khwaja Fareed University of Engineering & Information Technology, 64200, Rahim Yar Khan, Pakistan; Institute of Chemistry, Khwaja Fareed University of Engineering and Information Technology (KFUEIT), 64200, Rahim Yar Khan, Pakistan.
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5
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Cuebas‐Irizarry MF, Grunden AM. Streptomyces spp. as biocatalyst sources in pulp and paper and textile industries: Biodegradation, bioconversion and valorization of waste. Microb Biotechnol 2024; 17:e14258. [PMID: 37017414 PMCID: PMC10832569 DOI: 10.1111/1751-7915.14258] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2022] [Revised: 03/14/2023] [Accepted: 03/21/2023] [Indexed: 04/06/2023] Open
Abstract
Complex polymers represent a challenge for remediating environmental pollution and an opportunity for microbial-catalysed conversion to generate valorized chemicals. Members of the genus Streptomyces are of interest because of their potential use in biotechnological applications. Their versatility makes them excellent sources of biocatalysts for environmentally responsible bioconversion, as they have a broad substrate range and are active over a wide range of pH and temperature. Most Streptomyces studies have focused on the isolation of strains, recombinant work and enzyme characterization for evaluating their potential for biotechnological application. This review discusses reports of Streptomyces-based technologies for use in the textile and pulp-milling industry and describes the challenges and recent advances aimed at achieving better biodegradation methods featuring these microbial catalysts. The principal points to be discussed are (1) Streptomyces' enzymes for use in dye decolorization and lignocellulosic biodegradation, (2) biotechnological processes for textile and pulp and paper waste treatment and (3) challenges and advances for textile and pulp and paper effluent treatment.
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Affiliation(s)
- Mara F. Cuebas‐Irizarry
- Department of Plant and Microbial BiologyNorth Carolina State UniversityPlant Sciences Building Rm 2323, 840 Oval DrRaleighNorth Carolina27606USA
| | - Amy M. Grunden
- Department of Plant and Microbial BiologyNorth Carolina State UniversityPlant Sciences Building Rm 2323, 840 Oval DrRaleighNorth Carolina27606USA
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6
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Herrera DAG, Mojicevic M, Pantelic B, Joshi A, Collins C, Batista M, Torres C, Freitas F, Murray P, Nikodinovic-Runic J, Brennan Fournet M. Exploring Microorganisms from Plastic-Polluted Sites: Unveiling Plastic Degradation and PHA Production Potential. Microorganisms 2023; 11:2914. [PMID: 38138058 PMCID: PMC10745504 DOI: 10.3390/microorganisms11122914] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2023] [Revised: 11/23/2023] [Accepted: 12/01/2023] [Indexed: 12/24/2023] Open
Abstract
The exposure of microorganisms to conventional plastics is a relatively recent occurrence, affording limited time for evolutionary adaptation. As part of the EU-funded project BioICEP, this study delves into the plastic degradation potential of microorganisms isolated from sites with prolonged plastic pollution, such as plastic-polluted forests, biopolymer-contaminated soil, oil-contaminated soil, municipal landfill, but also a distinctive soil sample with plastic pieces buried three decades ago. Additionally, samples from Arthropoda species were investigated. In total, 150 strains were isolated and screened for the ability to use plastic-related substrates (Impranil dispersions, polyethylene terephthalate, terephthalic acid, and bis(2-hydroxyethyl) terephthalate). Twenty isolates selected based on their ability to grow on various substrates were identified as Streptomyces, Bacillus, Enterococcus, and Pseudomonas spp. Morphological features were recorded, and the 16S rRNA sequence was employed to construct a phylogenetic tree. Subsequent assessments unveiled that 5 out of the 20 strains displayed the capability to produce polyhydroxyalkanoates, utilizing pre-treated post-consumer PET samples. With Priestia sp. DG69 and Neobacillus sp. DG40 emerging as the most successful producers (4.14% and 3.34% of PHA, respectively), these strains are poised for further utilization in upcycling purposes, laying the foundation for the development of sustainable strategies for plastic waste management.
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Affiliation(s)
- Diana A. Garza Herrera
- PRISM Research Institute, Technological University of the Shannon Midlands Midwest, N37HD68 Athlone, Ireland; (D.A.G.H.); (M.B.F.)
| | - Marija Mojicevic
- PRISM Research Institute, Technological University of the Shannon Midlands Midwest, N37HD68 Athlone, Ireland; (D.A.G.H.); (M.B.F.)
| | - Brana Pantelic
- Institute of Molecular Genetics and Genetic Engineering, University of Belgrade, Vojvode Stepe 444a, 11042 Belgrade, Serbia; (B.P.); (J.N.-R.)
| | - Akanksha Joshi
- Shannon Applied Biotechnology Centre, Midwest Campus, Technological University of the Shannon, V94EC5T Limerick, Ireland; (A.J.); (C.C.); (P.M.)
| | - Catherine Collins
- Shannon Applied Biotechnology Centre, Midwest Campus, Technological University of the Shannon, V94EC5T Limerick, Ireland; (A.J.); (C.C.); (P.M.)
| | - Maria Batista
- UCIBIO—Applied Molecular Biosciences Unit, Department of Chemistry, School of Science and Technology, NOVA University Lisbon, 2829-516 Lisbon, Portugal; (M.B.); (C.T.); (F.F.)
- Associate Laboratory i4HB—Institute for Health and Bioeconomy, School of Science and Technology, NOVA University Lisbon, 2829-516 Lisbon, Portugal
| | - Cristiana Torres
- UCIBIO—Applied Molecular Biosciences Unit, Department of Chemistry, School of Science and Technology, NOVA University Lisbon, 2829-516 Lisbon, Portugal; (M.B.); (C.T.); (F.F.)
- Associate Laboratory i4HB—Institute for Health and Bioeconomy, School of Science and Technology, NOVA University Lisbon, 2829-516 Lisbon, Portugal
| | - Filomena Freitas
- UCIBIO—Applied Molecular Biosciences Unit, Department of Chemistry, School of Science and Technology, NOVA University Lisbon, 2829-516 Lisbon, Portugal; (M.B.); (C.T.); (F.F.)
- Associate Laboratory i4HB—Institute for Health and Bioeconomy, School of Science and Technology, NOVA University Lisbon, 2829-516 Lisbon, Portugal
| | - Patrick Murray
- Shannon Applied Biotechnology Centre, Midwest Campus, Technological University of the Shannon, V94EC5T Limerick, Ireland; (A.J.); (C.C.); (P.M.)
| | - Jasmina Nikodinovic-Runic
- Institute of Molecular Genetics and Genetic Engineering, University of Belgrade, Vojvode Stepe 444a, 11042 Belgrade, Serbia; (B.P.); (J.N.-R.)
| | - Margaret Brennan Fournet
- PRISM Research Institute, Technological University of the Shannon Midlands Midwest, N37HD68 Athlone, Ireland; (D.A.G.H.); (M.B.F.)
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Zhang L, You H, Chen J, Huang B, Cui Y, Hossain KB, Chen Q, Cai M, Qian Q. Surface structures changes and biofilm communities development of degradable plastics during aging in coastal seawater. MARINE POLLUTION BULLETIN 2023; 193:114996. [PMID: 37301614 DOI: 10.1016/j.marpolbul.2023.114996] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/21/2023] [Revised: 04/17/2023] [Accepted: 04/25/2023] [Indexed: 06/12/2023]
Abstract
Biodegradable plastics (BPs) are a suitable alternative to conventional plastics. Still, their excessive or unplanned use may disrupt the abundance and community structure of the microbial population. To this end, a 58-day experiment in which biodegradable plastic objects, such as bags and boxes, were exposed to near-coastal seawater was conducted. They also assessed how they affected the diversity and organization of bacterial populations in seawater and on the surface of BPs products. It is evident that after the exposure time, both BP's bag and box products deteriorate in the ocean to varying degrees. The results of high-throughput sequencing of bacterial communities in seawater and those colonized on BPs products reveal significant differences in microbial community structures between seawater and BPs plastic samples. These suggest that the degradation of biodegradable plastics is shadowed by microorganisms and exposure time, while BP products influence the structural characteristics of microbial communities.
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Affiliation(s)
- Lin Zhang
- College of Environmental and Resource Sciences, College of Carbon Neutral Modern Industry, Fujian Normal University, Fuzhou 350117, China; Engineering Research Center of Polymer Green Recycling of Ministry of Education, Fujian Normal University, Fuzhou 350117, China
| | - Huimin You
- State Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen 361102, China; Coastal and Ocean Management Institute, Xiamen University, Xiamen 361102, China; College of Environment and Ecology, Xiamen University, Xiamen 361102, China
| | - Jianfei Chen
- College of Environmental and Resource Sciences, College of Carbon Neutral Modern Industry, Fujian Normal University, Fuzhou 350117, China; Engineering Research Center of Polymer Green Recycling of Ministry of Education, Fujian Normal University, Fuzhou 350117, China
| | - Baoquan Huang
- College of Environmental and Resource Sciences, College of Carbon Neutral Modern Industry, Fujian Normal University, Fuzhou 350117, China; Engineering Research Center of Polymer Green Recycling of Ministry of Education, Fujian Normal University, Fuzhou 350117, China
| | - Yaozong Cui
- College of Ocean and Earth Sciences, Xiamen University, Xiamen 361102, China
| | - Kazi Belayet Hossain
- State Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen 361102, China; Coastal and Ocean Management Institute, Xiamen University, Xiamen 361102, China; College of Environment and Ecology, Xiamen University, Xiamen 361102, China
| | - Qinghua Chen
- College of Environmental and Resource Sciences, College of Carbon Neutral Modern Industry, Fujian Normal University, Fuzhou 350117, China; Engineering Research Center of Polymer Green Recycling of Ministry of Education, Fujian Normal University, Fuzhou 350117, China
| | - Minggang Cai
- State Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen 361102, China; Coastal and Ocean Management Institute, Xiamen University, Xiamen 361102, China; College of Ocean and Earth Sciences, Xiamen University, Xiamen 361102, China; Fujian Provincial Key Laboratory for Coastal Ecology and Environmental Studies, Xiamen University, Xiamen 361102, China.
| | - Qingrong Qian
- College of Environmental and Resource Sciences, College of Carbon Neutral Modern Industry, Fujian Normal University, Fuzhou 350117, China; Engineering Research Center of Polymer Green Recycling of Ministry of Education, Fujian Normal University, Fuzhou 350117, China.
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8
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Rüthi J, Cerri M, Brunner I, Stierli B, Sander M, Frey B. Discovery of plastic-degrading microbial strains isolated from the alpine and Arctic terrestrial plastisphere. Front Microbiol 2023; 14:1178474. [PMID: 37234546 PMCID: PMC10206078 DOI: 10.3389/fmicb.2023.1178474] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2023] [Accepted: 04/06/2023] [Indexed: 05/28/2023] Open
Abstract
Increasing plastic production and the release of some plastic in to the environment highlight the need for circular plastic economy. Microorganisms have a great potential to enable a more sustainable plastic economy by biodegradation and enzymatic recycling of polymers. Temperature is a crucial parameter affecting biodegradation rates, but so far microbial plastic degradation has mostly been studied at temperatures above 20°C. Here, we isolated 34 cold-adapted microbial strains from the plastisphere using plastics buried in alpine and Arctic soils during laboratory incubations as well as plastics collected directly from Arctic terrestrial environments. We tested their ability to degrade, at 15°C, conventional polyethylene (PE) and the biodegradable plastics polyester-polyurethane (PUR; Impranil®); ecovio® and BI-OPL, two commercial plastic films made of polybutylene adipate-co-terephthalate (PBAT) and polylactic acid (PLA); pure PBAT; and pure PLA. Agar clearing tests indicated that 19 strains had the ability to degrade the dispersed PUR. Weight-loss analysis showed degradation of the polyester plastic films ecovio® and BI-OPL by 12 and 5 strains, respectively, whereas no strain was able to break down PE. NMR analysis revealed significant mass reduction of the PBAT and PLA components in the biodegradable plastic films by 8 and 7 strains, respectively. Co-hydrolysis experiments with a polymer-embedded fluorogenic probe revealed the potential of many strains to depolymerize PBAT. Neodevriesia and Lachnellula strains were able to degrade all the tested biodegradable plastic materials, making these strains especially promising for future applications. Further, the composition of the culturing medium strongly affected the microbial plastic degradation, with different strains having different optimal conditions. In our study we discovered many novel microbial taxa with the ability to break down biodegradable plastic films, dispersed PUR, and PBAT, providing a strong foundation to underline the role of biodegradable polymers in a circular plastic economy.
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Affiliation(s)
- Joel Rüthi
- Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf, Switzerland
- Institute of Biogeochemistry and Pollutant Dynamics, Swiss Federal Institute of Technology ETH, Zurich, Switzerland
| | - Mattia Cerri
- Institute of Biogeochemistry and Pollutant Dynamics, Swiss Federal Institute of Technology ETH, Zurich, Switzerland
| | - Ivano Brunner
- Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf, Switzerland
| | - Beat Stierli
- Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf, Switzerland
| | - Michael Sander
- Institute of Biogeochemistry and Pollutant Dynamics, Swiss Federal Institute of Technology ETH, Zurich, Switzerland
| | - Beat Frey
- Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf, Switzerland
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9
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Tournier V, Duquesne S, Guillamot F, Cramail H, Taton D, Marty A, André I. Enzymes' Power for Plastics Degradation. Chem Rev 2023; 123:5612-5701. [PMID: 36916764 DOI: 10.1021/acs.chemrev.2c00644] [Citation(s) in RCA: 56] [Impact Index Per Article: 56.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/16/2023]
Abstract
Plastics are everywhere in our modern way of living, and their production keeps increasing every year, causing major environmental concerns. Nowadays, the end-of-life management involves accumulation in landfills, incineration, and recycling to a lower extent. This ecological threat to the environment is inspiring alternative bio-based solutions for plastic waste treatment and recycling toward a circular economy. Over the past decade, considerable efforts have been made to degrade commodity plastics using biocatalytic approaches. Here, we provide a comprehensive review on the recent advances in enzyme-based biocatalysis and in the design of related biocatalytic processes to recycle or upcycle commodity plastics, including polyesters, polyamides, polyurethanes, and polyolefins. We also discuss scope and limitations, challenges, and opportunities of this field of research. An important message from this review is that polymer-assimilating enzymes are very likely part of the solution to reaching a circular plastic economy.
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Affiliation(s)
- Vincent Tournier
- Carbios, Parc Cataroux-Bâtiment B80, 8 rue de la Grolière, 63100 Clermont-Ferrand, France
| | - Sophie Duquesne
- Toulouse Biotechnology Institute, TBI, Université de Toulouse, CNRS, INRAE, INSA, Toulouse, France, 135, avenue de Rangueil, F-31077 Toulouse Cedex 04, France
| | - Frédérique Guillamot
- Carbios, Parc Cataroux-Bâtiment B80, 8 rue de la Grolière, 63100 Clermont-Ferrand, France
| | - Henri Cramail
- Université Bordeaux, CNRS, Bordeaux INP, LCPO, 16 Avenue Pey-Berland, 33600 Pessac, France
| | - Daniel Taton
- Université Bordeaux, CNRS, Bordeaux INP, LCPO, 16 Avenue Pey-Berland, 33600 Pessac, France
| | - Alain Marty
- Carbios, Parc Cataroux-Bâtiment B80, 8 rue de la Grolière, 63100 Clermont-Ferrand, France
| | - Isabelle André
- Toulouse Biotechnology Institute, TBI, Université de Toulouse, CNRS, INRAE, INSA, Toulouse, France, 135, avenue de Rangueil, F-31077 Toulouse Cedex 04, France
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10
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von Haugwitz G, Han X, Pfaff L, Li Q, Wei H, Gao J, Methling K, Ao Y, Brack Y, Mican J, Feiler CG, Weiss MS, Bednar D, Palm GJ, Lalk M, Lammers M, Damborsky J, Weber G, Liu W, Bornscheuer UT, Wei R. Structural Insights into (Tere)phthalate-Ester Hydrolysis by a Carboxylesterase and Its Role in Promoting PET Depolymerization. ACS Catal 2022; 12:15259-15270. [PMID: 36570084 PMCID: PMC9764356 DOI: 10.1021/acscatal.2c03772] [Citation(s) in RCA: 24] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2022] [Revised: 10/09/2022] [Indexed: 12/03/2022]
Abstract
TfCa, a promiscuous carboxylesterase from Thermobifida fusca, was found to hydrolyze polyethylene terephthalate (PET) degradation intermediates such as bis(2-hydroxyethyl) terephthalate (BHET) and mono-(2-hydroxyethyl)-terephthalate (MHET). In this study, we elucidated the structures of TfCa in its apo form, as well as in complex with a PET monomer analogue and with BHET. The structure-function relationship of TfCa was investigated by comparing its hydrolytic activity on various ortho- and para-phthalate esters of different lengths. Structure-guided rational engineering of amino acid residues in the substrate-binding pocket resulted in the TfCa variant I69W/V376A (WA), which showed 2.6-fold and 3.3-fold higher hydrolytic activity on MHET and BHET, respectively, than the wild-type enzyme. TfCa or its WA variant was mixed with a mesophilic PET depolymerizing enzyme variant [Ideonella sakaiensis PETase (IsPETase) PM] to degrade PET substrates of various crystallinity. The dual enzyme system with the wild-type TfCa or its WA variant produced up to 11-fold and 14-fold more terephthalate (TPA) than the single IsPETase PM, respectively. In comparison to the recently published chimeric fusion protein of IsPETase and MHETase, our system requires 10% IsPETase and one-fourth of the reaction time to yield the same amount of TPA under similar PET degradation conditions. Our simple dual enzyme system reveals further advantages in terms of cost-effectiveness and catalytic efficiency since it does not require time-consuming and expensive cross-linking and immobilization approaches.
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Affiliation(s)
- Gerlis von Haugwitz
- Department
of Biotechnology and Enzyme Catalysis, Institute of Biochemistry, University of Greifswald, Felix-Hausdorff-Str. 4, 17487 Greifswald, Germany
| | - Xu Han
- Tianjin
Institute of Industrial Biotechnology, Chinese
Academy of Sciences, 32 West 7th Avenue, Tianjin Airport Economic Area, Tianjin 300308, China,National
Technology Innovation Center of Synthetic Biology, 32 West 7th Avenue, Tianjin Airport Economic Area, Tianjin 300308, China
| | - Lara Pfaff
- Department
of Biotechnology and Enzyme Catalysis, Institute of Biochemistry, University of Greifswald, Felix-Hausdorff-Str. 4, 17487 Greifswald, Germany
| | - Qian Li
- Tianjin
Institute of Industrial Biotechnology, Chinese
Academy of Sciences, 32 West 7th Avenue, Tianjin Airport Economic Area, Tianjin 300308, China,National
Technology Innovation Center of Synthetic Biology, 32 West 7th Avenue, Tianjin Airport Economic Area, Tianjin 300308, China
| | - Hongli Wei
- Tianjin
Institute of Industrial Biotechnology, Chinese
Academy of Sciences, 32 West 7th Avenue, Tianjin Airport Economic Area, Tianjin 300308, China,National
Technology Innovation Center of Synthetic Biology, 32 West 7th Avenue, Tianjin Airport Economic Area, Tianjin 300308, China
| | - Jian Gao
- Tianjin
Institute of Industrial Biotechnology, Chinese
Academy of Sciences, 32 West 7th Avenue, Tianjin Airport Economic Area, Tianjin 300308, China,National
Technology Innovation Center of Synthetic Biology, 32 West 7th Avenue, Tianjin Airport Economic Area, Tianjin 300308, China
| | - Karen Methling
- Department
of Cellular Biochemistry and Metabolomics, Institute of Biochemistry, University of Greifswald, Felix-Hausdorff-Str. 4, 17487 Greifswald, Germany
| | - Yufei Ao
- Department
of Biotechnology and Enzyme Catalysis, Institute of Biochemistry, University of Greifswald, Felix-Hausdorff-Str. 4, 17487 Greifswald, Germany,University
of Chinese Academy of Sciences, 19A Yuquan Road, Beijing 100049, China
| | - Yannik Brack
- Department
of Biotechnology and Enzyme Catalysis, Institute of Biochemistry, University of Greifswald, Felix-Hausdorff-Str. 4, 17487 Greifswald, Germany
| | - Jan Mican
- Loschmidt
Laboratories, Department of Experimental Biology and RECETOX, Faculty
of Science, Masaryk University, Kamenice 5/C13, 625 00 Brno, Czech Republic,International
Clinical Research Center, St. Anne’s
University Hospital, Pekarska 53, 656 91 Brno, Czech Republic
| | - Christian G. Feiler
- Macromolecular
Crystallography, Helmholtz-Zentrum Berlin, Alber-Einstein-Straße 15, 12489 Berlin, Germany
| | - Manfred S. Weiss
- Macromolecular
Crystallography, Helmholtz-Zentrum Berlin, Alber-Einstein-Straße 15, 12489 Berlin, Germany
| | - David Bednar
- Loschmidt
Laboratories, Department of Experimental Biology and RECETOX, Faculty
of Science, Masaryk University, Kamenice 5/C13, 625 00 Brno, Czech Republic,International
Clinical Research Center, St. Anne’s
University Hospital, Pekarska 53, 656 91 Brno, Czech Republic
| | - Gottfried J. Palm
- Department
of Synthetic and Structural Biochemistry, Institute of Biochemistry, University of Greifswald, Felix-Hausdorff-Str. 4, 17487 Greifswald, Germany
| | - Michael Lalk
- Department
of Cellular Biochemistry and Metabolomics, Institute of Biochemistry, University of Greifswald, Felix-Hausdorff-Str. 4, 17487 Greifswald, Germany
| | - Michael Lammers
- Department
of Synthetic and Structural Biochemistry, Institute of Biochemistry, University of Greifswald, Felix-Hausdorff-Str. 4, 17487 Greifswald, Germany
| | - Jiri Damborsky
- Loschmidt
Laboratories, Department of Experimental Biology and RECETOX, Faculty
of Science, Masaryk University, Kamenice 5/C13, 625 00 Brno, Czech Republic,International
Clinical Research Center, St. Anne’s
University Hospital, Pekarska 53, 656 91 Brno, Czech Republic
| | - Gert Weber
- Macromolecular
Crystallography, Helmholtz-Zentrum Berlin, Alber-Einstein-Straße 15, 12489 Berlin, Germany
| | - Weidong Liu
- Tianjin
Institute of Industrial Biotechnology, Chinese
Academy of Sciences, 32 West 7th Avenue, Tianjin Airport Economic Area, Tianjin 300308, China,National
Technology Innovation Center of Synthetic Biology, 32 West 7th Avenue, Tianjin Airport Economic Area, Tianjin 300308, China,University
of Chinese Academy of Sciences, 19A Yuquan Road, Beijing 100049, China,
| | - Uwe T. Bornscheuer
- Department
of Biotechnology and Enzyme Catalysis, Institute of Biochemistry, University of Greifswald, Felix-Hausdorff-Str. 4, 17487 Greifswald, Germany,
| | - Ren Wei
- Department
of Biotechnology and Enzyme Catalysis, Institute of Biochemistry, University of Greifswald, Felix-Hausdorff-Str. 4, 17487 Greifswald, Germany,
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11
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Basak N, Meena SS. Microbial biodegradation of plastics: Challenges, opportunities, and a critical perspective. FRONTIERS OF ENVIRONMENTAL SCIENCE & ENGINEERING 2022; 16:161. [PMID: 35874797 PMCID: PMC9295099 DOI: 10.1007/s11783-022-1596-6] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/15/2022] [Revised: 06/18/2022] [Accepted: 06/20/2022] [Indexed: 05/19/2023]
Abstract
The abundance of synthetic polymers has increased due to their uncontrolled utilization and disposal in the environment. The recalcitrant nature of plastics leads to accumulation and saturation in the environment, which is a matter of great concern. An exponential rise has been reported in plastic pollution during the corona pandemic because of PPE kits, gloves, and face masks made up of single-use plastics. The physicochemical methods have been employed to degrade synthetic polymers, but these methods have limited efficiency and cause the release of hazardous metabolites or by-products in the environment. Microbial species, isolated from landfills and dumpsites, have utilized plastics as the sole source of carbon, energy, and biomass production. The involvement of microbial strains in plastic degradation is evident as a substantial amount of mineralization has been observed. However, the complete removal of plastic could not be achieved, but it is still effective compared to the preexisting traditional methods. Therefore, microbial species and the enzymes involved in plastic waste degradation could be utilized as eco-friendly alternatives. Thus, microbial biodegradation approaches have a profound scope to cope with the plastic waste problem in a cost-effective and environmental-friendly manner. Further, microbial degradation can be optimized and combined with physicochemical methods to achieve substantial results. This review summarizes the different microbial species, their genes, biochemical pathways, and enzymes involved in plastic biodegradation.
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Affiliation(s)
- Nitai Basak
- Department of Biotechnology, Dr. B. R. Ambedkar National Institute of Technology Jalandhar, Punjab, 144027 India
| | - Sumer Singh Meena
- Department of Biotechnology, Dr. B. R. Ambedkar National Institute of Technology Jalandhar, Punjab, 144027 India
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12
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Rodríguez-Fonseca MF, Sánchez-Suárez J, Valero MF, Ruiz-Balaguera S, Díaz LE. Streptomyces as Potential Synthetic Polymer Degraders: A Systematic Review. Bioengineering (Basel) 2021; 8:bioengineering8110154. [PMID: 34821720 PMCID: PMC8614672 DOI: 10.3390/bioengineering8110154] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2021] [Revised: 10/17/2021] [Accepted: 10/20/2021] [Indexed: 11/16/2022] Open
Abstract
The inherent resistance of synthetic plastics to degradation has led to an increasing challenge of waste accumulation problem and created a pollution issue that can only be addressed with novel complementary methods such as biodegradation. Since biocontrol is a promising eco-friendly option to address this challenge, the identification of suitable biological agents is a crucial requirement. Among the existing options, organisms of the Streptomyces genus have been reported to biodegrade several complex polymeric macromolecules such as chitin, lignin, and cellulose. Therefore, this systematic review aimed to evaluate the potential of Streptomyces strains for the biodegradation of synthetic plastics. The results showed that although Streptomyces strains are widely distributed in different ecosystems in nature, few studies have explored their capacity as degraders of synthetic polymers. Moreover, most of the research in this field has focused on Streptomyces strains with promising biotransforming potential against polyethylene-like polymers. Our findings suggest that this field of study is still in the early stages of development. Moreover, considering the diverse ecological niches associated with Streptomyces, these actinobacteria could serve as complementary agents for plastic waste management and thereby enhance carbon cycle dynamics.
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Affiliation(s)
- Maria Fernanda Rodríguez-Fonseca
- Master in Process Design and Management, School of Engineering, Universidad de La Sabana, Chía 250001, Colombia;
- Bioprospecting Research Group, School of Engineering, Universidad de La Sabana, Chía 250001, Colombia;
| | - Jeysson Sánchez-Suárez
- Bioprospecting Research Group, School of Engineering, Universidad de La Sabana, Chía 250001, Colombia;
| | - Manuel Fernando Valero
- Energy, Materials and Environment Group, School of Engineering, Universidad de La Sabana, Chía 250001, Colombia;
| | - Sonia Ruiz-Balaguera
- Conservation, Bioprospecting and Sustainable Development Group, Environmental Engineering Program, Universidad Nacional Abierta y a Distancia (UNAD), Bogotá 110911, Colombia;
| | - Luis Eduardo Díaz
- Bioprospecting Research Group, School of Engineering, Universidad de La Sabana, Chía 250001, Colombia;
- Correspondence: ; Tel.: +57-861-5555 (ext. 25208)
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13
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Hu L, Xia M, Gao X, Huo YX, Yang Y. Cellulosimicrobium composti sp. nov., a thermophilic bacterium isolated from compost. Int J Syst Evol Microbiol 2021; 71. [PMID: 34283014 DOI: 10.1099/ijsem.0.004905] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
A Gram-stain-positive, yellow-pigmented, non-motile actinobacterial strain, designated as BIT-GX5T, was isolated from a sesame husks compost collected in Beijing, PR China. This bacterium was found to be able to grow in the temperature range from 16 to 50 °C and had an optimal growth temperature at 45 °C. Its taxonomic position was analysed using a polyphasic approach. The 16S rRNA gene sequence (1482 bp) of strain BIT-GX5T was most similar to Cellulosimicrobium funkei ATCC BAA-886T (99.45%), Cellulosimicrobium cellulans LMG 16121T (99.17%) and Cellulosimicrobium marinum RS-7-4T (98.75%). The results of phylogenetic analyses, based on the 16S rRNA gene, concatenated sequences of five housekeeping genes (gyrB, rpoB, recA, atpD and trpB) and genome sequences, placed strain BIT-GX5T in a separate lineage among the genus Cellulosimicrobium within the family Promicromonosporaceae. The major polar lipids of strain BIT-GX5T were diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, aminophospholipid and aminolipid. The major isoprenoid quinone was MK-9(H4), while the cell-wall sugars were galactose, rhamnose, glucose and mannose. The peptidoglycan type was A4α l-Lys-d-Ser-d-Asp. The major fatty acids were anteiso-C15:0 and iso-C15: 0, which were similar to other members in the genus Cellulosimicrobium. Results of in silico DNA-DNA hybridization and average nucleotide identity calculations plus physiological and biochemical tests exhibited the genotypic and phenotypic differentiation of strain BIT-GX5T from the other members of the genus Cellulosimicrobium. Therefore, strain BIT-GX5T is considered to represent a novel species within the genus Cellulosimicrobium, for which the name Cellulosimicrobium composti sp. nov. is proposed. The type strain is BIT-GX5T (= CGMCC 1.17687T = KCTC 49391T).
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Affiliation(s)
- Lin Hu
- Key Laboratory of Molecular Medicine and Biotherapy, School of Life Science, Beijing Institute of Technology, Beijing 100081, PR China
| | - Mengli Xia
- Key Laboratory of Molecular Medicine and Biotherapy, School of Life Science, Beijing Institute of Technology, Beijing 100081, PR China
| | - Xi Gao
- Key Laboratory of Molecular Medicine and Biotherapy, School of Life Science, Beijing Institute of Technology, Beijing 100081, PR China
| | - Yi-Xin Huo
- Key Laboratory of Molecular Medicine and Biotherapy, School of Life Science, Beijing Institute of Technology, Beijing 100081, PR China
| | - Yu Yang
- Key Laboratory of Molecular Medicine and Biotherapy, School of Life Science, Beijing Institute of Technology, Beijing 100081, PR China.,Department of Biology, School of Life Science, Beijing Institute of Technology, Beijing 100081, PR China
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14
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Faizan Muneer, Nadeem H, Arif A, Zaheer W. Bioplastics from Biopolymers: An Eco-Friendly and Sustainable Solution of Plastic Pollution. POLYMER SCIENCE SERIES C 2021. [DOI: 10.1134/s1811238221010057] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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15
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Assessment of polyethylene degradation by biosurfactant producing ligninolytic bacterium. Biodegradation 2021; 32:531-549. [PMID: 34031794 DOI: 10.1007/s10532-021-09949-8] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2020] [Accepted: 05/15/2021] [Indexed: 10/21/2022]
Abstract
Accumulation of plastic waste has become an environmental threat and a global problem. In this research, polyethylene degrading ligninolytic bacteria were isolated from plastic waste polluted soil. Two bacterial isolates, namely PE2 and PE3 have been obtained from the soil samples. Polyethylene degrading ability of the isolates has been assessed individually in a synthetic media containing polyethylene as a carbon source. The results indicated that maximum weight reduction of polyethylene (6.68%) was found in PE3 inoculated media after thirty days of incubation. Fourier Transform Infrared Spectroscopic results showed the appearance of carbonyl peaks. 16S rRNA gene sequencing studies revealed that the potential isolate PE3 belongs to the genus Bacillus and it was named Bacillus sp. strain PE3. From the scanning electron microscopic results, it is inferred that Bacillus sp. strain PE3 could colonize on the polyethylene surface and form a biofilm. Besides, the viable Bacillus sp. strain PE3 on polyethylene surface was confirmed by fluorescence microscopic analysis. Alkanes and fatty acids were identified in the degraded products by gas chromatography-mass spectrometer analysis. From the results of native polyacrylamide gel electrophoresis, the activities of laccase and lignin peroxidase were noticed. Furthermore, extracellular production of biosurfactant has been observed in the Bacillus sp. strain PE3 inoculated mineral salt media and synthetic media with glucose and polyethylene as the carbon source respectively. The characterization studies of crude biosurfactant have confirmed that lipopeptide nature biosurfactant. The present study demonstrates that the ligninolytic enzymes laccase, lignin peroxidase, and lipopeptide type biosurfactant are produced by Bacillus sp. strain PE3 in the media with polyethylene as a carbon source.
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16
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Urbanek AK, Strzelecki MC, Mirończuk AM. The potential of cold-adapted microorganisms for biodegradation of bioplastics. WASTE MANAGEMENT (NEW YORK, N.Y.) 2021; 119:72-81. [PMID: 33045489 DOI: 10.1016/j.wasman.2020.09.031] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/07/2020] [Revised: 09/17/2020] [Accepted: 09/19/2020] [Indexed: 06/11/2023]
Abstract
Due to the extensive use of plastics, their quantity in the environment is constantly increasing, which creates a global problem. In the present study, we sought to isolate, test and identify Antarctic microorganisms which possess the ability to biodegrade bioplastics such as poly(ε-caprolactone) (PCL), poly(butylene succinate) (PBS) and poly(butylene succinate-co-butylene adipate) (PBSA) at low temperatures. 161 bacterial and 38 fungal isolates were isolated from 22 Antarctic soil samples. Among them, 92.16% of bacterial and 77.27% of fungal isolates formed a clear zone on emulsified PBSA, 98.04% and 81.82% on PBS and 100% and 77.27% on PCL as an additive to minimal medium at 20 °C. Based on the 16S and 18S rRNA sequences, bacterial strains were identified as species belonging to Pseudomonas and Bacillus and fungal strains as species belonging to Geomyces, Sclerotinia, Fusarium and Mortierella, while the yeast strain was identified as Hansenula anomala. In the biodegradation process conducted under laboratory conditions at 14, 20 and 28 °C, Sclerotinia sp. B11IV and Fusarium sp. B3'M strains showed the highest biodegradation activity at 20 °C (49.68% for PBSA and 33.7% for PCL, 45.99% for PBSA and 49.65% for PCL, respectively). The highest biodegradation rate for Geomyces sp. B10I was noted at 14 °C (25.67% for PBSA and 5.71% for PCL), which suggested a preference for lower temperatures (at 20 °C the biodegradation rate was only 11.34% for PBSA, and 4.46% for PCL). These data showed that microorganisms isolated from Antarctic regions are good candidates for effective plastic degradation at low temperatures.
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Affiliation(s)
- Aneta K Urbanek
- Department of Biotechnology and Food Microbiology, Wroclaw University of Environmental and Life Sciences, Chełmońskiego 37, 51-630 Wrocław, Poland
| | - Mateusz C Strzelecki
- Institute of Geography and Regional Development, University of Wroclaw, pl. Uniwersytecki 1, 50-137 Wrocław, Poland
| | - Aleksandra M Mirończuk
- Department of Biotechnology and Food Microbiology, Wroclaw University of Environmental and Life Sciences, Chełmońskiego 37, 51-630 Wrocław, Poland.
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17
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Biodegradable polymers: a cure for the planet, but a long way to go. JOURNAL OF POLYMER RESEARCH 2020. [DOI: 10.1007/s10965-020-2004-1] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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18
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Butbunchu N, Pathom-Aree W. Actinobacteria as Promising Candidate for Polylactic Acid Type Bioplastic Degradation. Front Microbiol 2019; 10:2834. [PMID: 31921021 PMCID: PMC6930877 DOI: 10.3389/fmicb.2019.02834] [Citation(s) in RCA: 28] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2019] [Accepted: 11/22/2019] [Indexed: 11/15/2022] Open
Abstract
Polylactic acid (PLA) is one of the most commercially available and exploited bioplastics worldwide. It is an important renewable polymer for the replacement of petroleum-based plastic materials. They are both biodegradable and bio-based plastic. Microbial degrading activity is a desirable method for environmental safety and economic value for bioplastic waste managements. Members of the phylum actinobacteria are found to play an important role in PLA degradation. Most of the PLA degrading actinobacteria belong to the family Pseudonocardiaceae. Other taxa include members of the family Micromonosporaceae, Streptomycetaceae, Streptosporangiaceae, and Thermomonosporaceae. This mini-review aims to provide an overview on PLA degrading actinobacteria including their diversity and taxonomy, isolation and screening procedures and PLA degrading enzyme production from 1997 to 2019. Consideration is also given to where to sampling and how we might use these beneficial actinobacteria for PLA waste management.
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Affiliation(s)
- Natthicha Butbunchu
- Master of Science Program in Applied Microbiology (International Program), Faculty of Science, Chiang Mai University, Chiang Mai, Thailand.,Graduate School, Chiang Mai University, Chiang Mai, Thailand
| | - Wasu Pathom-Aree
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai, Thailand.,Center of Excellence in Microbial Diversity and Sustainable Utilization, Faculty of Science, Chiang Mai University, Chiang Mai, Thailand
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19
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Muthukrishnan T, Al Khaburi M, Abed RMM. Fouling Microbial Communities on Plastics Compared with Wood and Steel: Are They Substrate- or Location-Specific? MICROBIAL ECOLOGY 2019; 78:361-374. [PMID: 30535914 DOI: 10.1007/s00248-018-1303-0] [Citation(s) in RCA: 38] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/22/2018] [Accepted: 11/27/2018] [Indexed: 05/20/2023]
Abstract
Although marine biofouling has been widely studied on different substrates, information on biofouling on plastics in the Arabian Gulf is limited. Substrate- and location-specific effects were investigated by comparing the microbial communities developed on polyethylene terephthalate (PET) and polyethylene (PE) with those on steel and wood, at two locations in the Sea of Oman. Total biomass was lower on PET and PE than on steel and wood. PET had the highest bacterial abundance at both locations, whereas chlorophyll a concentrations did not vary between substrates. MiSeq 16S ribosomal RNA sequencing revealed comparable operational taxonomic unit (OTU) richness on all substrates at one location but lower numbers on PET and PE at the other location. Non-metric multidimensional scaling (NMDS) showed distinct clusters of the bacterial communities based on substrate (analysis of similarity (ANOSIM), R = 0.45-0.97, p < 0.03) and location (ANOSIM, R = 0.56, p < 0.0001). The bacterial genera Microcystis and Hydrogenophaga and the diatoms Licmophora and Mastogloia were specifically detected on plastics. Desulfovibrio and Pseudomonas spp. exhibited their highest abundance on steel and Corynebacterium spp. on wood. Scanning electron microscopy (SEM) revealed fissure formation on PET and PE, indicating physical degradation. The presence of free radicals on PET and carbonyl bonds (C=O) on PE, as revealed by Fourier transform infrared (FTIR) spectroscopy, indicated abiotic degradation while hydroxyl groups and spectral peaks for proteins and polysaccharides on PE indicated biotic degradation. We conclude that fouling microbial communities are not only substrate-specific but also location-specific and microbes developing on plastics could potentially contribute to their degradation in the marine environment.
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Affiliation(s)
- Thirumahal Muthukrishnan
- Biology Department, College of Science, Sultan Qaboos University, P. O. Box 36, PC, 123, Al Khoud, Sultanate of Oman
| | - Maryam Al Khaburi
- Biology Department, College of Science, Sultan Qaboos University, P. O. Box 36, PC, 123, Al Khoud, Sultanate of Oman
| | - Raeid M M Abed
- Biology Department, College of Science, Sultan Qaboos University, P. O. Box 36, PC, 123, Al Khoud, Sultanate of Oman.
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20
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Shi K, Su T, Wang Z. Comparison of poly(butylene succinate) biodegradation by Fusarium solani cutinase and Candida antarctica lipase. Polym Degrad Stab 2019. [DOI: 10.1016/j.polymdegradstab.2019.04.005] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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21
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Butbunchu N, Pathom-Aree W. Actinobacteria as Promising Candidate for Polylactic Acid Type Bioplastic Degradation. Front Microbiol 2019. [PMID: 31921021 DOI: 10.3389/fmicb.2019.02834.pmid:31921021;pmcid:pmc6930877] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/28/2023] Open
Abstract
Polylactic acid (PLA) is one of the most commercially available and exploited bioplastics worldwide. It is an important renewable polymer for the replacement of petroleum-based plastic materials. They are both biodegradable and bio-based plastic. Microbial degrading activity is a desirable method for environmental safety and economic value for bioplastic waste managements. Members of the phylum actinobacteria are found to play an important role in PLA degradation. Most of the PLA degrading actinobacteria belong to the family Pseudonocardiaceae. Other taxa include members of the family Micromonosporaceae, Streptomycetaceae, Streptosporangiaceae, and Thermomonosporaceae. This mini-review aims to provide an overview on PLA degrading actinobacteria including their diversity and taxonomy, isolation and screening procedures and PLA degrading enzyme production from 1997 to 2019. Consideration is also given to where to sampling and how we might use these beneficial actinobacteria for PLA waste management.
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Affiliation(s)
- Natthicha Butbunchu
- Master of Science Program in Applied Microbiology (International Program), Faculty of Science, Chiang Mai University, Chiang Mai, Thailand
- Graduate School, Chiang Mai University, Chiang Mai, Thailand
| | - Wasu Pathom-Aree
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai, Thailand
- Center of Excellence in Microbial Diversity and Sustainable Utilization, Faculty of Science, Chiang Mai University, Chiang Mai, Thailand
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