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For: Gobbel GT, Garvin J, Reeves R, Cronin RM, Heavirland J, Williams J, Weaver A, Jayaramaraja S, Giuse D, Speroff T, Brown SH, Xu H, Matheny ME. Assisted annotation of medical free text using RapTAT. J Am Med Inform Assoc 2014;21:833-41. [PMID: 24431336 DOI: 10.1136/amiajnl-2013-002255] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]  Open
Number Cited by Other Article(s)
1
Liu J, Wong ZSY. Utilizing active learning strategies in machine-assisted annotation for clinical named entity recognition: a comprehensive analysis considering annotation costs and target effectiveness. J Am Med Inform Assoc 2024;31:2632-2640. [PMID: 39081233 PMCID: PMC11491619 DOI: 10.1093/jamia/ocae197] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2024] [Revised: 07/09/2024] [Accepted: 07/15/2024] [Indexed: 10/22/2024]  Open
2
Van den Eynde J, Lachmann M, Laugwitz KL, Manlhiot C, Kutty S. Successfully Implemented Artificial Intelligence and Machine Learning Applications In Cardiology: State-of-the-Art Review. Trends Cardiovasc Med 2022:S1050-1738(22)00012-3. [DOI: 10.1016/j.tcm.2022.01.010] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/25/2021] [Revised: 01/11/2022] [Accepted: 01/23/2022] [Indexed: 01/14/2023]
3
Manlhiot C, van den Eynde J, Kutty S, Ross HJ. A Primer on the Present State and Future Prospects for Machine Learning and Artificial Intelligence Applications in Cardiology. Can J Cardiol 2021;38:169-184. [PMID: 34838700 DOI: 10.1016/j.cjca.2021.11.009] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2021] [Revised: 11/03/2021] [Accepted: 11/13/2021] [Indexed: 12/14/2022]  Open
4
Jonnagaddala J, Chen A, Batongbacal S, Nekkantti C. The OpenDeID corpus for patient de-identification. Sci Rep 2021;11:19973. [PMID: 34620985 PMCID: PMC8497517 DOI: 10.1038/s41598-021-99554-9] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2021] [Accepted: 09/28/2021] [Indexed: 11/18/2022]  Open
5
Zhang H, Hu D, Duan H, Li S, Wu N, Lu X. A novel deep learning approach to extract Chinese clinical entities for lung cancer screening and staging. BMC Med Inform Decis Mak 2021;21:214. [PMID: 34330277 PMCID: PMC8323233 DOI: 10.1186/s12911-021-01575-x] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2021] [Accepted: 07/07/2021] [Indexed: 11/10/2022]  Open
6
Dobbie S, Strafford H, Pickrell WO, Fonferko-Shadrach B, Jones C, Akbari A, Thompson S, Lacey A. Markup: A Web-Based Annotation Tool Powered by Active Learning. Front Digit Health 2021;3:598916. [PMID: 34713086 PMCID: PMC8521860 DOI: 10.3389/fdgth.2021.598916] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2020] [Accepted: 06/16/2021] [Indexed: 11/13/2022]  Open
7
Li J, Zhou Y, Jiang X, Natarajan K, Pakhomov SV, Liu H, Xu H. Are synthetic clinical notes useful for real natural language processing tasks: A case study on clinical entity recognition. J Am Med Inform Assoc 2021;28:2193-2201. [PMID: 34272955 DOI: 10.1093/jamia/ocab112] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2020] [Revised: 05/09/2021] [Accepted: 06/07/2021] [Indexed: 11/13/2022]  Open
8
Newman-Griffis D, Lehman JF, Rosé C, Hochheiser H. Translational NLP: A New Paradigm and General Principles for Natural Language Processing Research. PROCEEDINGS OF THE CONFERENCE. ASSOCIATION FOR COMPUTATIONAL LINGUISTICS. NORTH AMERICAN CHAPTER. MEETING 2021;2021:4125-4138. [PMID: 34179899 PMCID: PMC8223521] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
9
Geva A, Stedman JP, Manzi SF, Lin C, Savova GK, Avillach P, Mandl KD. Adverse drug event presentation and tracking (ADEPT): semiautomated, high throughput pharmacovigilance using real-world data. JAMIA Open 2020;3:413-421. [PMID: 33215076 PMCID: PMC7660953 DOI: 10.1093/jamiaopen/ooaa031] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2020] [Revised: 06/23/2020] [Accepted: 06/27/2020] [Indexed: 11/24/2022]  Open
10
Trivedi G, Dadashzadeh ER, Handzel RM, Chapman WW, Visweswaran S, Hochheiser H. Interactive NLP in Clinical Care: Identifying Incidental Findings in Radiology Reports. Appl Clin Inform 2019;10:655-669. [PMID: 31486057 DOI: 10.1055/s-0039-1695791] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]  Open
11
Wagholikar KB, Fischer CM, Goodson A, Herrick CD, Rees M, Toscano E, MacRae CA, Scirica BM, Desai AS, Murphy SN. Extraction of Ejection Fraction from Echocardiography Notes for Constructing a Cohort of Patients having Heart Failure with reduced Ejection Fraction (HFrEF). J Med Syst 2018;42:209. [PMID: 30255347 PMCID: PMC6153777 DOI: 10.1007/s10916-018-1066-7] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2018] [Accepted: 09/09/2018] [Indexed: 12/19/2022]
12
Tapi Nzali MD, Aze J, Bringay S, Lavergne C, Mollevi C, Optiz T. Reconciliation of patient/doctor vocabulary in a structured resource. Health Informatics J 2018;25:1219-1231. [PMID: 29332530 DOI: 10.1177/1460458217751014] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
13
Trivedi G, Pham P, Chapman WW, Hwa R, Wiebe J, Hochheiser H. NLPReViz: an interactive tool for natural language processing on clinical text. J Am Med Inform Assoc 2018;25:81-87. [PMID: 29016825 PMCID: PMC6381768 DOI: 10.1093/jamia/ocx070] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2017] [Revised: 05/09/2017] [Accepted: 06/21/2017] [Indexed: 11/14/2022]  Open
14
Kholghi M, De Vine L, Sitbon L, Zuccon G, Nguyen A. Clinical information extraction using small data: An active learning approach based on sequence representations and word embeddings. J Assoc Inf Sci Technol 2017. [DOI: 10.1002/asi.23936] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
15
Kholghi M, Sitbon L, Zuccon G, Nguyen A. Active learning reduces annotation time for clinical concept extraction. Int J Med Inform 2017;106:25-31. [DOI: 10.1016/j.ijmedinf.2017.08.001] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2017] [Revised: 07/31/2017] [Accepted: 08/02/2017] [Indexed: 10/19/2022]
16
Névéol A, Zweigenbaum P. Clinical Natural Language Processing in 2014: Foundational Methods Supporting Efficient Healthcare. Yearb Med Inform 2017;10:194-8. [PMID: 26293868 DOI: 10.15265/iy-2015-035] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]  Open
17
Zheng S, Lu JJ, Ghasemzadeh N, Hayek SS, Quyyumi AA, Wang F. Effective Information Extraction Framework for Heterogeneous Clinical Reports Using Online Machine Learning and Controlled Vocabularies. JMIR Med Inform 2017;5:e12. [PMID: 28487265 PMCID: PMC5442348 DOI: 10.2196/medinform.7235] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2016] [Revised: 03/16/2017] [Accepted: 03/20/2017] [Indexed: 01/15/2023]  Open
18
Dernoncourt F, Lee JY, Uzuner O, Szolovits P. De-identification of patient notes with recurrent neural networks. J Am Med Inform Assoc 2017;24:596-606. [PMID: 28040687 PMCID: PMC7787254 DOI: 10.1093/jamia/ocw156] [Citation(s) in RCA: 107] [Impact Index Per Article: 15.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2016] [Revised: 09/06/2016] [Accepted: 10/06/2016] [Indexed: 01/16/2023]  Open
19
Kim Y, Garvin JH, Goldstein MK, Hwang TS, Redd A, Bolton D, Heidenreich PA, Meystre SM. Extraction of left ventricular ejection fraction information from various types of clinical reports. J Biomed Inform 2017;67:42-48. [PMID: 28163196 DOI: 10.1016/j.jbi.2017.01.017] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2016] [Revised: 12/16/2016] [Accepted: 01/31/2017] [Indexed: 10/20/2022]
20
Hochheiser H, Ning Y, Hernandez A, Horn JR, Jacobson R, Boyce RD. Using Nonexperts for Annotating Pharmacokinetic Drug-Drug Interaction Mentions in Product Labeling: A Feasibility Study. JMIR Res Protoc 2016;5:e40. [PMID: 27066806 PMCID: PMC4844909 DOI: 10.2196/resprot.5028] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2015] [Revised: 11/25/2015] [Accepted: 12/19/2015] [Indexed: 11/27/2022]  Open
21
Han D, Wang S, Jiang C, Jiang X, Kim HE, Sun J, Ohno-Machado L. Trends in biomedical informatics: automated topic analysis of JAMIA articles. J Am Med Inform Assoc 2015;22:1153-63. [PMID: 26555018 PMCID: PMC5009912 DOI: 10.1093/jamia/ocv157] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2015] [Revised: 09/08/2015] [Accepted: 09/14/2015] [Indexed: 01/26/2023]  Open
22
Velupillai S, Mowery D, South BR, Kvist M, Dalianis H. Recent Advances in Clinical Natural Language Processing in Support of Semantic Analysis. Yearb Med Inform 2015;10:183-93. [PMID: 26293867 PMCID: PMC4587060 DOI: 10.15265/iy-2015-009] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]  Open
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