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Argiroff WA, Carrell AA, Klingeman DM, Dove NC, Muchero W, Veach AM, Wahl T, Lebreux SJ, Webb AB, Peyton K, Schadt CW, Cregger MA. Seasonality and longer-term development generate temporal dynamics in the Populus microbiome. mSystems 2024; 9:e0088623. [PMID: 38421171 PMCID: PMC10949431 DOI: 10.1128/msystems.00886-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2023] [Accepted: 02/08/2024] [Indexed: 03/02/2024] Open
Abstract
Temporal variation in community composition is central to our understanding of the assembly and functioning of microbial communities, yet the controls over temporal dynamics for microbiomes of long-lived plants, such as trees, remain unclear. Temporal variation in tree microbiomes could arise primarily from seasonal (i.e., intra-annual) fluctuations in community composition or from longer-term changes across years as host plants age. To test these alternatives, we experimentally isolated temporal variation in plant microbiome composition using a common garden and clonally propagated plants, and we used amplicon sequencing to characterize bacterial/archaeal and fungal communities in the leaf endosphere, root endosphere, and rhizosphere of two Populus spp. over four seasons across two consecutive years. Microbial community composition differed among seasons and years (which accounted for up to 21% of the variation in microbial community composition) and was correlated with seasonal dissimilarity in climatic conditions. However, microbial community dissimilarity was also positively correlated with time, reflecting longer-term compositional shifts as host trees aged. Together, our findings demonstrate that temporal patterns in tree microbiomes arise from both seasonal fluctuations and longer-term changes, which interact to generate unique seasonal patterns each year. In addition to shedding light on two important controls over the assembly of plant microbiomes, our results also suggest future studies of tree microbiomes should account for background temporal dynamics when testing the drivers of spatial patterns in microbial community composition and temporal responses of plant microbiomes to environmental change.IMPORTANCEMicrobiomes are integral to the health of host plants, but we have a limited understanding of the factors that control how the composition of plant microbiomes changes over time. Especially little is known about the microbiome of long-lived trees, relative to annual and non-woody plants. We tested how tree microbiomes changed between seasons and years in poplar (genus Populus), which are widespread and ecologically important tree species that also serve as important biofuel feedstocks. We found the composition of bacterial, archaeal, and fungal communities differed among seasons, but these seasonal differences depended on year. This dependence was driven by longer-term changes in microbial composition as host trees developed across consecutive years. Our findings suggest that temporal variation in tree microbiomes is driven by both seasonal fluctuations and longer-term (i.e., multiyear) development.
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Affiliation(s)
- William A. Argiroff
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA
| | - Alyssa A. Carrell
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA
| | - Dawn M. Klingeman
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA
| | - Nicholas C. Dove
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA
| | - Wellington Muchero
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA
| | - Allison M. Veach
- Department of Integrative Biology, The University of Texas, San Antonio, Texas, USA
| | - Toni Wahl
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA
| | - Steven J. Lebreux
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA
| | - Amber B. Webb
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA
| | - Kellie Peyton
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA
| | - Christopher W. Schadt
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA
- Department of Microbiology, University of Tennessee, Knoxville, Tennessee, USA
| | - Melissa A. Cregger
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA
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Xie Y, Thammavong HT, Berry LG, Huang CH, Park DS. Sex-dependent phenological responses to climate vary across species' ranges. Proc Natl Acad Sci U S A 2023; 120:e2306723120. [PMID: 37956437 PMCID: PMC10691327 DOI: 10.1073/pnas.2306723120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2023] [Accepted: 09/27/2023] [Indexed: 11/15/2023] Open
Abstract
Anthropogenic climate change has significantly altered the flowering times (i.e., phenology) of plants worldwide, affecting their reproduction, survival, and interactions. Recent studies utilizing herbarium specimens have uncovered significant intra- and inter-specific variation in flowering phenology and its response to changes in climate but have mostly been limited to animal-pollinated species. Thus, despite their economic and ecological importance, variation in phenological responses to climate remain largely unexplored among and within wind-pollinated dioecious species and across their sexes. Using both herbarium specimens and volunteer observations of cottonwood (Populus) species, we examined how phenological sensitivity to climate varies across species, their ranges, sexes, and phenophases. The timing of flowering varied significantly across and within species, as did their sensitivity to spring temperature. In particular, male flowering generally happened earlier in the season and was more sensitive to warming than female flowering. Further, the onset of flowering was more sensitive to changes in temperature than leaf out. Increased temporal gaps between male and female flowering time and between the first open flower date and leaf out date were predicted for the future under two climate change scenarios. These shifts will impact the efficacy of sexual reproduction and gene flow among species. Our study demonstrates significant inter- and intra-specific variation in phenology and its responses to environmental cues, across species' ranges, phenophases, and sex, in wind-pollinated species. These variations need to be considered to predict accurately the effects of climate change and assess their ecological and evolutionary consequences.
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Affiliation(s)
- Yingying Xie
- Department of Biological Sciences, Purdue University, West Lafayette, IN47907
- Purdue Center for Plant Biology, Purdue University, West Lafayette, IN47907
- Department of Biological Sciences, Northern Kentucky University, Highland Heights, KY41099
| | - Hanna T. Thammavong
- Department of Biological Sciences, Purdue University, West Lafayette, IN47907
| | - Lily G. Berry
- Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN47907
| | - Chingyan H. Huang
- Department of Biological Sciences, Purdue University, West Lafayette, IN47907
| | - Daniel S. Park
- Department of Biological Sciences, Purdue University, West Lafayette, IN47907
- Purdue Center for Plant Biology, Purdue University, West Lafayette, IN47907
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Li S, Devi B, Allam G, Bhullar A, Murmu J, Li E, Hepworth SR. Regulation of secondary growth by poplar BLADE-ON-PETIOLE genes in Arabidopsis. FRONTIERS IN PLANT SCIENCE 2023; 14:1244583. [PMID: 38034559 PMCID: PMC10682204 DOI: 10.3389/fpls.2023.1244583] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/22/2023] [Accepted: 10/17/2023] [Indexed: 12/02/2023]
Abstract
BLADE-ON-PETIOLE (BOP) genes are essential regulators of vegetative and reproductive development in land plants. First characterized in Arabidopsis thaliana (Arabidopsis), members of this clade function as transcriptional co-activators by recruiting TGACG-motif binding (TGA) basic leucine zipper (bZIP) transcription factors. Highly expressed at organ boundaries, these genes are also expressed in vascular tissue and contribute to lignin biosynthesis during secondary growth. How these genes function in trees, which undergo extensive secondary growth to produce wood, remains unclear. Here, we investigate the functional conservation of BOP orthologs in Populus trichocarpa (poplar), a widely-used model for tree development. Within the poplar genome, we identified two BOP-like genes, PtrBPL1 and PtrBPL2, with abundant transcripts in stems. To assess their functions, we used heterologous assays in Arabidopsis plants. The promoters of PtrBPL1 and PtrBPL2, fused with a β-glucuronidase (GUS) reporter gene showed activity at organ boundaries and in secondary xylem and phloem. When introduced into Arabidopsis plants, PtrBPL1 and PtrBPL2 complemented leaf and flower patterning defects in bop1 bop2 mutants. Notably, Arabidopsis plants overexpressing PtrBPL1 and PtrBPL2 showed defects in stem elongation and the lignification of secondary tissues in the hypocotyl and stem. Finally, PtrBPL1 and PtrBPL2 formed complexes with TGA bZIP proteins in yeast. Collectively, our findings suggest that PtrBPL1 and PtrBPL2 are orthologs of Arabidopsis BOP1 and BOP2, potentially contributing to secondary growth regulation in poplar trees. This work provides a foundation for functional studies in trees.
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Bayliss SLJ, Mueller LO, Ware IM, Schweitzer JA, Bailey JK. Stacked distribution models predict climate-driven loss of variation in leaf phenology at continental scales. Commun Biol 2022; 5:1213. [PMID: 36357488 PMCID: PMC9649771 DOI: 10.1038/s42003-022-04131-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2022] [Accepted: 10/18/2022] [Indexed: 11/12/2022] Open
Abstract
Climate change is having profound effects on species distributions and is likely altering the distribution of genetic variation across landscapes. Maintaining population genetic diversity is essential for the survival of species facing rapid environmental change, and variation loss will further ecological and evolutionary change. We used trait values of spring foliar leaf-out phenology of 400 genotypes from three geographically isolated populations of Populus angustifolia grown under common conditions, in concert with stacked species distribution modeling, to ask: (a) How will climate change alter phenological variation across the P. angustifolia species-range, and within populations; and (b) will the distribution of phenological variation among and within populations converge (become more similar) in future climatic conditions? Models predicted a net loss of phenological variation in future climate scenarios on 20-25% of the landscape across the species’ range, with the trailing edge population losing variation on as much as 47% of the landscape. Our models also predicted that population’s phenological trait distributions will become more similar over time. This stacked distribution model approach allows for the identification of areas expected to experience the greatest loss of genetically based functional trait variation and areas that may be priorities to conserve as future genetic climate refugia. Integrating stacked distribution models with genetically-based trait diversity of Populus angustifolia reveals how phenological variation can change differently across populations in response to climate change.
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Relationships between Sphaerulina musiva Infection and the Populus Microbiome and Metabolome. mSystems 2022; 7:e0012022. [PMID: 35862808 PMCID: PMC9426494 DOI: 10.1128/msystems.00120-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Pathogenic fungal infections in plants may, in some cases, lead to downstream systematic impacts on the plant metabolome and microbiome that may either alleviate or exacerbate the effects of the fungal pathogen. While Sphaerulina musiva is a well-characterized fungal pathogen which infects Populus tree species, an important wood fiber and biofuel feedstock, little is known about its systematic effects on the metabolome and microbiome of Populus. Here, we investigated the metabolome of Populus trichocarpa and Populus deltoides leaves and roots and the microbiome of the leaf and root endospheres, phylloplane, and rhizosphere to understand the systematic impacts of S. musiva abundance and infection on Populus species in a common garden field setting. We found that S. musiva is indeed present in both P. deltoides and P. trichocarpa, but S. musiva abundance was not statistically related to stem canker onset. We also found that the leaf and root metabolomes significantly differ between the two Populus species and that certain leaf metabolites, particularly the phenolic glycosides salirepin and salireposide, are diminished in canker-infected P. trichocarpa trees compared to their uninfected counterparts. Furthermore, we found significant associations between the metabolome, S. musiva abundance, and microbiome composition and α-diversity, particularly in P. trichocarpa leaves. Our results show that S. musiva colonizes both resistant and susceptible hosts and that the effects of S. musiva on susceptible trees are not confined to the site of canker infection. IMPORTANCE Poplar (Populus spp.) trees are ecologically and economically important trees throughout North America. However, many western North American poplar plantations are at risk due to the introduction of the nonnative fungal pathogen Sphaerulina musiva, which causes leaf spot and cankers, limiting their production. To better understand the interactions among the pathogen S. musiva, the poplar metabolome, and the poplar microbiome, we collected leaf, root, and rhizosphere samples from poplar trees consisting of 10 genotypes and two species with differential resistance to S. musiva in a common garden experiment. Here, we outline the nuanced relationships between the poplar metabolome, microbiome, and S. musiva, showing that S. musiva may affect poplar trees in tissues distal to the site of infection (i.e., stem). Our research contributes to improving the fundamental understanding of S. musiva and Populus sp. ecology and the utility of a holobiont approach in understanding plant disease.
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Climate-driven divergence in plant-microbiome interactions generates range-wide variation in bud break phenology. Commun Biol 2021; 4:748. [PMID: 34135464 PMCID: PMC8209103 DOI: 10.1038/s42003-021-02244-5] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2020] [Accepted: 05/12/2021] [Indexed: 02/05/2023] Open
Abstract
Soil microbiomes are rapidly becoming known as an important driver of plant phenotypic variation and may mediate plant responses to environmental factors. However, integrating spatial scales relevant to climate change with plant intraspecific genetic variation and soil microbial ecology is difficult, making studies of broad inference rare. Here we hypothesize and show: 1) the degree to which tree genotypes condition their soil microbiomes varies by population across the geographic distribution of a widespread riparian tree, Populus angustifolia; 2) geographic dissimilarity in soil microbiomes among populations is influenced by both abiotic and biotic environmental variation; and 3) soil microbiomes that vary in response to abiotic and biotic factors can change plant foliar phenology. We show soil microbiomes respond to intraspecific variation at the tree genotype and population level, and geographic variation in soil characteristics and climate. Using a fully reciprocal plant population by soil location feedback experiment, we identified a climate-based soil microbiome effect that advanced and delayed bud break phenology by approximately 10 days. These results demonstrate a landscape-level feedback between tree populations and associated soil microbial communities and suggest soil microbes may play important roles in mediating and buffering bud break phenology with climate warming, with whole ecosystem implications.
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7
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Assembly of the Populus Microbiome Is Temporally Dynamic and Determined by Selective and Stochastic Factors. mSphere 2021; 6:e0131620. [PMID: 34106767 PMCID: PMC8265678 DOI: 10.1128/msphere.01316-20] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023] Open
Abstract
Recent work shows that the plant microbiome, particularly the initial assembly of this microbiome, influences plant health, survival, and fitness. Here, we characterize the initial assembly of the Populus microbiome across ten genotypes belonging to two poplar species in a common garden using 16S rRNA gene and ITS2 region amplicon sequencing of the leaf endosphere, leaf surface, root endosphere, and rhizosphere. We sampled these microbiomes three times throughout the first growing season and found that the composition of the microbiome changed dramatically over time across all plant-associated habitats and host genotypes. For archaea and bacteria, these changes were dominated by strong homogenizing selection (accounting for 29 to 62% of pairwise comparisons). However, fungal assembly was generally characterized by multiple ecological assembly processes (i.e., a mix of weak selective and dispersal processes). Interestingly, genotype, while a significant moderator of microbiome composition, generally explained less variation than sample date across plant-associated habitats. We defined a set of core genera that accounted for, on average, 36% of the microbiome. The relative abundance of this core community was consistent over time. Additionally, using source tracking modeling, we determined that new microbial taxa colonize from both aboveground and belowground sources, and combined with our ecological assembly null models, we found that both selective and dispersal processes explained the differences between exo- (i.e., leaf surface and rhizosphere) and endospheric microbiomes. Taken together, our results suggest that the initial assembly of the Populus microbiome is time-, genotype-, and habitat-dependent and is moderated by both selective and stochastic factors. IMPORTANCE The initial assembly of the plant microbiome may establish the trajectory of forthcoming microbiome states, which could determine the overall future health of the plant. However, while much is known about the initial microbiome assembly of grasses and agricultural crops, less is known about the initial microbiome of long-lived trees, such as poplar (Populus spp.). Thus, a greater understanding of initial plant microbiome assembly in an ecologically and economically important plant such as Populus is highly desirable. Here, we show that the initial microbiome community composition and assembly in the first growing season of Populus is temporally dynamic and is determined by a combination of both selective and stochastic factors. Our findings could be used to prescribe ecologically informed microbial inoculations and better predict the composition of the Populus microbiome into the future and to better understand its influence on plant health.
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8
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Hu Y, Li C, Jiang L, Liang D, Zhao X. Growth performance and nitrogen allocation within leaves of two poplar clones after exponential and conventional nitrogen applications. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2020; 154:530-537. [PMID: 32912486 DOI: 10.1016/j.plaphy.2020.06.053] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/05/2020] [Revised: 06/04/2020] [Accepted: 06/30/2020] [Indexed: 06/11/2023]
Abstract
Populus species are fast growing with high N requirements; an optimum level of fertilization is necessary for high seedling quality and subsequent plantation productivity. In this study, the morphological and physiological responses of two poplar clones (XH and BL3) to exponential and conventional N dosages were investigated, with a specific focus on leaf traits, the photorespiratory N cycle, and the interconversion of amino acids within leaves. Results show that shoot height and leaf number exponentially increased with plant growth. Leaf area, chlorophyll concentration, and net photosynthetic rate significantly increased for both clones during N fertilization, with a significant difference only in leaf area of clone XH between exponential and conventional dosages. Leaf concentrations of free amino acids and soluble sugars were not different but soluble proteins and fatty acids were significantly different for clone XH between N dosages; the amino acids glutamate, alanine, and aspartic acid concentrations increased in exponentially fertilized seedlings compared to controls. Amino acids, including the composition concentration and activity of glutamic-oxalacetic and -pyruvic transaminase, and soluble sugars were significantly higher for clone BL3 in fertilized seedlings. Photorespiration (glycine and glycolate oxidase) and glutathione redox (oxidized glutathione) were affected by fertilization. The activities of key enzymes (glycolate oxidase, catalase, and γ-glutamate cysteine ligase) involved in photorespiration and glutathione metabolism were lower for clone XH with exponential fertilization. Phenylalanine catabolism was influenced by fertilization and the interaction, clone × fertilization, showing accumulation of phenylalanine and tyrosine but decreases in phenylalanine ammonialyase activity and flavonoid concentrations in leaves of fertilized seedlings. The results indicate that leaf area and the interconversion of amino acids through deamidation/transamination are key regulatory hubs in poplar acclimation to soil N availability.
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Affiliation(s)
- Yanbo Hu
- State Key Laboratory of Tree Genetics and Breeding, School of Forestry, Northeast Forestry University, Harbin, 150040, PR China; Forestry College, Beihua University, Jilin, 132013, PR China.
| | - Chunming Li
- Heilongjiang Academy of Forestry, Harbin, 150081, PR China
| | - Luping Jiang
- State Key Laboratory of Tree Genetics and Breeding, School of Forestry, Northeast Forestry University, Harbin, 150040, PR China
| | - Deyang Liang
- State Key Laboratory of Tree Genetics and Breeding, School of Forestry, Northeast Forestry University, Harbin, 150040, PR China
| | - Xiyang Zhao
- State Key Laboratory of Tree Genetics and Breeding, School of Forestry, Northeast Forestry University, Harbin, 150040, PR China.
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Ware IM, Van Nuland ME, Schweitzer JA, Yang Z, Schadt CW, Sidak-Loftis LC, Stone NE, Busch JD, Wagner DM, Bailey JK. Climate-driven reduction of genetic variation in plant phenology alters soil communities and nutrient pools. GLOBAL CHANGE BIOLOGY 2019; 25:1514-1528. [PMID: 30659721 DOI: 10.1111/gcb.14553] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/02/2018] [Accepted: 12/07/2018] [Indexed: 06/09/2023]
Abstract
We examined the hypothesis that climate-driven evolution of plant traits will influence associated soil microbiomes and ecosystem function across the landscape. Using a foundation tree species, Populus angustifolia, observational and common garden approaches, and a base population genetic collection that spans 17 river systems in the western United States, from AZ to MT, we show that (a) as mean annual temperature (MAT) increases, genetic and phenotypic variation for bud break phenology decline; (b) soil microbiomes, soil nitrogen (N), and soil carbon (C) vary in response to MAT and conditioning by trees; and (c) with losses of genetic variation due to warming, population-level regulation of community and ecosystem functions strengthen. These results demonstrate a relationship between the potential evolutionary response of populations and subsequent shifts in ecosystem function along a large temperature gradient.
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Affiliation(s)
- Ian M Ware
- Department of Ecology and Evolutionary Biology, University of Tennessee, Knoxville, Tennessee
| | | | - Jennifer A Schweitzer
- Department of Ecology and Evolutionary Biology, University of Tennessee, Knoxville, Tennessee
| | - Zamin Yang
- Bioscience Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee
| | - Christopher W Schadt
- Bioscience Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee
- Department of Microbiology, University of Tennessee, Knoxville, Tennessee
| | | | - Nathan E Stone
- Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona
| | - Joseph D Busch
- Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona
| | - David M Wagner
- Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona
| | - Joseph K Bailey
- Department of Ecology and Evolutionary Biology, University of Tennessee, Knoxville, Tennessee
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Zanewich KP, Pearce DW, Rood SB. Heterosis in poplar involves phenotypic stability: cottonwood hybrids outperform their parental species at suboptimal temperatures. TREE PHYSIOLOGY 2018; 38:789-800. [PMID: 29509939 DOI: 10.1093/treephys/tpy019] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/17/2017] [Accepted: 02/05/2018] [Indexed: 06/08/2023]
Abstract
Heterosis or hybrid vigor is common in hybrid poplars, and to investigate its occurrence and physiological basis we compared narrowleaf cottonwoods, Populus angustifolia James, prairie cottonwoods, Populus deltoides Bartr. ex Marsh, and their native intersectional hybrids, P. × acuminata Rydb., from Alberta, Canada. Clonal replicates from 10 separate trees from each taxon were raised in growth chambers at different temperatures (T). Growth was similarly vigorous across the taxa at 20 and 24 °C, and morphological and physiological traits of the hybrids were generally intermediate between the parental species, or similar to the larger parent, demonstrating additive inheritance or dominance, respectively. Growth declined at 18 and 15 °C particularly in the parental species, and consequently hybrid vigor was displayed for root and especially leaf growth. Stomatal distributions and chlorophyll indices were intermediate in the hybrids and unaffected by T. Foliar nitrogen (N), net assimilation (Asat), stomatal conductance (gs) and transpiration (E) per unit of leaf area were lower in the hybrids, but the hybrids generally had larger leaf areas. Water-use efficiencies (Asat/gs) were similar across the taxa and reduced with warming, while nitrogen-use efficiencies (Asat/N) increased. δ13C was correlated with leaf mass per area, which varied across the taxa. Photosynthesis (Asat) was correlated with chlorophyll content index, N and/or gs in P. deltoides and the hybrids, but not in P. angustifolia, indicating different physiological limitations. We conclude that heterosis in P. × acuminata results from the compound benefits from multiple dominant traits, and superior growth particularly at suboptimal conditions. This indicates phenotypic stability or environmental adaptability, whereby heterozygosity provides metabolic diversity that allows hybrids to thrive across a broader environmental range.
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Affiliation(s)
- Karen P Zanewich
- Department of Biological Sciences, University of Lethbridge, 4401 University Drive W., Lethbridge AB, Canada T1K 3M4
| | - David W Pearce
- Department of Biological Sciences, University of Lethbridge, 4401 University Drive W., Lethbridge AB, Canada T1K 3M4
| | - Stewart B Rood
- Department of Biological Sciences, University of Lethbridge, 4401 University Drive W., Lethbridge AB, Canada T1K 3M4
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Decker VHG, Bandau F, Gundale MJ, Cole CT, Albrectsen BR. Aspen phenylpropanoid genes' expression levels correlate with genets' tannin richness and vary both in responses to soil nitrogen and associations with phenolic profiles. TREE PHYSIOLOGY 2017; 37:270-279. [PMID: 27986954 DOI: 10.1093/treephys/tpw118] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/29/2016] [Accepted: 11/07/2016] [Indexed: 06/06/2023]
Abstract
Condensed tannin (CT) contents of European aspen (Populus tremula L.) vary among genotypes, and increases in nitrogen (N) availability generally reduce plants' tannin production in favor of growth, through poorly understood mechanisms. We hypothesized that intrinsic tannin production rates may co-vary with gene expression responses to soil N and resource allocation within the phenylpropanoid pathway (PPP). Thus, we examined correlations between soil N levels and both expression patterns of eight PPP genes (measured by quantitative-reverse transcription PCR) and foliar phenolic compounds (measured by liquid chromatography-mass spectrometry) in young aspen genets with intrinsically extreme CT levels. Monitored phenolics included salicinoids, lignins, flavones, flavonols, CT precursors and CTs. The PPP genes were consistently expressed more strongly in high-CT trees. Low N supplements reduced expression of genes throughout the PPP in all genets, while high N doses restored expression of genes at the beginning and end of the pathway. These PPP changes were not reflected in pools of tannin precursors, but varying correlations between gene expression and foliar phenolic pools were detected in young and mature leaves, suggesting that processes linking gene expression and the resulting phenolics vary spatially and temporally. Precursor fluxes suggested that CT-related metabolic rate or sink controls are linked to intrinsic carbon allocation strategies associated with N responses. Overall, we found more negative correlations (indicative of allocation trade-offs) between PPP gene expression and phenolic products following N additions in low-CT plants than in high-CT plants. The tannin-related expression dynamics suggest that, in addition to defense, relative tannin levels may also be indicative of intraspecific variations in the way aspen genets respond to soil fertility.
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Affiliation(s)
- Vicki H G Decker
- Department of Plant Physiology, Umeå Plant Science Centre, Umeå University, UmeåSE 90187, Sweden
| | - Franziska Bandau
- Department of Plant Physiology, Umeå Plant Science Centre, Umeå University, UmeåSE 90187, Sweden
| | - Michael J Gundale
- Department of Forest Ecology and Management, Swedish University of Agricultural Sciences, UmeåSE 90183, Sweden
| | - Christopher T Cole
- Division of Science and Mathematics, University of Minnesota, Morris, MN56267, USA
| | - Benedicte R Albrectsen
- Department of Plant Physiology, Umeå Plant Science Centre, Umeå University, UmeåSE 90187, Sweden
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Schreiber SG, Hacke UG, Chamberland S, Lowe CW, Kamelchuk D, Bräutigam K, Campbell MM, Thomas BR. Leaf size serves as a proxy for xylem vulnerability to cavitation in plantation trees. PLANT, CELL & ENVIRONMENT 2016; 39:272-81. [PMID: 26177991 DOI: 10.1111/pce.12611] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/15/2015] [Revised: 06/26/2015] [Accepted: 06/30/2015] [Indexed: 05/08/2023]
Abstract
Hybrid poplars are an important renewable forest resource known for their high productivity. At the same time, they are highly vulnerable to water stress. Identifying traits that can serve as indicators for growth performance remains an important task, particularly under field conditions. Understanding which trait combinations translate to improved productivity is key in order to satisfy the demand for poplar wood in an uncertain future climate. In this study, we compared hydraulic and leaf traits among five hybrid poplar clones at 10 plantations in central Alberta. We also assessed the variation of these traits between 2- to 3-year-old branches from the lower to mid-crown and current-year long shoots from the mid to upper crown. Our results showed that (1) hybrid poplars differed in key hydraulic parameters between branch type, (2) variation of hydraulic traits among clones was relatively large for some clones and less for others, and (3) strong relationships between measured hydraulic traits, such as vessel diameter, cavitation resistance, xylem-specific and leaf-specific conductivity and leaf area, were observed. Our results suggest that leaf size could serve as an additional screening tool when selecting for drought-tolerant genotypes in forest management and tree improvement programmes.
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Affiliation(s)
- Stefan G Schreiber
- Department of Renewable Resources, University of Alberta, 442 Earth Sciences Building, Edmonton, Alberta, Canada, T6G 2E3
| | - Uwe G Hacke
- Department of Renewable Resources, University of Alberta, 442 Earth Sciences Building, Edmonton, Alberta, Canada, T6G 2E3
| | - Sabrina Chamberland
- Department of Renewable Resources, University of Alberta, 442 Earth Sciences Building, Edmonton, Alberta, Canada, T6G 2E3
| | - Christopher W Lowe
- Department of Renewable Resources, University of Alberta, 442 Earth Sciences Building, Edmonton, Alberta, Canada, T6G 2E3
| | - David Kamelchuk
- Department of Renewable Resources, University of Alberta, 442 Earth Sciences Building, Edmonton, Alberta, Canada, T6G 2E3
| | - Katharina Bräutigam
- Department of Biological Sciences, University of Toronto Scarborough, 1265 Military Trail, Toronto, Ontario, Canada, M1C 1A4
| | - Malcolm M Campbell
- Department of Biological Sciences, University of Toronto Scarborough, 1265 Military Trail, Toronto, Ontario, Canada, M1C 1A4
- Centre for the Analysis of Genome Evolution and Function, University of Toronto, 25 Willcocks St., Toronto, Ontario, Canada, M5S 3B2
- Department of Molecular and Cellular Biology, University of Guelph, Summerlee Science Complex, Guelph, Ontario, Canada, N1G 2W1
| | - Barb R Thomas
- Department of Renewable Resources, University of Alberta, 442 Earth Sciences Building, Edmonton, Alberta, Canada, T6G 2E3
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Kaluthota S, Pearce DW, Evans LM, Letts MG, Whitham TG, Rood SB. Higher photosynthetic capacity from higher latitude: foliar characteristics and gas exchange of southern, central and northern populations of Populus angustifolia. TREE PHYSIOLOGY 2015; 35:936-48. [PMID: 26232786 DOI: 10.1093/treephys/tpv069] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/12/2015] [Accepted: 06/29/2015] [Indexed: 05/18/2023]
Abstract
Narrowleaf cottonwood (Populus angustifolia James) is an obligate riparian poplar that is a foundation species in river valleys along the Rocky Mountains, spanning 16° of latitude from southern Arizona, USA to southern Alberta, Canada. Its current distribution is fragmented, and genetic variation shows regional population structure consistent with the effects of geographic barriers and past climate. It is thus very well-suited for investigating ecophysiological adaptation associated with latitude. In other section Tacamahaca poplar species, genotypes from higher latitudes show evidence of short-season adaptation with foliar traits that contribute to higher photosynthetic capacity. We tested for similar adaptation in three populations of narrowleaf cottonwoods: from Arizona (south), Alberta (north) and Utah, near the centre of the latitudinal distribution. We propagated 20 genotypes from each population in a common garden in Alberta, and measured foliar and physiological traits after 3 years. Leaves of genotypes from the northern population had higher leaf mass per area (LMA), increased nitrogen (N) content and higher carotenoid and chlorophyll content, and these were associated with higher light-saturated net photosynthesis (Asat). In leaves of all populations the majority of stomata were abaxial, with the proportion of abaxial stomata highest in the southern population. Stomatal conductance (gs) and transpiration rates were higher in the northern population but water-use efficiency (Asat/gs) and leaf carbon isotope composition (δ(13)C) did not differ across the populations. These results (i) establish links between Asat and gs, N, chlorophyll and LMA among populations within this species, (ii) are consistent with the discrimination of populations from prior investigation of genetic variation and (iii) support the concept of latitudinal adaptation, whereby deciduous trees from higher latitudes display higher photosynthetic capacity, possibly compensating for a shorter and cooler growth season and reduced insolation.
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Affiliation(s)
- Sobadini Kaluthota
- Environmental Sciences, University of Lethbridge, Lethbridge, AB, Canada T1K 3M4
| | - David W Pearce
- Environmental Sciences, University of Lethbridge, Lethbridge, AB, Canada T1K 3M4
| | - Luke M Evans
- Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ 86011, USA Department of Biology, West Virginia University, Morgantown, WV 26506, USA
| | - Matthew G Letts
- Environmental Sciences, University of Lethbridge, Lethbridge, AB, Canada T1K 3M4
| | - Thomas G Whitham
- Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ 86011, USA
| | - Stewart B Rood
- Environmental Sciences, University of Lethbridge, Lethbridge, AB, Canada T1K 3M4
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14
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Geographical barriers and climate influence demographic history in narrowleaf cottonwoods. Heredity (Edinb) 2015; 114:387-96. [PMID: 25585921 DOI: 10.1038/hdy.2014.115] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2014] [Revised: 10/30/2014] [Accepted: 11/04/2014] [Indexed: 12/29/2022] Open
Abstract
Studies of genetic variation can clarify the role of geography and spatio-temporal variation of climate in shaping demography, particularly in temperate zone tree species with large latitudinal ranges. Here, we examined genetic variation in narrowleaf cottonwood, Populus angustifolia, a dominant riparian tree. Using multi-locus surveys of polymorphism in 363 individuals across the species' 1800 km latitudinal range, we found that, first, P. angustifolia has stronger neutral genetic structure than many forest trees (simple sequence repeat (SSR) FST=0.21), with major genetic groups corresponding to large apparent geographical barriers to gene flow. Second, using SSRs and putatively neutral sequenced loci, coalescent simulations indicated that populations diverged before the last glacial maximum (LGM), suggesting the presence of population structure before the LGM. Third, the LGM and subsequent warming appear to have had different influences on each of these distinct populations, with effective population size reduction in the southern extent of the range but major expansion in the north. These results are consistent with the hypothesis that climate and geographic barriers have jointly affected the demographic history of P. angustifolia, and point the importance of both factors as being instrumental in shaping genetic variation and structure in widespread forest trees.
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15
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Yan QL, Zhu JJ, Hu ZB, Sun OJ. Environmental impacts of the shelter forests in Horqin Sandy land, northeast China. JOURNAL OF ENVIRONMENTAL QUALITY 2011; 40:815-824. [PMID: 21546667 DOI: 10.2134/jeq2010.0137] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
Assessing environmental effects of shelter forests is primarily necessary for realizing their greatest protective benefits. The Three-North Shelter Forest Program (TNSFP), the largest ecological afforestation program in the world, has been operated for three decades in China but so far lacks comprehensive assessment of its environmental impacts. Horqin Sandy Land (HSL) in Northeast China is one of the key areas in the TNSFP implementation. To identify the principal contributors to environmental changes in HSL, we evaluated impacts of variations in landscape features, shelter forest areas, climatic factors, and social factors on changes in sandy land areas from 1978 to 2007, by using Gray Relational Analysis. Our analysis showed that during the period 1978 to 2007, the sandy land area decreased by 3.9% in low aeolian dunes, 14.5% in low mountains and hills, and 98.9% in high elevation alluvial flats of HSL. Factors with Gray Correlation Degrees >0.9 were identified as the patch shape index (PSI) and the landscape isolation index (LII) of grasses in low aeolian dunes, PSI of grasses in mountains and hills, and area of broadleaved forests and LII of shrubs in alluvial flats. It is concluded that establishment of the shelter forests has played a significant role in controlling the expansion of sandy land in HSL. To sustain the long-term environmental benefits of the shelter forests in the remaining period for TNSFP construction, suitable tree species should be selected and planted at appropriate densities based on the local precipitation, groundwater and landform conditions, and the system stability of the total landscape.
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Affiliation(s)
- Q L Yan
- Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang 110016, China
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Schreiber SG, Hacke UG, Hamann A, Thomas BR. Genetic variation of hydraulic and wood anatomical traits in hybrid poplar and trembling aspen. THE NEW PHYTOLOGIST 2011; 190:150-160. [PMID: 21223285 DOI: 10.1111/j.1469-8137.2010.03594.x] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
Intensive forestry systems and breeding programs often include either native aspen or hybrid poplar clones, and performance and trait evaluations are mostly made within these two groups. Here, we assessed how traits with potential adaptive value varied within and across these two plant groups. Variation in nine hydraulic and wood anatomical traits as well as growth were measured in selected aspen and hybrid poplar genotypes grown at a boreal planting site in Alberta, Canada. Variability in these traits was statistically evaluated based on a blocked experimental design. We found that genotypes of trembling aspen were more resistant to cavitation, exhibited more negative water potentials, and were more water-use-efficient than hybrid poplars. Under the boreal field test conditions, which included major regional droughts, height growth was negatively correlated with branch vessel diameter (Dv ) in both aspen and hybrid poplars and differences in Dv were highly conserved in aspen trees from different provenances. Differences between the hybrid poplars and aspen provenances suggest that these two groups employ different water-use strategies. The data also suggest that vessel diameter may be a key trait in evaluating growth performance in a boreal environment.
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Affiliation(s)
- Stefan G Schreiber
- Department of Renewable Resources, University of Alberta, 739 General Services Building, Edmonton, AB, Canada T6G 2H1
| | - Uwe G Hacke
- Department of Renewable Resources, University of Alberta, 442 Earth Sciences Building, Edmonton, AB, Canada T6G 2E3
| | - Andreas Hamann
- Department of Renewable Resources, University of Alberta, 739 General Services Building, Edmonton, AB, Canada T6G 2H1
| | - Barb R Thomas
- Department of Renewable Resources, University of Alberta, 739 General Services Building, Edmonton, AB, Canada T6G 2H1
- Alberta-Pacific Forest Industries Inc., Box 8000, Boyle, AB, Canada T0A 0M0
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Rood SB, Nielsen JL, Shenton L, Gill KM, Letts MG. Effects of flooding on leaf development, transpiration, and photosynthesis in narrowleaf cottonwood, a willow-like poplar. PHOTOSYNTHESIS RESEARCH 2010; 104:31-39. [PMID: 20013353 DOI: 10.1007/s11120-009-9511-6] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/22/2009] [Accepted: 11/25/2009] [Indexed: 05/28/2023]
Abstract
The narrowleaf cottonwood, Populus angustifolia, occurs in occasionally flooded, low elevation zones along river valleys near the North American Rocky Mountains. This small poplar has narrow leaves and fine branching and thus resembles willows, which are commonly flood-tolerant. We investigated the flood response of narrowleaf cottonwoods and a related native hybrid, jackii cottonwood (P. x jackii = P. balsamifera x P. deltoides), by studying saplings of 24 clones in a greenhouse, with some pots being inundated to provide the flood treatment. Flooding slightly reduced leaf numbers (-10%), and leaf sizes were reduced by about 21% in female P. angustifolia versus a 50% reduction in the female hybrids. Flooding-reduced stomatal conductance and net photosynthetic rate, and reduced transpiration particularly in P. x jackii. The effects on foliar gas exchange declined over a 5-week interval, suggesting compensation. The moderate impact of flooding supports the hypothesis that narrowleaf cottonwoods are flood-tolerant, and we anticipate that these trees could provide traits to increase the flood tolerance of fast-growing hybrid poplars. The results further indicate that female cottonwoods may be more flood-tolerant than males, and females could be more successful in lower, flood-prone sites.
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Affiliation(s)
- Stewart B Rood
- Environmental Science Program, University of Lethbridge, Lethbridge, AB, Canada,
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