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Degradation of 2,4,6-Trinitrotoluene (TNT): Involvement of Protocatechuate 3,4-Dioxygenase (P34O) in Buttiauxella sp. S19-1. TOXICS 2021; 9:toxics9100231. [PMID: 34678927 PMCID: PMC8540567 DOI: 10.3390/toxics9100231] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/17/2021] [Revised: 09/13/2021] [Accepted: 09/17/2021] [Indexed: 11/22/2022]
Abstract
Extensive use and disposal of 2,4,6-trinitrotoluene (TNT), a primary constituent of explosives, pollutes the environment and causes severe damage to human health. Complete mineralization of TNT via bacterial degradation has recently gained research interest as an effective method for the restoration of contaminated sites. Here, screening for TNT degradation by six selected bacteria revealed that Buttiauxella sp. S19-1, possesses the strongest degrading ability. Moreover, BuP34O (a gene encoding for protocatechuate 3,4-dioxygenase—P34O, a key enzyme in the β-ketoadipate pathway) was upregulated during TNT degradation. A knockout of BuP34O in S19-1 to generate S-M1 mutant strain caused a marked reduction in TNT degradation efficiency compared to S19-1. Additionally, the EM1 mutant strain (Escherichia coli DH5α transfected with BuP34O) showed higher degradation efficiency than DH5α. Gas chromatography mass spectrometry (GC-MS) analysis of TNT degradation by S19-1 revealed 4-amino-2,6-dinitrotolune (ADNT) as the intermediate metabolite of TNT. Furthermore, the recombinant protein P34O (rP34O) expressed the activity of 2.46 µmol/min·mg. Our findings present the first report on the involvement of P34O in bacterial degradation of TNT and its metabolites, suggesting that P34O could catalyze downstream reactions in the TNT degradation pathway. In addition, the TNT-degrading ability of S19-1, a Gram-negative marine-derived bacterium, presents enormous potential for restoration of TNT-contaminated seas.
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Gust KA, Indest KJ, Lotufo G, Everman SJ, Jung CM, Ballentine ML, Hoke AV, Sowe B, Gautam A, Hammamieh R, Ji Q, Barker ND. Genomic investigations of acute munitions exposures on the health and skin microbiome composition of leopard frog (Rana pipiens) tadpoles. ENVIRONMENTAL RESEARCH 2021; 192:110245. [PMID: 32987006 DOI: 10.1016/j.envres.2020.110245] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/23/2020] [Revised: 09/16/2020] [Accepted: 09/17/2020] [Indexed: 06/11/2023]
Abstract
Natural communities of microbes inhabiting amphibian skin, the skin microbiome, are critical to supporting amphibian health and disease resistance. To enable the pro-active health assessment and management of amphibians on Army installations and beyond, we investigated the effects of acute (96h) munitions exposures to Rana pipiens (leopard frog) tadpoles and the associated skin microbiome, integrated with RNAseq-based transcriptomic responses in the tadpole host. Tadpoles were exposed to the legacy munition 2,4,6-trinitrotoluene (TNT), the new insensitive munition (IM) formulation, IMX-101, and the IM constituents nitroguinidine (NQ) and 1-methyl-3-nitroguanidine (MeNQ). The 96h LC50 values and 95% confidence intervals were 2.6 (2.4, 2.8) for ΣTNT and 68.2 (62.9, 73.9) for IMX-101, respectively. The NQ and MeNQ exposures caused no significant impacts on survival in 96h exposures even at maximum exposure levels of 3560 and 5285 mg/L, respectively. However, NQ and MeNQ, as well as TNT and IMX-101 exposures, all elicited changes in the tadpole skin microbiome profile, as evidenced by significantly increased relative proportions of the Proteobacteria with increasing exposure concentrations, and significantly decreased alpha-diversity in the NQ exposure. The potential for direct effects of munitions exposure on the skin microbiome were observed including increased abundance of munitions-tolerant phylogenetic groups, in addition to possible indirect effects on microbial flora where transcriptional responses suggestive of changes in skin mucus-layer properties, antimicrobial peptide production, and innate immune factors were observed in the tadpole host. Additional insights into the tadpole host's transcriptional response to munitions exposures indicated that TNT and IMX-101 exposures significantly enriched transcriptional expression within type-I and type-II xenobiotic metabolism pathways, where dose-responsive increases in expression were observed. Significant enrichment and increased transcriptional expression of heme and iron binding functions in the TNT exposures served as likely indicators of known mechanisms of TNT toxicity including hemolytic anemia and methemoglobinemia. The significant enrichment and dose-responsive decrease in transcriptional expression of cell cycle pathways in the IMX-101 exposures was consistent with previous observations in fish, while significant enrichment of immune-related function in response to NQ exposure were consistent with potential immune suppression at the highest NQ exposure concentration. Finally, the MeNQ exposures elicited significantly decreased transcriptional expression of keratin 16, type I, a gene likely involved in keratinization processes in amphibian skin. Overall, munitions showed the potential to alter tadpole skin microbiome composition and affect transcriptional profiles in the amphibian host, some suggestive of potential impacts on host health and immune status relevant to disease susceptibility.
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Affiliation(s)
- Kurt A Gust
- U.S. Army Engineer Research and Development Center, Environmental Laboratory, Vicksburg, MS, USA.
| | - Karl J Indest
- U.S. Army Engineer Research and Development Center, Environmental Laboratory, Vicksburg, MS, USA.
| | - Guilherme Lotufo
- U.S. Army Engineer Research and Development Center, Environmental Laboratory, Vicksburg, MS, USA.
| | | | - Carina M Jung
- U.S. Army Engineer Research and Development Center, Environmental Laboratory, Vicksburg, MS, USA.
| | - Mark L Ballentine
- U.S. Army Engineer Research and Development Center, Environmental Laboratory, Vicksburg, MS, USA.
| | - Allison V Hoke
- Medical Readiness Systems Biology, Center for Military Psychiatry and Neuroscience, Walter Reed Army Institute of Research, Silver Spring, MD, USA; ORISE fellow, Walter Reed Army Institute of Research, Silver Spring, MD, USA.
| | - Bintu Sowe
- Medical Readiness Systems Biology, Center for Military Psychiatry and Neuroscience, Walter Reed Army Institute of Research, Silver Spring, MD, USA; ORISE fellow, Walter Reed Army Institute of Research, Silver Spring, MD, USA.
| | - Aarti Gautam
- Medical Readiness Systems Biology, Center for Military Psychiatry and Neuroscience, Walter Reed Army Institute of Research, Silver Spring, MD, USA.
| | - Rasha Hammamieh
- Medical Readiness Systems Biology, Center for Military Psychiatry and Neuroscience, Walter Reed Army Institute of Research, Silver Spring, MD, USA.
| | - Qing Ji
- Bennett Aerospace, Cary, NC, USA.
| | - Natalie D Barker
- U.S. Army Engineer Research and Development Center, Environmental Laboratory, Vicksburg, MS, USA.
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Avellaneda H, Arbeli Z, Teran W, Roldan F. Transformation of TNT, 2,4-DNT, and PETN by Raoultella planticola M30b and Rhizobium radiobacter M109 and exploration of the associated enzymes. World J Microbiol Biotechnol 2020; 36:190. [PMID: 33247357 DOI: 10.1007/s11274-020-02962-8] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2020] [Accepted: 11/11/2020] [Indexed: 10/22/2022]
Abstract
The nitrated compounds 2,4-dinitrotoluene (2,4-DNT), 2,4,6-trinitrotoluene (TNT), and pentaerythritol tetranitrate (PETN) are toxic xenobiotics widely used in various industries. They often coexist as environmental contaminants. The aims of this study were to evaluate the transformation of 100 mg L-1 of TNT, 2,4-DNT, and PETN by Raoultella planticola M30b and Rhizobium radiobacter M109c and identify enzymes that may participate in the transformation. These strains were selected from 34 TNT transforming bacteria. Cupriavidus metallidurans DNT was used as a reference strain for comparison purposes. Strains DNT, M30b and M109c transformed 2,4-DNT (100%), TNT (100, 94.7 and 63.6%, respectively), and PETN (72.7, 69.3 and 90.7%, respectively). However, the presence of TNT negatively affects 2,4-DNT and PETN transformation (inhibition > 40%) in strains DNT and M109c and fully inhibited (100% inhibition) 2,4-DNT transformation in R. planticola M30b.Genomes of R. planticola M30b and R. radiobacter M109c were sequenced to identify genes related with 2,4-DNT, TNT or PETN transformation. None of the tested strains presented DNT oxygenase, which has been previously reported in the transformation of 2,4-DNT. Thus, unidentified novel enzymes in these strains are involved in 2,4-DNT transformation. Genes encoding enzymes homologous to the previously reported TNT and PETN-transforming enzymes were identified in both genomes. R. planticola M30b have homologous genes of PETN reductase and xenobiotic reductase B, while R. radiobacter M109c have homologous genes to GTN reductase and PnrA nitroreductase. The ability of these strains to transform explosive mixtures has a potentially biotechnological application in the bioremediation of contaminated environments.
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Affiliation(s)
- Hernán Avellaneda
- Facultad de Ciencias, Departamento de Biología, Unidad de Saneamiento y Biotecnología Ambiental (USBA), Pontificia Universidad Javeriana, Carrera 7 No. 43-82, Bogotá, DC, Colombia
| | - Ziv Arbeli
- Facultad de Ciencias, Departamento de Biología, Unidad de Saneamiento y Biotecnología Ambiental (USBA), Pontificia Universidad Javeriana, Carrera 7 No. 43-82, Bogotá, DC, Colombia
| | - Wilson Teran
- Facultad de Ciencias, Departamento de Biología, Biología de Plantas y Sistemas Productivos, Pontificia Universidad Javeriana, Bogotá, Colombia
| | - Fabio Roldan
- Facultad de Ciencias, Departamento de Biología, Unidad de Saneamiento y Biotecnología Ambiental (USBA), Pontificia Universidad Javeriana, Carrera 7 No. 43-82, Bogotá, DC, Colombia.
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Ali-Begloui M, Salehghamari E, Sadrai S, Ebrahimi M, Amoozegar MA, Salehi-Najafabadi A. Biotransformation of Trinitrotoluene (TNT) by Newly Isolated Slight Halophilic Bacteria. Microbiology (Reading) 2020. [DOI: 10.1134/s0026261720050033] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
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Cabrera MÁ, Márquez SL, Quezada CP, Osorio MI, Castro-Nallar E, González-Nilo FD, Pérez-Donoso JM. Biotransformation of 2,4,6-Trinitrotoluene by Pseudomonas sp. TNT3 isolated from Deception Island, Antarctica. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2020; 262:113922. [PMID: 32443190 DOI: 10.1016/j.envpol.2020.113922] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/19/2019] [Revised: 12/11/2019] [Accepted: 01/05/2020] [Indexed: 06/11/2023]
Abstract
2,4,6-Trinitrotoluene (TNT) is a nitroaromatic explosive, highly toxic and mutagenic for organisms. In this study, we report for the first time the screening and isolation of TNT-degrading bacteria from Antarctic environmental samples with potential use as bioremediation agents. Ten TNT-degrading bacterial strains were isolated from Deception Island. Among them, Pseudomonas sp. TNT3 was selected as the best candidate since it showed the highest tolerance, growth, and TNT biotransformation capabilities. Our results showed that TNT biotransformation involves the reduction of the nitro groups. Additionally, Pseudomonas sp. TNT3 was capable of transforming 100 mg/L TNT within 48 h at 28 °C, showing higher biotransformation capability than Pseudomonas putida KT2440, a known TNT-degrading bacterium. Functional annotation of Pseudomonas sp. TNT3 genome revealed a versatile set of molecular functions involved in xenobiotic degradation pathways. Two putative xenobiotic reductases (XenA_TNT3 and XenB_TNT3) were identified by means of homology searches and phylogenetic relationships. These enzymes were also characterized at molecular level using homology modelling and molecular dynamics simulations. Both enzymes share different levels of sequence similarity with other previously described TNT-degrading enzymes and with their closest potential homologues in databases.
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Affiliation(s)
- Ma Ángeles Cabrera
- Center for Bioinformatics and Integrative Biology (CBIB), Faculty of Life Sciences, Universidad Andrés Bello, Av. República 330, Santiago, Chile
| | - Sebastián L Márquez
- Center for Bioinformatics and Integrative Biology (CBIB), Faculty of Life Sciences, Universidad Andrés Bello, Av. República 330, Santiago, Chile
| | - Carolina P Quezada
- Center for Bioinformatics and Integrative Biology (CBIB), Faculty of Life Sciences, Universidad Andrés Bello, Av. República 330, Santiago, Chile
| | - Manuel I Osorio
- Center for Bioinformatics and Integrative Biology (CBIB), Faculty of Life Sciences, Universidad Andrés Bello, Av. República 330, Santiago, Chile
| | - Eduardo Castro-Nallar
- Center for Bioinformatics and Integrative Biology (CBIB), Faculty of Life Sciences, Universidad Andrés Bello, Av. República 330, Santiago, Chile
| | - Fernando D González-Nilo
- Center for Bioinformatics and Integrative Biology (CBIB), Faculty of Life Sciences, Universidad Andrés Bello, Av. República 330, Santiago, Chile
| | - José M Pérez-Donoso
- Center for Bioinformatics and Integrative Biology (CBIB), Faculty of Life Sciences, Universidad Andrés Bello, Av. República 330, Santiago, Chile.
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Khan MI, Lee J, Yoo K, Kim S, Park J. Improved TNT detoxification by starch addition in a nitrogen-fixing Methylophilus-dominant aerobic microbial consortium. JOURNAL OF HAZARDOUS MATERIALS 2015; 300:873-881. [PMID: 26342802 DOI: 10.1016/j.jhazmat.2015.08.032] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/01/2015] [Revised: 07/24/2015] [Accepted: 08/17/2015] [Indexed: 06/05/2023]
Abstract
In this study, a novel aerobic microbial consortium for the complete detoxification of 2,4,6-trinitrotoluene (TNT) was developed using starch as a slow-releasing carbon source under nitrogen-fixing conditions. Aerobic TNT biodegradation coupled with microbial growth was effectively stimulated by the co-addition of starch and TNT under nitrogen-fixing conditions. The addition of starch with TNT led to TNT mineralization via ring cleavage without accumulation of any toxic by-products, indicating improved TNT detoxification by the co-addition of starch and TNT. Pyrosequencing targeting the bacterial 16S rRNA gene suggested that Methylophilus and Pseudoxanthomonas population were significantly stimulated by the co-addition of starch and TNT and that the Methylophilus population became predominant in the consortium. Together with our previous study regarding starch-stimulated RDX (hexahydro-1,3,5-trinitro-1,3,5-triazine) degradation (Khan et al., J. Hazard. Mater. 287 (2015) 243-251), this work suggests that the co-addition of starch with a target explosive is an effective way to stimulate aerobic explosive degradation under nitrogen-fixing conditions for enhancing explosive detoxification.
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Affiliation(s)
- Muhammad Imran Khan
- Department of Civil and Environmental Engineering, College of Engineering, Yonsei University, Seoul 120-749, Republic of Korea; Department of Agronomy, University of Agriculture, Faisalabad 38040, Pakistan
| | - Jaejin Lee
- Department of Civil and Environmental Engineering, College of Engineering, Yonsei University, Seoul 120-749, Republic of Korea
| | - Keunje Yoo
- Department of Civil and Environmental Engineering, College of Engineering, Yonsei University, Seoul 120-749, Republic of Korea
| | - Seonghoon Kim
- Department of Civil and Environmental Engineering, College of Engineering, Yonsei University, Seoul 120-749, Republic of Korea
| | - Joonhong Park
- Department of Civil and Environmental Engineering, College of Engineering, Yonsei University, Seoul 120-749, Republic of Korea.
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Stenuit BA, Agathos SN. Microbial 2,4,6-trinitrotoluene degradation: could we learn from (bio)chemistry for bioremediation and vice versa? Appl Microbiol Biotechnol 2010; 88:1043-64. [DOI: 10.1007/s00253-010-2830-x] [Citation(s) in RCA: 64] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2010] [Revised: 08/06/2010] [Accepted: 08/08/2010] [Indexed: 12/11/2022]
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Singh N, Hennecke D, Hoerner J, Koerdel W, Schaeffer A. Mobility and degradation of trinitrotoluene/metabolites in soil columns: effect of soil organic carbon content. JOURNAL OF ENVIRONMENTAL SCIENCE AND HEALTH. PART A, TOXIC/HAZARDOUS SUBSTANCES & ENVIRONMENTAL ENGINEERING 2008; 43:682-693. [PMID: 18444069 DOI: 10.1080/10934520801959823] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
There has been increasing interest in enhancing natural attenuation of munitions-contaminated soils. Present study reports the effect of increasing soil organic matter content on fate and mobility of trinitrotoluene (TNT) and metabolites in soil columns. This study was performed using 30-cm-long columns containing a top 5 cm of contaminated soil as a source layer and an uncontaminated soil (25 cm) adjusted to 0.5, 1.0, 1.5 and 3.0% organic carbon (OC) content using compost. Contaminated soil layer was fortified with uniformly ring-labeled (14)C-trinitrotoluene (TNT) or 2,4-dinitrotoluene (DNT); in total there were 8 treatments. Columns were leached with synthetic rain water under unsaturated flow conditions in downside up direction. There was significant increase in the retention of both (14)C-TNT and (14)C-DNT in soils with increasing soil OC content and in 3.0% soil OC content column < 1% TNT/DNT was recovered in the leachate. Further, degradation of TNT and metabolites from contaminated soil was significantly increased and resulted in greater soil-bound residues. Formation of monoamino-dinitrotoluene (ADNTs), diamino-mononitrotoluene (DANTs) and monoamino-mononitrotoluene (ANTs) metabolites was greatly enhanced with increase in OC content of soils. Study suggests that increasing OC content of contaminated soil to 3.0% significantly enhanced the reduction of nitroaromatics to more polar amine metabolites and the formation of soil-bound residues.
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Affiliation(s)
- Neera Singh
- Division of Agricultural Chemicals, Indian Agricultural Research Institute, New Delhi, India.
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Denitration of 2,4,6-trinitrotoluene by Pseudomonas aeruginosa ESA-5 in the presence of ferrihydrite. Appl Microbiol Biotechnol 2008; 79:489-97. [DOI: 10.1007/s00253-008-1434-1] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2008] [Accepted: 02/24/2008] [Indexed: 10/22/2022]
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Travis ER, Bruce NC, Rosser SJ. Microbial and plant ecology of a long-term TNT-contaminated site. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2008; 153:119-26. [PMID: 17825462 DOI: 10.1016/j.envpol.2007.07.015] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/26/2007] [Revised: 07/19/2007] [Accepted: 07/19/2007] [Indexed: 05/17/2023]
Abstract
The contamination of the environment with explosive residues presents a serious ecological problem at sites across the world, with the highly toxic compound trinitrotoluene (TNT) the most widespread contaminant. This study examines the soil microbial community composition across a long-term TNT-contaminated site. It also investigates the extent of nitroaromatic contamination and its effect on vegetation. Concentrations of TNT and its metabolites varied across the site and this was observed to dramatically impact on the extent and diversity of the vegetation, with the most heavily contaminated area completely devoid of vegetation. Bryophytes were seen to be particularly sensitive to TNT contamination. The microbial population experienced both a reduction in culturable bacterial numbers and a shift in composition at the high concentrations of TNT. DGGE and community-level physiological profiling (CLPP) revealed a clear change in both the genetic and functional diversity of the soil when soil was contaminated with TNT.
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Affiliation(s)
- Emma R Travis
- Institute of Biomedical and Life Sciences, University of Glasgow, Bower Building, Glasgow, UK.
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Singh N, Hennecke D, Hoerner J, Koerdel W, Schaeffer A. Degradation of trinitrotoluene in contaminated soils as affected by its initial concentrations and its binding to soil organic matter fractions. JOURNAL OF ENVIRONMENTAL SCIENCE AND HEALTH. PART A, TOXIC/HAZARDOUS SUBSTANCES & ENVIRONMENTAL ENGINEERING 2008; 43:348-356. [PMID: 18273739 DOI: 10.1080/10934520701795434] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
Abstract
Trinitrotoluene (TNT), a nitroaromatics, is a major pollutant in explosive contaminated soils. Present study reports the effect of initial concentration of TNT on its degradation kinetics in soils. Soils from two contaminated sites viz. Clausthal and Elsnig, Germany, were mixed with an uncontaminated reference soil to get different initial concentrations (mg/kg) viz Clausthal-1 (54.29), Clausthal-2 (30.86), Clausthal-3 (7.05) Elsnig-1 (879.67), Elsnig-2 (86.43); Elsnig-3 (8.16) and Elsnig-4 (0.99) and were spiked with ring UL-(14)C-TNT (100KBq/50g soil). Except Elsnig-1 and Elsnig-2 soils, TNT degraded at same rate in all the soils. Higher persistence of TNT in Elsnig-1 and Elsnig-2 soils appears to be due to higher initial concentrations of nitroaromatics which may be toxic to soil microorganisms. 2-Amino-4,6-dinitrotoluene (2-ADNT) and 4-amino-2,6-dinitrotoluene (4-ADNT) were recovered as major metabolites of TNT. Distribution of bound (14)C-activity in different soil organic matter (SOM) fractions (humic acid, fulvic acid and humin) was assayed by alkali extraction of solvent extracted Clausthal-1 and Elsnig-1 soils. Results indicate that humic acid accounted for maximum bound activity followed by fulvic acid and humin fractions. Expressing (14)C-activity bound/unit weight of organic carbon content of SOM fractions showed that 3 times more (14)C-activity was bound to Elsnig humic acid than Clausthal humic acid. Similarly, activity associated with Elsnig fulvic acid was 7 times higher than that of Clausthal fulvic acid suggesting that chemical nature of SOM fractions plays a significant role in binding of contaminants.
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Affiliation(s)
- Neera Singh
- Division of Agricultural Chemicals, Indian Agricultural Research Institute, New Delhi, India.
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Smets BF, Yin H, Esteve-Nuñez A. TNT biotransformation: when chemistry confronts mineralization. Appl Microbiol Biotechnol 2007; 76:267-77. [PMID: 17534614 DOI: 10.1007/s00253-007-1008-7] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2007] [Revised: 04/19/2007] [Accepted: 04/19/2007] [Indexed: 10/23/2022]
Abstract
Our understanding of the genetics and biochemistry of microbial 2,4,6-trinitrotoluene (TNT) biotransformation has advanced significantly during the past 10 years, and biotreatment technologies have developed. In this review, we summarize this new knowledge. A number of enzyme classes involved in TNT biotransformation include the type I nitroreductases, the old yellow enzyme family, a respiration-associated nitroreductase, and possibly ring hydroxylating dioxygenases. Several strains harbor dual pathways: nitroreduction (reduction of the nitro group in TNT to a hydroxylamino and/or amino group) and denitration (reduction of the aromatic ring of TNT to Meisenheimer complexes with nitrite release). TNT can serve as a nitrogen source for some strains, and the postulated mechanism involves ammonia release from hydroxylamino intermediates. Field biotreatment technologies indicate that both stimulation of microbial nitroreduction and phytoremediation result in significant and permanent immobilization of TNT via its metabolites. While the possibility for TNT mineralization was rekindled with the discovery of TNT denitration and oxygenolytic and respiration-associated pathways, further characterization of responsible enzymes and their reaction mechanisms are required.
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Affiliation(s)
- Barth F Smets
- Institute of Environment and Resources, Technical University of Denmark, Bygningstorvet, Bldg 115, 2800 Kgs. Lyngby, Denmark.
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Caballero A, Ramos JL. A double mutant of Pseudomonas putida JLR11 deficient in the synthesis of the nitroreductase PnrA and assimilatory nitrite reductase NasB is impaired for growth on 2,4,6-trinitrotoluene (TNT). Environ Microbiol 2006; 8:1306-10. [PMID: 16817939 DOI: 10.1111/j.1462-2920.2006.01012.x] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Pseudomonas putida JLR11 can grow on 2,4,6-trinitrotoluene (TNT) as the sole nitrogen source. We created nasB (nitrite reductase), pnrA (nitroaromatic reductase) and pnrA nasB mutants and tested their growth with TNT as the sole N source. The nasB and pnrA mutants grew at a reduced rate on TNT, whereas the double nasB pnrA mutant did not. This suggests that P. putida JLR11 carries out multiple enzymatic attacks on TNT-releasing nitrite and/or ammonium. The PnrA nitroreductase plays a key role in the reduction of TNT to 2,6-dinitro-4-hydroxylaminotoluene and the subsequent release of ammonium for growth.
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Affiliation(s)
- Antonio Caballero
- Estación Experimental del Zaidin, Department of Biochemistry, Profesor Albareda 1, 18008 Granada, Spain
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Maeda T, Kubota A, Nagafuchi N, Kadokami K, Ogawa HI. Crucial problem in rapid spectrophotometric determination of 2,4,6-trinitrotoluene and its breakthrough method. J Microbiol Methods 2006; 66:568-71. [PMID: 16545473 DOI: 10.1016/j.mimet.2006.02.009] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2006] [Accepted: 02/07/2006] [Indexed: 11/21/2022]
Abstract
A rapid spectrophotometric determination for 2,4,6-trinitrotoluene (TNT) is significant because this method is suitable for simultaneous analyses of the numerous samples. We found one problem that TNT reduction products interfere with the TNT detection in this assay, and we overcame this problem by heating the samples at 95 degrees C, resulting in the production of compounds that did not interfere.
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Affiliation(s)
- Toshinari Maeda
- Department of Biological Functions and Engineering, Graduate School of Life Sciences and Systems Engineering, Kyushu Institute of Technology, 2-4 Hibikino, Wakamatsu-ku, Kitakyushu 808-0196, Japan
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Kim HY, Song HG. Purification and characterization of NAD(P)H-dependent nitroreductase I from Klebsiella sp. C1 and enzymatic transformation of 2,4,6-trinitrotoluene. Appl Microbiol Biotechnol 2005; 68:766-73. [PMID: 15789204 DOI: 10.1007/s00253-005-1950-1] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2005] [Revised: 02/24/2005] [Accepted: 02/26/2005] [Indexed: 10/25/2022]
Abstract
Three NAD(P)H-dependent nitroreductases that can transform 2,4,6-trinitrotoluene (TNT) by two reduction pathways were detected in Klebsiella sp. C1. Among these enzymes, the protein with the highest reduction activity of TNT (nitroreductase I) was purified to homogeneity using ion-exchange, hydrophobic interaction, and size exclusion chromatographies. Nitroreductase I has a molecular mass of 27 kDa as determined by SDS-PAGE, and exhibits a broad pH optimum between 5.5 and 6.5, with a temperature optimum of 30-40 degrees C. Flavin mononucleotide is most likely the natural flavin cofactor of this enzyme. The N-terminal amino acid sequence of this enzyme does not show a high degree of sequence similarity with nitroreductases from other enteric bacteria. This enzyme catalyzed the two-electron reduction of several nitroaromatic compounds with very high specific activities of NADPH oxidation. In the enzymatic transformation of TNT, 2-amino-4,6-dinitrotoluene and 2,2',6,6'-tetranitro-4,4'-azoxytoluene were detected as transformation products. Although this bacterium utilizes the direct ring reduction and subsequent denitration pathway together with a nitro group reduction pathway, metabolites in direct ring reduction of TNT could not easily be detected. Unlike other nitroreductases, nitroreductase I was able to transform hydroxylaminodinitrotoluenes (HADNT) into aminodinitrotoluenes (ADNT), and could reduce ortho isomers (2-HADNT and 2-ADNT) more easily than their para isomers (4-HADNT and 4-ADNT). Only the nitro group in the ortho position of 2,4-DNT was reduced to produce 2-hydroxylamino-4-nitrotoluene by nitroreductase I; the nitro group in the para position was not reduced.
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Affiliation(s)
- Hyoun-Young Kim
- Division of Biological Sciences, Kangwon National University, Hyoja-dong 192-1, Chuncheon, 200-701, South Korea
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Jain MR, Zinjarde SS, Deobagkar DD, Deobagkar DN. 2,4,6-trinitrotoluene transformation by a tropical marine yeast, Yarrowia lipolytica NCIM 3589. MARINE POLLUTION BULLETIN 2004; 49:783-788. [PMID: 15530522 DOI: 10.1016/j.marpolbul.2004.06.007] [Citation(s) in RCA: 37] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
Yarrowia lipolytica NCIM 3589, a tropical marine degrader of hydrocarbons and triglycerides transformed 2,4,6-trinitrotoluene (TNT) very efficiently. Though this yeast could not utilize TNT as the sole carbon or nitrogen source, it was capable of reducing the nitro groups in TNT to aminodinitrotoluene (ADNT). In a complete medium containing glucose and ammonium sulphate as the available carbon and nitrogen sources respectively, the culture was able to completely transform 1 mM (227 ppm) of TNT under such conditions. A dual pathway was found to be functional, one of which resulted in the formation of the hydride-Meisenheimer complex (H(-)TNT) as a transiently accumulating metabolite that was subsequently denitrated to 2,4-dinitrotoluene (2,4-DNT), whereas the other pathway resulted in the formation of amino derivatives. The presence of increasing amounts of reducing equivalents in the form of glucose promoted better growth and the nitroreductases of this yeast to reduce the aromatic ring to 2,4-DNT although, the reduction of the nitro groups to amino groups was the major functional pathway. The ability of this tropical marine yeast to transform TNT into products such as 2,4-DNT which in turn could be metabolized by other microbes has implications in the use of this yeast for bioremediation of TNT polluted marine environments.
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Affiliation(s)
- M R Jain
- Molecular Biology Research Laboratory, Department of Zoology, University of Pune, Pune 411007, India
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Popesku JT, Singh A, Zhao JS, Hawari J, Ward OP. Metabolite production during transformation of 2,4,6-trinitrotoluene (TNT) by a mixed culture acclimated and maintained on crude oil-containing media. Appl Microbiol Biotechnol 2004; 65:739-46. [PMID: 15133643 DOI: 10.1007/s00253-004-1625-3] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2004] [Revised: 03/29/2004] [Accepted: 04/07/2004] [Indexed: 11/24/2022]
Abstract
Metabolites formed during 2,4,6-trinitrotoluene (TNT) removal by a mixed bacterial culture (acclimated and maintained on crude oil-containing medium and capable of high rates of TNT removal) were characterized. In resting cell experiments in the absence of glucose, 46.2 mg/l TNT were removed in 171 h (87.5% removal), with a combined total formation of 7.7 mg/l amino-4,6-dinitrotoluene (ADNT) and 0.3 mg/l 4,4'-azoxytetranitrotoluene and 2',4-azoxytetranitrotoluene, leaving 70% of the initial TNT unaccounted for. In the presence of glucose, resting cells removed 45.4 mg/l TNT in 49 h (95.5% removal), with 9.1 mg/l ADNT and 2.4 mg/l azoxy compounds being produced, leaving 70.3% of the TNT unaccounted for. Growing cells (glucose present) were capable of removing 44.2 mg/l TNT within 21 h (97.9% removal), with the concomitant formation of 1.8 mg/l ADNTs and 2.2 mg/l azoxy compounds. Denitrated TNT in the form of 2,6-dinitrotoluene was also produced in growing cells with a maximum amount of 1.31 mg/l after 28 h, followed by a slight decrease with time, leaving 88.5% of the initial TNT unaccounted for after 171 h. Radiolabeled (14)C-TNT studies revealed 4.14% mineralization after an incubation period of 163 days with growing cells.
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Affiliation(s)
- Jason T Popesku
- Department of Biology, University of Waterloo, Waterloo, N2L 3G1, Ontario, Canada
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Lewis TA, Newcombe DA, Crawford RL. Bioremediation of soils contaminated with explosives. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2004; 70:291-307. [PMID: 15016438 DOI: 10.1016/j.jenvman.2003.12.005] [Citation(s) in RCA: 97] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/14/2002] [Revised: 12/09/2003] [Accepted: 12/09/2003] [Indexed: 05/24/2023]
Abstract
The large-scale industrial production and processing of munitions such as 2,4,6-trinitrotoluene (TNT) over the past 100 years led to the disposal of wastes containing explosives and nitrated organic by-products into the environment. In the US, the Army alone has estimated that over 1.2 million tons of soil have been contaminated with explosives, and the impact of explosives contamination in other countries is of similar magnitude. In recent years, growing concern about the health and ecological threats posed by man-made chemicals have led to studies of the toxicology of explosives, which have identified toxic and mutagenic effects of the common military explosives and their transformation products (Bruns-Nagel et al., 1999a; Fuchs et al., 2001; Homma-Takeda et al., 2002; Honeycutt et al., 1996; Rosenblatt et al., 1991; Spanggord et al., 1982; Tan et al., 1992 and Won et al., 1976). Because the cleanup of areas contaminated by explosives is now mandated because of public health concerns, considerable effort has been invested in finding economical remediation technologies. Biological treatment processes are often considered, since these are usually the least expensive means of destroying organic pollution. This review examines the most important groups of chemicals that must be treated at sites contaminated by explosives processing, the chemical and biological transformations they undergo, and commercial processes developed to exploit these transformations for treatment of contaminated soil. We critically examine about 150 papers on the topic, including approximately 60 published within the past 5 years.
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Affiliation(s)
- Thomas A Lewis
- Department of Microbiology and Molecular Genetics, University of Vermont, Burlington, VT 05405, USA
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Kim HY, Song HG. Transformation and mineralization of 2,4,6-trinitrotoluene by the white rot fungus Irpex lacteus. Appl Microbiol Biotechnol 2003; 61:150-6. [PMID: 12655457 DOI: 10.1007/s00253-002-1211-5] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2002] [Revised: 11/20/2002] [Accepted: 11/29/2002] [Indexed: 10/25/2022]
Abstract
Unlike other 2,4,6-trinitrotoluene (TNT)-degrading white rot fungi, including Phanerochaete chrysoporium, initial metabolism of TNT by Irpex lacteus was found to occur through two different transformation pathways. Metabolites of the nitro group reduction pathway were confirmed with the standard compounds, and the formation of hydride-Meisenheimer complex of TNT (H(-)-TNT) formed in the denitration pathway was identified with LC/MS and by LC/photodiode array (PDA) detection. The molecular weight of the H(-)-TNT complex was identified as 228 m/z, and the UV-visible absorption spectrum, recorded with a PDA detector, proved the identity of this metabolite (RT, 18.7 min; lambda(max) 254, 474, 557 nm) by comparison with the authentic synthetic H(-)-TNT (RT 18.7 min; lambda(max) 261, 474, 563 nm). Mineralization of [U-(14)C]TNT by I. lacteus was also measured in static and shaken cultures. The mineralization rate of TNT in the static culture was higher than that in the shaken culture, and addition of Tween 80 (final concentration 1%) enhanced the mineralization of TNT in the static culture, resulting in 30.57% of CO(2) evolution from the radiolabeled TNT added. The high TNT mineralization capability of I. lacteus seemed to be the result of simultaneous utilization of the denitration pathway, which is more favorable for the ring cleavage and mineralization of TNT, together with the nitro group reduction pathway.
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Affiliation(s)
- H-Y Kim
- Division of Biological Sciences, Kangwon National University, Hyoja-dong 192-1, 200-701 Chuncheon, South Korea
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Rosser SJ, Basran A, Travis ER, French CE, Bruce NC. Microbial transformations of explosives. ADVANCES IN APPLIED MICROBIOLOGY 2002; 49:1-35. [PMID: 11757347 DOI: 10.1016/s0065-2164(01)49008-3] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
Affiliation(s)
- S J Rosser
- Institute of Biotechnology, University of Cambridge, Tennis Court Road, Cambridge, CB2 1QT, United Kingdom
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2,4,6-Trinitrotoluene (TNT) tolerance and biotransformation potential of microfungi isolated from TNT-contaminated soil. ACTA ACUST UNITED AC 2002. [DOI: 10.1017/s0953756202005609] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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Affiliation(s)
- C E French
- Institute of Cell and Molecular Biology, University of Edinburgh, Mayfield Road, Edinburgh EH9 3JR, UK.
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Esteve-Núñez A, Caballero A, Ramos JL. Biological degradation of 2,4,6-trinitrotoluene. Microbiol Mol Biol Rev 2001; 65:335-52, table of contents. [PMID: 11527999 PMCID: PMC99030 DOI: 10.1128/mmbr.65.3.335-352.2001] [Citation(s) in RCA: 255] [Impact Index Per Article: 11.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Nitroaromatic compounds are xenobiotics that have found multiple applications in the synthesis of foams, pharmaceuticals, pesticides, and explosives. These compounds are toxic and recalcitrant and are degraded relatively slowly in the environment by microorganisms. 2,4,6-Trinitrotoluene (TNT) is the most widely used nitroaromatic compound. Certain strains of Pseudomonas and fungi can use TNT as a nitrogen source through the removal of nitrogen as nitrite from TNT under aerobic conditions and the further reduction of the released nitrite to ammonium, which is incorporated into carbon skeletons. Phanerochaete chrysosporium and other fungi mineralize TNT under ligninolytic conditions by converting it into reduced TNT intermediates, which are excreted to the external milieu, where they are substrates for ligninolytic enzymes. Most if not all aerobic microorganisms reduce TNT to the corresponding amino derivatives via the formation of nitroso and hydroxylamine intermediates. Condensation of the latter compounds yields highly recalcitrant azoxytetranitrotoluenes. Anaerobic microorganisms can also degrade TNT through different pathways. One pathway, found in Desulfovibrio and Clostridium, involves reduction of TNT to triaminotoluene; subsequent steps are still not known. Some Clostridium species may reduce TNT to hydroxylaminodinitrotoluenes, which are then further metabolized. Another pathway has been described in Pseudomonas sp. strain JLR11 and involves nitrite release and further reduction to ammonium, with almost 85% of the N-TNT incorporated as organic N in the cells. It was recently reported that in this strain TNT can serve as a final electron acceptor in respiratory chains and that the reduction of TNT is coupled to ATP synthesis. In this review we also discuss a number of biotechnological applications of bacteria and fungi, including slurry reactors, composting, and land farming, to remove TNT from polluted soils. These treatments have been designed to achieve mineralization or reduction of TNT and immobilization of its amino derivatives on humic material. These approaches are highly efficient in removing TNT, and increasing amounts of research into the potential usefulness of phytoremediation, rhizophytoremediation, and transgenic plants with bacterial genes for TNT removal are being done.
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Affiliation(s)
- A Esteve-Núñez
- Department of Biochemistry and Molecular and Cellular Biology of Plants, Estación Experimental del Zaidín, Consejo Superior de Investigaciones Cientificas, Apdo Correos 419, E-18008 Granada, Spain
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Oh B, Sarath G, Shea PJ, Drijber RA, Comfort SD. Rapid spectrophotometric determination of 2,4,6-trinitrotoluene in a Pseudomonas enzyme assay. J Microbiol Methods 2000; 42:149-58. [PMID: 11018271 DOI: 10.1016/s0167-7012(00)00187-1] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Abstract
Although TNT (2,4,6-trinitrotoluene) and its degradation products can be quantified by HPLC, this method is not suitable for simultaneous analyses of the numerous samples typically encountered in enzyme studies. To solve this problem, we developed a simple and rapid spectrophotometric assay for TNT and tested the procedure using partially purified nitroreductase(s) from a Pseudomonas aeruginosa isolate, which transformed TNT in the culture medium. In highly alkaline solution, TNT (pK(a)=11.99) exhibits significant absorbance at 447 nm, while major metabolites, 2-amino-4, 6-dinitrotoluene (2ADNT), 4-amino-2,6-dinitrotoluene (4ADNT), and 2,6-diamino-4-nitrotoluene (2,6DANT) display no absorbance at this wavelength. Assay mixtures of TNT, Tris-HCl buffer, a reductant, and the enzyme(s) were analyzed by measuring absorbance 4 min after adjusting the pH to 12.2. TNT transformation to colorless metabolites was linear with respect to protein and substrate concentrations. Using the assay, we determined that TNT nitroreductase(s) from the isolate required an electron donor and preferred NADH to NADPH. TNT transformation increased when NAD was recycled to NADH using glucose-6-phosphate (GP) and glucose-6-phosphate dehydrogenase (GPDH). Enzymatic transformation of TNT was completely inhibited by Cu(2+) (5 mM) and was partially inhibited by other divalent metallic cations. Because the assay is sensitive to ammonium sulfate, dithiothreitol, ascorbic acid, and sodium phosphate, extracts should be assayed in the absence of these components.
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Affiliation(s)
- B Oh
- School of Natural Resource Sciences, University of Nebraska, Lincoln, NE 68583-0758, USA
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Kutty R, Purohit HJ, Khanna P. Isolation and characterization of aPseudomonassp. strain PH1 utilizing meta-aminophenol. Can J Microbiol 2000. [DOI: 10.1139/w99-132] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Pseudomonas sp. strain PH1 was isolated from soil contaminated with pharmaceutical and dye industry waste. The isolate PH1 could use m-aminophenol as a sole source of carbon, nitrogen, and energy to support the growth. PH1 could degrade up to 0.32 mM m-aminophenol in 120 h, when provided as nitrogen source at 0.4 mM concentration with citrate (0.5 mM) as a carbon source in the growth medium. The presence of ammonium chloride as an additional nitrogen source repressed the degradation of m-aminophenol by PH1. To identify strain PH1, the 16S rDNA sequence was amplified by PCR using conserved eubacterial primers. The FASTA program was used to analyze the 16S rDNA sequence and the resulting homology patterns suggested that PH1 is a Pseudomonas.Key words: m-aminophenol, resorcinol, DNA sequencing.
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Hundal LS, Singh J, Bier EL, Shea PJ, Comfort SD, Powers WL. Removal of TNT and RDX from water and soil using iron metal. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 1997; 97:55-64. [PMID: 15093378 DOI: 10.1016/s0269-7491(97)00081-x] [Citation(s) in RCA: 34] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/16/1996] [Accepted: 05/26/1997] [Indexed: 05/24/2023]
Abstract
Contaminated water and soil at active or abandoned munitions plants is a serious problem since these compounds pose risks to human health and can be toxic to aquatic and terrestrial life. Our objective was to determine if zero-valent iron (Fe(0)) could be used to promote remediation of water and soil contaminated with 2,4,6-trinitrotoluene (TNT) and hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX). As little as 1% Fe(0) (w/v) removed 70 mg TNT litre(-1) from aqueous solution within 8 h and removed 32 mg RDX litre(-1) within 96 h. Treating slurries (1:5 soil:water) of highly contaminated soil (5200 mg TNT and 6400 mg RDX kg(-1) soil) from the former Nebraska Ordnance Plant (NOP) with 10% Fe(0) (w/w soil) reduced CH(3)CN-extractable TNT and RDX concentrations below USEPA remediation goals (17.2 mg TNT and 5.8 mg RDX kg(-1)). Sequential treatment of a TNT-contaminated solution (70 mg TNT litre(-1) spiked with (14)C-TNT) with Fe(0) (5% w/v) followed by H(2)O(2) (1% v/v) completely destroyed TNT and removed about 94% of the (14)C from solution, 48% of which was mineralized to (14)CO(2) within 8 h. Fe(0)-treated TNT also was more susceptible to biological mineralization. Our observations indicate that Fe(0) alone, Fe(0) followed by H(2)O(2), or Fe(0) in combination with biotic treatment can be used for effective remediation of munitions-contaminated water and soil.
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Affiliation(s)
- L S Hundal
- Institute of Agriculture and Natural Resources, University of Nebraska, Lincoln, Nebraska 68583-0915, USA
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