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Aguilera-Torres C, Riveros G, Morales LV, Sierra-Almeida A, Schoebitz M, Hasbún R. Relieving your stress: PGPB associated with Andean xerophytic plants are most abundant and active on the most extreme slopes. Front Microbiol 2023; 13:1062414. [PMID: 36741893 PMCID: PMC9889642 DOI: 10.3389/fmicb.2022.1062414] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2022] [Accepted: 12/30/2022] [Indexed: 01/19/2023] Open
Abstract
Introduction Plants interact with plant growth-promoting bacteria (PGPB), especially under stress condition in natural and agricultural systems. Although a potentially beneficial microbiome has been found associated to plants from alpine systems, this plant- PGPB interaction has been scarcely studied. Nevados de Chillán Complex hold one of the southernmost xerophytic formations in Chile. Plant species living there have to cope with drought and extreme temperatures during the growing season period, microclimatic conditions that become harsher on equatorial than polar slopes, and where the interaction with PGPB could be key for plant survival. Our goal was to study the abundance and activity of different PGPB associated to two abundant plant species of Andean xerophytic formations on contrasting slopes. Methods Twenty individuals of Berberis empetrifolia and Azorella prolifera shrubs were selected growing on a north and south slope nearby Las Fumarolas, at 2,050 m elevation. On each slope, microclimate based on temperature and moisture conditions were monitored throughout the growing period (oct. - apr.). Chemical properties of the soil under plant species canopies were also characterized. Bacterial abundance was measured as Log CFU g-1 from soil samples collected from each individual and slope. Then, the most abundant bacterial colonies were selected, and different hormonal (indoleacetic acid) and enzymatic (nitrogenase, phosphatase, ACC-deaminase) mechanisms that promote plant growth were assessed and measured. Results and Discussion Extreme temperatures were observed in the north facing slope, recording the hottest days (41 vs. 36°C) and coldest nights (-9.9 vs. 6.6°C). Moreover, air and soil moisture were lower on north than on south slope, especially late in the growing season. We found that bacterial abundance was higher in soils on north than on south slope but only under B. empetrifolia canopy. Moreover, the activity of plant growth-promoting mechanisms varied between slopes, being on average higher on north than on south slope, but with plant species-dependent trends. Our work showed how the environmental heterogeneity at microscale in alpine systems (slope and plant species identity) underlies variations in the abundance and plant growth promoting activity of the microorganisms present under the plant canopy of the Andean xerophytic formations and highlight the importance of PGPB from harsh systems as biotechnological tools for restoration.
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Affiliation(s)
- Carla Aguilera-Torres
- Grupo de Ecofisiología Térmica, Facultad de Ciencias Naturales y Oceanográficas, Departamento de Botánica, Universidad de Concepción, Concepción, Chile,Cape Horn International Center (CHIC), Puerto Williams, Chile,Rizoma, Centro de Estudios Agroecológicos y Botánicos, Valparaíso, Chile
| | - Gustavo Riveros
- Laboratorio de Microbiología de Suelos, Departamento de Suelos y Recursos Naturales, Facultad de Agronomía, Universidad de Concepción, Concepción, Chile
| | - Loreto V. Morales
- Grupo de Ecofisiología Térmica, Facultad de Ciencias Naturales y Oceanográficas, Departamento de Botánica, Universidad de Concepción, Concepción, Chile,Cape Horn International Center (CHIC), Puerto Williams, Chile
| | - Angela Sierra-Almeida
- Grupo de Ecofisiología Térmica, Facultad de Ciencias Naturales y Oceanográficas, Departamento de Botánica, Universidad de Concepción, Concepción, Chile,Cape Horn International Center (CHIC), Puerto Williams, Chile,*Correspondence: Angela Sierra-Almeida,
| | - Mauricio Schoebitz
- Laboratorio de Microbiología de Suelos, Departamento de Suelos y Recursos Naturales, Facultad de Agronomía, Universidad de Concepción, Concepción, Chile,Laboratorio de Biopelículas y Microbiología Ambiental, Centro de Biotecnología, Universidad de Concepción, Concepción, Chile
| | - Rodrigo Hasbún
- Laboratorio de Epigenética Vegetal, Facultad de Ciencias Forestales, Departamento de Silvicultura, Universidad de Concepción, Concepción, Chile
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Strieth D, Di Nonno S, Stiefelmaier J, Kollmen J, Geib D, Ulber R. Co-cultivation of diazotrophic terrestrial cyanobacteria and Arabidopsis thaliana. Eng Life Sci 2021; 21:126-136. [PMID: 33716612 PMCID: PMC7923583 DOI: 10.1002/elsc.202000068] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2020] [Revised: 09/29/2020] [Accepted: 09/30/2020] [Indexed: 11/08/2022] Open
Abstract
Diazotrophic cyanobacteria are able to fix N2 from the atmosphere and release it as bioavailable nitrogen what other organisms can utilize. Thus, they could be used as living nitrogen supplier whereby the use of fertilizer could be reduced in agricultural industry what results in a decrease of laughing gas released during fertilizer production. The diazotroph cyanobacterium Desmonostoc muscorum (D. muscorum) was characterized in shake flasks cultivated in nitrogen-free and nitrogen-containing medium. Similar growth rates were reached in both cultivations and the release of ammonium by D. muscorum was detected under nitrogen depletion. Subsequently, D. muscorum was co-cultivated with Arabidopsis thaliana (A. thaliana) in nitrogen-free medium. Additionally, the plant was cultivated in nitrogen containing and nitrogen-free medium without D. muscorum as reference. A co-cultivation led to higher growth rates of the cyanobacterium and similar growth of A. thaliana with similar maximum photochemical efficiency of photosystem II compared to the growth of nitrogen containing medium. Further, accumulation of cyanobacterial cells around the roots of A. thaliana was detected, indicating a successfully induced artificial symbiosis. Based on these results, D. muscorum could be a promising cyanobacterium as living nitrogen supplier for plants.
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Affiliation(s)
- Dorina Strieth
- Bioprocess EngineeringTechnical University KaiserslauternKaiserslauternGermany
| | - Sarah Di Nonno
- Bioprocess EngineeringTechnical University KaiserslauternKaiserslauternGermany
| | - Judith Stiefelmaier
- Bioprocess EngineeringTechnical University KaiserslauternKaiserslauternGermany
| | - Jonas Kollmen
- Bioprocess EngineeringTechnical University KaiserslauternKaiserslauternGermany
| | - Doris Geib
- Bioprocess EngineeringTechnical University KaiserslauternKaiserslauternGermany
| | - Roland Ulber
- Bioprocess EngineeringTechnical University KaiserslauternKaiserslauternGermany
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Coban O, Williams M, Bebout BM. Mechanisms of nitrogen attenuation from seawater by two microbial mats. WATER RESEARCH 2018; 147:373-381. [PMID: 30326399 DOI: 10.1016/j.watres.2018.09.044] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/06/2018] [Revised: 08/21/2018] [Accepted: 09/23/2018] [Indexed: 06/08/2023]
Abstract
Microbial mats, due to their high microbial diversity, have the potential to express most biogeochemical cycling processes, highlighting their prospective use in bioremediation of various environmental contaminants. In this study the mechanisms of nitrogen attenuation were investigated in naturally occurring microbial mats from Elkhorn Slough, Monterey Bay, CA, USA, and Baja California Sur, Mexico. Key processes responsible for this removal were evaluated using quantification of functional genes related to nitrification, denitrification, and nitrogen fixation. Both microbial mats were capable of removing high (up to 2 mM) concentrations of ammonium and nitrate. Ammonium assimilation rates measured for Elkhorn Slough mats showed that this process was responsible for most of the ammonium uptake in these mats. While Elkhorn Slough mats did not show any evidence of nitrogen removal pathways other than microbial assimilation, Baja mats exhibited the potential for nitrification, denitrification, and DNRA as well as assimilation. The results of this study demonstrate the potential of microbial mats for bioremediation of nitrogenous pollutants independent of the mechanisms responsible for their removal.
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Affiliation(s)
- Oksana Coban
- Exobiology Branch, NASA Ames Research Center, Moffett Field, CA, 94035, USA.
| | - MiKalley Williams
- Exobiology Branch, NASA Ames Research Center, Moffett Field, CA, 94035, USA
| | - Brad M Bebout
- Exobiology Branch, NASA Ames Research Center, Moffett Field, CA, 94035, USA
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Rousk K, Sorensen PL, Michelsen A. What drives biological nitrogen fixation in high arctic tundra: Moisture or temperature? Ecosphere 2018. [DOI: 10.1002/ecs2.2117] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022] Open
Affiliation(s)
- Kathrin Rousk
- Department of Biology; Terrestrial Ecology Section; University of Copenhagen; Universitetsparken 15 2100 Copenhagen Denmark
- Center for Permafrost (CENPERM); University of Copenhagen; Øster Voldgade 10 1350 Copenhagen Denmark
| | - Pernille Laerkedal Sorensen
- Department of Biology; Terrestrial Ecology Section; University of Copenhagen; Universitetsparken 15 2100 Copenhagen Denmark
| | - Anders Michelsen
- Department of Biology; Terrestrial Ecology Section; University of Copenhagen; Universitetsparken 15 2100 Copenhagen Denmark
- Center for Permafrost (CENPERM); University of Copenhagen; Øster Voldgade 10 1350 Copenhagen Denmark
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Griffith JC, Lee WG, Orlovich DA, Summerfield TC. Contrasting bacterial communities in two indigenous Chionochloa (Poaceae) grassland soils in New Zealand. PLoS One 2017; 12:e0179652. [PMID: 28658306 PMCID: PMC5489180 DOI: 10.1371/journal.pone.0179652] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2017] [Accepted: 06/01/2017] [Indexed: 11/18/2022] Open
Abstract
The cultivation of grasslands can modify both bacterial community structure and impact on nutrient cycling as well as the productivity and diversity of plant communities. In this study, two pristine New Zealand grassland sites dominated by indigenous tall tussocks (Chionochloa pallens or C. teretifolia) were examined to investigate the extent and predictability of variation of the bacterial community. The contribution of free-living bacteria to biological nitrogen fixation is predicted to be ecologically significant in these soils; therefore, the diazotrophic community was also examined. The C. teretifolia site had N-poor and poorly-drained peaty soils, and the C. pallens had N-rich and well-drained fertile soils. These soils also differ in the proportion of organic carbon (C), Olsen phosphorus (P) and soil pH. The nutrient-rich soils showed increased relative abundances of some copiotrophic bacterial taxa (including members of the Proteobacteria, Bacteroidetes and Firmicutes phyla). Other copiotrophs, Actinobacteria and the oliogotrophic Acidobacteria showed increased relative abundance in nutrient-poor soils. Greater diversity based on 16S rRNA gene sequences and the Tax4Fun prediction of enhanced spore formation associated with nutrient-rich soils could indicate increased resilience of the bacterial community. The two sites had distinct diazotrophic communities with higher diversity in C. teretifolia soils that had less available nitrate and ammonium, potentially indicating increased resilience of the diazotroph community at this site. The C. teretifolia soils had more 16S rRNA gene and nifH copies per g soil than the nutrient rich site. However, the proportion of the bacterial community that was diazotrophic was similar in the two soils. We suggest that edaphic and vegetation factors are contributing to major differences in the composition and diversity of total bacterial and diazotrophic communities at these sites. We predict the differences in the communities at the two sites will result in different responses to environmental change.
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Patova E, Sivkov M, Patova A. Nitrogen fixation activity in biological soil crusts dominated by cyanobacteria in the Subpolar Urals (European North-East Russia). FEMS Microbiol Ecol 2016; 92:fiw131. [DOI: 10.1093/femsec/fiw131] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 06/08/2016] [Indexed: 11/14/2022] Open
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Pushkareva E, Johansen JR, Elster J. A review of the ecology, ecophysiology and biodiversity of microalgae in Arctic soil crusts. Polar Biol 2016. [DOI: 10.1007/s00300-016-1902-5] [Citation(s) in RCA: 47] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Patterns and Controls on Nitrogen Cycling of Biological Soil Crusts. BIOLOGICAL SOIL CRUSTS: AN ORGANIZING PRINCIPLE IN DRYLANDS 2016. [DOI: 10.1007/978-3-319-30214-0_14] [Citation(s) in RCA: 87] [Impact Index Per Article: 10.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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Gundale MJ, Nilsson M, Bansal S, Jäderlund A. The interactive effects of temperature and light on biological nitrogen fixation in boreal forests. THE NEW PHYTOLOGIST 2012; 194:453-463. [PMID: 22329746 DOI: 10.1111/j.1469-8137.2012.04071.x] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
Plant productivity is predicted to increase in northern latitudes as a result of climate warming; however, this may depend on whether biological nitrogen (N)-fixation also increases. We evaluated how the variation in temperature and light affects N-fixation by two boreal feather mosses, Pleurozium schreberi and Hylocomium splendens, which are the primary source of N-fixation in most boreal environments. We measured N-fixation rates 2 and 4 wk after exposure to a factorial combination of environments of normal, intermediate and high temperature (16.3, 22.0 and 30.3°C) and light (148.0, 295.7 and 517.3 μmol m(-2) s(-1)). Our results showed that P. schreberi achieved higher N-fixation rates relative to H. splendens in response to warming treatments, but that the highest warming treatment eventually caused N-fixation to decline for both species. Light strongly interacted with warming treatments, having positive effects at low or intermediate temperatures and damaging effects at high temperatures. These results suggest that climate warming may increase N-fixation in boreal forests, but that increased shading by the forest canopy or the occurrence of extreme temperature events could limit increases. They also suggest that P. schreberi may become a larger source of N in boreal forests relative to H. splendens as climate warming progresses.
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Affiliation(s)
- Michael J Gundale
- Department of Forest Ecology and Management, Swedish University of Agricultural Sciences, SE901-83 Umeå, Sweden
| | - Madeleine Nilsson
- Department of Forest Ecology and Management, Swedish University of Agricultural Sciences, SE901-83 Umeå, Sweden
| | - Sheel Bansal
- Department of Forest Ecology and Management, Swedish University of Agricultural Sciences, SE901-83 Umeå, Sweden
| | - Anders Jäderlund
- Department of Forest Ecology and Management, Swedish University of Agricultural Sciences, SE901-83 Umeå, Sweden
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Menge DNL. Conditions Under Which Nitrogen Can Limit Steady-State Net Primary Production in a General Class of Ecosystem Models. Ecosystems 2011. [DOI: 10.1007/s10021-011-9426-x] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Teng Q, Sun B, Fu X, Li S, Cui Z, Cao H. Analysis of nifH gene diversity in red soil amended with manure in Jiangxi, south China. J Microbiol 2009; 47:135-41. [DOI: 10.1007/s12275-008-0184-1] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2008] [Accepted: 11/04/2008] [Indexed: 11/29/2022]
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Deslippe JR, Egger KN, Henry GHR. Impacts of warming and fertilization on nitrogen-fixing microbial communities in the Canadian High Arctic. FEMS Microbiol Ecol 2005; 53:41-50. [PMID: 16329928 DOI: 10.1016/j.femsec.2004.12.002] [Citation(s) in RCA: 73] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2004] [Revised: 10/29/2004] [Accepted: 12/06/2004] [Indexed: 11/22/2022] Open
Abstract
The impacts of simulated climate change (warming and fertilization treatments) on diazotroph community structure and activity were investigated at Alexandra Fiord, Ellesmere Island, Canada. Open Top Chambers, which increased growing season temperatures by 1-3 degrees C, were randomly placed in a dwarf-shrub and cushion-plant dominated mesic tundra site in 1995. In 2000 and 2001 20N:20P2O5:20K2O fertilizer was applied at a rate of 5 gm(-2) year(-1). Estimates of nitrogen fixation rates were made in the field by acetylene reduction assays (ARA). Higher rates of N fixation were observed 19-35 days post-fertilization but were otherwise unaffected by treatments. However, moss cover was significantly positively associated with ARA rate. NifH gene variants were amplified from bulk soil DNA and analyzed by terminal restriction fragment length polymorphism analysis. Non-metric multidimensional scaling was used to ordinate treatment plots in nifH genotype space. NifH gene communities were more strongly structured by the warming treatment late in the growing season, suggesting that an annual succession in diazotroph community composition occurs.
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Affiliation(s)
- Julie R Deslippe
- Ecosystem Science & Management Program, University of Northern British Columbia, Prince George, BC, Canada V2N 4Z9
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