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For: Yin R, Zhang Y, Zhou X, Kwoh CK. Time series computational prediction of vaccines for influenza A H3N2 with recurrent neural networks. J Bioinform Comput Biol 2021;18:2040002. [PMID: 32336247 DOI: 10.1142/s0219720020400028] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Number Cited by Other Article(s)
1
Cai C, Li J, Xia Y, Li W. FluPMT: Prediction of Predominant Strains of Influenza A Viruses via Multi-Task Learning. IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 2024;21:1254-1263. [PMID: 38498763 DOI: 10.1109/tcbb.2024.3378468] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/20/2024]
2
Yin R, Ye B, Bian J. CLCAP: Contrastive learning improves antigenicity prediction for influenza A virus using convolutional neural networks. Methods 2023;220:S1046-2023(23)00180-9. [PMID: 39491098 DOI: 10.1016/j.ymeth.2023.10.010] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2023] [Revised: 10/05/2023] [Accepted: 10/23/2023] [Indexed: 11/05/2024]  Open
3
Garjani A, Chegini AM, Salehi M, Tabibzadeh A, Yousefi P, Razizadeh MH, Esghaei M, Esghaei M, Rohban MH. Forecasting influenza hemagglutinin mutations through the lens of anomaly detection. Sci Rep 2023;13:14944. [PMID: 37696867 PMCID: PMC10495359 DOI: 10.1038/s41598-023-42089-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2022] [Accepted: 09/05/2023] [Indexed: 09/13/2023]  Open
4
Yin R, Luo Z, Zhuang P, Zeng M, Li M, Lin Z, Kwoh CK. ViPal: A framework for virulence prediction of influenza viruses with prior viral knowledge using genomic sequences. J Biomed Inform 2023;142:104388. [PMID: 37178781 PMCID: PMC10602211 DOI: 10.1016/j.jbi.2023.104388] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2023] [Revised: 04/30/2023] [Accepted: 05/07/2023] [Indexed: 05/15/2023]
5
Yin R, Thwin NN, Zhuang P, Lin Z, Kwoh CK. IAV-CNN: A 2D Convolutional Neural Network Model to Predict Antigenic Variants of Influenza A Virus. IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 2022;19:3497-3506. [PMID: 34469306 DOI: 10.1109/tcbb.2021.3108971] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
6
Yin R, Zhu X, Zeng M, Wu P, Li M, Kwoh CK. A framework for predicting variable-length epitopes of human-adapted viruses using machine learning methods. Brief Bioinform 2022;23:6645487. [PMID: 35849093 DOI: 10.1093/bib/bbac281] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2022] [Revised: 06/16/2022] [Accepted: 06/17/2022] [Indexed: 11/14/2022]  Open
7
Abbas ME, Chengzhang Z, Fathalla A, Xiao Y. End-to-end antigenic variant generation for H1N1 influenza HA protein using sequence to sequence models. PLoS One 2022;17:e0266198. [PMID: 35344562 PMCID: PMC8959165 DOI: 10.1371/journal.pone.0266198] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2021] [Accepted: 03/16/2022] [Indexed: 11/23/2022]  Open
8
Classification of COVID-19 and Influenza Patients Using Deep Learning. CONTRAST MEDIA & MOLECULAR IMAGING 2022;2022:8549707. [PMID: 35280712 PMCID: PMC8884121 DOI: 10.1155/2022/8549707] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/17/2021] [Accepted: 01/26/2022] [Indexed: 12/13/2022]
9
Yin R, Luo Z, Kwoh CK. Exploring the Lethality of Human-Adapted Coronavirus Through Alignment-Free Machine Learning Approaches Using Genomic Sequences. Curr Genomics 2021;22:583-595. [PMID: 35386190 PMCID: PMC8922323 DOI: 10.2174/1389202923666211221110857] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2021] [Revised: 12/02/2021] [Accepted: 12/14/2021] [Indexed: 11/29/2022]  Open
10
Dong J, Wu H, Zhou D, Li K, Zhang Y, Ji H, Tong Z, Lou S, Liu Z. Application of Big Data and Artificial Intelligence in COVID-19 Prevention, Diagnosis, Treatment and Management Decisions in China. J Med Syst 2021;45:84. [PMID: 34302549 PMCID: PMC8308073 DOI: 10.1007/s10916-021-01757-0] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2021] [Accepted: 07/12/2021] [Indexed: 01/08/2023]
11
Long Y, Luo J. Association Mining to Identify Microbe Drug Interactions Based on Heterogeneous Network Embedding Representation. IEEE J Biomed Health Inform 2021;25:266-275. [PMID: 32750918 DOI: 10.1109/jbhi.2020.2998906] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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