1
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Pottier P, Noble DWA, Seebacher F, Wu NC, Burke S, Lagisz M, Schwanz LE, Drobniak SM, Nakagawa S. New horizons for comparative studies and meta-analyses. Trends Ecol Evol 2024; 39:435-445. [PMID: 38216408 DOI: 10.1016/j.tree.2023.12.004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2023] [Revised: 11/29/2023] [Accepted: 12/08/2023] [Indexed: 01/14/2024]
Abstract
Comparative analyses and meta-analyses are key tools to elucidate broad biological principles, yet the two approaches often appear different in purpose. We propose an integrated approach that can generate deeper insights into ecoevolutionary processes. Marrying comparative and meta-analytic approaches will allow for (i) a more accurate investigation of drivers of biological variation, (ii) a greater ability to account for sources of non-independence in experimental data, (iii) more effective control of publication bias, and (iv) improved transparency and reproducibility. Stronger integration of meta-analytic and comparative studies can also broaden the scope from species-centric investigations to community-level responses and function-valued traits (e.g., reaction norms). We illuminate commonalities, differences, and the transformative potential of combining these methodologies for advancing ecology and evolutionary biology.
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Affiliation(s)
- Patrice Pottier
- Evolution and Ecology Centre, School of Biological, Earth, and Environmental Sciences, University of New South Wales, Sydney, New South Wales, Australia.
| | - Daniel W A Noble
- Division of Ecology and Evolution, Research School of Biology, College of Science, The Australian National University, Canberra, Australian Capital Territory, Australia
| | - Frank Seebacher
- School of Life and Environmental Sciences, University of Sydney, Sydney, New South Wales, Australia
| | - Nicholas C Wu
- Hawkesbury Institute for the Environment, Western Sydney University, New South Wales, Australia
| | - Samantha Burke
- Evolution and Ecology Centre, School of Biological, Earth, and Environmental Sciences, University of New South Wales, Sydney, New South Wales, Australia
| | - Malgorzata Lagisz
- Evolution and Ecology Centre, School of Biological, Earth, and Environmental Sciences, University of New South Wales, Sydney, New South Wales, Australia; Theoretical Sciences Visiting Program, Okinawa Institute of Science and Technology Graduate University, Onna 904-0495, Japan
| | - Lisa E Schwanz
- Evolution and Ecology Centre, School of Biological, Earth, and Environmental Sciences, University of New South Wales, Sydney, New South Wales, Australia
| | - Szymon M Drobniak
- Evolution and Ecology Centre, School of Biological, Earth, and Environmental Sciences, University of New South Wales, Sydney, New South Wales, Australia; Institute of Environmental Sciences, Jagiellonian University, Krakow, Poland
| | - Shinichi Nakagawa
- Evolution and Ecology Centre, School of Biological, Earth, and Environmental Sciences, University of New South Wales, Sydney, New South Wales, Australia; Theoretical Sciences Visiting Program, Okinawa Institute of Science and Technology Graduate University, Onna 904-0495, Japan
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2
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Sustaita D, Wulf GK, Sethuraman A. Phenotypic differentiation despite gene flow: Beak morphology, bite performance, and population genetics of Loggerhead Shrikes ( Lanius ludovicianus). Ecol Evol 2024; 14:e11079. [PMID: 38505184 PMCID: PMC10949006 DOI: 10.1002/ece3.11079] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2024] [Accepted: 02/12/2024] [Indexed: 03/21/2024] Open
Abstract
Previous studies of Loggerhead Shrikes (Laniidae: Lanius ludovicianus) in North America have indicated considerable intraspecific genetic and phenotypic differentiation, but the congruence between genetic and phenotypic differentiation remains obscure. We examined phenotypic differences in beak shape and bite force among geographic groupings across a 950 km range, from the lower Imperial Valley to the upper Central Valley of California, USA. We integrated these analyses with a population genetic analysis of six microsatellite markers to test for correspondence between phenotypic and genetic differences among geographic groups. We found significant phenotypic differentiation despite a lack of significant genetic differentiation among groups. Pairwise beak shape and bite force distances nevertheless were correlated with genetic (F ST) distances among geographic groups. Furthermore, the phenotypic and genetic distance matrices were correlated with pairwise geographic distances. Takentogether, these results suggest that phenotypic differences might be influenced by neutral processes, inbreeding (as indicated by high heterozygosity deficiencies we observed), local adaptation, and/or phenotypic plasticity.
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Affiliation(s)
- Diego Sustaita
- Department of Biological SciencesCalifornia State University San MarcosSan MarcosCaliforniaUSA
| | - Gwendalyn K. Wulf
- Department of Biological SciencesCalifornia State University San MarcosSan MarcosCaliforniaUSA
- Present address:
Beckman Center for Conservation ResearchSan Diego Zoo Wildlife AllianceEscondidoCaliforniaUSA
| | - Arun Sethuraman
- Department of Biological SciencesCalifornia State University San MarcosSan MarcosCaliforniaUSA
- Department of BiologySan Diego State UniversitySan DiegoCaliforniaUSA
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3
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Morinaga G, Wiens JJ, Moen DS. The radiation continuum and the evolution of frog diversity. Nat Commun 2023; 14:7100. [PMID: 37925440 PMCID: PMC10625520 DOI: 10.1038/s41467-023-42745-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2023] [Accepted: 10/19/2023] [Indexed: 11/06/2023] Open
Abstract
Most of life's vast diversity of species and phenotypes is often attributed to adaptive radiation. Yet its contribution to species and phenotypic diversity of a major group has not been examined. Two key questions remain unresolved. First, what proportion of clades show macroevolutionary dynamics similar to adaptive radiations? Second, what proportion of overall species richness and phenotypic diversity do these adaptive-radiation-like clades contain? We address these questions with phylogenetic and morphological data for 1226 frog species across 43 families (which represent >99% of all species). Less than half of frog families resembled adaptive radiations (with rapid diversification and morphological evolution). Yet, these adaptive-radiation-like clades encompassed ~75% of both morphological and species diversity, despite rapid rates in other clades (e.g., non-adaptive radiations). Overall, we support the importance of adaptive-radiation-like evolution for explaining diversity patterns and provide a framework for characterizing macroevolutionary dynamics and diversity patterns in other groups.
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Affiliation(s)
- Gen Morinaga
- Department of Integrative Biology, Oklahoma State University, Stillwater, OK, 74078, USA
- Faculty of Veterinary Medicine, University of Calgary, Calgary, AB, T2N 4N1, Canada
| | - John J Wiens
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, 85721, USA
| | - Daniel S Moen
- Department of Integrative Biology, Oklahoma State University, Stillwater, OK, 74078, USA.
- Department of Evolution, Ecology, and Organismal Biology, University of California, Riverside, CA, 92521, USA.
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4
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Beichman AC, Robinson J, Lin M, Moreno-Estrada A, Nigenda-Morales S, Harris K. Evolution of the Mutation Spectrum Across a Mammalian Phylogeny. Mol Biol Evol 2023; 40:msad213. [PMID: 37770035 PMCID: PMC10566577 DOI: 10.1093/molbev/msad213] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2023] [Revised: 08/21/2023] [Accepted: 09/19/2023] [Indexed: 10/03/2023] Open
Abstract
Although evolutionary biologists have long theorized that variation in DNA repair efficacy might explain some of the diversity of lifespan and cancer incidence across species, we have little data on the variability of normal germline mutagenesis outside of humans. Here, we shed light on the spectrum and etiology of mutagenesis across mammals by quantifying mutational sequence context biases using polymorphism data from thirteen species of mice, apes, bears, wolves, and cetaceans. After normalizing the mutation spectrum for reference genome accessibility and k-mer content, we use the Mantel test to deduce that mutation spectrum divergence is highly correlated with genetic divergence between species, whereas life history traits like reproductive age are weaker predictors of mutation spectrum divergence. Potential bioinformatic confounders are only weakly related to a small set of mutation spectrum features. We find that clock-like mutational signatures previously inferred from human cancers cannot explain the phylogenetic signal exhibited by the mammalian mutation spectrum, despite the ability of these signatures to fit each species' 3-mer spectrum with high cosine similarity. In contrast, parental aging signatures inferred from human de novo mutation data appear to explain much of the 1-mer spectrum's phylogenetic signal in combination with a novel mutational signature. We posit that future models purporting to explain the etiology of mammalian mutagenesis need to capture the fact that more closely related species have more similar mutation spectra; a model that fits each marginal spectrum with high cosine similarity is not guaranteed to capture this hierarchy of mutation spectrum variation among species.
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Affiliation(s)
- Annabel C Beichman
- Department of Genome Sciences, University of Washington, Seattle, WA, USA
| | - Jacqueline Robinson
- Institute for Human Genetics, University of California, San Francisco, CA, USA
| | - Meixi Lin
- Department of Plant Biology, Carnegie Institution for Science, Stanford, CA, USA
| | - Andrés Moreno-Estrada
- National Laboratory of Genomics for Biodiversity, Advanced Genomics Unit (UGA-LANGEBIO), CINVESTAV, Irapuato, Mexico
| | - Sergio Nigenda-Morales
- Department of Biological Sciences, California State University, San Marcos, San Marcos, CA, USA
| | - Kelley Harris
- Department of Genome Sciences, University of Washington, Seattle, WA, USA
- Herbold Computational Biology Program, Fred Hutchinson Cancer Center, Seattle, WA, USA
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5
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Roberts-Hugghis AS, Burress ED, Lam B, Wainwright PC. The cichlid pharyngeal jaw novelty enhances evolutionary integration in the feeding apparatus. Evolution 2023; 77:1917-1929. [PMID: 37326103 DOI: 10.1093/evolut/qpad109] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2023] [Accepted: 06/14/2023] [Indexed: 06/17/2023]
Abstract
The modified pharyngeal jaw system of cichlid fishes is widely viewed as a key innovation that substantially facilitated the evolutionary exuberance of this iconic evolutionary radiation. We conduct comparative phylogenetic analyses of integration, disparity, and rate of evolution among feeding-related, skeletal structures in Neotropical cichlids and North American centrarchids, which lack the specialized pharyngeal jaw. Contrasting evolutionary patterns in these two continental radiations, we test a classic decoupling hypothesis. Specifically, we ask whether the modified pharyngeal jaw in cichlids resulted in enhanced evolutionary independence of the oral and pharyngeal jaws, leading to increased diversity of trophic structures. Contrary to this prediction, we find significantly stronger evolutionary integration between the oral and pharyngeal jaws in cichlids compared to centrarchids, although the two groups do not differ in patterns of integration within each jaw system. Further, though we find no significant differences in disparity, centrarchids show faster rates of morphological evolution. Our results suggest that the modified pharyngeal jaw resulted in less evolutionary independence and slower rates of evolution within the feeding system. Thus, we raise the possibility that the cichlid novelty enhances feeding performance, but does not prompt increased morphological diversification within the feeding apparatus, as has long been thought.
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Affiliation(s)
| | - Edward D Burress
- Department of Biological Sciences, University of Alabama, Tuscaloosa, AL, United States
| | - Brian Lam
- Department of Evolution and Ecology, University of California-Davis, Davis, CA, United States
| | - Peter C Wainwright
- Department of Evolution and Ecology, University of California-Davis, Davis, CA, United States
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6
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Beichman AC, Robinson J, Lin M, Moreno-Estrada A, Nigenda-Morales S, Harris K. "Evolution of the mutation spectrum across a mammalian phylogeny". BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.05.31.543114. [PMID: 37398383 PMCID: PMC10312511 DOI: 10.1101/2023.05.31.543114] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/04/2023]
Abstract
Little is known about how the spectrum and etiology of germline mutagenesis might vary among mammalian species. To shed light on this mystery, we quantify variation in mutational sequence context biases using polymorphism data from thirteen species of mice, apes, bears, wolves, and cetaceans. After normalizing the mutation spectrum for reference genome accessibility and k -mer content, we use the Mantel test to deduce that mutation spectrum divergence is highly correlated with genetic divergence between species, whereas life history traits like reproductive age are weaker predictors of mutation spectrum divergence. Potential bioinformatic confounders are only weakly related to a small set of mutation spectrum features. We find that clocklike mutational signatures previously inferred from human cancers cannot explain the phylogenetic signal exhibited by the mammalian mutation spectrum, despite the ability of these clocklike signatures to fit each species' 3-mer spectrum with high cosine similarity. In contrast, parental aging signatures inferred from human de novo mutation data appear to explain much of the mutation spectrum's phylogenetic signal when fit to non-context-dependent mutation spectrum data in combination with a novel mutational signature. We posit that future models purporting to explain the etiology of mammalian mutagenesis need to capture the fact that more closely related species have more similar mutation spectra; a model that fits each marginal spectrum with high cosine similarity is not guaranteed to capture this hierarchy of mutation spectrum variation among species.
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Affiliation(s)
| | - Jacqueline Robinson
- Institute for Human Genetics, University of California, San Francisco, San Francisco, CA
| | - Meixi Lin
- Department of Plant Biology, Carnegie Institution for Science, Stanford, CA
| | - Andrés Moreno-Estrada
- National Laboratory of Genomics for Biodiversity, Advanced Genomics Unit (UGA-LANGEBIO), CINVESTAV, Irapuato, Mexico
| | - Sergio Nigenda-Morales
- Department of Biological Sciences, California State University, San Marcos, San Marcos CA
| | - Kelley Harris
- Department of Genome Sciences, University of Washington, Seattle WA
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7
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Miller CV, Pittman M, Wang X, Zheng X, Bright JA. Quantitative investigation of pengornithid enantiornithine diet reveals macrocarnivorous ecology evolved in birds by Early Cretaceous. iScience 2023; 26:106211. [PMID: 36923002 PMCID: PMC10009206 DOI: 10.1016/j.isci.2023.106211] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2022] [Revised: 01/12/2023] [Accepted: 02/13/2023] [Indexed: 02/18/2023] Open
Abstract
The diet of Mesozoic birds is poorly known, limiting evolutionary understanding of birds' roles in modern ecosystems. Pengornithidae is one of the best understood families of Mesozoic birds, hypothesized to eat insects or only small amounts of meat. We investigate these hypotheses with four lines of evidence: estimated body mass, claw traditional morphometrics, jaw mechanical advantage, and jaw finite element analysis. Owing to limited data, the diets of Eopengornis and Chiappeavis remain obscure. Pengornis, Parapengornis, and Yuanchuavis show adaptations for vertebrate carnivory. Pengornis also has talons similar to living raptorial birds like caracaras that capture and kill large prey, which represents the earliest known adaptation for macrocarnivory in a bird. This supports the appearance of this ecology ∼35 million years earlier than previously thought. These findings greatly increase the niche breadth known for Early Cretaceous birds, and shift the prevailing view that Mesozoic birds mainly occupied low trophic levels.
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Affiliation(s)
- Case Vincent Miller
- Department of Earth Sciences, the University of Hong Kong, Pokfulam, Hong Kong SAR, China
| | - Michael Pittman
- School of Life Sciences, the Chinese University of Hong Kong, Shatin, Hong Kong SAR, China
| | - Xiaoli Wang
- Institute of Geology and Paleontology, Linyi University, Linyi, Shandong 276005, China.,Shandong Tianyu Museum of Nature, Pingyi, Shandong 273300, China
| | - Xiaoting Zheng
- Institute of Geology and Paleontology, Linyi University, Linyi, Shandong 276005, China.,Shandong Tianyu Museum of Nature, Pingyi, Shandong 273300, China
| | - Jen A Bright
- Department of Biological and Marine Sciences, University of Hull, Hull HU6 7RX, UK
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8
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Hedrick BP. Dots on a screen: The past, present, and future of morphometrics in the study of nonavian dinosaurs. Anat Rec (Hoboken) 2023. [PMID: 36922704 DOI: 10.1002/ar.25183] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2022] [Revised: 10/28/2022] [Accepted: 02/12/2023] [Indexed: 03/18/2023]
Abstract
Using morphometrics to study nonavian dinosaur fossils is a practice that predates the origin of the word "dinosaur." By the 1970s, linear morphometrics had become established as a valuable tool for analyzing intra- and interspecific variation in nonavian dinosaurs. With the advent of more recent techniques such as geometric morphometrics and more advanced statistical approaches, morphometric analyses of nonavian dinosaurs have proliferated, granting unprecedented insight into many aspects of their biology and evolution. I outline the past, present, and future of morphometrics as applied to the study of nonavian dinosaurs zeroing in on five aspects of nonavian dinosaur paleobiology where morphometrics has been widely utilized to advance our knowledge: systematics, sexual dimorphism, locomotion, macroevolution, and trackways. Morphometric methods are especially susceptible to taphonomic distortion. As such, the impact of taphonomic distortion on original fossil shape is discussed as are current and future methods for quantifying and accounting for distortion with the goal of reducing the taphonomic noise to biological signal ratio. Finally, the future of morphometrics in nonavian dinosaur paleobiology is discussed as paleobiologists move into a "virtual paleobiology" framework, whereby digital renditions of fossils are captured via methods such as photogrammetry and computed tomography. These primary data form the basis for three-dimensional (3D) geometric morphometric analyses along with a slew of other forms of analyses. These 3D specimen data form part of the extended specimen and help to democratize paleobiology, unlocking the specimen from the physical museum and making the specimen available to researchers across the world.
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Affiliation(s)
- Brandon P Hedrick
- Department of Biomedical Sciences, College of Veterinary Medicine, Cornell University, Ithaca, New York, USA
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9
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Mendes R, Nunes VL, Marabuto E, Costa GJ, Silva SE, Paulo OS, Simões PC. Testing drivers of acoustic divergence in cicadas (Cicadidae: Tettigettalna). J Evol Biol 2023; 36:461-479. [PMID: 36514855 PMCID: PMC10107868 DOI: 10.1111/jeb.14133] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2021] [Revised: 10/20/2022] [Accepted: 10/24/2022] [Indexed: 12/15/2022]
Abstract
Divergence in acoustic signals may have a crucial role in the speciation process of animals that rely on sound for intra-specific recognition and mate attraction. The acoustic adaptation hypothesis (AAH) postulates that signals should diverge according to the physical properties of the signalling environment. To be efficient, signals should maximize transmission and decrease degradation. To test which drivers of divergence exert the most influence in a speciose group of insects, we used a phylogenetic approach to the evolution of acoustic signals in the cicada genus Tettigettalna, investigating the relationship between acoustic traits (and their mode of evolution) and body size, climate and micro-/macro-habitat usage. Different traits showed different evolutionary paths. While acoustic divergence was generally independent of phylogenetic history, some temporal variables' divergence was associated with genetic drift. We found support for ecological adaptation at the temporal but not the spectral level. Temporal patterns are correlated with micro- and macro-habitat usage and temperature stochasticity in ways that run against the AAH predictions, degrading signals more easily. These traits are likely to have evolved as an anti-predator strategy in conspicuous environments and low-density populations. Our results support a role of ecological selection, not excluding a likely role of sexual selection in the evolution of Tettigettalna calling songs, which should be further investigated in an integrative approach.
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Affiliation(s)
- Raquel Mendes
- Centre for Ecology, Evolution and Environmental Changes (cE3c), Departamento de Biologia Animal, Faculdade de Ciências, Universidade de Lisboa, Campo Grande, Lisboa, Portugal
| | - Vera L Nunes
- Centre for Ecology, Evolution and Environmental Changes (cE3c), Departamento de Biologia Animal, Faculdade de Ciências, Universidade de Lisboa, Campo Grande, Lisboa, Portugal
| | - Eduardo Marabuto
- Centre for Ecology, Evolution and Environmental Changes (cE3c), Departamento de Biologia Animal, Faculdade de Ciências, Universidade de Lisboa, Campo Grande, Lisboa, Portugal
| | - Gonçalo J Costa
- Centre for Ecology, Evolution and Environmental Changes (cE3c), Departamento de Biologia Animal, Faculdade de Ciências, Universidade de Lisboa, Campo Grande, Lisboa, Portugal
| | - Sara E Silva
- Centre for Ecology, Evolution and Environmental Changes (cE3c), Departamento de Biologia Animal, Faculdade de Ciências, Universidade de Lisboa, Campo Grande, Lisboa, Portugal
| | - Octávio S Paulo
- Centre for Ecology, Evolution and Environmental Changes (cE3c), Departamento de Biologia Animal, Faculdade de Ciências, Universidade de Lisboa, Campo Grande, Lisboa, Portugal
| | - Paula C Simões
- Centre for Ecology, Evolution and Environmental Changes (cE3c), Departamento de Biologia Animal, Faculdade de Ciências, Universidade de Lisboa, Campo Grande, Lisboa, Portugal
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10
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Martínez-Domínguez L, Nicolalde-Morejón F, Vergara-Silva F, Guevara R, Gernandt DS, Stevenson DW. Species delimitation in Ceratozamia (Zamiaceae) from Southwestern Mexico, in light of reproductive and climatic diversification. ORG DIVERS EVOL 2022. [DOI: 10.1007/s13127-022-00598-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
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11
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Conaway MA, Adams DC. An effect size for comparing the strength of morphological integration across studies. Evolution 2022; 76:2244-2259. [PMID: 35971251 DOI: 10.1111/evo.14595] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2022] [Accepted: 06/16/2022] [Indexed: 01/22/2023]
Abstract
Understanding how and why phenotypic traits covary is a major interest in evolutionary biology. Biologists have long sought to characterize the extent of morphological integration in organisms, but comparing levels of integration for a set of traits across taxa has been hampered by the lack of a reliable summary measure and testing procedure. Here, we propose a standardized effect size for this purpose, calculated from the relative eigenvalue variance, V r e l $V_{rel}$ . First, we evaluate several eigenvalue dispersion indices under various conditions, and show that only V r e l $V_{rel}$ remains stable across samples size and the number of variables. We then demonstrate that V r e l $V_{rel}$ accurately characterizes input patterns of covariation, so long as redundant dimensions are excluded from the calculations. However, we also show that the variance of the sampling distribution of V r e l $V_{rel}$ depends on input levels of trait covariation, making V r e l $V_{rel}$ unsuitable for direct comparisons. As a solution, we propose transforming V r e l $V_{rel}$ to a standardized effect size (Z-score) for representing the magnitude of integration for a set of traits. We also propose a two-sample test for comparing the strength of integration between taxa, and show that this test displays appropriate statistical properties. We provide software for implementing the procedure, and an empirical example illustrates its use.
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Affiliation(s)
- Mark A Conaway
- Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa, USA
| | - Dean C Adams
- Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa, USA
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12
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Adams DC, Collyer ML. Consilience of methods for phylogenetic analysis of variance. Evolution 2022; 76:1406-1419. [PMID: 35522593 PMCID: PMC9544334 DOI: 10.1111/evo.14512] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2021] [Accepted: 03/22/2022] [Indexed: 01/21/2023]
Abstract
Simulation-based and permutation-based inferential methods are commonplace in phylogenetic comparative methods, especially as evolutionary data have become more complex and parametric methods more limited for their analysis. Both approaches simulate many random outcomes from a null model to empirically generate sampling distributions of statistics. Although simulation-based and permutation-based methods seem commensurate in purpose, results from analysis of variance (ANOVA) based on the distributions of random F-statistics produced by these methods can be quite different in practice. Differences could be from either the null-model process that generates variation across many simulations or random permutations of the data, or different estimation methods for linear model coefficients and statistics. Unfortunately, because the null-model process and coefficient estimation are intrinsically linked in phylogenetic ANOVA methods, the precise reason for methodological differences has not been fully considered. Here we show that the null-model processes of phylogenetic simulation and randomizing residuals in a permutation procedure are indeed commensurate, and that both also produce results consistent with parametric ANOVA, for cases where parametric ANOVA is possible. We also provide results that caution against using ordinary least-squares estimation along with phylogenetic simulation; a typical phylogenetic ANOVA implementation.
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Affiliation(s)
- Dean C. Adams
- Department of Ecology, Evolution, and Organismal BiologyIowa State UniversityAmesIowaUSA
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13
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Ruiz-Monachesi MR, Abdala CS, Cruz FB. Allometry and morphological integration shape the chemical detection system in Liolaemus lizards (Squamata, Iguania). ZOOL ANZ 2022. [DOI: 10.1016/j.jcz.2022.06.005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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14
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Edwards DL, Avila LJ, Martinez L, Sites JW, Morando M. Environmental correlates of phenotypic evolution in ecologically diverse
Liolaemus
lizards. Ecol Evol 2022; 12:e9009. [PMID: 35784059 PMCID: PMC9201750 DOI: 10.1002/ece3.9009] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2022] [Accepted: 05/02/2022] [Indexed: 01/02/2023] Open
Abstract
Evolutionary correlations between phenotypic and environmental traits characterize adaptive radiations. However, the lizard genus Liolaemus, one of the most ecologically diverse terrestrial vertebrate radiations on earth, has so far shown limited or mixed evidence of adaptive diversification in phenotype. Restricted use of comprehensive environmental data, incomplete taxonomic representation and not considering phylogenetic uncertainty may have led to contradictory evidence. We compiled a 26‐taxon dataset for the Liolaemus gracilis species group, representing much of the ecological diversity represented within Liolaemus and used environmental data to characterize how environments occupied by species' relate to phenotypic evolution. Our analyses, explicitly accounting for phylogenetic uncertainty, suggest diversification in phenotypic traits toward the present, with body shape evolution rapidly evolving in this group. Body shape evolution correlates with the occupation of different structural habitats indicated by vegetation axes suggesting species have adapted for maximal locomotory performance in these habitats. Our results also imply that the effects of phylogenetic uncertainty and model misspecification may be more extensive on univariate, relative to multivariate analyses of evolutionary correlations, which is an important consideration in analyzing data from rapidly radiating adaptive radiations.
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Affiliation(s)
- Danielle L. Edwards
- The Department of Life & Environmental Sciences University of California Merced California USA
| | - Luciano J. Avila
- Instituto Patagónico para el Estudio de los Ecosistemas Continentales (IPEEC‐CONICET) Puerto Madryn Argentina
| | - Lorena Martinez
- Instituto Patagónico para el Estudio de los Ecosistemas Continentales (IPEEC‐CONICET) Puerto Madryn Argentina
- Vigo Spain
| | - Jack W. Sites
- Department of Biology and M.L. Bean Life Science Museum Brigham Young University (BYU) Provo Utah USA
- Trenton Kentucky USA
| | - Mariana Morando
- Instituto Patagónico para el Estudio de los Ecosistemas Continentales (IPEEC‐CONICET) Puerto Madryn Argentina
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15
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Zozaya SM, Teasdale LC, Moritz C, Higgie M, Hoskin CJ. Composition of a chemical signalling trait varies with phylogeny and precipitation across an Australian lizard radiation. J Evol Biol 2022; 35:919-933. [PMID: 35665557 DOI: 10.1111/jeb.14031] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2022] [Revised: 04/18/2022] [Accepted: 05/06/2022] [Indexed: 12/01/2022]
Abstract
The environment presents challenges to the transmission and detection of animal signalling systems, resulting in selective pressures that can drive signal divergence amongst populations in disparate environments. For chemical signals, climate is a potentially important selective force because factors such as temperature and moisture influence the persistence and detection of chemicals. We investigated an Australian lizard radiation (Heteronotia) to explore relationships between a sexually dimorphic chemical signalling trait (epidermal pore secretions) and two key climate variables: temperature and precipitation. We reconstructed the phylogeny of Heteronotia with exon capture phylogenomics, estimated phylogenetic signal in amongst-lineage chemical variation and assessed how chemical composition relates to temperature and precipitation using multivariate phylogenetic regressions. High estimates of phylogenetic signal indicate that the composition of epidermal pore secretions varies amongst lineages in a manner consistent with Brownian motion, although there are deviations to this, with stark divergences coinciding with two phylogenetic splits. Accounting for phylogenetic non-independence, we found that amongst-lineage chemical variation is associated with geographic variation in precipitation but not temperature. This contrasts somewhat with previous lizard studies, which have generally found an association between temperature and chemical composition. Our results suggest that geographic variation in precipitation can affect the evolution of chemical signalling traits, possibly influencing patterns of divergence amongst lineages and species.
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Affiliation(s)
- Stephen M Zozaya
- Research School of Biology, Australian National University, Acton, Australian Capital Territory, Australia.,College of Science and Engineering, James Cook University, Townsville, Queensland, Australia
| | - Luisa C Teasdale
- Research School of Biology, Australian National University, Acton, Australian Capital Territory, Australia.,Department of Molecular Biology, Max Planck Institute for Developmental Biology, Tübingen, Germany
| | - Craig Moritz
- Research School of Biology, Australian National University, Acton, Australian Capital Territory, Australia
| | - Megan Higgie
- College of Science and Engineering, James Cook University, Townsville, Queensland, Australia
| | - Conrad J Hoskin
- College of Science and Engineering, James Cook University, Townsville, Queensland, Australia
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16
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Friedman ST, Muñoz MM. The effect of thermally robust ballistic mechanisms on climatic niche in salamanders. Integr Org Biol 2022; 4:obac020. [PMID: 35975191 PMCID: PMC9375770 DOI: 10.1093/iob/obac020] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2022] [Revised: 05/04/2022] [Accepted: 05/18/2022] [Indexed: 11/12/2022] Open
Abstract
Many organismal functions are temperature-dependent due to the contractile properties of muscle. Spring-based mechanisms offer a thermally robust alternative to temperature-sensitive muscular movements and may correspondingly expand a species’ climatic niche by partially decoupling the relationship between temperature and performance. Using the ballistic tongues of salamanders as a case study, we explore whether the thermal robustness of elastic feeding mechanisms increases climatic niche breadth, expands geographic range size, and alters the dynamics of niche evolution. Combining phylogenetic comparative methods with global climate data, we find that the feeding mechanism imparts no discernable signal on either climatic niche properties or the evolutionary dynamics of most climatic niche parameters. Although biomechanical innovation in feeding influences many features of whole-organism performance, it does not appear to drive macro-climatic niche evolution in salamanders. We recommend that future work incorporate micro-scale environmental data to better capture the conditions that salamanders experience, and we discuss a few outstanding questions in this regard. Overall, this study lays the groundwork for an investigation into the evolutionary relationships between climatic niche and biomechanical traits in ectotherms.
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Affiliation(s)
- Sarah T Friedman
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, Connecticut 06511
| | - Martha M Muñoz
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, Connecticut 06511
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17
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Jia J, Li G, Gao KQ. Palatal morphology predicts the paleobiology of early salamanders. eLife 2022; 11:76864. [PMID: 35575462 PMCID: PMC9170251 DOI: 10.7554/elife.76864] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2022] [Accepted: 05/15/2022] [Indexed: 11/13/2022] Open
Abstract
Ecological preferences and life history strategies have enormous impacts on the evolution and phenotypic diversity of salamanders, but the yet established reliable ecological indicators from bony skeletons hinder investigations into the paleobiology of early salamanders. Here, we statistically demonstrate by using time-calibrated cladograms and geometric morphometric analysis on 71 specimens in 36 species, that both the shape of the palate and many non-shape covariates particularly associated with vomerine teeth are ecologically informative in early stem- and basal crown-group salamanders. Disparity patterns within the morphospace of the palate in ecological preferences, life history strategies, and taxonomic affiliations were analyzed in detail, and evolutionary rates and ancestral states of the palate were reconstructed. Our results show that the palate is heavily impacted by convergence constrained by feeding mechanisms and also exhibits clear stepwise evolutionary patterns with alternative phenotypic configurations to cope with similar functional demand. Salamanders are diversified ecologically before the Middle Jurassic and achieved all their present ecological preferences in the Early Cretaceous. Our results reveal that the last common ancestor of all salamanders share with other modern amphibians a unified biphasic ecological preference, and metamorphosis is significant in the expansion of ecomorphospace of the palate in early salamanders.
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Affiliation(s)
- Jia Jia
- Department of Comparative Biology and Experimental Medicine, University of Calgary, Calgary, Canada
| | - Guangzhao Li
- Department of Microbiology, Immunology and Tropical Medicine, George Washington University, Washington, United States
| | - Ke-Qin Gao
- School of Earth and Space Sciences, Peking University, Beijing, China
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18
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Miller CV, Pittman M, Wang X, Zheng X, Bright JA. Diet of Mesozoic toothed birds (Longipterygidae) inferred from quantitative analysis of extant avian diet proxies. BMC Biol 2022; 20:101. [PMID: 35550084 PMCID: PMC9097364 DOI: 10.1186/s12915-022-01294-3] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2021] [Accepted: 04/12/2022] [Indexed: 11/10/2022] Open
Abstract
Background Birds are key indicator species in extant ecosystems, and thus we would expect extinct birds to provide insights into the nature of ancient ecosystems. However, many aspects of extinct bird ecology, particularly their diet, remain obscure. One group of particular interest is the bizarre toothed and long-snouted longipterygid birds. Longipterygidae is the most well-understood family of enantiornithine birds, the dominant birds of the Cretaceous period. However, as with most Mesozoic birds, their diet remains entirely speculative. Results To improve our understanding of longipterygids, we investigated four proxies in extant birds to determine diagnostic traits for birds with a given diet: body mass, claw morphometrics, jaw mechanical advantage, and jaw strength via finite element analysis. Body mass of birds tended to correspond to the size of their main food source, with both carnivores and herbivores splitting into two subsets by mass: invertivores or vertivores for carnivores, and granivores + nectarivores or folivores + frugivores for herbivores. Using claw morphometrics, we successfully distinguished ground birds, non-raptorial perching birds, and raptorial birds from one another. We were unable to replicate past results isolating subtypes of raptorial behaviour. Mechanical advantage was able to distinguish herbivorous diets with particularly high values of functional indices, and so is useful for identifying these specific diets in fossil taxa, but overall did a poor job of reflecting diet. Finite element analysis effectively separated birds with hard and/or tough diets from those eating foods which are neither, though could not distinguish hard and tough diets from one another. We reconstructed each of these proxies in longipterygids as well, and after synthesising the four lines of evidence, we find all members of the family but Shengjingornis (whose diet remains inconclusive) most likely to be invertivores or generalist feeders, with raptorial behaviour likely in Longipteryx and Rapaxavis. Conclusions This study provides a 20% increase in quantitatively supported fossil bird diets, triples the number of diets reconstructed in enantiornithine species, and serves as an important first step in quantitatively investigating the origins of the trophic diversity of living birds. These findings are consistent with past hypotheses that Mesozoic birds occupied low trophic levels. Supplementary Information The online version contains supplementary material available at 10.1186/s12915-022-01294-3.
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Affiliation(s)
- Case Vincent Miller
- Department of Earth Sciences, The University of Hong Kong, Pokfulam, Hong Kong SAR, China.
| | - Michael Pittman
- School of Life Sciences, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong SAR, China. .,Department of Earth Sciences, University College London, Gower Street, London, WC1E 6BT, UK.
| | - Xiaoli Wang
- Institute of Geology and Paleontology, Linyi University, Linyi City, Shandong, 276005, China.,Shandong Tianyu Museum of Nature, Pingyi, Shandong, 273300, China
| | - Xiaoting Zheng
- Institute of Geology and Paleontology, Linyi University, Linyi City, Shandong, 276005, China.,Shandong Tianyu Museum of Nature, Pingyi, Shandong, 273300, China
| | - Jen A Bright
- Department of Biological and Marine Sciences, University of Hull, Hull, HU6 7RX, UK
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19
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Shimoji H, Dobata S. The build-up of dominance hierarchies in eusocial insects. Philos Trans R Soc Lond B Biol Sci 2022; 377:20200437. [PMID: 35000446 PMCID: PMC8743887 DOI: 10.1098/rstb.2020.0437] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2021] [Accepted: 11/08/2021] [Indexed: 12/11/2022] Open
Abstract
Reproductive division of labour is a hallmark of eusocial insects. However, its stability can often be hampered by the potential for reproduction by otherwise sterile nest-mates. Dominance hierarchy has a crucial role in some species in regulating which individuals reproduce. Compared with those in vertebrates, the dominance hierarchies in eusocial insects tend to involve many more individuals, and should require additional selective forces unique to them. Here, we provide an overview of a series of studies on dominance hierarchies in eusocial insects. Although reported from diverse eusocial taxa, dominance hierarchies have been extensively studied in paper wasps and ponerine ants. Starting from molecular physiological attributes of individuals, we describe how the emergence of dominance hierarchies can be understood as a kind of self-organizing process through individual memory and local behavioural interactions. The resulting global structures can be captured by using network analyses. Lastly, we argue the adaptive significance of dominance hierarchies from the standpoint of sterile subordinates. Kin selection, underpinned by relatedness between nest-mates, is key to the subordinates' acceptance of their positions in the hierarchies. This article is part of the theme issue 'The centennial of the pecking order: current state and future prospects for the study of dominance hierarchies'.
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Affiliation(s)
- Hiroyuki Shimoji
- School of Biological and Environmental Sciences, Kwansei Gakuin University, Sanda, Hyogo 669-1337, Japan
| | - Shigeto Dobata
- Department of General Systems Studies, Graduate School of Arts and Sciences, The University of Tokyo, Komaba, Meguro, Tokyo 153-8902, Japan
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20
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Watanabe J. Detecting (non)parallel evolution in multidimensional spaces: angles, correlations and eigenanalysis. Biol Lett 2022; 18:20210638. [PMID: 35168376 PMCID: PMC8847891 DOI: 10.1098/rsbl.2021.0638] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022] Open
Abstract
Parallelism between evolutionary trajectories in a trait space is often seen as evidence for repeatability of phenotypic evolution, and angles between trajectories play a pivotal role in the analysis of parallelism. However, properties of angles in multidimensional spaces have not been widely appreciated by biologists. To remedy this situation, this study provides a brief overview on geometric and statistical aspects of angles in multidimensional spaces. Under the null hypothesis that trajectory vectors have no preferred directions (i.e. uniform distribution on hypersphere), the angle between two independent vectors is concentrated around the right angle, with a more pronounced peak in a higher-dimensional space. This probability distribution is closely related to t- and beta distributions, which can be used for testing the null hypothesis concerning a pair of trajectories. A recently proposed method with eigenanalysis of a vector correlation matrix can be connected to the test of no correlation or concentration of multiple vectors, for which simple test procedures are available in the statistical literature. Concentration of vectors can also be examined by tools of directional statistics such as the Rayleigh test. These frameworks provide biologists with baselines to make statistically justified inferences for (non)parallel evolution.
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Affiliation(s)
- Junya Watanabe
- Department of Earth Sciences, University of Cambridge, Downing Street, Cambridge CB2 3EQ, UK
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21
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Marcolin F, Cardoso GC, Bento D, Reino L, Santana J. Body size and sexual selection shaped the evolution of parrot calls. J Evol Biol 2022; 35:439-450. [PMID: 35147264 DOI: 10.1111/jeb.13986] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2021] [Revised: 01/26/2022] [Accepted: 02/05/2022] [Indexed: 11/30/2022]
Abstract
Morphology, habitat and various selective pressures (e.g., social and sexual selection) can influence the evolution of acoustic signals, but the relative importance of their effects is not well understood. The order Psittaciformes (parrots, sensu lato) is a large clade of very vocal and often gregarious species for which large-scale comparative studies of vocalizations are lacking. We measured acoustic traits (duration, sound frequency, frequency bandwidth and sound entropy) of the predominant call type for >200 parrot species to test: (1) for associations with body size; (2) the acoustic adaptation hypothesis (predicting differences between forest and open-habitat species); (3) the social complexity hypothesis (predicting more complex calls in gregarious species); and (4) influences of sexual selection (predicting correlated evolution with colour ornamentation). Larger species had on average longer calls, lower sound frequency and wider frequency bandwidth. These associations with body size are all predicted by physical principles of sound production. We found no evidence for the acoustic adaptation and social complexity hypotheses, but perhaps social complexity is associated with vocal traits not studied here, such as call repertoire sizes. More sexually dichromatic species had on average simpler calls (shorter, with lower entropy and narrower frequency bandwidth) indicating an influence of sexual selection, namely an evolutionary negative correlation between colour ornamentation and elaborate acoustic signals, as predicted by the transference hypothesis. Our study is the first large-scale attempt at understanding acoustic diversity across the Psittaciformes, and indicates that body size and sexual selection influenced the evolution of species differences in vocal signals.
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Affiliation(s)
- Fabio Marcolin
- Centro de Estudos Florestais, Instituto Superior de Agronomia, Universidade de Lisboa, Tapada da Ajuda, P-1349-017, Lisboa, Portugal
| | - Gonçalo C Cardoso
- CIBIO/InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto, Campus Agrário de Vairão, 4485-661, Vairão, Portugal
| | - Daniel Bento
- CIBIO/InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto, Campus Agrário de Vairão, 4485-661, Vairão, Portugal.,CIBIO/InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Instituto Superior de Agronomia, Universidade de Lisboa, Tapada da Ajuda, 1349-017, Lisboa, Portugal
| | - Luís Reino
- CIBIO/InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto, Campus Agrário de Vairão, 4485-661, Vairão, Portugal.,CIBIO/InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Instituto Superior de Agronomia, Universidade de Lisboa, Tapada da Ajuda, 1349-017, Lisboa, Portugal
| | - Joana Santana
- CIBIO/InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto, Campus Agrário de Vairão, 4485-661, Vairão, Portugal.,CIBIO/InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Instituto Superior de Agronomia, Universidade de Lisboa, Tapada da Ajuda, 1349-017, Lisboa, Portugal
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22
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De Mendoza RS, Gómez RO. Ecomorphology of the tarsometatarsus of waterfowl (Anseriformes) based on geometric morphometrics and its application to fossils. Anat Rec (Hoboken) 2022; 305:3243-3253. [PMID: 35132811 DOI: 10.1002/ar.24891] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2021] [Revised: 01/24/2022] [Accepted: 01/26/2022] [Indexed: 11/08/2022]
Abstract
Anseriformes is a diverse group of birds that comprises screamers, the Magpie Goose, and swans ducks and geese, with a relatively rich fossil record. Waterfowl live in close relation to water bodies, but show a diversity of locomotory habits, being typically categorized as walkers, dabblers, and divers. Owing to its functional significance and high preservation potential, the tarsometatarsus has been considered to be a "key" element upon which to base ecomorphological inferences in fossil waterfowl. For instance, based on features of the tarsometatarsus the Miocene flightless duck Cayaoa bruneti and the Oligocene-Miocene large waterfowl Paranyroca have been inferred as divers. Herein, we use a geometric morphometric approach and comparative methods to assess the phylogenetic and ecomorphological signals in the shape and size of waterfowl tarsometatarsi in relation to their locomotory habits. We also apply phylogenetic flexible discriminant analysis (pFDA) to test the inferred diving habits in the extinct waterfowl Cayaoa and Paranyroca. Extant waterfowl species are largely distributed according to their locomotory habit along the main axis of variation in the shape space, a pattern mirrored by the phylogenetic generalized least squares model, which shows that a third of the shape variation is significantly explained by the habit. The pFDA reclassifies correctly almost all extant species and classified with high posterior probabilities the fossil Cayaoa and Paranyroca as a diver and as a dabbler, respectively. Our quantitative multivariate approach confirms the tarsometatarsus as a useful source of data upon which reliably assesses locomotory habits of fossil waterfowl.
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Affiliation(s)
- Ricardo Santiago De Mendoza
- Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Buenos Aires, Argentina.,Laboratorio de Histología y Embriología Descriptiva, Experimental y Comparada (LHYEDEC). Facultad de Ciencias Veterinarias, Universidad Nacional de La Plata, Buenos Aires, Argentina
| | - Raúl Orencio Gómez
- Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Buenos Aires, Argentina.,Departamento de Biodiversidad y Biología Experimental, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Ciudad Universitaria, Buenos Aires, Argentina
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23
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Holmes J, Sustaita D, Hertel F. Geometric Morphometric Analysis of the Humerus in New and Old World Vultures. J Morphol 2022; 283:379-394. [PMID: 35038183 DOI: 10.1002/jmor.21449] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2020] [Revised: 12/30/2021] [Accepted: 01/12/2022] [Indexed: 11/08/2022]
Abstract
The vulture guild is composed of two distinct groups, Old and New World, that provide a unique insight into how morphology varies among convergent species. All vultures are considered to be large birds of prey that utilize a style of flight called thermal soaring to search and feed primarily on carrion. Even though this flight style is exhibited among all 23 species, slight variations in their skeletal morphology may relate to their differences in ecology. We hypothesized that vulture humeral morphology varies in relation to these organisms' habitat, average body mass, courtship displays, and migratory behavior. To address this hypothesis, we used three-dimensional geometric morphometrics to measure the overall shape differences of vulture humeri. Humeral morphology was found to vary most by habitat association and migratory tendency. The humeri of vultures that inhabit forested areas exhibit features that suggest increased flapping flight compared to those in open and mountainous regions. Migratory species were found to possess more robust features near the glenohumeral joint. We found these (and other features) have some utility for predicting ecology and behavior, but we suggest that further investigation into skeletal and muscular wing elements may reveal greater understanding of the habits of extinct vulture species. This article is protected by copyright. All rights reserved.
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Affiliation(s)
- Jacob Holmes
- Department of Biology, California State University, Northridge, Northridge, California
| | - Diego Sustaita
- Department of Biological Sciences, California State University, San Marcos, San Marcos, California
| | - Fritz Hertel
- Department of Biology, California State University, Northridge, Northridge, California
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24
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Wainwright DK, Karan EA, Collar DC. Evolutionary patterns of scale morphology in damselfishes (Pomacentridae). Biol J Linn Soc Lond 2021. [DOI: 10.1093/biolinnean/blab140] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
Abstract
Fish scales are bony plates embedded in the skin that vary extensively in shape across taxa. Despite a plethora of hypotheses regarding form–function relationships in scales, we know little about the ecological selective factors that shape their diversity. Here we examine evolutionary patterns of scale morphology using novel three-dimensional topography from the surfaces of 59 species of damselfishes, a prominent radiation of coral reef fishes. We find evidence that scale morphology changes with different flow environments, such that species that spend more time in open-water habitats have smoother scales. We also show that other aspects of ecology lead to highly derived scales. For example, anemonefishes show an evolutionary transition to smaller scales and smaller ctenii (scale spines). Moreover, changes in body shape, which may reflect ecological differentiation, are related to scale shape but not surface properties. We also demonstrate weak evolutionary integration among multiple aspects of scale morphology; however, scale size and shape are related, and scale morphology is correlated between different body regions. Finally, we also identify a relationship between aspects of lateral line pore morphology, such that the number of lateral line pores per scale and the size of those pores are inversely related. Overall, our study provides insights into the multidimensionality of scale evolution and improves our understanding of some of the factors that can give rise to the diversity of scales seen across fishes.
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25
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Johnston TD. The pre-Darwinian history of the comparative method, 1555-1855. HISTORY AND PHILOSOPHY OF THE LIFE SCIENCES 2021; 43:118. [PMID: 34782958 DOI: 10.1007/s40656-021-00474-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/11/2020] [Accepted: 10/22/2021] [Indexed: 06/13/2023]
Abstract
The comparative method, closely identified with Darwinian evolutionary biology, also has a long pre-Darwinian history. The method derives its scientific power from its ability to interpret comparative observations with reference to a theory of relatedness among the entities being compared (the comparates). Such scientifically powerful strong comparison is distinguished from weak comparison, which lacks such theoretical grounding. This paper examines the history of the strong comparison permitted by the comparative method from the early modern period to the threshold of the Darwinian revolution in the mid nineteenth century. It interprets the work of early pioneers such as Belon, Willis, Perrault, and Tyson from this methodological perspective, rather than focusing on their particular anatomical findings. Although these early writers made formative scientific contributions through their comparative investigations, the more theoretically grounded application of the comparative method by Geoffroy, Cuvier, and Owen was instrumental in laying the foundation for its later incorporation into Darwinian evolutionary theory.
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Affiliation(s)
- Timothy D Johnston
- Department of Psychology, University of North Carolina at Greensboro, Greensboro, NC, 27410, USA.
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26
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Mangiacotti M, Baeckens S, Scali S, Martín J, Van Damme R, Sacchi R. Evolutionary and biogeographical support for species-specific proteins in lizard chemical signals. Biol J Linn Soc Lond 2021. [DOI: 10.1093/biolinnean/blab131] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
Abstract
Abstract
The species-specific components of animal signals can facilitate species recognition and reduce the risks of mismatching and interbreeding. Nonetheless, empirical evidence for species-specific components in chemical signals is scarce and mostly limited to insect pheromones. Based on the proteinaceous femoral gland secretions of 36 lizard species (Lacertidae), we examine the species-specific component potential of proteins in lizard chemical signals. By quantitative comparison of the one-dimensional electrophoretic patterns of the protein fraction from femoral gland secretions, we first reveal that the protein composition is species specific, accounting for a large part of the observed raw variation and allowing us to discriminate species on this basis. Secondly, we find increased protein pattern divergence in sympatric, closely related species. Thirdly, lizard protein profiles show a low phylogenetic signal, a recent and steep increase in relative disparity and a high rate of evolutionary change compared with non-specifically signal traits (i.e. body size and shape). Together, these findings provide support for the species specificity of proteins in the chemical signals of a vertebrate lineage.
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Affiliation(s)
- Marco Mangiacotti
- Department of Earth and Environmental Sciences, University of Pavia, Pavia, Italy
- Museo di Storia Naturale di Milano, Milano, Italy
| | - Simon Baeckens
- Laboratory for Functional Morphology, Department of Biology, University of Antwerp, Wilrijk, Belgium
| | | | - José Martín
- Departamento de Ecología Evolutiva, Museo Nacional de Ciencias Naturales, CSIC, Madrid, Spain
| | - Raoul Van Damme
- Laboratory for Functional Morphology, Department of Biology, University of Antwerp, Wilrijk, Belgium
| | - Roberto Sacchi
- Department of Earth and Environmental Sciences, University of Pavia, Pavia, Italy
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27
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Catalano SA, Segura V, Vera Candioti F. SPASOS 1.1: a program for the inference of ancestral shape ontogenies. Cladistics 2021; 37:630-638. [PMID: 34570938 DOI: 10.1111/cla.12459] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2020] [Revised: 03/02/2021] [Accepted: 04/05/2021] [Indexed: 11/26/2022] Open
Abstract
We recently published a method to infer ancestral landmark-based shape ontogenies that takes into account the possible existence of changes in developmental timing. Here we describe SPASOS, a software to perform that analysis. SPASOS is an open-source Windows program written in C. Input data include landmark coordinates for each specimen -with the corresponding information about developmental timing- and a phylogenetic tree showing the relationships among the species sampled. As output, the program produces image files for an easy visualization of the results and data files useful for post-processing. The program incorporates an interpolating function, based on weighting moving averages, which allows analysis of data with scarce information along the ontogenetic trajectory. An empirical evaluation of this function showed its suitability to fill in incomplete ontogenetic trajectories. Finally, we present the results of a reanalysis in SPASOS of a published dataset, where changes in developmental timing were originally inferred by considering PCA scores as shape variables. Both approaches retrieved the same four largest changes in developmental timing, but differed in the ancestral shapes inferred.
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Affiliation(s)
- Santiago Andrés Catalano
- Unidad Ejecutora Lillo (Consejo Nacional de Investigaciones Científicas y Técnicas - Fundación Miguel Lillo), Miguel Lillo 251, S. M. de Tucumán, 4000, Argentina.,Facultad de Ciencias Naturales e Instituto Miguel Lillo (Universidad Nacional de Tucumán), S. M. de Tucumán, 4000, Argentina
| | - Valentina Segura
- Unidad Ejecutora Lillo (Consejo Nacional de Investigaciones Científicas y Técnicas - Fundación Miguel Lillo), Miguel Lillo 251, S. M. de Tucumán, 4000, Argentina
| | - Florencia Vera Candioti
- Unidad Ejecutora Lillo (Consejo Nacional de Investigaciones Científicas y Técnicas - Fundación Miguel Lillo), Miguel Lillo 251, S. M. de Tucumán, 4000, Argentina
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28
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Baken EK, Mellenthin LE, Adams DC. Is salamander arboreality limited by broad-scale climatic conditions? PLoS One 2021; 16:e0255393. [PMID: 34407101 PMCID: PMC8372966 DOI: 10.1371/journal.pone.0255393] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2020] [Accepted: 07/15/2021] [Indexed: 11/18/2022] Open
Abstract
Identifying the historical processes that drive microhabitat transitions across deep time is of great interest to evolutionary biologists. Morphological variation can often reveal such mechanisms, but in clades with high microhabitat diversity and no concomitant morphological specialization, the factors influencing animal transitions across microhabitats are more difficult to identify. Lungless salamanders (family: Plethodontidae) have transitioned into and out of the arboreal microhabitat many times throughout their evolutionary history without substantial morphological specialization. In this study, we explore the relationship between microhabitat use and broad-scale climatic patterns across species' ranges to test the role of climate in determining the availability of the arboreal microhabitat. Using phylogenetic comparative methods, we reveal that arboreal species live in warmer, lower elevation regions than terrestrial species. We also employ ecological niche modeling as a complementary approach, quantifying species-level pairwise comparisons of niche overlap. The results of this approach demonstrate that arboreal species on average display more niche overlap with other arboreal species than with terrestrial species after accounting for non-independence of niche model pairs caused by geographic and phylogenetic distances. Our results suggest that occupation of the arboreal microhabitat by salamanders may only be possible in sufficiently warm, low elevation conditions. More broadly, this study indicates that the impact of micro-environmental conditions on temporary microhabitat use, as demonstrated by small-scale ecological studies, may scale up dramatically to shape macroevolutionary patterns.
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Affiliation(s)
- Erica K. Baken
- Department of Science, Chatham University, Pittsburgh, Pennsylvania, United States of America
| | - Lauren E. Mellenthin
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, Connecticut, United States of America
| | - Dean C. Adams
- Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa, United States of America
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29
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Tamagnini D, Canestrelli D, Meloro C, Raia P, Maiorano L. New Avenues for Old Travellers: Phenotypic Evolutionary Trends Meet Morphodynamics, and Both Enter the Global Change Biology Era. Evol Biol 2021. [DOI: 10.1007/s11692-021-09545-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
AbstractEvolutionary trends (ETs) are traditionally defined as substantial changes in the state of traits through time produced by a persistent condition of directional evolution. ETs might also include directional responses to ecological, climatic or biological gradients and represent the primary evolutionary pattern at high taxonomic levels and over long-time scales. The absence of a well-supported operative definition of ETs blurred the definition of conceptual differences between ETs and other key concepts in evolution such as convergence, parallel evolution, and divergence. Also, it prevented the formulation of modern guidelines for studying ETs and evolutionary dynamics related to them. In phenotypic evolution, the theory of morphodynamics states that the interplay between evolutionary factors such as phylogeny, evo-devo constraints, environment, and biological function determines morphological evolution. After introducing a new operative definition, here we provide a morphodynamics-based framework for studying phenotypic ETs, discussing how understanding the impact of these factors on ETs improves the explanation of links between biological patterns and processes underpinning directional evolution. We envisage that adopting a quantitative, pattern-based, and multifactorial approach will pave the way to new potential applications for this field of evolutionary biology. In this framework, by exploiting the catalysing effect of climate change on evolution, research on ETs induced by global change might represent an ideal arena for validating hypotheses about the predictability of evolution.
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30
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Moen DS, Ravelojaona RN, Hutter CR, Wiens JJ. Testing for adaptive radiation: A new approach applied to Madagascar frogs. Evolution 2021; 75:3008-3025. [PMID: 34396527 DOI: 10.1111/evo.14328] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2020] [Accepted: 07/17/2021] [Indexed: 11/27/2022]
Abstract
Adaptive radiation is a key topic at the intersection of ecology and evolutionary biology. Yet the definition and identification of adaptive radiation both remain contentious. Here, we introduce a new approach for identifying adaptive radiations that combines key aspects of two widely used definitions. Our approach compares evolutionary rates in morphology, performance, and diversification between the candidate radiation and other clades. We then apply this approach to a putative adaptive radiation of frogs from Madagascar (Mantellidae). We present new data on morphology and performance from mantellid frogs, then compare rates of diversification and multivariate evolution of size, shape, and performance between mantellids and other frogs. We find that mantellids potentially pass our test for accelerated rates of evolution for shape, but not for size, performance, or diversification. Our results demonstrate that clades can have accelerated phenotypic evolution without rapid diversification (dubbed "adaptive non-radiation"). We also highlight general issues in testing for adaptive radiation, including taxon sampling and the problem of including another adaptive radiation among the comparison clades. Finally, we suggest that similar tests should be conducted on other putative adaptive radiations on Madagascar, comparing their evolutionary rates to those of related clades outside Madagascar. Based on our results, we speculate that older Madagascar clades may show evolutionary patterns more similar to those on a continent than an island.
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Affiliation(s)
- Daniel S Moen
- Department of Integrative Biology, 501 Life Sciences West, Oklahoma State University, Stillwater, Oklahoma, 74078, USA
| | - Rojo N Ravelojaona
- Mention Zoologie et Biodiversité Animale, Faculté des Sciences, Université d'Antananarivo, Antananarivo, Madagascar
| | - Carl R Hutter
- Museum of Natural Science and Department of Biological Sciences, Lousiana State University, Baton Rouge, Louisiana, 70803, USA
| | - John J Wiens
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, Arizona, 85721, USA
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31
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Semple TL, Vidal-García M, Tatarnic NJ, Peakall R. Evolution of reproductive structures for in-flight mating in thynnine wasps (Hymenoptera: Thynnidae: Thynninae). J Evol Biol 2021; 34:1406-1422. [PMID: 34258799 DOI: 10.1111/jeb.13902] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2020] [Revised: 03/18/2021] [Accepted: 04/14/2021] [Indexed: 11/26/2022]
Abstract
Thynnine wasps have an unusual mating system that involves concurrent in-flight copulation and nuptial feeding of wingless females by alate males. Consequently, thynnine genitalia play a multifunctional role and have likely been subject to various different selective pressures for both reproductive success and food provisioning. Here, we present a new molecular phylogeny for the Australian Thynninae and use 3D-geometric morphometrics and comparative methods to investigate the morphological evolution of select genital structures across the group. We found significant morphological integration between all male and female structures analysed, which is likely influenced by sexual selection, but also reproductive isolation requirements and mechanical constraints. The morphology of the primary male and female coupling structures was correlated with female body size, and female genitalia exhibited strong negative size allometry. Those male and female coupling structures have evolved at similar evolutionary rates, whereas female structures appear to have evolved a higher degree of morphological novelty over time. We conclude that the unique reproductive strategies of thynnine wasps have resulted in complex evolutionary patterns in their genital morphology, which has likely played a central role in the extensive diversification of the subfamily across Australasia and South America. Our study reinforces the need to treat composite characters such as genitalia by their component parts, and to consider the roles of both male and female reproductive structures in evolutionary studies.
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Affiliation(s)
- Thomas L Semple
- Ecology and Evolution, Research School of Biology, The Australian National University, Canberra, Australia
| | - Marta Vidal-García
- Ecology and Evolution, Research School of Biology, The Australian National University, Canberra, Australia.,Department of Cell Biology and Anatomy, University of Calgary, Calgary, Canada
| | - Nikolai J Tatarnic
- Collections & Research, Western Australian Museum, Welshpool, Australia.,Centre for Evolutionary Biology, The University of Western Australia, Crawley, Perth, Australia
| | - Rod Peakall
- Ecology and Evolution, Research School of Biology, The Australian National University, Canberra, Australia
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32
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Gómez RO, Lois-Milevicich J. Why the long beak? Phylogeny, convergence, feeding ecology, and evolutionary allometry shaped the skull of the Giant Cowbird Molothrus oryzivorus (Icteridae). J Morphol 2021; 282:1587-1603. [PMID: 34369611 DOI: 10.1002/jmor.21408] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2021] [Revised: 08/04/2021] [Accepted: 08/05/2021] [Indexed: 11/09/2022]
Abstract
Cowbirds are a successful group of obligate brood parasites in the Neotropical passerine family Icteridae that offer an interesting model to explore the factors behind the evolution of the bird craniomandibular complex. The Giant Cowbird, Molothrus oryzivorus, stands out from its congeners, among other features, in diet (feeds mostly on fruit, nectar, and arthropods, instead on seeds), its larger body size, and longer, more robust beak with a much broader bony casque than in other cowbirds. In turn, Giant Cowbirds show a remarkable resemblance in these features to the distantly related caciques and oropendolas (some are its breeding hosts). However, the causes behind the latter resemblance and the distinctiveness among cowbirds have not yet been elucidated. We aim to explore the factors involved in the diverging morphology of the Giant Cowbird from its congeners and the convergence with caciques and oropendolas, surveying their skull and lower jaw under an explicit evolutionary framework. Using geometric morphometrics and comparative methods, we assessed the signal of phylogeny, convergence, feeding ecology, and size in skull shape. Our results indicated that evolution of the craniomandibular complex of icterids in general, and of the beak morphology in the Giant Cowbird in particular, are shaped by multiple factors, with phylogeny being largely overridden by changes in size (evolutionary allometry), primarily, and feeding ecology, secondarily. However, the evolution of a broad bony casque in the Giant Cowbird, otherwise a hallmark of caciques and oropendolas, does not appear to have primarily been ruled by evolutionary allometry. Instead, taking into account the unique extreme convergence between Giant Cowbirds and some of its caciques hosts, it might be consequence of selective regimes associated with parasite-host interactions acting on top of other evolutionary processes. This suggests chick mimicry as a reasonable explanation for this peculiar morphology that would require further investigation.
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Affiliation(s)
- Raúl O Gómez
- CONICET-Departamento de Biodiversidad y Biología Experimental, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Pabellón II Ciudad Universitaria, Buenos Aires, Argentina
| | - Jimena Lois-Milevicich
- Departamento de Ecología, Genética y Evolución and Instituto de Ecología, Genética y Evolución (IEGEBA-CONICET), Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Pabellón II Ciudad Universitaria, Buenos Aires, Argentina
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33
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Franco-Belussi L, Provete DB, Leão TRF, Siqueira MS, Valverde BSL, Martins BO, De Oliveira C, Fernandes CE. Hematological parameters of a Neotropical wild frog population, with a phylogenetic perspective on blood cell composition in Anura. Curr Zool 2021; 68:361-369. [PMID: 35592344 PMCID: PMC9113348 DOI: 10.1093/cz/zoab059] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2021] [Accepted: 07/20/2021] [Indexed: 01/25/2023] Open
Abstract
Hematological parameters can provide key information to an animal health status. However, this information is usually hard to obtain. Here, we described the hematological parameters of Leptodactylus podicipinus in the Brazilian Pantanal. We measured red blood cell morphometrics, erythrogram, and leukogram. We also tested for phylogenetic signal in the erythrogram and leukogram of 48 frog species from 15 families, testing if body size explains their variation. Lymphocytes were the most abundant leukocytes (>60%) in L. podicipinus, followed by neutrophils (∼10%). Given that L. podicipinus is an abundant and widely distributed species in central Brazil, knowing its hematological pattern can help establish a baseline and improve its use as a bioindicator of environmental degradation. Mean corpuscular hemoglobin and value contributed more to the phylomorphospace of erythrogram, in which Leptodactylus spp. and Hypsiboas raniceps had lower values of these variables, whereas Bufotes viridis and Hyla arborea had high values. The phylogenetic signal was spread throughout the dimensions of the leukogram phylomorphospace. The variables that most contributed to it were total leukocytes counts, lymphocytes, and neutrophils. We also found a moderate phylogenetic signal for both the erythrogram and leukogram. Accordingly, body size accounted for a low proportion of variation in both the leukogram (4.7%) and erythrogram (0.57%). By applying phylogenetic comparative methods to hematological parameters, our results add a new perspective on the evolution of blood cell physiology in frogs.
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Affiliation(s)
- Lilian Franco-Belussi
- Instituto de Biociências, Universidade Federal de Mato Grosso do Sul, Campo Grande, Mato Grosso do Sul 79002970, Brazil
| | - Diogo B Provete
- Instituto de Biociências, Universidade Federal de Mato Grosso do Sul, Campo Grande, Mato Grosso do Sul 79002970, Brazil
- Gothenburg Global Biodiversity Centre, Göteborg, Box 100, S 405 30, Sweden
| | - Taynara R F Leão
- Graduate Program in Biodiversity. Instituto de Biociências, Letras e Ciências Exatas, Universidade Estadual Paulista, São José do Rio Preto, São Paulo, Brazil
| | - Mayara S Siqueira
- Instituto de Biociências, Universidade Federal de Mato Grosso do Sul, Campo Grande, Mato Grosso do Sul 79002970, Brazil
| | - Bruno S L Valverde
- Graduate Program in Biodiversity. Instituto de Biociências, Letras e Ciências Exatas, Universidade Estadual Paulista, São José do Rio Preto, São Paulo, Brazil
| | - Brenda O Martins
- Graduate Program in Animal Biology. Instituto de Biociências, Universidade Federal de Mato Grosso do Sul, Campo Grande, Mato Grosso do Sul, Brazil
| | - Classius De Oliveira
- Departamento de Biologia. Instituto de Biociências, Letras e Ciências Exatas, São José do Rio Preto, Universidade Estadual Paulista, Brazil
| | - Carlos Eurico Fernandes
- Instituto de Biociências, Universidade Federal de Mato Grosso do Sul, Campo Grande, Mato Grosso do Sul 79002970, Brazil
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34
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Beutel RG, Friedrich F, Economo EP. Patterns of morphological simplification and innovation in the megadiverse Holometabola (Insecta). Cladistics 2021; 38:227-245. [DOI: 10.1111/cla.12483] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 06/22/2021] [Indexed: 12/22/2022] Open
Affiliation(s)
- Rolf Georg Beutel
- Entomology Group Institut für Zoologie und Evolutionsforschung Friedrich‐Schiller‐Universität Jena Erbertstrasse 1 Jena D‐07743 Germany
- Biodiversity and Biocomplexity Unit Okinawa Institute of Science and Technology Graduate University 1919‐1 Tancha, Onna‐son Kunigami‐gun Okinawa 904‐0495 Japan
| | - Frank Friedrich
- Institut für Zoologie Universität Hamburg Martin‐Luther‐King‐Platz 3 Hamburg D‐20146 Germany
| | - Evan P. Economo
- Biodiversity and Biocomplexity Unit Okinawa Institute of Science and Technology Graduate University 1919‐1 Tancha, Onna‐son Kunigami‐gun Okinawa 904‐0495 Japan
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35
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Figueirido B, Martín-Serra A, Pérez-Ramos A, Velasco D, Pastor FJ, Benson RJ. Serial disparity in the carnivoran backbone unveils a complex adaptive role in metameric evolution. Commun Biol 2021; 4:863. [PMID: 34267313 PMCID: PMC8282787 DOI: 10.1038/s42003-021-02346-0] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2020] [Accepted: 05/20/2021] [Indexed: 11/09/2022] Open
Abstract
Organisms comprise multiple interacting parts, but few quantitative studies have analysed multi-element systems, limiting understanding of phenotypic evolution. We investigate how disparity of vertebral morphology varies along the axial column of mammalian carnivores — a chain of 27 subunits — and the extent to which morphological variation have been structured by evolutionary constraints and locomotory adaptation. We find that lumbars and posterior thoracics exhibit high individual disparity but low serial differentiation. They are pervasively recruited into locomotory functions and exhibit relaxed evolutionary constraint. More anterior vertebrae also show signals of locomotory adaptation, but nevertheless have low individual disparity and constrained patterns of evolution, characterised by low-dimensional shape changes. Our findings demonstrate the importance of the thoracolumbar region as an innovation enabling evolutionary versatility of mammalian locomotion. Moreover, they underscore the complexity of phenotypic macroevolution of multi-element systems and that the strength of ecomorphological signal does not have a predictable influence on macroevolutionary outcomes. Figueirido et al. use a 3D geometric morphometric approach to study functional among-species disparity in the vertebral column of Carnivora, as well as assessing the effect of different sampling methods on homology. Disparity is generally higher in more caudal regions, compared to more cranial regions, but recruitment for locomotor function is pervasive throughout the whole studied column.
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Affiliation(s)
- Borja Figueirido
- Departamento de Ecología y Geología, Facultad de Ciencias, Universidad de Málaga, Málaga, Spain.
| | - Alberto Martín-Serra
- Departamento de Ecología y Geología, Facultad de Ciencias, Universidad de Málaga, Málaga, Spain
| | - Alejandro Pérez-Ramos
- Departamento de Ecología y Geología, Facultad de Ciencias, Universidad de Málaga, Málaga, Spain
| | - David Velasco
- Departamento de Ecología y Geología, Facultad de Ciencias, Universidad de Málaga, Málaga, Spain
| | - Francisco J Pastor
- Departamento de Anatomía y Radiología, Museo de Anatomía, Universidad de Valladolid, Valladolid, Spain
| | - Roger J Benson
- Department of Earth Sciences, University of Oxford, Oxford, UK
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36
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Blasco-Costa I, Hayward A, Poulin R, Balbuena JA. Next-generation cophylogeny: unravelling eco-evolutionary processes. Trends Ecol Evol 2021; 36:907-918. [PMID: 34243958 DOI: 10.1016/j.tree.2021.06.006] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2021] [Revised: 06/09/2021] [Accepted: 06/11/2021] [Indexed: 11/19/2022]
Abstract
A fundamental question in evolutionary biology is how microevolutionary processes translate into species diversification. Cophylogeny provides an appropriate framework to address this for symbiotic associations, but historically has been primarily limited to unveiling patterns. We argue that it is essential to integrate advances from ecology and evolutionary biology into cophylogeny, to gain greater mechanistic insights and transform cophylogeny into a platform to advance understanding of interspecific interactions and diversification more widely. We discuss key directions, such as incorporating trait reconstruction and considering multiple scales of network organization, and highlight recent developments for implementation. A new quantitative framework is proposed to allow integration of relevant information, such as quantitative traits and assessment of the contribution of individual mechanisms to cophylogenetic patterns.
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Affiliation(s)
- Isabel Blasco-Costa
- Department of Invertebrates, Natural History Museum of Geneva, PO Box 6434, CH-1211 Geneva 6, Switzerland; Department of Arctic and Marine Biology, UiT The Arctic University of Norway, Langnes, PO Box 6050, 9037 Tromsø, Norway.
| | - Alexander Hayward
- Centre for Ecology and Conservation, University of Exeter, Penryn Campus, Penryn, Cornwall, Exeter, TR10 9FE, UK
| | - Robert Poulin
- Department of Zoology, University of Otago, PO Box 56, Dunedin, New Zealand
| | - Juan A Balbuena
- Cavanilles Institute of Biodiversity and Evolutionary Biology, University of Valencia, PO Box 22085, 46071 Valencia, Spain
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37
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Evolution of the locomotor skeleton in Anolis lizards reflects the interplay between ecological opportunity and phylogenetic inertia. Nat Commun 2021; 12:1525. [PMID: 33750763 PMCID: PMC7943571 DOI: 10.1038/s41467-021-21757-5] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2020] [Accepted: 02/11/2021] [Indexed: 01/31/2023] Open
Abstract
Anolis lizards originated in continental America but have colonized the Greater Antillean islands and recolonized the mainland, resulting in three major groups (Primary and Secondary Mainland and Greater Antillean). The adaptive radiation in the Greater Antilles has famously resulted in the repeated evolution of ecomorphs. Yet, it remains poorly understood to what extent this island radiation differs from diversification on the mainland. Here, we demonstrate that the evolutionary modularity between girdles and limbs is fundamentally different in the Greater Antillean and Primary Mainland Anolis. This is consistent with ecological opportunities on islands driving the adaptive radiation along distinct evolutionary trajectories. However, Greater Antillean Anolis share evolutionary modularity with the group that recolonized the mainland, demonstrating a persistent phylogenetic inertia. A comparison of these two groups support an increased morphological diversity and faster and more variable evolutionary rates on islands. These macroevolutionary trends of the locomotor skeleton in Anolis illustrate that ecological opportunities on islands can have lasting effects on morphological diversification.
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38
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Martins BO, Franco-Belussi L, Siqueira MS, Fernandes CE, Provete DB. The evolution of red blood cell shape in fishes. J Evol Biol 2021; 34:537-548. [PMID: 33484056 DOI: 10.1111/jeb.13757] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2020] [Revised: 12/17/2020] [Accepted: 12/18/2020] [Indexed: 12/18/2022]
Abstract
The size and shape of red blood cells (RBCs) provide key information on life-history strategies in vertebrates. However, little is known about how RBC shape evolved in response to environmental factors, body size and the role of evolutionary rate. Here, we analysed RBC morphometrics in a set of Teleostei (bony fishes) and Elasmobranchii (sharks and rays) species testing the hypothesis that phylogenetic relationship explains species occupation of morphospace. We collected data on cell and nucleus area and volume, nucleus:cytoplasm ratio and shape factor for 65 species belonging to 28 orders. Then, we built phylomorphospaces separately for bony fish and sharks and rays. To test whether phylogenetic relationships predicted phenotypic similarity, we calculated multivariate phylogenetic signal. We also estimated the evolutionary rate of RBC shape for each node and tip using ridge regression. Finally, we tested whether habitat and body size influenced RBC shape using a PGLS. We found a significant phylogenetic signal in RBC shape for bony fish, but not sharks and rays. Saltwater teleost species were more clustered than freshwater ones in the phylomorphospace, suggesting clade disparity. Accordingly, the rate of evolution was highly heterogeneous, with significant decrease in Acanthopterygii. Neither habitat nor body size influenced RBC shape. In conclusion, RBC shape seems to have evolved in fishes in response to multiple selective pressures independent of life-history characters.
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Affiliation(s)
- Brenda Oliveira Martins
- Graduate Program in Animal Biology, Instituto de Biociências, Universidade Federal de Mato Grosso do Sul, Campo Grande, Brasil
| | - Lilian Franco-Belussi
- Instituto de Biociências, Universidade Federal de Mato Grosso do Sul, Campo Grande, Brasil
| | | | - Carlos E Fernandes
- Instituto de Biociências, Universidade Federal de Mato Grosso do Sul, Campo Grande, Brasil
| | - Diogo B Provete
- Instituto de Biociências, Universidade Federal de Mato Grosso do Sul, Campo Grande, Brasil.,Gothenburg Global Biodiversity Centre, Göteborg, Sweden
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39
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Porto DS, Almeida EAB, Pennell MW. Investigating Morphological Complexes Using Informational Dissonance and Bayes Factors: A Case Study in Corbiculate Bees. Syst Biol 2021; 70:295-306. [PMID: 32722788 PMCID: PMC7882150 DOI: 10.1093/sysbio/syaa059] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2019] [Revised: 07/16/2020] [Accepted: 07/17/2020] [Indexed: 11/22/2022] Open
Abstract
It is widely recognized that different regions of a genome often have different evolutionary histories and that ignoring this variation when estimating phylogenies can be misleading. However, the extent to which this is also true for morphological data is still largely unknown. Discordance among morphological traits might plausibly arise due to either variable convergent selection pressures or else phenomena such as hemiplasy. Here, we investigate patterns of discordance among 282 morphological characters, which we scored for 50 bee species particularly targeting corbiculate bees, a group that includes the well-known eusocial honeybees and bumblebees. As a starting point for selecting the most meaningful partitions in the data, we grouped characters as morphological modules, highly integrated trait complexes that as a result of developmental constraints or coordinated selection we expect to share an evolutionary history and trajectory. In order to assess conflict and coherence across and within these morphological modules, we used recently developed approaches for computing Bayesian phylogenetic information allied with model comparisons using Bayes factors. We found that despite considerable conflict among morphological complexes, accounting for among-character and among-partition rate variation with individual gamma distributions, rate multipliers, and linked branch lengths can lead to coherent phylogenetic inference using morphological data. We suggest that evaluating information content and dissonance among partitions is a useful step in estimating phylogenies from morphological data, just as it is with molecular data. Furthermore, we argue that adopting emerging approaches for investigating dissonance in genomic datasets may provide new insights into the integration and evolution of anatomical complexes. [Apidae; entropy; morphological modules; phenotypic integration; phylogenetic information.].
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Affiliation(s)
- Diego S Porto
- Laboratório de Biologia Comparada e Abelhas (LBCA), Departamento de Biologia, Faculdade de Filosofia, Ciências e Letras de Ribeirão Preto (FFCLRP), Universidade de São Paulo, 14040-901 Ribeirão Preto, SP, Brazil
- Department of Zoology and Biodiversity Research Centre, University of British Columbia, Vancouver BC V6T 1Z4, Canada
- Department of Biological Sciences, Virginia Polytechnic Institute and State University, 926 West Campus Drive, Blacksburg, VA 24061 USA
| | - Eduardo A B Almeida
- Laboratório de Biologia Comparada e Abelhas (LBCA), Departamento de Biologia, Faculdade de Filosofia, Ciências e Letras de Ribeirão Preto (FFCLRP), Universidade de São Paulo, 14040-901 Ribeirão Preto, SP, Brazil
| | - Matthew W Pennell
- Department of Zoology and Biodiversity Research Centre, University of British Columbia, Vancouver BC V6T 1Z4, Canada
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40
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Bjarnason A, Benson R. A 3D geometric morphometric dataset quantifying skeletal variation in birds. ACTA ACUST UNITED AC 2021. [DOI: 10.18563/journal.m3.125] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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41
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Burns MD. Adaptation to herbivory and detritivory drives the convergent evolution of large abdominal cavities in a diverse freshwater fish radiation (Otophysi: Characiformes). Evolution 2021; 75:688-705. [PMID: 33491179 DOI: 10.1111/evo.14178] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2020] [Revised: 12/21/2020] [Accepted: 12/23/2020] [Indexed: 12/29/2022]
Abstract
Convergent evolution is often interpreted as evidence of natural selection favoring an optimal phenotype during adaptation. Morphological convergence is frequently found among lineages that converge on diet, but most studies have focused on morphological traits that relate exclusively to food handling and processing. In vertebrates, there is a strong inverse relationship between intestine length and trophic level. However, little is known about whether adaptation to a low trophic level influences the evolution of abdominal cavities that can accommodate larger intestines. Here, I reconstruct the evolutionary history of trophic ecology and examine abdominal cavity shape across 157 species of the fish order Characiformes to determine whether adaptation to an herbivorous-detritivorous diet drives convergent evolution of large abdominal cavities. Herbivorous-detritivorous species evolved significantly larger abdominal cavities than other trophic groups and repeatedly converged on a similar abdominal cavity morphology. Other trophic groups evolved abdominal cavity morphologies either stochastically or by selective pressures from an untested ecological character. These findings demonstrate that the selective demands of a larger intestinal tract promote the repeated convergence of a large abdominal cavity within herbivorous-detritivorous characiform fishes, while allowing other lineages to evolve randomly or adapt in response to other selection pressures, contributing to the overall body shape diversity of the order.
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Affiliation(s)
- Michael D Burns
- Cornell Lab of Ornithology, Cornell Museum of Vertebrates, Cornell University, Ithaca, New York, USA
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42
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Roberts AS, Hodge JR, Chakrabarty P, Wainwright PC. Anatomical basis of diverse jaw protrusion directionality in ponyfishes (Family Leiognathidae). J Morphol 2021; 282:427-437. [PMID: 33372314 DOI: 10.1002/jmor.21314] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2020] [Revised: 12/23/2020] [Accepted: 12/26/2020] [Indexed: 11/11/2022]
Abstract
Protrusion of the oral jaws is a key morphological innovation that enhances feeding performance in fishes. The mechanisms of protrusion and the basis of variation in its magnitude are well studied, but little attention has been paid to the functional morphology of protrusion directionality, despite wide variation among teleost species from slightly dorsal to strongly ventral. Ponyfishes (Leiognathidae) comprise a group of 52 species that exhibit striking diversity in the directionality of jaw protrusion, providing a promising system for exploring its underlying basis in a single clade. We examined the anatomical basis of protrusion directionality by measuring eight traits associated with the size and positioning of oral jaw bones. Measurements were made on cleared and stained specimens of 20 ponyfish species, representing every major lineage within the family. Species fell into three nonoverlapping clusters with respect to directionality including dorsal, rostral, and ventral protruders. A key correlate of protrusion direction is the anterior-posterior position of the articular-quadrate jaw joint. As the joint position moves from a posterior to a more anterior location, the orientation of the relaxed mandible rotates from an almost horizontal resting position to an upright vertical posture. Abduction of the mandible from the horizontal position results in ventrally directed protrusion, while the more upright mandible rotates to a position that maintains dorsal orientation. The resting orientation of the premaxilla and maxilla, thus, vary consistently with protrusion direction. Mouth size, represented by length of the mandible and maxilla, is a second major axis of variation in ponyfishes that is independent of variation in protrusion directionality.
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Affiliation(s)
- Alexus S Roberts
- Department of Evolution and Ecology, University of California Davis, Davis, California, USA
| | - Jennifer R Hodge
- Department of Biological Sciences, Clemson University, Clemson, South Carolina, USA
| | - Prosanta Chakrabarty
- Department of Biological Sciences, Museum of Natural Science, Louisiana State University, Baton Rouge, Louisiana, USA
| | - Peter C Wainwright
- Department of Evolution and Ecology, University of California Davis, Davis, California, USA
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43
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Corn KA, Martinez CM, Burress ED, Wainwright PC. A Multifunction Trade-Off has Contrasting Effects on the Evolution of Form and Function. Syst Biol 2021; 70:681-693. [PMID: 33331913 DOI: 10.1093/sysbio/syaa091] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2020] [Revised: 11/14/2020] [Accepted: 11/19/2020] [Indexed: 01/14/2023] Open
Abstract
Trade-offs caused by the use of an anatomical apparatus for more than one function are thought to be an important constraint on evolution. However, whether multifunctionality suppresses diversification of biomechanical systems is challenged by recent literature showing that traits more closely tied to trade-offs evolve more rapidly. We contrast the evolutionary dynamics of feeding mechanics and morphology between fishes that exclusively capture prey with suction and multifunctional species that augment this mechanism with biting behaviors to remove attached benthic prey. Diversification of feeding kinematic traits was, on average, over 13.5 times faster in suction feeders, consistent with constraint on biters due to mechanical trade-offs between biting and suction performance. Surprisingly, we found that the evolution of morphology contrasts directly with these differences in kinematic evolution, with significantly faster rates of evolution of head shape in biters. This system provides clear support for an often postulated, but rarely confirmed prediction that multifunctionality stifles functional diversification, while also illustrating the sometimes weak relationship between form and function. [Form-function evolution; geometric morphometrics; kinematic evolution; macroevolution; Ornstein-Uhlenbeck; RevBayes; suction feeding].
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Affiliation(s)
- Katherine A Corn
- Department of Evolution & Ecology, University of California, Davis, 2320 Storer Hall, 1 Shields Ave, Davis, CA, 95616 USA
| | - Christopher M Martinez
- Department of Evolution & Ecology, University of California, Davis, 2320 Storer Hall, 1 Shields Ave, Davis, CA, 95616 USA
| | - Edward D Burress
- Department of Evolution & Ecology, University of California, Davis, 2320 Storer Hall, 1 Shields Ave, Davis, CA, 95616 USA
| | - Peter C Wainwright
- Department of Evolution & Ecology, University of California, Davis, 2320 Storer Hall, 1 Shields Ave, Davis, CA, 95616 USA
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44
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Affiliation(s)
| | - Dean C. Adams
- Department of Ecology, Evolution, and Organismal Biology Iowa State University Ames IA USA
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45
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De Mendoza RS, Gómez RO, Tambussi CP. The lacrimal/ectethmoid region of waterfowl (Aves, Anseriformes): Phylogenetic signal and major evolutionary patterns. J Morphol 2020; 281:1486-1500. [PMID: 32936967 DOI: 10.1002/jmor.21265] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2020] [Revised: 08/02/2020] [Accepted: 09/02/2020] [Indexed: 11/08/2022]
Abstract
Waterfowl (Aves, Anseriformes) constitute an ancient global radiation, and understanding the pattern and timing of their evolution requires a well-corroborated phylogeny including extant species and fossils. Following the molecular advances in avian systematics, however, morphology has often been held as misleading, yet congruence with molecular data has been shown to vary considerably among different skeletal parts. Here, we explore phylogenetic signal in discrete characters of the lacrimal/ectethmoid region of waterfowl, which is highly variable among species and constitutes a rich source of data. We do so by combining cladistic and multivariate approaches, and using phylogenetic comparative methods. We quantitatively recognize three major morphological types among lacrimal bones, and discuss homoplasy and potential synapomorphies of major clades using a molecular backbone tree. Our results clearly indicate that the lacrimal bone carries substantial phylogenetic signal and could be of systematic value at different levels of the phylogeny of waterfowl, feeding the exploration of other regions of the skull with this combined approach.
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Affiliation(s)
- Ricardo S De Mendoza
- Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Argentina.,División Paleontología Vertebrados, Museo de La Plata, Facultad de Ciencias Naturales y Museo, Universidad Nacional de La Plata, La Plata, Argentina
| | - Raúl O Gómez
- Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Argentina.,Departamento de Biodiversidad y Biología Experimental, Facultad de Ciencias Exactas, Físicas y Naturales, Universidad de Buenos Aires, Pabellón 2, Ciudad Universitaria, Buenos Aires, Argentina
| | - Claudia P Tambussi
- Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Argentina.,Centro de Investigaciones en Ciencias de la Tierra (CICTERRA), Universidad Nacional de Córdoba, Ciudad Universitaria, Córdoba, X5016GCA, Argentina
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46
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Feiner N, Jackson IS, Munch KL, Radersma R, Uller T. Plasticity and evolutionary convergence in the locomotor skeleton of Greater Antillean Anolis lizards. eLife 2020; 9:57468. [PMID: 32788040 PMCID: PMC7508556 DOI: 10.7554/elife.57468] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2020] [Accepted: 08/12/2020] [Indexed: 01/27/2023] Open
Abstract
Plasticity can put evolution on repeat if development causes species to generate similar morphologies in similar environments. Anolis lizards offer the opportunity to put this role of developmental plasticity to the test. Following colonization of the four Greater Antillean islands, Anolis lizards independently and repeatedly evolved six ecomorphs adapted to manoeuvring different microhabitats. By quantifying the morphology of the locomotor skeleton of 95 species, we demonstrate that ecomorphs on different islands have diverged along similar trajectories. However, microhabitat-induced morphological plasticity differed between species and did not consistently improve individual locomotor performance. Consistent with this decoupling between morphological plasticity and locomotor performance, highly plastic features did not show greater evolvability, and plastic responses to microhabitat were poorly aligned with evolutionary divergence between ecomorphs. The locomotor skeleton of Anolis may have evolved within a subset of possible morphologies that are highly accessible through genetic change, enabling adaptive convergence independently of plasticity.
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Affiliation(s)
| | | | - Kirke L Munch
- School of Biological Sciences, University of Tasmania, Hobart TAS, Australia
| | | | - Tobias Uller
- Department of Biology, Lund University, Lund, Sweden
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47
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Cohen KE, Weller HI, Summers AP. Not your father's homodonty-stress, tooth shape, and the functional homodont. J Anat 2020; 237:837-848. [PMID: 32683739 DOI: 10.1111/joa.13248] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2019] [Revised: 05/19/2020] [Accepted: 05/20/2020] [Indexed: 12/31/2022] Open
Abstract
Teeth tell the tale of interactions between predator and prey. If a dental battery is made up of teeth that look similar, they are morphologically homodont, but if there is an unspecified amount of regional specialization in size or shape, they are morphologically heterodont. These are vague terms with no useful functional implication because morphological homodonty does not necessarily equal functional homodonty. Teeth that look the same may not function the same. Conical teeth are prevalent in fishes, superficially tasked with the simple job of puncture. There is a great deal of variation in the shape and placement of conical teeth. Anterior teeth may be larger than posterior ones, larger teeth may be surrounded by small ones, and patches of teeth may all have the same size and shape. Such variations suggest that conical dentitions might represent a single morphological solution for different functional problems. We are interested in the concept of homodonty and using the conical tooth as a model to differentiate between tooth shape and performance. We consider the stress that a tooth can exert on prey as stress is what causes damage. To create a statistical measure of functional homodonty, stress was calculated from measurements of surface area, position, and applied force. Functional homodonty is then defined as the degree to which teeth along the jaw all bear/exert similar stresses despite changes in shape. We find that morphologically heterodont teeth are often functionally homodont and that position is a better predictor of performance than shape. Furthermore, the arrangement of teeth affects their function, such that there is a functional advantage to having several smaller teeth surrounding a singular large tooth. We demonstrate that this arrangement of teeth is useful to grab, rather than tear, prey upon puncture, with the smaller teeth dissipating large stress forces around the larger tooth. We show that measurements of how shape affects stress distribution in response to loading give us a clearer picture of the evolution of conically shaped teeth.
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Affiliation(s)
- Karly E Cohen
- Biology Department, University of Washington, Seattle, WA, USA.,Friday Harbor Labs, University of Washington, Friday Harbor, WA, USA
| | - Hannah I Weller
- Department of Ecology and Evolutionary Biology, Brown University, Providence, RI, USA
| | - Adam P Summers
- Biology Department, University of Washington, Seattle, WA, USA.,Friday Harbor Labs, University of Washington, Friday Harbor, WA, USA
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48
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Abstract
The stress phenotype is multivariate. Recent advances have broadened our understanding beyond characterizing the stress response in a single dimension. Simultaneously, the toolbox available to ecophysiologists has expanded greatly in recent years, allowing the measurement of multiple biomarkers from an individual at a single point in time. Yet these advances-in our conceptual understanding and available methodologies-have not yet been combined in a unifying multivariate statistical framework. Here, we offer a brief review of the multivariate stress phenotype and describe a general statistical approach for analysis using nonparametric multivariate analysis of variance with residual randomization in permutation procedures (RRPP) implemented using the "RRPP" package in R. We also provide an example illustrating the novel insights that can be gained from a holistic multivariate approach to stress and provide a tutorial for how we analyzed these data, including annotated R code and a guide to interpretation of outputs (Online Appendix 1). We hope that this statistical methodology will provide a quantitative framework facilitating the unification of our theoretical understanding and empirical observations into a quantitative, multivariate theory of stress.
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Affiliation(s)
- Rory S Telemeco
- Department of Biology, California State University Fresno, Fresno, CA 93740, USA
| | - Eric J Gangloff
- Department of Zoology, Ohio Wesleyan University, Delaware, OH 43015, USA
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49
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Segall M, Cornette R, Godoy‐Diana R, Herrel A. Exploring the functional meaning of head shape disparity in aquatic snakes. Ecol Evol 2020; 10:6993-7005. [PMID: 32760507 PMCID: PMC7391336 DOI: 10.1002/ece3.6380] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2020] [Revised: 03/30/2020] [Accepted: 04/22/2020] [Indexed: 12/26/2022] Open
Abstract
Phenotypic diversity, or disparity, can be explained by simple genetic drift or, if functional constraints are strong, by selection for ecologically relevant phenotypes. We here studied phenotypic disparity in head shape in aquatic snakes. We investigated whether conflicting selective pressures related to different functions have driven shape diversity and explore whether similar phenotypes may give rise to the same functional output (i.e., many-to-one mapping of form to function). We focused on the head shape of aquatically foraging snakes as they fulfill several fitness-relevant functions and show a large amount of morphological variability. We used 3D surface scanning and 3D geometric morphometrics to compare the head shape of 62 species in a phylogenetic context. We first tested whether diet specialization and size are drivers of head shape diversification. Next, we tested for many-to-one mapping by comparing the hydrodynamic efficiency of head shape characteristic of the main axes of variation in the dataset. We 3D printed these shapes and measured the forces at play during a frontal strike. Our results show that diet and size explain only a small amount of shape variation. Shapes did not fully functionally converge as more specialized aquatic species evolved a more efficient head shape than others. The shape disparity observed could thus reflect a process of niche specialization.
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Affiliation(s)
- Marion Segall
- Department of HerpetologyAmerican Museum of Natural HistoryNew YorkNYUSA
- UMR CNRS/MNHN 7179Mécanismes adaptatifs et EvolutionParisFrance
- Laboratoire de Physique et Mécanique des Milieux Hétérogènes (PMMHUMR 7636)CNRSESPCI Paris–PSL Research UniversityUniversité Paris DiderotSorbonne UniversitéParisFrance
| | | | - Ramiro Godoy‐Diana
- Laboratoire de Physique et Mécanique des Milieux Hétérogènes (PMMHUMR 7636)CNRSESPCI Paris–PSL Research UniversityUniversité Paris DiderotSorbonne UniversitéParisFrance
| | - Anthony Herrel
- UMR CNRS/MNHN 7179Mécanismes adaptatifs et EvolutionParisFrance
- Evolutionary Morphology of VertebratesGhent UniversityGhentBelgium
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50
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Adams DC, Glynne E, Kaliontzopoulou A. Interspecific allometry for sexual shape dimorphism: Macroevolution of multivariate sexual phenotypes with application to Rensch's rule. Evolution 2020; 74:1908-1922. [PMID: 32578880 DOI: 10.1111/evo.14049] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2020] [Accepted: 06/19/2020] [Indexed: 12/31/2022]
Abstract
Allometric trends in the degree of sexual dimorphism with body size have long fascinated evolutionary biologists. Many male-biased clades display more prominent sexual dimorphism in larger taxa (Rensch's rule), with most examples documenting this pattern for body size dimorphism. Although sexual dimorphism in traits other than body size is equally functionally relevant, characterizing allometric patterns of sexual dimorphism in such traits is hampered by lack of an analytical framework that can accommodate multivariate phenotypes. In this article, we derive a multivariate equivalency for investigating trends in sexual dimorphism-relative to overall body size-across taxa and provide a generalized test to determine whether such allometric patterns correspond with Rensch's rule. For univariate linear traits such as body size, our approach yields equivalent results to those from standard procedures, but our test is also capable of detecting trends in multivariate datasets such as shape. Computer simulations reveal that the method displays appropriate statistical properties, and an empirical example in Mediterranean lizards provides the first demonstration of Rensch's rule in a multivariate phenotype (head shape). Our generalized procedure substantially extends the analytical toolkit for investigating macroevolutionary patterns of sexual dimorphism and seeking a better understanding of the processes that underlie them.
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Affiliation(s)
- Dean C Adams
- Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa, 50011
| | - Elizabeth Glynne
- Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa, 50011
| | - Antigoni Kaliontzopoulou
- CIBIO Research Centre in Biodiversity and Genetic Resources, InBIO, Universidade do Porto, Campus de Vairão, Vila do Conde, Porto, 4099-002, Portugal
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