1
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Sui X, Xu B, Kostko O, Yu XY. Investigation of pyruvic acid photolysis at the air-liquid interface as a source of aqueous secondary organic aerosols. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 930:172729. [PMID: 38670353 DOI: 10.1016/j.scitotenv.2024.172729] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/28/2024] [Revised: 04/22/2024] [Accepted: 04/22/2024] [Indexed: 04/28/2024]
Abstract
Pyruvic acid (PA) is a ubiquitous 2-oxocarboxylic acid in the atmosphere. Its photochemical process at the air-liquid (a-l) interface has been suggested as an important source of aqueous secondary organic aerosols. We investigated the photochemical reaction pathways of PA at the a-l interface using synchrotron-based vacuum ultraviolet single-photon ionization mass spectrometry (VUV SPI-MS) coupled with the System for Analysis at the Liquid Vacuum Interface (SALVI) microreactor. Results from mass spectral analysis and the determination of appearance energies (AEs) indicate that photolysis of PA can generate radicals, then they recombine with carboxylic acids and simple molecular oligomers. Furthermore, the preliminary products could form larger oligomers via radical reaction or esterification in the presence of hydroxyl and carboxyl functional groups. Mass spectral comparison shows that most photochemical reactions would complete within 4 h. The expanded photochemistry-driven reaction flowchart of PA is proposed based on the newly discovered products. Our results reveal that the interfacial PA photochemical reactions have different mechanisms from the bulk liquid due to the interfacial properties, such as molecular density, composition, and ion concentration. Our findings show that in situ mass spectral analysis with bright photon ionization is useful to elucidate the contribution of a-l interfacial reactions leading to aqSOA formation.
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Affiliation(s)
- Xiao Sui
- College of Geography and Environment, Shandong Normal University, Jinan 250358, China
| | - Bo Xu
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, United States
| | - Oleg Kostko
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, United States
| | - Xiao-Ying Yu
- Materials Science and Technology Division, Oak Ridge National Laboratory, Oak Ridge, TN 37830-6136, United States.
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2
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Wannenmacher A, Lu W, Amarasinghe C, Cerasoli F, Donadio D, Ahmed M. An experimental and computational view of the photoionization of diol-water clusters. J Chem Phys 2024; 160:144303. [PMID: 38591680 DOI: 10.1063/5.0198162] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2024] [Accepted: 03/15/2024] [Indexed: 04/10/2024] Open
Abstract
In the interstellar medium, diols and other prebiotic molecules adsorb onto icy mantles surrounding dust grains. Water in the ice may affect the reactivity and photoionization of these diols. Ethylene glycol (EG), 1,2-propylene glycol, and 1,3-propylene glycol clusters with water clusters were used as a proxy to study these interactions. The diol-water clusters were generated in a continuous supersonic molecular beam, photoionized by synchrotron-based vacuum ultraviolet light from the Advanced Light Source, and subsequently detected by reflectron time-of-flight mass spectrometry. The appearance energies for the detected clusters were determined from the mass spectra, collected at increasing photon energy. Clusters of both diol fragments and unfragmented diols with water were detected. The lowest energy geometry optimized conformers for the observed EG-water clusters and EG fragment-water clusters have been visualized using density functional theory (DFT), providing insight into hydrogen bonding networks and how these affect fragmentation and appearance energy. As the number of water molecules clustered around EG fragments (m/z 31 and 32) increased, the appearance energy for the cluster decreased, indicating a stabilization by water. This trend was supported by DFT calculations. Fragment clusters from 1,2-propylene glycol exhibited a similar trend, but with a smaller energy decrease, and no trend was observed from 1,3-propylene glycol. We discuss and suggest that the reactivity and photoionization of diols in the presence of water depend on the size of the diol, the location of the hydroxyl group, and the number of waters clustered around the diol.
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Affiliation(s)
- Anna Wannenmacher
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
- Department of Chemistry, University of California, Davis, California 95616, USA
| | - Wenchao Lu
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | - Chandika Amarasinghe
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | - Frank Cerasoli
- Department of Chemistry, University of California, Davis, California 95616, USA
| | - Davide Donadio
- Department of Chemistry, University of California, Davis, California 95616, USA
| | - Musahid Ahmed
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
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3
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Qi K, Lv Y, Xiong Y, Tian C, Liu C, Pan Y. Development of Transmission Ambient Pressure Laser Desorption Ionization/Postphotoionization Mass Spectrometry Imaging. Anal Chem 2024; 96:5489-5498. [PMID: 38527864 DOI: 10.1021/acs.analchem.3c05605] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/27/2024]
Abstract
Laser-based high-resolution mass spectrometry imaging at ambient conditions has promising applications in life science. However, the ion yield during laser desorption/ablation is poor. Here, transmission atmospheric pressure laser desorption ionization combined with a compact postphotoionization (t-AP-LDI/PI) assembly with a krypton discharge lamp was developed for the untargeted imaging of various biomolecules. The spatial distributions of numerous lipid classes, fatty acids, neurotransmitters, and amino acids in the subregions of mouse cerebellum tissue were obtained. Compared with single laser ablation, the sensitivities for most analytes were increased by 1 to 3 orders of magnitude by dopant-assisted postphotoionization. After careful optimization, a spatial resolution of 4 μm could be achieved for the metabolites in mouse hippocampus tissue. Finally, the melanoma tissue slices were analyzed using t-AP-LDI/PI MSI, which revealed the metabolic heterogeneity of the melanoma microenvironment and exhibited the phenomenon of abnormal proliferation and invasion trends in tumor cells.
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Affiliation(s)
- Keke Qi
- National Synchrotron Radiation Laboratory, University of Science and Technology of China, Hefei 230029, China
- High Magnetic Field Laboratory, Chinese Academy of Sciences, Hefei, Anhui 230031, China
| | - Yongmei Lv
- Department of Dermatology, The Second Affiliated Hospital of Anhui Medical University, Hefei 230601, China
| | - Ying Xiong
- Hefei National Laboratory for Physical Sciences at the Microscale, School of Life Sciences, University of Science and Technology of China, Hefei 230026, China
| | - Changlin Tian
- High Magnetic Field Laboratory, Chinese Academy of Sciences, Hefei, Anhui 230031, China
- Hefei National Laboratory for Physical Sciences at the Microscale, School of Life Sciences, University of Science and Technology of China, Hefei 230026, China
| | - Chengyuan Liu
- National Synchrotron Radiation Laboratory, University of Science and Technology of China, Hefei 230029, China
| | - Yang Pan
- National Synchrotron Radiation Laboratory, University of Science and Technology of China, Hefei 230029, China
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4
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Dey S, Folkestad SD, Paul AC, Koch H, Krylov AI. Core-ionization spectrum of liquid water. Phys Chem Chem Phys 2024; 26:1845-1859. [PMID: 38174659 DOI: 10.1039/d3cp02499g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2024]
Abstract
We present state-of-the-art calculations of the core-ionization spectrum of water. Despite significant progress in procedures developed to mitigate various experimental complications and uncertainties, the experimental determination of ionization energies of solvated species involves several non-trivial steps such as assessing the effect of the surface potential, electrolytes, and finite escape depths of photoelectrons. This provides a motivation to obtain robust theoretical values of the intrinsic bulk ionization energy and the corresponding solvent-induced shift. Here we develop theoretical protocols based on coupled-cluster theory and electrostatic embedding. Our value of the intrinsic solvent-induced shift of the 1sO ionization energy of water is -1.79 eV. The computed absolute position and the width of the 1sO peak in photoelectron spectrum of water are 538.47 eV and 1.44 eV, respectively, agreeing well with the best experimental values.
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Affiliation(s)
- Sourav Dey
- Department of Chemistry, University of Southern California, Los Angeles, CA 90089, USA.
| | - Sarai Dery Folkestad
- Department of Chemistry, University of Southern California, Los Angeles, CA 90089, USA.
| | - Alexander C Paul
- Department of Chemistry, Norwegian University of Science and Technology, 7491 Trondheim, Norway
| | - Henrik Koch
- Department of Chemistry, Norwegian University of Science and Technology, 7491 Trondheim, Norway
| | - Anna I Krylov
- Department of Chemistry, University of Southern California, Los Angeles, CA 90089, USA.
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5
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Marks J, Wang J, Sun BJ, McAnally M, Turner AM, Chang AHH, Kaiser RI. Thermal Synthesis of Carbamic Acid and Its Dimer in Interstellar Ices: A Reservoir of Interstellar Amino Acids. ACS CENTRAL SCIENCE 2023; 9:2241-2250. [PMID: 38161363 PMCID: PMC10755733 DOI: 10.1021/acscentsci.3c01108] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/01/2023] [Revised: 10/13/2023] [Accepted: 10/19/2023] [Indexed: 01/03/2024]
Abstract
Reactions in interstellar ices are shown to be capable of producing key prebiotic molecules without energetic radiation that are necessary for the origins of life. When present in interstellar ices, carbamic acid (H2NCOOH) can serve as a condensed-phase source of the molecular building blocks for more complex proteinogenic amino acids. Here, Fourier transform infrared spectroscopy during heating of analogue interstellar ices composed of carbon dioxide and ammonia identifies the lower limit for thermal synthesis to be 62 ± 3 K for carbamic acid and 39 ± 4 K for its salt ammonium carbamate ([H2NCOO-][NH4+]). While solvation increases the rates of formation and decomposition of carbamic acid in ice, the absence of solvent effects after sublimation results in a significant barrier to dissociation and a stable gas-phase molecule. Photoionization reflectron time-of-flight mass spectrometry permits an unprecedented degree of sensitivity toward gaseous carbamic acid and demonstrates sublimation of carbamic acid from decomposition of ammonium carbamate and again at higher temperatures from carbamic acid dimers. Since the dimer is observed at temperatures up to 290 K, similar to the environment of a protoplanetary disk, this dimer is a promising reservoir of amino acids during the formation of stars and planets.
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Affiliation(s)
- Joshua
H. Marks
- W.
M. Keck Research Laboratory in Astrochemistry, University of Hawai’i at Manoa, Honolulu, Hawaii 96822, United States
- Department
of Chemistry, University of Hawai’i
at Manoa, Honolulu, Hawaii 96822, United States
| | - Jia Wang
- W.
M. Keck Research Laboratory in Astrochemistry, University of Hawai’i at Manoa, Honolulu, Hawaii 96822, United States
- Department
of Chemistry, University of Hawai’i
at Manoa, Honolulu, Hawaii 96822, United States
| | - Bing-Jian Sun
- Department
of Chemistry, National Dong Hwa University, Hualien 974, Taiwan
| | - Mason McAnally
- W.
M. Keck Research Laboratory in Astrochemistry, University of Hawai’i at Manoa, Honolulu, Hawaii 96822, United States
- Department
of Chemistry, University of Hawai’i
at Manoa, Honolulu, Hawaii 96822, United States
| | - Andrew M. Turner
- W.
M. Keck Research Laboratory in Astrochemistry, University of Hawai’i at Manoa, Honolulu, Hawaii 96822, United States
- Department
of Chemistry, University of Hawai’i
at Manoa, Honolulu, Hawaii 96822, United States
| | - Agnes H.-H. Chang
- Department
of Chemistry, National Dong Hwa University, Hualien 974, Taiwan
| | - Ralf I. Kaiser
- W.
M. Keck Research Laboratory in Astrochemistry, University of Hawai’i at Manoa, Honolulu, Hawaii 96822, United States
- Department
of Chemistry, University of Hawai’i
at Manoa, Honolulu, Hawaii 96822, United States
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6
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Zagorac T, López Peña HA, Gross JM, Tibbetts KM, Hanley L. Experimental and Theoretical Analysis of Tricyclic Antidepressants by Ultraviolet Picosecond Laser Desorption Post-Ionization Mass Spectrometry. Anal Chem 2023; 95:17541-17549. [PMID: 37983268 DOI: 10.1021/acs.analchem.3c02735] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2023]
Abstract
Imipramine class tricyclic antidepressants have low ionization efficiencies that make them difficult to detect by using secondary ion mass spectrometry. Ultraviolet picosecond laser desorption postionization (ps-LDPI-MS) is examined here for the detection of four tricyclic antidepressants: imipramine, desipramine, amitriptyline, and clomipramine. About 30 ps laser pulses at either 213 nm (5.8 eV) or 355 nm (3.5 eV) are used for desorption of samples under vacuum, 7.9 eV (157 nm) fluorine laser pulses are used for post-ionization, and the ions so formed are detected by time-of-flight mass spectrometry. Detection of imipramine by 213 nm ps-LDPI-MS shows less fragmentation than either 355 nm ps-LDPI-MS or prior results from 800 nm fs-LDPI-MS. Ionization energies of imipramine, desipramine, amitriptyline, and clomipramine are predicted using density functional theory calculations and used to explain the corresponding ps-LDPI-MS data for these four compounds as resulting from single-photon ionization. The experimental observation of low-mass amine-containing fragments with calculated ionization energies below 7.9 eV is attributed mostly to dissociation during laser desorption, followed by single-photon ionization of the neutral fragments rather than the more traditional mechanism of unimolecular dissociation following single-photon ionization of the parent molecule.
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Affiliation(s)
- Teodora Zagorac
- Department of Chemistry, University of Illinois Chicago, Chicago, Illinois 60607, United States
| | - Hugo Andrés López Peña
- Department of Chemistry, Virginia Commonwealth University, Richmond, Virginia 23284, United States
| | - Jason M Gross
- Department of Chemistry, University of Illinois Chicago, Chicago, Illinois 60607, United States
| | - Katharine Moore Tibbetts
- Department of Chemistry, Virginia Commonwealth University, Richmond, Virginia 23284, United States
| | - Luke Hanley
- Department of Chemistry, University of Illinois Chicago, Chicago, Illinois 60607, United States
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7
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Shao K, Sun G, Gomez M, Liu X, Zhang J. Flash pyrolysis vacuum ultraviolet photoionization mass spectrometry of cycloheptane: A study of the initial decomposition mechanism. EUROPEAN JOURNAL OF MASS SPECTROMETRY (CHICHESTER, ENGLAND) 2023; 29:88-96. [PMID: 36471586 DOI: 10.1177/14690667221142699] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
Thermal decomposition of cycloheptane was studied using flash pyrolysis coupled with vacuum ultraviolet (118.2 nm) single photon ionization time-of-flight mass spectrometry at temperatures ranging from 295 K to 1380 K. C-C bond breaking of cycloheptane leading to the 1,7-heptyl diradical was considered as the initiation step. The 1,7-heptyl diradical could readily isomerize to 1-heptene and decompose into several fragments, with dissociation to •C4H9 and •C3H5 as the predominant product channel. The 1,7-heptyl diradical could undergo direct dissociation, as evidenced by the production of the C5H10 species. Quantum chemistry calculations at UCCSD(T)/cc-pVDZ//UB3LYP/cc-pVDZ level of theory on the initial reaction pathways of cycloheptane were also carried out to support the experimental observations. Other possible initiation channels, as well as some secondary reaction products, were also identified.
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Affiliation(s)
- Kuanliang Shao
- Department of Chemistry, University of California, Riverside, CA, USA
| | - Ge Sun
- Department of Chemistry, University of California, Riverside, CA, USA
| | - Mariah Gomez
- Department of Chemistry and Biochemistry, University of California, Los Angeles, CA, USA
| | - Xinghua Liu
- College of Science, 74629Hainan University, Hainan, China
| | - Jingsong Zhang
- Department of Chemistry, University of California, Riverside, CA, USA
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8
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Marks JH, Wang J, Kleimeier NF, Turner AM, Eckhardt AK, Kaiser RI. Prebiotic Synthesis and Isomerization in Interstellar Analog Ice: Glycinal, Acetamide, and Their Enol Tautomers. Angew Chem Int Ed Engl 2023; 62:e202218645. [PMID: 36702757 DOI: 10.1002/anie.202218645] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2022] [Revised: 01/23/2023] [Accepted: 01/25/2023] [Indexed: 01/28/2023]
Abstract
Glycinal (HCOCH2 NH2 ) and acetamide (CH3 CONH2 ) are simple molecular building blocks of biomolecules in prebiotic chemistry, though their origin on early Earth and formation in interstellar media remain a mystery. These molecules are formed with their tautomers in low temperature interstellar model ices upon interaction with simulated galactic cosmic rays. Glycinal and acetamide are accessed via barrierless radical-radical reactions of vinoxy (⋅CH2 CHO) and acetyl (⋅C(O)CH3 ), and then undergo keto-enol tautomerization. Exploiting tunable photoionization reflectron time-of-flight mass spectroscopy and photoionization efficiency (PIE) curves, these results demonstrate fundamental reaction pathways for the formation of complex organics through non-equilibrium ice reactions in cold molecular cloud environments. These molecules demonstrate an unconventional starting point for abiotic synthesis of organics relevant to contemporary biomolecules like polypeptides and cell membranes in deep space.
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Affiliation(s)
- Joshua H Marks
- Department of Chemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA.,W. M. Keck Research Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA
| | - Jia Wang
- Department of Chemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA.,W. M. Keck Research Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA
| | - N Fabian Kleimeier
- Department of Chemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA.,W. M. Keck Research Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA
| | - Andrew M Turner
- Department of Chemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA.,W. M. Keck Research Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA
| | - André K Eckhardt
- Lehrstuhl für Organische Chemie II, Ruhr-Universität Bochum, 44801, Bochum, Germany
| | - Ralf I Kaiser
- Department of Chemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA.,W. M. Keck Research Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA
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9
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Wang J, Marks JH, Turner AM, Nikolayev AA, Azyazov V, Mebel AM, Kaiser RI. Mechanistical study on the formation of hydroxyacetone (CH 3COCH 2OH), methyl acetate (CH 3COOCH 3), and 3-hydroxypropanal (HCOCH 2CH 2OH) along with their enol tautomers (prop-1-ene-1,2-diol (CH 3C(OH)CHOH), prop-2-ene-1,2-diol (CH 2C(OH)CH 2OH), 1-methoxyethen-1-ol (CH 3OC(OH)CH 2) and prop-1-ene-1,3-diol (HOCH 2CHCHOH)) in interstellar ice analogs. Phys Chem Chem Phys 2023; 25:936-953. [PMID: 36285574 DOI: 10.1039/d2cp03543j] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
We unravel, for the very first time, the formation pathways of hydroxyacetone (CH3COCH2OH), methyl acetate (CH3COOCH3), and 3-hydroxypropanal (HCOCH2CH2OH), as well as their enol tautomers within mixed ices of methanol (CH3OH) and acetaldehyde (CH3CHO) analogous to interstellar ices in the ISM exposed to ionizing radiation at ultralow temperatures of 5 K. Exploiting photoionization reflectron time-of-flight mass spectrometry (PI-ReToF-MS) and isotopically labeled ices, the reaction products were selectively photoionized allowing for isomer discrimination during the temperature-programmed desorption phase. Based on the distinct mass-to-charge ratios and ionization energies of the identified species, we reveal the formation pathways of hydroxyacetone (CH3COCH2OH), methyl acetate (CH3COOCH3), and 3-hydroxypropanal (HCOCH2CH2OH) via radical-radical recombination reactions and of their enol tautomers (prop-1-ene-1,2-diol (CH3C(OH)CHOH), prop-2-ene-1,2-diol (CH2C(OH)CH2OH), 1-methoxyethen-1-ol (CH3OC(OH)CH2) and prop-1-ene-1,3-diol (HOCH2CHCHOH)) via keto-enol tautomerization. To the best of our knowledge, 1-methoxyethen-1-ol (CH3OC(OH)CH2) and prop-1-ene-1,3-diol (HOCH2CHCHOH) are experimentally identified for the first time. Our findings help to constrain the formation mechanism of hydroxyacetone and methyl acetate detected within star-forming regions and suggest that the hitherto astronomically unobserved isomer 3-hydroxypropanal and its enol tautomers represent promising candidates for future astronomical searches. These enol tautomers may contribute to the molecular synthesis of biologically relevant molecules in deep space due to their nucleophilic character and high reactivity.
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Affiliation(s)
- Jia Wang
- W. M. Keck Research Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA. .,Department of Chemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA
| | - Joshua H Marks
- W. M. Keck Research Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA. .,Department of Chemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA
| | - Andrew M Turner
- W. M. Keck Research Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA. .,Department of Chemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA
| | - Anatoliy A Nikolayev
- Lebedev Physical Institute, Samara 443011, Russia.,Samara National Research University, Samara 443086, Russia
| | | | - Alexander M Mebel
- Department of Chemistry and Biochemistry, Florida International University, Miami, Florida 33199, USA
| | - Ralf I Kaiser
- W. M. Keck Research Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA. .,Department of Chemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA
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10
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Wang J, Kleimeier NF, Johnson RN, Gozem S, Abplanalp MJ, Turner AM, Marks JH, Kaiser RI. Photochemically triggered cheletropic formation of cyclopropenone (c-C 3H 2O) from carbon monoxide and electronically excited acetylene. Phys Chem Chem Phys 2022; 24:17449-17461. [PMID: 35713004 DOI: 10.1039/d2cp01978g] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
For more than half a century, pericyclic reactions have played an important role in advancing our fundamental understanding of cycloadditions, sigmatropic shifts, group transfer reactions, and electrocyclization reactions. However, the fundamental mechanisms of photochemically activated cheletropic reactions have remained contentious. Here we report on the simplest cheletropic reaction: the [2+1] addition of ground state 18O-carbon monoxide (C18O, X1Σ+) to D2-acetylene (C2D2) photochemically excited to the first excited triplet (T1), second excited triplet (T2), and first excited singlet state (S1) at 5 K, leading to the formation of D2-18O-cyclopropenone (c-C3D218O). Supported by quantum-chemical calculations, our investigation provides persuasive testimony on stepwise cheletropic reaction pathways to cyclopropenone via excited state dynamics involving the T2 (non-adiabatic) and S1 state (adiabatic) of acetylene at 5 K, while the T1 state energetically favors an intermediate structure that directly dissociates after relaxing to the ground state. The agreement between experiments in low temperature ices and the excited state calculations signifies how photolysis experiments coupled with theoretical calculations can untangle polyatomic reactions with relevance to fundamental physical organic chemistry at the molecular level, thus affording a versatile strategy to unravel exotic non-equilibrium chemistries in cyclic, aromatic organics. Distinct from traditional radical-radical pathways leading to organic molecules on ice-coated interstellar nanoparticles (interstellar grains) in cold molecular clouds and star-forming regions, the photolytic formation of cyclopropenone as presented changes the perception of how we explain the formation of complex organics in the interstellar medium eventually leading to the molecular precursors of biorelevant molecules.
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Affiliation(s)
- Jia Wang
- Department of Chemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA. .,W. M. Keck Research Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA
| | - N Fabian Kleimeier
- Department of Chemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA. .,W. M. Keck Research Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA
| | - Rebecca N Johnson
- Department of Chemistry, Georgia State University, Atlanta, GA 30302, USA.
| | - Samer Gozem
- Department of Chemistry, Georgia State University, Atlanta, GA 30302, USA.
| | - Matthew J Abplanalp
- Department of Chemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA. .,W. M. Keck Research Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA
| | - Andrew M Turner
- Department of Chemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA. .,W. M. Keck Research Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA
| | - Joshua H Marks
- Department of Chemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA. .,W. M. Keck Research Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA
| | - Ralf I Kaiser
- Department of Chemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA. .,W. M. Keck Research Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA
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11
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Dang M, Liu R, Dong F, Liu B, Hou K. Vacuum ultraviolet photoionization on-line mass spectrometry: instrumentation developments and applications. Trends Analyt Chem 2022. [DOI: 10.1016/j.trac.2022.116542] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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12
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Kleimeier NF, Eckhardt AK, Kaiser RI. Identification of Glycolaldehyde Enol (HOHC═CHOH) in Interstellar Analogue Ices. J Am Chem Soc 2021; 143:14009-14018. [PMID: 34407613 DOI: 10.1021/jacs.1c07978] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
Glycolaldehyde is considered the entry point in the aqueous prebiotic formose (Butlerow) reaction although it mainly exists in its unreactive hydrated form in aqueous solution. The characterization of the more reactive nucleophilic enol form under interstellar conditions has remained elusive to date. Here we report on the identification of glycolaldehyde enol (1,2-ethenediol, HOHC═CHOH) in low temperature methanol-bearing ices at temperatures as low as 5 K. Exploiting isotope labeling and isomer-selective photoionization coupled with reflectron time-of-flight mass spectrometry, our results unravel distinct reaction pathways to 1,2-ethenediol, thus demonstrating the kinetic stability, availability for prebiotic sugar formation, and potential detectability in deep space.
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Affiliation(s)
- N Fabian Kleimeier
- Department of Chemistry, University of Hawaii at Ma̅noa, Honolulu, Hawaii 96822, United States.,W. M. Keck Laboratory in Astrochemistry, University of Hawaii at Ma̅noa, Honolulu, Hawaii 96822, United States
| | - André K Eckhardt
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - Ralf I Kaiser
- Department of Chemistry, University of Hawaii at Ma̅noa, Honolulu, Hawaii 96822, United States.,W. M. Keck Laboratory in Astrochemistry, University of Hawaii at Ma̅noa, Honolulu, Hawaii 96822, United States
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13
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Molnar BT, Shelley JT. MODERN PLASMA-BASED DESORPTION/IONIZATION: FROM ATOMS AND MOLECULES TO CHEMICAL SYNTHESIS. MASS SPECTROMETRY REVIEWS 2021; 40:609-627. [PMID: 32770688 DOI: 10.1002/mas.21645] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/11/2019] [Revised: 02/05/2020] [Accepted: 07/07/2020] [Indexed: 06/11/2023]
Abstract
Since the first mass spectrometry (MS) experiments were conducted by Thomson and Aston, plasmas have been used as ionization sources. Historically, plasma ion sources were used for these experiments because they were one of the few known sources of gas-phase ions at the time and they were relatively simple to setup and operate. Since then, developments in plasma ionization have continued to inform and motivate advances in other areas of MS. For example, plasma-desorption MS demonstrated ionization of large peptides and polymers more than 10 years before the first descriptions of electrospray ionization (ESI) and matrix-assisted laser desorption/ionization (MALDI). As a result, significant effort was placed on development of ionization approaches, mass analysis, and detection approaches for very large molecules: even before the advent of ESI and MALDI. Since then, new analytical challenges and opportunities in plasma ionization have arisen. In this review, the emerging trends in plasma-based ionization for several areas of MS will be discussed, including molecular ionization, elemental ionization, hybrid elemental and molecular ion sources, and unique chemical transformations. © 2020 John Wiley & Sons Ltd. Mass Spec Rev.
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Affiliation(s)
- Brian T Molnar
- Department of Chemistry and Chemical Biology, Rensselaer Polytechnic Institute, 110 8th Street, Troy, NY, 12180
| | - Jacob T Shelley
- Department of Chemistry and Chemical Biology, Rensselaer Polytechnic Institute, 110 8th Street, Troy, NY, 12180
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14
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Huang J, Huang C, Wu X, Hou Q, Tian G, Yang J, Zhang F. Combined experimental and theoretical study on photoionization cross sections of benzonitrile and o/m/p-cyanotoluene. J Chem Phys 2021; 154:244301. [PMID: 34241365 DOI: 10.1063/5.0053119] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Photoionization cross sections (PICSs) for the products of the reaction from CN with toluene, including benzonitrile and o/m/p-cyanotoluene, were obtained at photon energies ranging from ionization thresholds to 14 eV by tunable synchrotron vacuum ultraviolet photoionization mass spectrometry (SVUV-PIMS). Theoretical calculations based on the frozen-core Hartree-Fock approximation and Franck-Condon simulations were carried out to cross-verify the measured PICS. The results show that the photoionization cross sections of benzonitrile and cyanotoluene isomers are similar. The generalized charge decomposition analysis was used to investigate the components of the highest occupied molecular orbital (HOMO) and HOMO-1. It was found that the HOMO and HOMO-1 of benzonitrile and cyanotoluene isomers are dominated by the features of the benzene ring, indicating that the substitution of CN and methyl has a minor influence on the PICS of the studied molecules. The reported PICS on benzonitrile and cyanotoluene isomers in the present work could contribute to the near-threshold PIMS experiments and determine the ionization and dissociation rates in interstellar space for these crucial species. The theoretical analysis on characteristics of molecular orbitals provides clues to estimating the PICS of similar substituted aromatic compounds.
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Affiliation(s)
- Jiabin Huang
- Hefei National Laboratory for Physical Sciences at the Microscale, University of Science and Technology of China, Hefei, Anhui 230026, People's Republic of China
| | - Can Huang
- Chair of Technical Thermodynamics, RWTH Aachen University, 52062 Aachen, Germany
| | - Xiaoqing Wu
- Hefei National Laboratory for Physical Sciences at the Microscale, University of Science and Technology of China, Hefei, Anhui 230026, People's Republic of China
| | - Qifeng Hou
- Hefei National Laboratory for Physical Sciences at the Microscale, University of Science and Technology of China, Hefei, Anhui 230026, People's Republic of China
| | - Guangjun Tian
- Key Laboratory for Microstructural Material Physics of Hebei Province, School of Science, Yanshan University, Qinhuangdao 066004, People's Republic of China
| | - Jiuzhong Yang
- National Synchrotron Radiation Laboratory, University of Science and Technology of China, Hefei, Anhui 230029, People's Republic of China
| | - Feng Zhang
- Hefei National Laboratory for Physical Sciences at the Microscale, University of Science and Technology of China, Hefei, Anhui 230026, People's Republic of China
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15
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Studying Interfacial Dark Reactions of Glyoxal and Hydrogen Peroxide Using Vacuum Ultraviolet Single Photon Ionization Mass Spectrometry. ATMOSPHERE 2021. [DOI: 10.3390/atmos12030338] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Aqueous secondary organic aerosol (aqSOA) formation from volatile and semivolatile organic compounds at the air–liquid interface is considered as an important source of fine particles in the atmosphere. However, due to the lack of in situ detecting techniques, the detailed interfacial reaction mechanism and dynamics still remain uncertain. In this study, synchrotron-based vacuum ultraviolet single-photon ionization mass spectrometry (VUV SPI-MS) was coupled with the System for Analysis at the Liquid Vacuum Interface (SALVI) to investigate glyoxal dark oxidation products at the aqueous surface. Mass spectral analysis and determination of appearance energies (AEs) suggest that the main products of glyoxal dark interfacial aging are carboxylic acid related oligomers. Furthermore, the VUV SPI-MS results were compared and validated against those of in situ liquid time-of-flight secondary ion mass spectrometry (ToF-SIMS). The reaction mechanisms of the dark glyoxal interfacial oxidation, obtained using two different approaches, indicate that differences in ionization and instrument operation principles could contribute to their abilities to detect different oligomers. Therefore, the mechanistic differences revealed between the VUV SPI-MS and ToF-SIMS indicate that more in situ and real-time techniques are needed to investigate the contribution of the air–liquid interfacial reactions leading to aqSOA formation.
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16
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Skomorowski W, Krylov AI. Feshbach–Fano approach for calculation of Auger decay rates using equation-of-motion coupled-cluster wave functions. II. Numerical examples and benchmarks. J Chem Phys 2021; 154:084125. [DOI: 10.1063/5.0036977] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022] Open
Affiliation(s)
- Wojciech Skomorowski
- Department of Chemistry, University of Southern California, Los Angeles, California 90089, USA
| | - Anna I. Krylov
- Department of Chemistry, University of Southern California, Los Angeles, California 90089, USA
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17
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Sui X, Xu B, Yao J, Kostko O, Ahmed M, Yu XY. New Insights into Secondary Organic Aerosol Formation at the Air-Liquid Interface. J Phys Chem Lett 2021; 12:324-329. [PMID: 33352051 DOI: 10.1021/acs.jpclett.0c03319] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Air-liquid interfacial processing of volatile organic compound photooxidation has been suggested as an important source of secondary organic aerosols. However, owing to the lack of techniques for studying the air-liquid interface, the detailed interfacial mechanism remains speculative. To obviate this, we enabled in situ synchrotron-based vacuum ultraviolet single photon ionization mass spectrometry using the system for analysis at the liquid-vacuum interface microreactor to study glyoxal photooxidation at the air-liquid interface. Determination of reaction intermediates and new oxidation products, including polymers and oligomers, by mass spectral analysis and appearance energy measurements has been reported for the first time. Furthermore, an expanded reaction mechanism of photooxidation and free radical induced reactions as a source of aqueous secondary organic aerosol formation is proposed. Single photon ionization can provide new insights into interfacial chemistry.
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Affiliation(s)
- Xiao Sui
- College of Geography and Environment, Shandong Normal University, Jinan, 250358, China
- Energy and Environment Directorate, Pacific Northwest National Laboratory, Richland, Washington 99354, United States
| | - Bo Xu
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California. 94720, United States
| | - Jenn Yao
- Energy and Environment Directorate, Pacific Northwest National Laboratory, Richland, Washington 99354, United States
| | - Oleg Kostko
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California. 94720, United States
| | - Musahid Ahmed
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California. 94720, United States
| | - Xiao-Ying Yu
- Energy and Environment Directorate, Pacific Northwest National Laboratory, Richland, Washington 99354, United States
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18
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Zhao L, Doddipatla S, Kaiser RI, Lu W, Kostko O, Ahmed M, Tuli LB, Morozov AN, Howlader AH, Wnuk SF, Mebel AM, Azyazov VN, Mohamed RK, Fischer FR. Gas-phase synthesis of corannulene – a molecular building block of fullerenes. Phys Chem Chem Phys 2021; 23:5740-5749. [DOI: 10.1039/d0cp06537d] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
Corannulene can be formed through molecular mass growth processes in circumstellar envelopes.
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19
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Imaging of Polar and Nonpolar Lipids Using Desorption Electrospray Ionization/Post-photoionization Mass Spectrometry. Methods Mol Biol 2021; 2306:285-298. [PMID: 33954954 DOI: 10.1007/978-1-0716-1410-5_19] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Desorption electrospray ionization mass spectrometry imaging (DESI-MSI) can record 2D distribution of polar lipids in tissue slices at ambient condition. However, sensitivity of DESI-MSI for nonpolar lipids is restricted by low ionization efficiency and severe ion suppression. Here, a compact post-photoionization assembly combined with DESI (DESI/PI) was developed for simultaneous imaging polar and nonpolar lipids in tissue sections by switching off/on a portable krypton lamp. Compared with DESI, higher signal intensities of nonpolar compounds could be detected with DESI/PI. We describe the fabrication, optimization, implementation, and data transformation for imaging both the polar and nonpolar lipids in mouse brain tissue using an Agilent 6224 Accurate-Mass TOF mass spectrometer. More than ten nonpolar lipids including cholesterol and GalCer lipids were detected by DESI/PI in the positive ion mode, compared with that by DESI. In the negative-ion mode, ion yields of DESI/PI for lipids (HexCer, PE, and PE-P) were also increased by several folds.
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20
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Demireva M, Au K, Sheps L. Direct time-resolved detection and quantification of key reactive intermediates in diethyl ether oxidation at T = 450-600 K. Phys Chem Chem Phys 2020; 22:24649-24661. [PMID: 33099590 DOI: 10.1039/d0cp03861j] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
High-pressure multiplexed photoionization mass spectrometry (MPIMS) with tunable vacuum ultraviolet (VUV) ionization radiation from the Lawrence Berkeley Labs Advanced Light Source is used to investigate the oxidation of diethyl ether (DEE). Kinetics and photoionization (PI) spectra are simultaneously measured for the species formed. Several stable products from DEE oxidation are identified and quantified using reference PI cross-sections. In addition, we directly detect and quantify three key chemical intermediates: peroxy (ROO˙), hydroperoxyalkyl peroxy (˙OOQOOH), and ketohydroperoxide (HOOP[double bond, length as m-dash]O, KHP). These intermediates undergo dissociative ionization (DI) into smaller fragments, making their identification by mass spectrometry challenging. With the aid of quantum chemical calculations, we identify the DI channels of these key chemical species and quantify their time-resolved concentrations from the overall carbon atom balance at T = 450 K and P = 7500 torr. This allows the determination of the absolute PI cross-sections of ROO˙, ˙OOQOOH, and KHP into each DI channel directly from experiment. The PI cross-sections in turn enable the quantification of ROO˙, ˙OOQOOH, and KHP from DEE oxidation over a range of experimental conditions that reveal the effects of pressure, O2 concentration, and temperature on the competition among radical decomposition and second O2 addition pathways.
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Affiliation(s)
- Maria Demireva
- Combustion Research Facility, Sandia National Laboratories, Livermore, California 94551, USA.
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21
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Wu X, Zhou X, Hemberger P, Bodi A. Conformers, electronic states, and diabolical conical intersections in the valence photoelectron spectroscopy of halocyclohexanes. J Chem Phys 2020; 153:054305. [DOI: 10.1063/5.0018293] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Xiangkun Wu
- Laboratory for Synchrotron Radiation and Femtochemistry, Paul Scherrer Institute, 5232 Villigen, Switzerland
- Hefei National Laboratory for Physical Sciences at the Microscale, Department of Chemical Physics, University of Science and Technology of China, Hefei 230026, China
| | - Xiaoguo Zhou
- Hefei National Laboratory for Physical Sciences at the Microscale, Department of Chemical Physics, University of Science and Technology of China, Hefei 230026, China
| | - Patrick Hemberger
- Laboratory for Synchrotron Radiation and Femtochemistry, Paul Scherrer Institute, 5232 Villigen, Switzerland
| | - Andras Bodi
- Laboratory for Synchrotron Radiation and Femtochemistry, Paul Scherrer Institute, 5232 Villigen, Switzerland
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22
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Pysanenko A, Pluhařová E, Vinklárek IS, Rakovský J, Poterya V, Kočišek J, Fárník M. Ion and radical chemistry in (H 2O 2) N clusters. Phys Chem Chem Phys 2020; 22:15312-15320. [PMID: 32627769 DOI: 10.1039/c9cp06817a] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We investigate the ionization induced chemistry of hydrogen peroxide in (H2O2)N clusters generated after the pickup of individual H2O2 molecules on large free ArM, M[combining macron]≈ 160, nanoparticles in molecular beams. Positive and negative ion mass spectra are recorded after an electron ionization of the clusters at energies 5-70 eV and after a slow electron attachment (below 4 eV), respectively. The spectra demonstrate that (H2O2)N clusters with N≥ 20 are formed on argon nanoparticles. This is the first experimental report on hydrogen peroxide clusters in molecular beams. The major negative cluster ion series (H2O2)nO2- indicates O2- ion formation. The dissociative electron attachment to H2O2 molecules in the gas phase yielded only OH- and O- (Nandi et al., Chem. Phys. Lett., 2003, 373, 454). These ions and the series containing them are much less abundant in the clusters. We propose a sequence of ion-molecule and radical reactions to explain the formation of O2-, HO2- and other ions observed in the negatively charged cluster ion series. Since hydrogen peroxide plays an important role in many areas of chemistry from the Earth's atmosphere to biological tissues, our study opens new horizons for experimental investigations of hydrogen peroxide chemistry in complex environments.
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Affiliation(s)
- Andriy Pysanenko
- J. Heyrovský Institute of Physical Chemistry, v.v.i., Czech Academy of Sciences, Dolejškova 2155/3, 182 23 Prague, Czech Republic.
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23
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Lu W, Metz RB, Troy TP, Kostko O, Ahmed M. Exciton energy transfer reveals spectral signatures of excited states in clusters. Phys Chem Chem Phys 2020; 22:14284-14292. [PMID: 32555897 DOI: 10.1039/d0cp02042g] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
Electronic excitation and concomitant energy transfer leading to Penning ionization in argon-acetylene clusters generated in a supersonic expansion are investigated with synchrotron-based photoionization mass spectrometry and electronic structure calculations. Spectral features in the photoionization efficiency of the mixed argon-acetylene clusters reveal a blue shift from the 2P1/2 and 2P3/2 excited states of atomic argon. Analysis of this feature suggests that excited states of argon clusters transfer energy to acetylene, resulting in its ionization and successive evaporation of argon. Theoretically calculated Arn (n = 2-6) cluster spectra are in excellent agreement with experimental observations, and provide insight into the structure and ionization dynamics of the clusters. A comparison between argon-acetylene and argon-water clusters reveals that argon solvates water better, allowing for higher-order excitons and Rydberg states to be populated. These results are explained by theoretical calculations of respective binding energies and structures.
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Affiliation(s)
- Wenchao Lu
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
| | - Ricardo B Metz
- Department of Chemistry, University of Massachusetts, Amherst, MA 01003, USA.
| | - Tyler P Troy
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
| | - Oleg Kostko
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
| | - Musahid Ahmed
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
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24
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Sarangi R, Vidal ML, Coriani S, Krylov AI. On the basis set selection for calculations of core-level states: different strategies to balance cost and accuracy. Mol Phys 2020. [DOI: 10.1080/00268976.2020.1769872] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
Affiliation(s)
- Ronit Sarangi
- Department of Chemistry, University of Southern California, Los Angeles, CA, USA
| | - Marta L. Vidal
- DTU Chemistry – Department of Chemistry, Technical University of Denmark, Lyngby, Denmark
| | - Sonia Coriani
- DTU Chemistry – Department of Chemistry, Technical University of Denmark, Lyngby, Denmark
| | - Anna I. Krylov
- Department of Chemistry, University of Southern California, Los Angeles, CA, USA
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25
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Singh SK, La Jeunesse J, Vuppuluri V, Son SF, Sun B, Chen Y, Chang AHH, Mebel AM, Kaiser RI. The Elusive Ketene (H
2
CCO) Channel in the Infrared Multiphoton Dissociation of Solid 1,3,5‐Trinitro‐1,3,5‐Triazinane (RDX). Chemphyschem 2020; 21:837-842. [DOI: 10.1002/cphc.201901202] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2019] [Revised: 02/18/2020] [Indexed: 11/05/2022]
Affiliation(s)
- Santosh K. Singh
- Department of Chemistry W. M. Keck Research Laboratory in AstrochemistryUniversity of Hawaii Honolulu HI 96822 HI USA
| | - Jesse La Jeunesse
- Department of Chemistry W. M. Keck Research Laboratory in AstrochemistryUniversity of Hawaii Honolulu HI 96822 HI USA
| | - Vasant Vuppuluri
- Mechanical Engineering Purdue Energetics Research CenterPurdue University West Lafayette IN 47907 USA
| | - Steven F. Son
- Mechanical Engineering Purdue Energetics Research CenterPurdue University West Lafayette IN 47907 USA
| | - Bing‐Jian Sun
- Department of ChemistryNational Dong Hwa University Shoufeng, Hualien 974 Taiwan
| | - Yue‐Lin Chen
- Department of ChemistryNational Dong Hwa University Shoufeng, Hualien 974 Taiwan
| | - Agnes H. H. Chang
- Department of ChemistryNational Dong Hwa University Shoufeng, Hualien 974 Taiwan
| | - Alexander M. Mebel
- Department of Chemistry and BiochemistryFlorida International University Miami, Florida 33199 USA
| | - Ralf I. Kaiser
- Department of Chemistry W. M. Keck Research Laboratory in AstrochemistryUniversity of Hawaii Honolulu HI 96822 HI USA
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26
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Wu X, Zhou X, Hemberger P, Bodi A. A guinea pig for conformer selectivity and mechanistic insights into dissociative ionization by photoelectron photoion coincidence: fluorocyclohexane. Phys Chem Chem Phys 2020; 22:2351-2360. [PMID: 31934711 DOI: 10.1039/c9cp05617c] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We studied fluorocyclohexane (C6H11F, FC6) by double imaging photoelectron photoion coincidence spectroscopy in the 9.90-13.90 eV photon energy range. The photoelectron spectrum can identify species isomer and, in this case, even conformer selectively. Ab initio results indicated that the axial conformer has two, close-lying cation electronic states. With the help of Franck-Condon simulations of the vibrational fine structure, we determined the origin of three transitions, (i) axial FC6 → axial FC6+ of C1 symmetry (X[combining tilde]+, A'' in CS), (ii) equatorial FC6 → equatorial FC6+ of C1 symmetry (X[combining tilde]+, A'' in CS), and (iii) axial FC6 → A' axial FC6+ of CS symmetry (Ã+) as 10.12 ± 0.01, 10.15 ± 0.01 and 10.15 ± 0.02 eV, respectively. At slightly higher energies, the FC6 cation starts fragmenting by HF loss (E0 = 10.60 eV), followed by sequential CH3 (E0 = 10.71 eV) or C2H4 (E0 = 11.06 eV) loss. Surprisingly, the methyl-loss step has an effective barrier of only 0.11 eV, and yet it is a slow process at threshold. Based on the statistical model, this is explained by isomerization and stabilization of the C6H10+ intermediate. The highest energy channel observed, vinyl fluoride (C2H3F) loss yielding C4H8+ appears in the breakdown diagram at 12 eV, which agrees with the computed threshold to cyclobutane cation formation. However, the model predicted a ca. 1 eV competitive shift for this parallel channel, i.e., an E0 = 11.23 eV. This led us to explore the potential energy surface to find a lower-lying fragmentation channel including H-transfer steps. Rate constant measurements and statistical modeling thus yield fundamental insights into the reaction mechanism beyond what is immediately seen in the mass spectra.
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Affiliation(s)
- Xiangkun Wu
- Laboratory for Synchrotron Radiation and Femtochemistry, Paul Scherrer Institute, 5232 Villigen, Switzerland. and Hefei National Laboratory for Physical Sciences at the Microscale, Department of Chemical Physics, University of Science and Technology of China, Hefei 230026, China.
| | - Xiaoguo Zhou
- Hefei National Laboratory for Physical Sciences at the Microscale, Department of Chemical Physics, University of Science and Technology of China, Hefei 230026, China.
| | - Patrick Hemberger
- Laboratory for Synchrotron Radiation and Femtochemistry, Paul Scherrer Institute, 5232 Villigen, Switzerland.
| | - Andras Bodi
- Laboratory for Synchrotron Radiation and Femtochemistry, Paul Scherrer Institute, 5232 Villigen, Switzerland.
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27
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Ahmed M, Kostko O. From atoms to aerosols: probing clusters and nanoparticles with synchrotron based mass spectrometry and X-ray spectroscopy. Phys Chem Chem Phys 2020; 22:2713-2737. [DOI: 10.1039/c9cp05802h] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
Synchrotron radiation provides insight into spectroscopy and dynamics in clusters and nanoparticles.
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Affiliation(s)
- Musahid Ahmed
- Chemical Sciences Division
- Lawrence Berkeley National Laboratory
- Berkeley
- USA
| | - Oleg Kostko
- Chemical Sciences Division
- Lawrence Berkeley National Laboratory
- Berkeley
- USA
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28
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Vidal ML, Krylov AI, Coriani S. Dyson orbitals within the fc-CVS-EOM-CCSD framework: theory and application to X-ray photoelectron spectroscopy of ground and excited states. Phys Chem Chem Phys 2020; 22:2693-2703. [DOI: 10.1039/c9cp03695d] [Citation(s) in RCA: 35] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Ionization energies and Dyson orbitals within frozen-core core–valence separated equation-of-motion coupled cluster singles and doubles (fc-CVS-EOM-CCSD) enable efficient and reliable calculations of standard XPS and of UV-pump/XPS probe spectra.
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Affiliation(s)
- Marta L. Vidal
- DTU Chemistry – Department of Chemistry
- Technical University of Denmark
- Kongens Lyngby
- Denmark
| | - Anna I. Krylov
- Department of Chemistry
- University of Southern California
- Los Angeles
- USA
| | - Sonia Coriani
- DTU Chemistry – Department of Chemistry
- Technical University of Denmark
- Kongens Lyngby
- Denmark
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29
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Nanda KD, Vidal ML, Faber R, Coriani S, Krylov AI. How to stay out of trouble in RIXS calculations within equation-of-motion coupled-cluster damped response theory? Safe hitchhiking in the excitation manifold by means of core–valence separation. Phys Chem Chem Phys 2020; 22:2629-2641. [DOI: 10.1039/c9cp03688a] [Citation(s) in RCA: 34] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
We present a novel approach with robust convergence of the response equations for computing resonant inelastic X-ray scattering (RIXS) cross sections within the equation-of-motion coupled-cluster (EOM-CC) framework.
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Affiliation(s)
- Kaushik D. Nanda
- Department of Chemistry
- University of Southern California
- Los Angeles
- USA
| | - Marta L. Vidal
- DTU Chemistry – Department of Chemistry
- Technical University of Denmark
- DK-2800
- Denmark
| | - Rasmus Faber
- DTU Chemistry – Department of Chemistry
- Technical University of Denmark
- DK-2800
- Denmark
| | - Sonia Coriani
- DTU Chemistry – Department of Chemistry
- Technical University of Denmark
- DK-2800
- Denmark
| | - Anna I. Krylov
- Department of Chemistry
- University of Southern California
- Los Angeles
- USA
- The Hamburg Centre for Ultrafast Imaging
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30
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Wu JY, Cheng PY. Ultrafast Protonation of an Amide: Photoionization-Induced Proton Transfer in Phenol-Dimethylformamide Complex Cation. J Phys Chem A 2019; 123:10700-10713. [DOI: 10.1021/acs.jpca.9b09651] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Affiliation(s)
- Jun-Yi Wu
- Department of Chemistry, National Tsing Hua University, Hsinchu 30043, Taiwan, R.
O. C
| | - Po-Yuan Cheng
- Department of Chemistry, National Tsing Hua University, Hsinchu 30043, Taiwan, R.
O. C
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31
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Sheps L, Antonov I, Au K. Sensitive Mass Spectrometer for Time-Resolved Gas-Phase Chemistry Studies at High Pressures. J Phys Chem A 2019; 123:10804-10814. [DOI: 10.1021/acs.jpca.9b08393] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Leonid Sheps
- Combustion Research Facility, Sandia National Laboratories, Livermore, California 94551, United States
| | - Ivan Antonov
- Combustion Research Facility, Sandia National Laboratories, Livermore, California 94551, United States
| | - Kendrew Au
- Combustion Research Facility, Sandia National Laboratories, Livermore, California 94551, United States
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32
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Hanley L, Wickramasinghe R, Yung YP. Laser Desorption Combined with Laser Postionization for Mass Spectrometry. ANNUAL REVIEW OF ANALYTICAL CHEMISTRY (PALO ALTO, CALIF.) 2019; 12:225-245. [PMID: 30786215 DOI: 10.1146/annurev-anchem-061318-115447] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Lasers with pulse lengths from nanoseconds to femtoseconds and wavelengths from the mid-infrared to extreme ultraviolet (UV) have been used for desorption or ablation in mass spectrometry. Such laser sampling can often benefit from the addition of a second laser for postionization of neutrals. The advantages offered by laser postionization include the ability to forego matrix application, high lateral resolution, decoupling of ionization from desorption, improved analysis of electrically insulating samples, and potential for high sensitivity and depth profiling while minimizing differential detection. A description of postionization by vacuum UV radiation is followed by a consideration of multiphoton, short pulse, and other postionization strategies. The impacts of laser pulse length and wavelength are considered for laser desorption or laser ablation at low pressures. Atomic and molecular analysis via direct laser desorption/ionization using near-infrared ultrashort pulses is described. Finally, the postionization of clusters, the role of gaseous collisions, sampling at ambient pressure, atmospheric pressure photoionization, and the addition of UV postionization to MALDI are considered.
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Affiliation(s)
- Luke Hanley
- Department of Chemistry, University of Illinois at Chicago, Chicago, Illinois 60607, USA;
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Vidal ML, Feng X, Epifanovsky E, Krylov AI, Coriani S. New and Efficient Equation-of-Motion Coupled-Cluster Framework for Core-Excited and Core-Ionized States. J Chem Theory Comput 2019; 15:3117-3133. [PMID: 30964297 DOI: 10.1021/acs.jctc.9b00039] [Citation(s) in RCA: 135] [Impact Index Per Article: 27.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
We present a fully analytical implementation of the core-valence separation (CVS) scheme for the equation-of-motion (EOM) coupled-cluster singles and doubles (CCSD) method for calculations of core-level states. Inspired by the CVS idea as originally formulated by Cederbaum, Domcke, and Schirmer, pure valence excitations are excluded from the EOM target space and the frozen-core approximation is imposed on the reference-state amplitudes and multipliers. This yields an efficient, robust, practical, and numerically balanced EOM-CCSD framework for calculations of excitation and ionization energies as well as state and transition properties (e.g., spectral intensities, natural transition, and Dyson orbitals) from both the ground and excited states. The errors in absolute excitation/ionization energies relative to the experimental reference data are on the order of 0.2-3.0 eV, depending on the K-edge considered and on the basis set used, and the shifts are systematic for each edge. Compared to a previously proposed CVS scheme where CVS was applied as a posteriori projection only during the solution of the EOM eigenvalue equations, the new scheme is computationally cheaper. It also achieves better cancellation of errors, yielding similar spectral profiles but with absolute core excitation and ionization energies that are systematically closer to the corresponding experimental data. Among the presented results are calculations of transient-state X-ray absorption spectra, relevant for interpretation of UV-pump/X-ray probe experiments.
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Affiliation(s)
- Marta L Vidal
- DTU Chemistry, Department of Chemistry , Technical University of Denmark , Kongens Lyngby DK-2800 , Denmark
| | - Xintian Feng
- Department of Chemistry , University of California , Berkeley , California 94720 , United States.,Q-Chem Incorporated , 6601 Owens Drive, Suite 105 , Pleasanton , California 94588 , United States
| | - Evgeny Epifanovsky
- Q-Chem Incorporated , 6601 Owens Drive, Suite 105 , Pleasanton , California 94588 , United States
| | - Anna I Krylov
- Department of Chemistry , University of Southern California , Los Angeles , California 90089-0482 , United States
| | - Sonia Coriani
- DTU Chemistry, Department of Chemistry , Technical University of Denmark , Kongens Lyngby DK-2800 , Denmark
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Liu C, Qi K, Yao L, Xiong Y, Zhang X, Zang J, Tian C, Xu M, Yang J, Lin Z, Lv Y, Xiong W, Pan Y. Imaging of Polar and Nonpolar Species Using Compact Desorption Electrospray Ionization/Postphotoionization Mass Spectrometry. Anal Chem 2019; 91:6616-6623. [PMID: 30907581 DOI: 10.1021/acs.analchem.9b00520] [Citation(s) in RCA: 28] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
Desorption electrospray ionization (DESI) mass spectrometry imaging (MSI) can simultaneously record the 2D distribution of polar biomolecules in tissue slices at ambient conditions. However, sensitivity of DESI-MSI for nonpolar compounds is restricted by low ionization efficiency and strong ion suppression. In this study, a compact postphotoionization assembly combined with DESI (DESI/PI) was developed for imaging polar and nonpolar molecules in tissue sections by switching off/on a portable krypton lamp. Compared with DESI, higher signal intensities of nonpolar compounds could be detected with DESI/PI. To further increase the ionization efficiency and transport of charged ions of DESI/PI, the desorption solvent composition and gas flow in the ionization tube were optimized. In mouse brain tissue, more than 2 orders of magnitude higher signal intensities for certain neutral biomolecules like creatine, cholesterol, and GalCer lipids were obtained by DESI/PI in the positive ion mode, compared with that of DESI. In the negative ion mode, ion yields of DESI/PI for glutamine and some lipids (HexCer, PE, and PE-O) were also increased by several-fold. Moreover, nonpolar constituents in plant tissue, such as catechins in leaf shoots of tea, could also be visualized by DESI/PI. Our results indicate that DESI/PI can expand the application field of DESI to nonpolar molecules, which is important for comprehensive imaging of biomolecules in biological tissues with moderate spatial resolution at ambient conditions.
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Affiliation(s)
- Chengyuan Liu
- National Synchrotron Radiation Laboratory , University of Science and Technology of China , Hefei 230029 , China
| | - Keke Qi
- National Synchrotron Radiation Laboratory , University of Science and Technology of China , Hefei 230029 , China
| | - Lei Yao
- Hefei National Laboratory for Physical Sciences at the Microscale, School of Life Sciences , University of Science and Technology of China , Hefei 230026 , China
| | - Ying Xiong
- Hefei National Laboratory for Physical Sciences at the Microscale, School of Life Sciences , University of Science and Technology of China , Hefei 230026 , China
| | - Xuan Zhang
- Hefei National Laboratory for Physical Sciences at the Microscale, School of Life Sciences , University of Science and Technology of China , Hefei 230026 , China
| | - Jianye Zang
- Hefei National Laboratory for Physical Sciences at the Microscale, School of Life Sciences , University of Science and Technology of China , Hefei 230026 , China
| | - Changlin Tian
- Hefei National Laboratory for Physical Sciences at the Microscale, School of Life Sciences , University of Science and Technology of China , Hefei 230026 , China
| | - Minggao Xu
- National Synchrotron Radiation Laboratory , University of Science and Technology of China , Hefei 230029 , China
| | - Jiuzhong Yang
- National Synchrotron Radiation Laboratory , University of Science and Technology of China , Hefei 230029 , China
| | - Zhenkun Lin
- Center of Scientific Research , The Second Affiliated Hospital and Yuying Children's Hospital of Wenzhou Medical University , Wenzhou 325027 , China
| | - Yongmei Lv
- Department of Dermatology , The Second Affiliated Hospital of Anhui Medical University , Hefei 230601 , China
| | - Wei Xiong
- Hefei National Laboratory for Physical Sciences at the Microscale, School of Life Sciences , University of Science and Technology of China , Hefei 230026 , China
| | - Yang Pan
- National Synchrotron Radiation Laboratory , University of Science and Technology of China , Hefei 230029 , China
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Metz RB, Altinay G, Kostko O, Ahmed M. Probing Reactivity of Gold Atoms with Acetylene and Ethylene with VUV Photoionization Mass Spectrometry and Ab Initio Studies. J Phys Chem A 2019; 123:2194-2202. [DOI: 10.1021/acs.jpca.8b12560] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Ricardo B. Metz
- Department of Chemistry, University of Massachusetts Amherst, Amherst, Massachusetts 01003, United States
| | - Gokhan Altinay
- Department of Chemistry, University of Massachusetts Amherst, Amherst, Massachusetts 01003, United States
| | - Oleg Kostko
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Musahid Ahmed
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
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36
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Wu XK, Tang XF, Zhou XG, Liu SL. Dissociation dynamics of energy-selected ions using threshold photoelectron-photoion coincidence velocity imaging. CHINESE J CHEM PHYS 2019. [DOI: 10.1063/1674-0068/cjcp1811257] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
Affiliation(s)
- Xiang-kun Wu
- Hefei National Laboratory for Physical Sciences at the Microscale, iChEM (Collaborative Innovation Center of Chemistry for Energy Materials), Department of Chemical Physics, University of Science and Technology of China, Hefei 230026, China
| | - Xiao-feng Tang
- Laboratory of Atmospheric Physico-Chemistry, Anhui Institute of Optics and Fine Mechanics, Chinese Academy of Sciences, Hefei 230031, China
| | - Xiao-guo Zhou
- Hefei National Laboratory for Physical Sciences at the Microscale, iChEM (Collaborative Innovation Center of Chemistry for Energy Materials), Department of Chemical Physics, University of Science and Technology of China, Hefei 230026, China
| | - Shi-lin Liu
- Hefei National Laboratory for Physical Sciences at the Microscale, iChEM (Collaborative Innovation Center of Chemistry for Energy Materials), Department of Chemical Physics, University of Science and Technology of China, Hefei 230026, China
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Gerlach M, Bodi A, Hemberger P. Metamorphic meta isomer: carbon dioxide and ketenes are formed via retro-Diels–Alder reactions in the decomposition of meta-benzenediol. Phys Chem Chem Phys 2019; 21:19480-19487. [DOI: 10.1039/c9cp03519b] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Deoxygenation of the lignin model compound resorcinol was investigated using VUV synchrotron radiation: Formation of two reactive ketenes and decarboxylation are the dominating pathways, much different from the other two benzenediol isomers.
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Affiliation(s)
- Marius Gerlach
- Laboratory for Synchrotron Radiation and Femtochemistry
- Paul Scherrer Institute
- CH-5234 Villigen PSI
- Switzerland
| | - Andras Bodi
- Laboratory for Synchrotron Radiation and Femtochemistry
- Paul Scherrer Institute
- CH-5234 Villigen PSI
- Switzerland
| | - Patrick Hemberger
- Laboratory for Synchrotron Radiation and Femtochemistry
- Paul Scherrer Institute
- CH-5234 Villigen PSI
- Switzerland
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38
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Komorek R, Xu B, Yao J, Ablikim U, Troy TP, Kostko O, Ahmed M, Yu XY. Enabling liquid vapor analysis using synchrotron VUV single photon ionization mass spectrometry with a microfluidic interface. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2018; 89:115105. [PMID: 30501361 DOI: 10.1063/1.5048315] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/12/2018] [Accepted: 10/19/2018] [Indexed: 06/09/2023]
Abstract
Vacuum ultraviolet (VUV) single photon ionization mass spectrometry (SPI-MS) is a vacuum-based technique typically used for the analysis of gas phase and solid samples, but not for liquids due to the challenge in introducing volatile liquids in a vacuum. Here we present the first demonstration of in situ liquid analysis by integrating the System for Analysis at the Liquid Vacuum Interface (SALVI) microfluidic reactor into VUV SPI-MS. Four representative volatile organic compound (VOC) solutions were used to illustrate the feasibility of liquid analysis. Our results show the accurate mass identification of the VOC molecules and the reliable determination of appearance energy that is consistent with ionization energy for gaseous species in the literature as reported. This work validates that the vacuum-compatible SALVI microfluidic interface can be utilized at the synchrotron beamline and enable the in situ study of gas-phase molecules evaporating off the surface of a liquid, which holds importance in the study of condensed matter chemistry.
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Affiliation(s)
- R Komorek
- Atmospheric Sciences and Global Change Division, PNNL, Richland, Washington 99354, USA
| | - B Xu
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | - J Yao
- Atmospheric Sciences and Global Change Division, PNNL, Richland, Washington 99354, USA
| | - U Ablikim
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | - T P Troy
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | - O Kostko
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | - M Ahmed
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | - X Y Yu
- Atmospheric Sciences and Global Change Division, PNNL, Richland, Washington 99354, USA
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Turner AM, Bergantini A, Abplanalp MJ, Zhu C, Góbi S, Sun BJ, Chao KH, Chang AHH, Meinert C, Kaiser RI. An interstellar synthesis of phosphorus oxoacids. Nat Commun 2018; 9:3851. [PMID: 30242164 PMCID: PMC6155066 DOI: 10.1038/s41467-018-06415-7] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2018] [Accepted: 08/29/2018] [Indexed: 11/09/2022] Open
Abstract
Phosphorus signifies an essential element in molecular biology, yet given the limited solubility of phosphates on early Earth, alternative sources like meteoritic phosphides have been proposed to incorporate phosphorus into biomolecules under prebiotic terrestrial conditions. Here, we report on a previously overlooked source of prebiotic phosphorus from interstellar phosphine (PH3) that produces key phosphorus oxoacids-phosphoric acid (H3PO4), phosphonic acid (H3PO3), and pyrophosphoric acid (H4P2O7)-in interstellar analog ices exposed to ionizing radiation at temperatures as low as 5 K. Since the processed material of molecular clouds eventually enters circumstellar disks and is partially incorporated into planetesimals like proto Earth, an understanding of the facile synthesis of oxoacids is essential to untangle the origin of water-soluble prebiotic phosphorus compounds and how they might have been incorporated into organisms not only on Earth, but potentially in our universe as well.
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Affiliation(s)
- Andrew M Turner
- Department of Chemistry, University of Hawaii at Manoa, Honolulu, HI, 96822, USA
- W.M. Keck Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, HI, 96822, USA
| | - Alexandre Bergantini
- Department of Chemistry, University of Hawaii at Manoa, Honolulu, HI, 96822, USA
- W.M. Keck Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, HI, 96822, USA
| | - Matthew J Abplanalp
- Department of Chemistry, University of Hawaii at Manoa, Honolulu, HI, 96822, USA
- W.M. Keck Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, HI, 96822, USA
| | - Cheng Zhu
- Department of Chemistry, University of Hawaii at Manoa, Honolulu, HI, 96822, USA
- W.M. Keck Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, HI, 96822, USA
| | - Sándor Góbi
- Department of Chemistry, University of Hawaii at Manoa, Honolulu, HI, 96822, USA
- W.M. Keck Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, HI, 96822, USA
| | - Bing-Jian Sun
- Department of Chemistry, National Dong Hwa University, Shoufeng, 974, Hualien, Taiwan
| | - Kang-Heng Chao
- Department of Chemistry, National Dong Hwa University, Shoufeng, 974, Hualien, Taiwan
| | - Agnes H H Chang
- Department of Chemistry, National Dong Hwa University, Shoufeng, 974, Hualien, Taiwan
| | - Cornelia Meinert
- Université Côte d'Azur, CNRS, Institut de Chimie de Nice, Nice, France
| | - Ralf I Kaiser
- Department of Chemistry, University of Hawaii at Manoa, Honolulu, HI, 96822, USA.
- W.M. Keck Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, HI, 96822, USA.
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40
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Shen CC, Tsai TT, Wu JY, Ho JW, Chen YW, Cheng PY. Watching proton transfer in real time: Ultrafast photoionization-induced proton transfer in phenol-ammonia complex cation. J Chem Phys 2017; 147:164302. [PMID: 29096460 DOI: 10.1063/1.5001375] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022] Open
Abstract
In this paper, we give a full account of our previous work [C. C. Shen et al., J. Chem. Phys. 141, 171103 (2014)] on the study of an ultrafast photoionization-induced proton transfer (PT) reaction in the phenol-ammonia (PhOH-NH3) complex using ultrafast time-resolved ion photofragmentation spectroscopy implemented by the photoionization-photofragmentation pump-probe detection scheme. Neutral PhOH-NH3 complexes prepared in a free jet are photoionized by femtosecond 1 + 1 resonance-enhanced multiphoton ionization via the S1 state. The evolving cations are then probed by delayed pulses that result in ion fragmentation, and the ionic dynamics is followed by measuring the parent-ion depletion as a function of the pump-probe delay time. By comparing with systems in which PT is not feasible and the steady-state ion photofragmentation spectra, we concluded that the observed temporal evolutions of the transient ion photofragmentation spectra are consistent with an intracomplex PT reaction after photoionization from the initial non-PT to the final PT structures. Our experiments revealed that PT in [PhOH-NH3]+ cation proceeds in two distinct steps: an initial impulsive wave-packet motion in ∼70 fs followed by a slower relaxation of about 1 ps that stabilizes the system into the final PT configuration. These results indicate that for a barrierless PT system, even though the initial PT motions are impulsive and ultrafast, the time scale to complete the reaction can be much slower and is determined by the rate of energy dissipation into other modes.
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Affiliation(s)
- Ching-Chi Shen
- Department of Chemistry, National Tsing Hua University, Hsinchu, Taiwan 30043, Republic of China
| | - Tsung-Ting Tsai
- Department of Chemistry, National Tsing Hua University, Hsinchu, Taiwan 30043, Republic of China
| | - Jun-Yi Wu
- Department of Chemistry, National Tsing Hua University, Hsinchu, Taiwan 30043, Republic of China
| | - Jr-Wei Ho
- Department of Chemistry, National Tsing Hua University, Hsinchu, Taiwan 30043, Republic of China
| | - Yi-Wei Chen
- Department of Chemistry, National Tsing Hua University, Hsinchu, Taiwan 30043, Republic of China
| | - Po-Yuan Cheng
- Department of Chemistry, National Tsing Hua University, Hsinchu, Taiwan 30043, Republic of China
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Pastoors JIM, Bodi A, Hemberger P, Bouwman J. Dissociative Ionization and Thermal Decomposition of Cyclopentanone. Chemistry 2017; 23:13131-13140. [PMID: 28692134 PMCID: PMC5639375 DOI: 10.1002/chem.201702376] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2017] [Indexed: 11/24/2022]
Abstract
Despite the growing use of renewable and sustainable biofuels in transportation, their combustion chemistry is poorly understood, limiting our efforts to reduce harmful emissions. Here we report on the (dissociative) ionization and the thermal decomposition mechanism of cyclopentanone, studied using imaging photoelectron photoion coincidence spectroscopy. The fragmentation of the ions is dominated by loss of CO, C2H4, and C2H5, leading to daughter ions at m/z 56 and 55. Exploring the C5H8O.+ potential energy surface reveals hydrogen tunneling to play an important role in low‐energy decarbonylation and probably also in the ethene‐loss processes, yielding 1‐butene and methylketene cations, respectively. At higher energies, pathways without a reverse barrier open up to oxopropenyl and cyclopropanone cations by ethyl‐radical loss and a second ethene‐loss channel, respectively. A statistical Rice–Ramsperger–Kassel–Marcus model is employed to test the viability of this mechanism. The pyrolysis of cyclopentanone is studied at temperatures ranging from about 800 to 1100 K. Closed‐shell pyrolysis products, namely 1,3‐butadiene, ketene, propyne, allene, and ethene, are identified based on their photoion mass‐selected threshold photoelectron spectrum. Furthermore, reactive radical species such as allyl, propargyl, and methyl are found. A reaction mechanism is derived incorporating both stable and reactive species, which were not predicted in prior computational studies.
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Affiliation(s)
- Johan I M Pastoors
- Radboud University, Institute for Molecules and Materials, FELIX Laboratory, Toernooiveld 7c, 6525 ED, Nijmegen, The Netherlands
| | - Andras Bodi
- Laboratory for Synchrotron Radiation and Femtochemistry, Paul Scherrer Institute, 5232, Villigen, Switzerland
| | - Patrick Hemberger
- Laboratory for Synchrotron Radiation and Femtochemistry, Paul Scherrer Institute, 5232, Villigen, Switzerland
| | - Jordy Bouwman
- Radboud University, Institute for Molecules and Materials, FELIX Laboratory, Toernooiveld 7c, 6525 ED, Nijmegen, The Netherlands.,Present address: Sackler Laboratory for Astrophysics, Leiden Observatory, Leiden University, P.O. Box 9513, 2300 RA, Leiden, The Netherlands
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42
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Sztáray B, Voronova K, Torma KG, Covert KJ, Bodi A, Hemberger P, Gerber T, Osborn DL. CRF-PEPICO: Double velocity map imaging photoelectron photoion coincidence spectroscopy for reaction kinetics studies. J Chem Phys 2017; 147:013944. [DOI: 10.1063/1.4984304] [Citation(s) in RCA: 89] [Impact Index Per Article: 12.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Bálint Sztáray
- Department of Chemistry, University of the Pacific, Stockton, California 95211, USA
| | - Krisztina Voronova
- Department of Chemistry, University of the Pacific, Stockton, California 95211, USA
| | - Krisztián G. Torma
- Department of Chemistry, University of the Pacific, Stockton, California 95211, USA
| | - Kyle J. Covert
- Department of Chemistry, University of the Pacific, Stockton, California 95211, USA
| | - Andras Bodi
- Laboratory for Femtochemistry and Synchrotron Radiation, Paul Scherrer Institute (PSI), CH-5232 Villigen, Switzerland
| | - Patrick Hemberger
- Laboratory for Femtochemistry and Synchrotron Radiation, Paul Scherrer Institute (PSI), CH-5232 Villigen, Switzerland
| | - Thomas Gerber
- Laboratory for Femtochemistry and Synchrotron Radiation, Paul Scherrer Institute (PSI), CH-5232 Villigen, Switzerland
| | - David L. Osborn
- Combustion Research Facility, Sandia National Laboratories, Livermore, California 94551, USA
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43
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Sadybekov A, Krylov AI. Coupled-cluster based approach for core-level states in condensed phase: Theory and application to different protonated forms of aqueous glycine. J Chem Phys 2017; 147:014107. [DOI: 10.1063/1.4990564] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022] Open
Affiliation(s)
- Arman Sadybekov
- Department of Chemistry, University of Southern California, Los Angeles, California 90089, USA
| | - Anna I. Krylov
- Department of Chemistry, University of Southern California, Los Angeles, California 90089, USA
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44
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Zhao L, Yang T, Kaiser RI, Troy TP, Xu B, Ahmed M, Alarcon J, Belisario-Lara D, Mebel AM, Zhang Y, Cao C, Zou J. A vacuum ultraviolet photoionization study on high-temperature decomposition of JP-10 (exo-tetrahydrodicyclopentadiene). Phys Chem Chem Phys 2017; 19:15780-15807. [DOI: 10.1039/c7cp01571b] [Citation(s) in RCA: 30] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
High-temperature pyrolysis of JP-10 in flow reactors were performed both experimentally and theoretically. Dozens of products were detected and the decomposition pathways of JP-10 were discussed.
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Affiliation(s)
- Long Zhao
- Department of Chemistry
- University of Hawaii at Manoa
- Honolulu
- USA
| | - Tao Yang
- Department of Chemistry
- University of Hawaii at Manoa
- Honolulu
- USA
| | - Ralf I. Kaiser
- Department of Chemistry
- University of Hawaii at Manoa
- Honolulu
- USA
| | - Tyler P. Troy
- Chemical Sciences Division
- Lawrence Berkeley National Laboratory
- Berkeley
- USA
| | - Bo Xu
- Chemical Sciences Division
- Lawrence Berkeley National Laboratory
- Berkeley
- USA
| | - Musahid Ahmed
- Chemical Sciences Division
- Lawrence Berkeley National Laboratory
- Berkeley
- USA
| | - Juan Alarcon
- Department of Chemistry and Biochemistry
- Florida International University
- Miami
- USA
| | | | - Alexander M. Mebel
- Department of Chemistry and Biochemistry
- Florida International University
- Miami
- USA
| | - Yan Zhang
- National Synchrotron Radiation Laboratory
- University of Science and Technology of China
- Hefei
- P. R. China
| | - Chuangchuang Cao
- National Synchrotron Radiation Laboratory
- University of Science and Technology of China
- Hefei
- P. R. China
| | - Jiabiao Zou
- Key Laboratory for Power Machinery and Engineering of MOE
- Shanghai Jiao Tong University
- Shanghai 200240
- P. R. China
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