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Hua L, Shi H, Lin Q, Wang H, Gao Y, Zeng J, Lou K, Huo X. Selection and Genetic Analysis of High Polysaccharide-Producing Mutants in Inonotus obliquus. Microorganisms 2024; 12:1335. [PMID: 39065103 PMCID: PMC11278842 DOI: 10.3390/microorganisms12071335] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2024] [Revised: 06/25/2024] [Accepted: 06/27/2024] [Indexed: 07/28/2024] Open
Abstract
Inonotus obliquus, a medicinal fungus, has garnered significant attention in scientific research and medical applications. In this study, protoplasts of the I. obliquus HS819 strain were prepared using an enzymatic method and achieved a regeneration rate of 5.83%. To enhance polysaccharide production of I. obliquus HS819, atmospheric and room temperature plasma (ARTP) technology was employed for mutagenesis of the protoplasts. Through liquid fermentation, 32 mutant strains exhibiting diverse characteristics in morphology, color of the fermentation broth, mycelial pellet size, and biomass were screened. Secondary screening identified mutant strain A27, which showed a significant increase in polysaccharide production up to 1.67 g/L and a mycelial dry weight of 17.6 g/L, representing 137.67% and 15% increases compared to the HS819 strain, respectively. Furthermore, the fermentation period was reduced by 2 days, and subsequent subculture cultivation demonstrated stable polysaccharide production and mycelial dry weight. The genome resequencing analysis of the HS819 strain and mutant strain A27 revealed 3790 InDel sites and mutations affecting 612 functional genes associated with polysaccharide synthesis. We predict that our findings will be helpful for high polysaccharide production through genetic engineering of I. obliquus.
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Affiliation(s)
- Lanlan Hua
- Institute of Microbiology, Xinjiang Academy of Agricultural Sciences, Urumqi 830091, China
- Xinjiang Laboratory of SpecialEnvironmental Microbiology, Urumqi 830091, China; (L.H.); (H.S.); (Q.L.); (Y.G.); (J.Z.)
| | - Hongling Shi
- Institute of Microbiology, Xinjiang Academy of Agricultural Sciences, Urumqi 830091, China
- Xinjiang Laboratory of SpecialEnvironmental Microbiology, Urumqi 830091, China; (L.H.); (H.S.); (Q.L.); (Y.G.); (J.Z.)
| | - Qing Lin
- Institute of Microbiology, Xinjiang Academy of Agricultural Sciences, Urumqi 830091, China
- Xinjiang Laboratory of SpecialEnvironmental Microbiology, Urumqi 830091, China; (L.H.); (H.S.); (Q.L.); (Y.G.); (J.Z.)
| | - Haozhong Wang
- Institute of Microbiology, Xinjiang Academy of Agricultural Sciences, Urumqi 830091, China
- College of Life Science and Technology, Xinjiang University, Urumqi 830046, China
| | - Yan Gao
- Institute of Microbiology, Xinjiang Academy of Agricultural Sciences, Urumqi 830091, China
- Xinjiang Laboratory of SpecialEnvironmental Microbiology, Urumqi 830091, China; (L.H.); (H.S.); (Q.L.); (Y.G.); (J.Z.)
| | - Jun Zeng
- Institute of Microbiology, Xinjiang Academy of Agricultural Sciences, Urumqi 830091, China
- Xinjiang Laboratory of SpecialEnvironmental Microbiology, Urumqi 830091, China; (L.H.); (H.S.); (Q.L.); (Y.G.); (J.Z.)
| | - Kai Lou
- Institute of Microbiology, Xinjiang Academy of Agricultural Sciences, Urumqi 830091, China
- Xinjiang Laboratory of SpecialEnvironmental Microbiology, Urumqi 830091, China; (L.H.); (H.S.); (Q.L.); (Y.G.); (J.Z.)
| | - Xiangdong Huo
- Institute of Microbiology, Xinjiang Academy of Agricultural Sciences, Urumqi 830091, China
- Xinjiang Laboratory of SpecialEnvironmental Microbiology, Urumqi 830091, China; (L.H.); (H.S.); (Q.L.); (Y.G.); (J.Z.)
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Lutz T, Hadeler B, Jaeckel M, Schulz B, Heinze C. Stable overexpression and targeted gene deletion of the causative agent of ash dieback Hymenoscyphus fraxineus. Fungal Biol Biotechnol 2023; 10:1. [PMID: 36639657 PMCID: PMC9840287 DOI: 10.1186/s40694-023-00149-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2022] [Accepted: 01/05/2023] [Indexed: 01/15/2023] Open
Abstract
BACKGROUND Due to the infection with the invasive ascomycete Hymenoscyphus fraxineus, which has been replacing the closely related and non-pathogenic native Hymenoscyphus albidus, the European ashes, Fraxinus excelsior (also known as the common ash), Fraxinus angustifolia (also known as narrow-leaved ash) and Fraxinus ornus (also known as the manna ash) are at risk. Hymenoscyphus fraxineus is the causative agent of ash dieback of the European ashes, but is non-pathogenic to the native Asian ash Fraxinus mandshurica (also known as the Manchurian ash). Even though the invasion of H. fraxineus is a great threat for ashes in Europe, the fungal biology is still poorly understood. By the use of live cell imaging and targeted gene knock-out, the fungal life cycle and host-pathogen interaction can be studied in more detail. RESULTS Here, we developed a protocol for the preparation of protoplasts from mycelium of H. fraxineus, for their regeneration and for stable transformation with reporter genes and targeted gene knock-out by homologous recombination. We obtained mutants with various levels of reporter gene expression which did not correlate with the number of integrations. In an in vitro infection assay, we demonstrated the suitability of reporter gene overexpression for fungal detection in plant tissue after inoculation. As a proof of principle for targeted gene knock-out, the hygromycin resistance cassette of a reporter gene-expressing mutant was replaced with a geneticin resistance cassette. CONCLUSIONS The invasive fungal pathogen H. fraxineus is threatening the European ashes. To develop strategies for pest management, a better understanding of the fungal life cycle and its host interaction is crucial. Here, we provide a protocol for stable transformation of H. fraxineus to obtain fluorescence reporter strains and targeted gene knock-out mutants. This protocol will help future investigations on the biology of this pathogen.
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Affiliation(s)
- Tobias Lutz
- grid.9026.d0000 0001 2287 2617Institute of Plant Science and Microbiology, Molecular Phytopathology, University of Hamburg, Ohnhorststr. 18, 22609 Hamburg, Germany
| | - Birgit Hadeler
- grid.9026.d0000 0001 2287 2617Institute of Plant Science and Microbiology, Molecular Phytopathology, University of Hamburg, Ohnhorststr. 18, 22609 Hamburg, Germany
| | - Mareike Jaeckel
- grid.9026.d0000 0001 2287 2617Institute of Plant Science and Microbiology, Molecular Phytopathology, University of Hamburg, Ohnhorststr. 18, 22609 Hamburg, Germany
| | - Barbara Schulz
- grid.6738.a0000 0001 1090 0254Institute of Microbiology, Technische Universität Braunschweig, Spielmannstr. 7, 38106 Brunswick, Germany
| | - Cornelia Heinze
- grid.9026.d0000 0001 2287 2617Institute of Plant Science and Microbiology, Molecular Phytopathology, University of Hamburg, Ohnhorststr. 18, 22609 Hamburg, Germany
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Interspecific hybridization between Ganoderma lingzhi and G. applanatum through protoplast fusion. World J Microbiol Biotechnol 2021; 37:114. [PMID: 34115218 DOI: 10.1007/s11274-021-03084-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2020] [Accepted: 06/02/2021] [Indexed: 10/21/2022]
Abstract
Interspecific hybridization between Ganoderma lingzhi and G. applanatum was attempted through polyethylene glycol (PEG) induced fusion technique. The protoplast isolation procedure was simplified, and we obtained a significant number of protoplasts from both Ganoderma species. The number of protoplasts obtained was 5.27 ± 0.31 × 107/mL in G. lingzhi and 5.57 ± 0.49 × 106/mL in G. applanatum. Osmotic stabilizer NaCl (0.4 M) at pH 5.8 and enzymolysis time 3.5 h have supported high frequency of protoplast regeneration. G. lingzhi and G. applanatum regeneration frequency was 1.73 ± 0.04% and 0.23 ± 0.02%, respectively. 40% of PEG induced high number of protoplast fusion the regeneration frequency was 0.09% on a minimal medium. Two hundred fifty-two fusant colonies were isolated from the following four individual experiments. Among them, ten fusants showed the mycelial morphological difference compared to their parents and other fusant isolates. The fruiting body could be generated on oak sawdust and wheat bran substrate, and a few of them showed recombined morphology of the parental strains. The highest yield and biological efficacy (BE) were recorded in GF248, while least in GF244. The hybridity of the fusant was established based on mycelia, fruiting morphology, and PCR fingerprinting. ISSR and RAPD profile analysis of ten fusants and parents depicted that fusants contained polymorphic bands, which specified the rearrangement and deletion of DNA in the fusants. A Dendrogram was constructed based on the RAPD profile, and the clustering data exhibited two major clusters: cluster I included the G. lingzhi and Cluster II, including the G. applanatum and fusant lines. Total polysaccharide (α, β and total glucan) content was compared with fusants and parental strains. The present study highlighted the efficient methods for protoplast isolation from Ganoderma species. PEG-induced fusants showed high polymorphic frequency index, while the phenotypic characters showed high similarity to G. applanatum. A significant difference was observed in the mushroom yield and its total polysaccharide between the fusants and parental strains.
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Naranjo‐Ortiz MA, Gabaldón T. Fungal evolution: cellular, genomic and metabolic complexity. Biol Rev Camb Philos Soc 2020; 95:1198-1232. [PMID: 32301582 PMCID: PMC7539958 DOI: 10.1111/brv.12605] [Citation(s) in RCA: 53] [Impact Index Per Article: 13.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2019] [Revised: 03/31/2020] [Accepted: 04/02/2020] [Indexed: 12/13/2022]
Abstract
The question of how phenotypic and genomic complexity are inter-related and how they are shaped through evolution is a central question in biology that historically has been approached from the perspective of animals and plants. In recent years, however, fungi have emerged as a promising alternative system to address such questions. Key to their ecological success, fungi present a broad and diverse range of phenotypic traits. Fungal cells can adopt many different shapes, often within a single species, providing them with great adaptive potential. Fungal cellular organizations span from unicellular forms to complex, macroscopic multicellularity, with multiple transitions to higher or lower levels of cellular complexity occurring throughout the evolutionary history of fungi. Similarly, fungal genomes are very diverse in their architecture. Deep changes in genome organization can occur very quickly, and these phenomena are known to mediate rapid adaptations to environmental changes. Finally, the biochemical complexity of fungi is huge, particularly with regard to their secondary metabolites, chemical products that mediate many aspects of fungal biology, including ecological interactions. Herein, we explore how the interplay of these cellular, genomic and metabolic traits mediates the emergence of complex phenotypes, and how this complexity is shaped throughout the evolutionary history of Fungi.
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Affiliation(s)
- Miguel A. Naranjo‐Ortiz
- Bioinformatics and Genomics Programme, Centre for Genomic Regulation (CRG)The Barcelona Institute of Science and TechnologyDr. Aiguader 88, Barcelona08003Spain
| | - Toni Gabaldón
- Bioinformatics and Genomics Programme, Centre for Genomic Regulation (CRG)The Barcelona Institute of Science and TechnologyDr. Aiguader 88, Barcelona08003Spain
- Department of Experimental Sciences, Universitat Pompeu Fabra (UPF)Dr. Aiguader 88, 08003BarcelonaSpain
- ICREAPg. Lluís Companys 23, 08010BarcelonaSpain
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Götz R, Panzer S, Trinks N, Eilts J, Wagener J, Turrà D, Di Pietro A, Sauer M, Terpitz U. Expansion Microscopy for Cell Biology Analysis in Fungi. Front Microbiol 2020; 11:574. [PMID: 32318047 PMCID: PMC7147297 DOI: 10.3389/fmicb.2020.00574] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2020] [Accepted: 03/16/2020] [Indexed: 12/11/2022] Open
Abstract
Super-resolution microscopy has evolved as a powerful method for subdiffraction-resolution fluorescence imaging of cells and cellular organelles, but requires sophisticated and expensive installations. Expansion microscopy (ExM), which is based on the physical expansion of the cellular structure of interest, provides a cheap alternative to bypass the diffraction limit and enable super-resolution imaging on a conventional fluorescence microscope. While ExM has shown impressive results for the magnified visualization of proteins and RNAs in cells and tissues, it has not yet been applied in fungi, mainly due to their complex cell wall. Here we developed a method that enables reliable isotropic expansion of ascomycetes and basidiomycetes upon treatment with cell wall degrading enzymes. Confocal laser scanning microscopy (CLSM) and structured illumination microscopy (SIM) images of 4.5-fold expanded sporidia of Ustilago maydis expressing fluorescent fungal rhodopsins and hyphae of Fusarium oxysporum or Aspergillus fumigatus expressing either histone H1-mCherry together with Lifeact-sGFP or mRFP targeted to mitochondria, revealed details of subcellular structures with an estimated spatial resolution of around 30 nm. ExM is thus well suited for cell biology studies in fungi on conventional fluorescence microscopes.
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Affiliation(s)
- Ralph Götz
- Department of Biotechnology and Biophysics, Theodor-Boveri-Institute, Biocenter, Julius-Maximilian-University, Würzburg, Germany
| | - Sabine Panzer
- Department of Biotechnology and Biophysics, Theodor-Boveri-Institute, Biocenter, Julius-Maximilian-University, Würzburg, Germany
| | - Nora Trinks
- Department of Biotechnology and Biophysics, Theodor-Boveri-Institute, Biocenter, Julius-Maximilian-University, Würzburg, Germany
| | - Janna Eilts
- Department of Biotechnology and Biophysics, Theodor-Boveri-Institute, Biocenter, Julius-Maximilian-University, Würzburg, Germany
| | - Johannes Wagener
- Institut für Hygiene und Mikrobiologie, Julius-Maximilian-University, Würzburg, Germany
| | - David Turrà
- Departamento de Genética, Universidad de Córdoba, Córdoba, Spain
| | | | - Markus Sauer
- Department of Biotechnology and Biophysics, Theodor-Boveri-Institute, Biocenter, Julius-Maximilian-University, Würzburg, Germany
| | - Ulrich Terpitz
- Department of Biotechnology and Biophysics, Theodor-Boveri-Institute, Biocenter, Julius-Maximilian-University, Würzburg, Germany
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Wu JD, Chou JC. Optimization of Protoplast Preparation and Regeneration of a Medicinal Fungus Antrodia cinnamomea. MYCOBIOLOGY 2019; 47:483-493. [PMID: 32010470 PMCID: PMC6968695 DOI: 10.1080/12298093.2019.1687252] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/19/2019] [Revised: 10/23/2019] [Accepted: 10/27/2019] [Indexed: 06/10/2023]
Abstract
Antrodia cinnamomea is a unique medicinal fungus in Taiwan. It has been found rich in some pharmacologically active compounds for anti-cancer, hangover, and immune regulation etc. With the in-depth study of these components, it would be interesting and important to establish a molecular system for basic studies of A. cinnamomea. Thus, we would like to set up a foundation for this purpose by studying the A. cinnamomea protoplast preparation and regeneration. Firstly, we studied the optimization method of protoplast preparation of A. cinnamomea, and found various factors that may affect the yield during protoplast preparation, such as mycelial ages, pH values, and osmotic stabilizers. Secondly, in the regeneration of protoplasts, we explored the effects of various conditions on the regeneration of protoplasts, including different media and osmotic pressure. In addition, we found that citrate buffer with pH value around 3 dramatically increased the regeneration of protoplasts of A. cinnamomea, and provided a set of regeneration methodology for A. cinnamomea.
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Affiliation(s)
- Jyun-De Wu
- Department of Life Science, National Dong Hwa University, Hualien, Taiwan
| | - Jyh-Ching Chou
- Department of Natural Resources and Environmental Studies, National Dong Hwa University, Hualien, Taiwan
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Roth MG, Chilvers MI. A protoplast generation and transformation method for soybean sudden death syndrome causal agents Fusarium virguliforme and F. brasiliense. Fungal Biol Biotechnol 2019; 6:7. [PMID: 31123591 PMCID: PMC6518667 DOI: 10.1186/s40694-019-0070-0] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2019] [Accepted: 04/23/2019] [Indexed: 11/29/2022] Open
Abstract
Background Soybean production around the globe faces significant annual yield losses due to pests and diseases. One of the most significant causes of soybean yield loss annually in the U.S. is sudden death syndrome (SDS), caused by soil-borne fungi in the Fusarium solani species complex. Two of these species, F. virguliforme and F. brasiliense, have been discovered in the U.S. The genetic mechanisms that these pathogens employ to induce root rot and SDS are largely unknown. Previous methods describing F. virguliforme protoplast generation and transformation have been used to study gene function, but these methods lack important details and controls. In addition, no reports of protoplast generation and genetic transformation have been made for F. brasiliense. Results We developed a new protocol for developing fungal protoplasts in these Fusarium species and test the protoplasts for the ability to take up foreign DNA. We show that wild-type strains of F. virguliforme and F. brasiliense are sensitive to the antibiotics hygromycin and nourseothricin, but strains transformed with resistance genes displayed resistance to these antibiotics. In addition, integration of fluorescent protein reporter genes demonstrates that the foreign DNA is expressed and results in a functional protein, providing fluorescence to both pathogens. Conclusions This protocol provides significant details for reproducibly producing protoplasts and transforming F. virguliforme and F. brasiliense. The protocol can be used to develop high quality protoplasts for further investigations into genetic mechanisms of growth and pathogenicity of F. virguliforme and F. brasiliense. Fluorescent strains developed in this study can be used to investigate temporal colonization and potential host preferences of these species. Electronic supplementary material The online version of this article (10.1186/s40694-019-0070-0) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Mitchell G Roth
- 1Department of Plant, Soil and Microbial Sciences, Michigan State University, 1066 Bogue St., East Lansing, 48824 MI USA.,2Genetics Graduate Program, Michigan State University, 567 Wilson Rd., East Lansing, 48824 MI USA
| | - Martin I Chilvers
- 1Department of Plant, Soil and Microbial Sciences, Michigan State University, 1066 Bogue St., East Lansing, 48824 MI USA.,2Genetics Graduate Program, Michigan State University, 567 Wilson Rd., East Lansing, 48824 MI USA
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Tebeest DO, Weidemann GJ. Preparation And Regeneration of Protoplasts ofColletotrichum GloeosporioidesF. Sp.Aeschynomene. Mycologia 2018. [DOI: 10.1080/00275514.1990.12025871] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
Affiliation(s)
- D. O. Tebeest
- Department of Plant Pathology, University of Arkansas, Fayetteville, Arkansas 72701
| | - G. J. Weidemann
- Department of Plant Pathology, University of Arkansas, Fayetteville, Arkansas 72701
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Stasz TE, Harman GE, Weeden NF. Protoplast Preparation and Fusion in Two Biocontrol Strains ofTrichoderma Harzianum. Mycologia 2018. [DOI: 10.1080/00275514.1988.12025515] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
Affiliation(s)
- T. E. Stasz
- Department of Horticultural Sciences, New York State Agricultural Experiment Station, Geneva, New York 14456
| | - G. E. Harman
- Department of Horticultural Sciences, New York State Agricultural Experiment Station, Geneva, New York 14456
| | - N. F. Weeden
- Department of Horticultural Sciences, New York State Agricultural Experiment Station, Geneva, New York 14456
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Ren N, Liu J, Yang D, Liu X, Zhou J, Peng Y. Preparation and Regeneration of Protoplasts from the Ethyl Vincamine Producing Fungus CH1 ( Geomyces sp.). Nat Prod Commun 2018. [DOI: 10.1177/1934578x1801300209] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
Abstract
Vinpocetine, a semi-synthetic compound derived from the alkaloid vincamine, exhibits effective pharmacological activities for the treatment and prevention of cerebrovascular circulation and vascular cognitive disorders. Vinpocetine can be produced through a one-step chemical reaction beginning with ethyl vincamine, and a two-step chemical reaction beginning with vincamine. In our previous study, the endophytic fungus CH1, Geomyces sp., was isolated and identified as a producer of ethyl vincamine, which was first obtained by endophytic fungal fermentation. However, the production was largely limited. Fungal protoplasts are a valuable experimental tool for physiological and genetic research such as protoplast fusion, gene transfer and metabolite production. In this paper, we optimized some key factors for the preparation and regeneration of protoplasts from strain CH1. Using an enzymes mixture consisting of cellulase (2.0%, w/v), glusulase (3.0%, w/v) and driselase (1.0%, w/v) in osmotic stabilizer (0.7 mol/L NaCl), the highest yield of protoplasts (6.78×107/mL) was obtained with mycelia after 72 h at pH 5.0-6.0 by digesting for 1.5 h at 30°C. After purification of the prepared protoplasts, they were regenerated in the regeneration medium using a bilayer plate culture method.
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Affiliation(s)
- Na Ren
- Department of Pharmacy Engineering, College of Chemistry and Chemical Engineering, Central South University, Changsha, China
- Hunan Vocational College of Science and Technology, Changsha, China
| | - Jiajia Liu
- Department of Pharmacy Engineering, College of Chemistry and Chemical Engineering, Central South University, Changsha, China
| | - Dongliang Yang
- Department of Pharmacy Engineering, College of Chemistry and Chemical Engineering, Central South University, Changsha, China
- Hunan Vocational College of Science and Technology, Changsha, China
| | - Xiong Liu
- College of Chemistry and Chemical Engineering, Hunan University of Science and Technology, Xiangtan, China
| | - Jing Zhou
- Department of Pharmacy Engineering, College of Chemistry and Chemical Engineering, Central South University, Changsha, China
| | - Yingzi Peng
- Department of Pharmacy Engineering, College of Chemistry and Chemical Engineering, Central South University, Changsha, China
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McCluskey K, Baker SE. Diverse data supports the transition of filamentous fungal model organisms into the post-genomics era. Mycology 2017; 8:67-83. [PMID: 30123633 PMCID: PMC6059044 DOI: 10.1080/21501203.2017.1281849] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2016] [Accepted: 01/10/2017] [Indexed: 01/14/2023] Open
Abstract
Filamentous fungi have been important as model organisms since the beginning of modern biological inquiry and have benefitted from open data since the earliest genetic maps were shared. From early origins in simple Mendelian genetics of mating types, parasexual genetics of colony colour, and the foundational demonstration of the segregation of a nutritional requirement, the contribution of research systems utilising filamentous fungi has spanned the biochemical genetics era, through the molecular genetics era, and now are at the very foundation of diverse omics approaches to research and development. Fungal model organisms have come from most major taxonomic groups although Ascomycete filamentous fungi have seen the most major sustained effort. In addition to the published material about filamentous fungi, shared molecular tools have found application in every area of fungal biology. Similarly, shared data has contributed to the success of model systems. The scale of data supporting research with filamentous fungi has grown by 10 to 12 orders of magnitude. From genetic to molecular maps, expression databases, and finally genome resources, the open and collaborative nature of the research communities has assured that the rising tide of data has lifted all of the research systems together.
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Affiliation(s)
- Kevin McCluskey
- Department of Plant Pathology, Kansas State University, Manhattan, KS, USA
| | - Scott E. Baker
- Environmental Molecular Science Laboratory, Pacific Northwest National Laboratory, Richland, WA, USA
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Su X, Schmitz G, Zhang M, Mackie RI, Cann IKO. Heterologous gene expression in filamentous fungi. ADVANCES IN APPLIED MICROBIOLOGY 2016; 81:1-61. [PMID: 22958526 DOI: 10.1016/b978-0-12-394382-8.00001-0] [Citation(s) in RCA: 53] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Filamentous fungi are critical to production of many commercial enzymes and organic compounds. Fungal-based systems have several advantages over bacterial-based systems for protein production because high-level secretion of enzymes is a common trait of their decomposer lifestyle. Furthermore, in the large-scale production of recombinant proteins of eukaryotic origin, the filamentous fungi become the vehicle of choice due to critical processes shared in gene expression with other eukaryotic organisms. The complexity and relative dearth of understanding of the physiology of filamentous fungi, compared to bacteria, have hindered rapid development of these organisms as highly efficient factories for the production of heterologous proteins. In this review, we highlight several of the known benefits and challenges in using filamentous fungi (particularly Aspergillus spp., Trichoderma reesei, and Neurospora crassa) for the production of proteins, especially heterologous, nonfungal enzymes. We review various techniques commonly employed in recombinant protein production in the filamentous fungi, including transformation methods, selection of gene regulatory elements such as promoters, protein secretion factors such as the signal peptide, and optimization of coding sequence. We provide insights into current models of host genomic defenses such as repeat-induced point mutation and quelling. Furthermore, we examine the regulatory effects of transcript sequences, including introns and untranslated regions, pre-mRNA (messenger RNA) processing, transcript transport, and mRNA stability. We anticipate that this review will become a resource for researchers who aim at advancing the use of these fascinating organisms as protein production factories, for both academic and industrial purposes, and also for scientists with general interest in the biology of the filamentous fungi.
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Affiliation(s)
- Xiaoyun Su
- Energy Biosciences Institute, University of Illinois, Urbana, IL, USA; Institute for Genomic Biology, University of Illinois, Urbana, IL, USA; Equal contribution
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13
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Protoplast preparation and polyethylene glycol (PEG)-mediated transformation of Candida glycerinogenes. BIOTECHNOL BIOPROC E 2016. [DOI: 10.1007/s12257-015-0686-8] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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14
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15
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16
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Mendoza CG. Cell wall structure and protoplast reversion in basidiomycetes. World J Microbiol Biotechnol 2014; 8 Suppl 1:36-8. [PMID: 24425639 DOI: 10.1007/bf02421486] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
Affiliation(s)
- C G Mendoza
- Centro de Investigaciones Biológicas, C.S.I.C., Velàsquez 144, 28006, Madrid, Spain
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17
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Morales L, Dujon B. Evolutionary role of interspecies hybridization and genetic exchanges in yeasts. Microbiol Mol Biol Rev 2012; 76:721-39. [PMID: 23204364 PMCID: PMC3510521 DOI: 10.1128/mmbr.00022-12] [Citation(s) in RCA: 123] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022] Open
Abstract
Forced interspecific hybridization has been used in yeasts for many years to study speciation or to construct artificial strains with novel fermentative and metabolic properties. Recent genome analyses indicate that natural hybrids are also generated spontaneously between yeasts belonging to distinct species, creating lineages with novel phenotypes, varied genetic stability, or altered virulence in the case of pathogens. Large segmental introgressions from evolutionarily distant species are also visible in some yeast genomes, suggesting that interspecific genetic exchanges occur during evolution. The origin of this phenomenon remains unclear, but it is likely based on weak prezygotic barriers, limited Dobzhansky-Muller (DM) incompatibilities, and rapid clonal expansions. Newly formed interspecies hybrids suffer rapid changes in the genetic contribution of each parent, including chromosome loss or aneuploidy, translocations, and loss of heterozygosity, that, except in a few recently studied cases, remain to be characterized more precisely at the genomic level by use of modern technologies. We review here known cases of natural or artificially formed interspecies hybrids between yeasts and discuss their potential importance in terms of genome evolution. Problems of meiotic fertility, ploidy constraint, gene and gene product compatibility, and nucleomitochondrial interactions are discussed and placed in the context of other known mechanisms of yeast genome evolution as a model for eukaryotes.
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Affiliation(s)
- Lucia Morales
- Institut Pasteur, Unité de Génétique Moléculaire des Levures CNRS UMR3525, University Pierre and Marie Curie UFR927, Paris, France.
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Thomas E, Pakala S, Fedorova ND, Nierman WC, Cubeta MA. Triallelic SNP-mediated genotyping of regenerated protoplasts of the heterokaryotic fungus Rhizoctonia solani. J Biotechnol 2012; 158:144-50. [DOI: 10.1016/j.jbiotec.2012.01.024] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2011] [Revised: 01/17/2012] [Accepted: 01/24/2012] [Indexed: 11/28/2022]
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Gold MH, Cheng TM, Alic M. Formation, Fusion, and Regeneration of Protoplasts from Wild-Type and Auxotrophic Strains of the White Rot Basidiomycete Phanerochaete chrysosporium. Appl Environ Microbiol 2010; 46:260-3. [PMID: 16346345 PMCID: PMC239297 DOI: 10.1128/aem.46.1.260-263.1983] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
A preparation of two commercial enzymes was used to liberate protoplasts from 16-h-old mycelium of Phanerochaete chrysosporium. Regeneration frequencies of up to 5% were attained when the protoplasts were plated in a medium containing 10% sorbose and 3% agar. Fusion of protoplasts from different auxotrophic strains in polyethylene glycol-Ca produced heterokaryons. Separation of the heterokaryons into their constituent homokaryotic strains could be effected through protoplast release and formation of colonies on regeneration agar.
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Affiliation(s)
- M H Gold
- Department of Chemistry and Biochemical Sciences, Oregon Graduate Center, Beaverton, Oregon 97006
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Chávez R, Roa A, Navarrete K, Trebotich J, Espinosa Y, Vaca I. Evaluation of properties of several cheese-ripening fungi for potential biotechnological applications. MYCOSCIENCE 2010. [DOI: 10.1007/s10267-009-0004-4] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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21
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Terpitz U, Raimunda D, Westhoff M, Sukhorukov VL, Beaugé L, Bamberg E, Zimmermann D. Electrofused giant protoplasts of Saccharomyces cerevisiae as a novel system for electrophysiological studies on membrane proteins. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 2008; 1778:1493-500. [DOI: 10.1016/j.bbamem.2008.03.015] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/14/2008] [Revised: 03/15/2008] [Accepted: 03/20/2008] [Indexed: 11/26/2022]
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Balasubramanian N, Juliet GA, Srikalaivani P, Lalithakumari D. Release and regeneration of protoplasts from the fungus Trichothecium roseum. Can J Microbiol 2003; 49:263-8. [PMID: 12897835 DOI: 10.1139/w03-034] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
A protocol for isolating and regenerating protoplasts from Trichothecium roseum has been described. Protoplasts from T. roseum were isolated using (i) a lytic enzyme combination composed of Novozym 234, chitinase, cellulase, and pectinase at a 5-mg/mL concentration and (ii) 0.6 M KCl as an osmotic stabilizer. A maximum number of 28 x 10(4) protoplasts/mL were obtained at pH 5.5. Experiments on the regeneration and reversion of protoplasts revealed a maximum regeneration (60.8%) in complete medium (potato dextrose--yeast extract agar) amended with 0.6 M KCl. The regenerated protoplasts were similar to the original parent strain in morphology, pigmentation, growth, and sporulation.
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Affiliation(s)
- N Balasubramanian
- Center for Advanced Studies in Botany, University of Madras, Chennai, India
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24
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Abstract
Infections with mold pathogens have emerged as an increasing risk faced by patients under sustained immunosuppression. Species of the Aspergillus family account for most of these infections, and in particular Aspergillus fumigatus may be regarded as the most important airborne pathogenic fungus. The improvement in transplant medicine and the therapy of hematological malignancies is often complicated by the threat of invasive aspergillosis. Specific diagnostic methods are still limited as are the possibilities of therapeutic intervention, leading to the disappointing fact that invasive aspergillosis is still associated with a high mortality rate that ranges from 30% to 90%. In recent years considerable progress has been made in understanding the genetics of A. fumigatus, and molecular techniques for the manipulation of the fungus have been developed. Molecular genetics offers not only approaches for the detailed characterization of gene products that appear to be key components of the infection process but also selection strategies that combine classical genetics and molecular biology to identify virulence determinants of A. fumigatus. Moreover, these methods have a major impact on the development of novel strategies leading to the identification of antimycotic drugs. This review summarizes the current knowledge on the biology, molecular genetics, and genomics of A. fumigatus.
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Affiliation(s)
- Axel A Brakhage
- Institut für Mikrobiologie, Universität Hannover, Schneiderberg 50, Germany.
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Kim BK, Kang JH, Jin M, Kim HW, Shim MJ, Choi EC. Mycelial protoplast isolation and regeneration of Lentinus lepideus. Life Sci 2000; 66:1359-67. [PMID: 10755472 DOI: 10.1016/s0024-3205(00)00444-6] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
Abstract
Generation of fungal protoplast is essential for fusion and transformation systems. Protoplast fusion offers great potential for the improvement of industrially important microorganisms. To establish conditions for the protoplast isolation and regeneration of the mycelia of Lentinus lepideus, various enzymes and osmotic stabilizers were examined. To investigate suitable medium for the culture of L. lepideus, the mycelia were grown in ten different media at 28 degrees C for 10 days. Among them potato dextrose agar (PDA) medium was found to be the best for colony growth. When Novozym 234, cellulase and beta-glucuronidase were added to the mycelia in combination or alone, Novozym 234 alone at the concentration of 10 mg/ml was the most effective for the protoplast yield. Purified spherical protoplasts of the mycelia were osmotically hypersensitive and further incubation of the mycelia with the lytic enzyme resulted in the older parts of the hyphae swollen. When we applied various osmotic stabilizers at the fixed concentration of 0.6 M on the protoplasts, the yields of protoplasts were increased until 4-hr incubation. However application of sucrose or MgSO4 led to further protection of protoplasts after that time and reached a plateau on 5- and 7-hr incubations, respectively. The suitable incubation time and optimal pH with the lytic enzyme for the maximum release of protoplasts were 6 hrs of incubation and pH 5, respectively. When we examined various osmotic stabilizers for the regeneration of the protoplast, the complete medium containing 0.6 M sucrose induced highest hyphal growth with regeneration frequency of 3.28%.
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Affiliation(s)
- B K Kim
- College of Pharmacy, Seoul National University, Korea.
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Pera LM, Rubinstein L, BaigorÄ±Ì MD, Figueroa LI, Callieri DA. Influence of manganese on cell morphology, protoplasts formation and β-d-glucosidase activity in Phaffia rhodozyma. FEMS Microbiol Lett 1999. [DOI: 10.1111/j.1574-6968.1999.tb13426.x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022] Open
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Minto RE, Townsend CA. Enzymology and Molecular Biology of Aflatoxin Biosynthesis. Chem Rev 1997; 97:2537-2556. [PMID: 11851470 DOI: 10.1021/cr960032y] [Citation(s) in RCA: 169] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Robert E. Minto
- Department of Chemistry, The Johns Hopkins University, Baltimore, Maryland 21218
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Borba CDM, Meirelles MN, da Silva AM, de Oliveira PC. Localization of glycoconjugates and glycogen in yeast-like cells and protoplasts of Paracoccidioides brasiliensis. Mycoses 1997; 40:91-4. [PMID: 9375493 DOI: 10.1111/j.1439-0507.1997.tb00193.x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
The presence and localization of storage polysaccharides and of polysaccharides as cell structure constituents of Paracoccidioides brasiliensis yeast-like cells and protoplasts were studied using the periodic acid-thiocarbohydrazide-silver proteinate (PATAg) technique. Yeast-like cells presented glycogen particles in the form of rosettes, which were mostly concentrated in regions of the cytoplasm. Cells in the budding process presented small amounts of glycogen in their matrix. The intracellular membranes and the attachment of the mother cell to the bud were clearly labelled by silver, demonstrating a large amount of glyco-conjugates. The protoplasts presented a small amount of glycogen in their cytoplasm, a reduction probably due to the enzymatic treatment to which the cells were submitted.
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Affiliation(s)
- C de M Borba
- Department of Mycology, Oswaldo Cruz Institute, Oswaldo Cruz Foundation, Rio de Janeiro, Brazil
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31
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Liquid culture enhances protoplast formation from the auxotroph (ser(-)) ofLentinula edodes. Arch Pharm Res 1997; 20:206-11. [PMID: 18975153 DOI: 10.1007/bf02976146] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/1997] [Indexed: 10/21/2022]
Abstract
The optimal conditions for the production and regeneration of the protoplasts fromLentinula edodes were studied. Protoplast formation from the mycelia ofL. edodes which were cultured in liquid medium showed a significantly high yield compared with that of the mycelia which were cultured on cellophane covered agar media. A mixture of Novozyme 234 (15 mg/ml) and Cellulase Onozuka R10 (10 mg/ml) in 0.6 M mannitol (pH 4) was optimal lytic enzyme for the protoplast release. The optimal incubation time and mycelia age were 3.5-4 hours at 30 degrees C and 6-8 days, respectively. Regeneration frequency was 0.18% plated onto a medium containing 0.6 M sucrose, and 0.08% plated onto a medium containing mannitol. But hardly any regeneration was observed in the media containing NaCl, KCl, or MgSO(4). More than 90% of the protoplasts contianed nuclei and the nucleus number per protoplast was 1.1. The DNA content per nucleus was 5.1 pg. The diameter of the protoplast was 3-5 mum and it had a well defined cell structure.
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32
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Production and regeneration of protoplasts from the mycorrhizal fungus Suillus granulatus. World J Microbiol Biotechnol 1996; 12:625-8. [DOI: 10.1007/bf00327726] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Revised: 03/22/1996] [Accepted: 04/11/1996] [Indexed: 11/27/2022]
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33
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Das N, Mukherjee M. Preparation and regeneration of mycelial protoplasts ofPleurotus florida andP. ostreatus. Folia Microbiol (Praha) 1996. [DOI: 10.1007/bf02814701] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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34
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Kavanagh K, Whittaker PA. Application of protoplast fusion to the nonconventional yeast. Enzyme Microb Technol 1996. [DOI: 10.1016/0141-0229(96)00072-5] [Citation(s) in RCA: 23] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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35
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Levina NN, Lew RR, Hyde GJ, Heath IB. The roles of Ca2+ and plasma membrane ion channels in hyphal tip growth of Neurospora crassa. J Cell Sci 1995; 108 ( Pt 11):3405-17. [PMID: 8586653 DOI: 10.1242/jcs.108.11.3405] [Citation(s) in RCA: 74] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Growing hyphae of the ascomycete fungus Neurospora crassa contained a tip-high gradient of cytoplasmic Ca2+, which was absent in non-growing hyphae and was insensitive to Gd3+ in the medium. Patch clamp recordings in the cell-attached mode, from the plasma membrane of these hyphae, showed two types of channel activities; spontaneous and stretch activated. The spontaneous channels were identified as inward K+ channels based on inhibition by tetraethylammonium. The stretch activated channels had increased amplitudes in response to elevated Ca2+ in the pipette solution, and thus are permeable to Ca2+ and mediate inward Ca2+ movement. Gd3+, which is an inhibitor of some stretch activated channels, incompletely inhibited stretch activated channel activity. Both tetraethylammonium and Gd3+ only transiently reduced the rates of tip growth without changing tip morphology, thus indicating that the channels are not absolutely essential for tip growth. Furthermore, in contrast to the hyphae of another tip growing organism, Saprolegnia ferax, tip-high gradients of neither spontaneous nor stretch activated channels were found. Voltage clamping of the apical plasma membrane potential in the range from -300 to +150 mV did not affect the rates of hyphal elongation. Collectively, these data suggest that ion transport across the plasma membrane at the growing tip in Neurospora is not obligatory for the maintenance of tip growth, but that a gradient of Ca2+, possibly generated from internal stores in an unknown way, is required.
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Affiliation(s)
- N N Levina
- Biology Department, York University, North York, Ontario, Canada
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36
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Borba CDM, Meirelles MN, da Silva AM, de Oliveira PC. Paracoccidioides brasiliensis protoplast production by enzymatic treatment. Mycoses 1994; 37:317-23. [PMID: 7746289 DOI: 10.1111/myc.1994.37.9-10.317] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
The action of the enzymes novozym 234, chitinase and zymolyase 20T on the yeast-like cells of Paracoccidioides brasiliensis was studied in an attempt to obtain protoplast release. Three enzyme systems were used: the first consisted of novozym 234 and chitinase plus 0.2 M phosphate buffer, 0.9 M sorbitol and 0.5 M sodium thioglycolate; the second consisted of novozym 234, chitinase, zymolyase 20T, buffer and osmotic stabilizer, with no sodium thioglycolate; the third consisted of the same enzymes as used in the second system but at twice the concentration, plus buffer and osmotic stabilizer. Protoplasts were only released from 72-h-old cells cultured on solid peptone-yeast extract-glucose medium (PYG) treated with the third enzyme system. Sodium thioglycolate used as pretreatment favoured protoplast release but had no such action when added to the enzyme solution, possibly by altering the activity of the enzymes, novozym 234 in particular. The osmotic stabilizer used, 0.9 M sorbitol, was probably one of the factors, in addition to the enzymes, responsible for the cytoplasmic changes observed by transmission electron microscopy in yeast phase cells and in their protoplasts.
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Affiliation(s)
- C de M Borba
- Department of Mycology, Oswaldo Cruz Institute, Oswaldo Cruz Foundation, Rio de Janeiro, Brazil
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Lakshmi BR, Chandra TS. Rapid release of protoplasts from Eremothecium ashbyii in comparison with Trichoderma reesei and Penicillium chrysogenum using novozyme and funcelase. Enzyme Microb Technol 1993; 15:699-702. [PMID: 7763961 DOI: 10.1016/0141-0229(93)90072-a] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
Protoplast release in Eremothecium ashbyii, Trichoderma reesei, and Penicillium chrysogenum was achieved using commercially available enzymes, Novozyme 234 and Funcelase. A rapid release of protoplasts was observed in E. ashbyii, yielding nearly 4.0 x 10(7) protoplasts ml-1 in 10-35 min. The regeneration frequency of protoplasts from T. reesei, P. chrysogenum, and E. ashbyii using Funcelase was 51.77, 28.32, and 7.64%, respectively, and was higher in comparison with Novozyme-derived protoplasts.
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Affiliation(s)
- B R Lakshmi
- Department of Chemistry, Indian Institute of Technology, Madras
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38
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An efficient method for the preparation of protoplasts fromTrichoderma viride. Folia Microbiol (Praha) 1993. [DOI: 10.1007/bf02814380] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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39
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Protoplast formation and DNA-mediated transformation of Fusarium culmorum to hygromycin B resistance. ACTA ACUST UNITED AC 1993. [DOI: 10.1016/s0953-7562(09)81127-1] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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40
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Larena I, Melgarejo P. The lytic enzymatic complex of Penicillium purpurogenum and its effects on Monilinia laxa. ACTA ACUST UNITED AC 1993. [DOI: 10.1016/s0953-7562(09)81146-5] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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41
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Anjani Kumari J, Panda T. Studies on critical analysis of factors influencing improved production of protoplasts from Trichoderma reesei mycelium. Enzyme Microb Technol 1992. [DOI: 10.1016/0141-0229(92)90073-w] [Citation(s) in RCA: 24] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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42
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Cary J, Stovall M. Optimum conditions for the release and regeneration of protoplasts of Alternaria alternata. Lett Appl Microbiol 1992. [DOI: 10.1111/j.1472-765x.1992.tb00658.x] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Park SH, Choi EC, Kim BK. Studies on intergeneric protoplast fusion and nuclear transfer betweenGanoderma lucidum andCoriolus versicolor. Arch Pharm Res 1991. [DOI: 10.1007/bf02876870] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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44
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Zemanová Z, Pavlícek I, Vondrejs V. Formation and reversion of Schizosaccharomyces pombe cells with apical protoplast protuberances. Folia Microbiol (Praha) 1991; 36:153-7. [PMID: 1823651 DOI: 10.1007/bf02814495] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
Lytic enzymes from the hepatopancreas of Helix pomatia do not induce a uniform digestion of the cell wall of Schizosaccharomyces pombe over the entire cell surface. Perforations are formed in growth zones through which a protoplast can locally protrude. Conditions were found under which the frequency of formation of apical protoplast protuberances is higher than 90% cells with such protuberances can reverse to normally multiplying cells.
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Affiliation(s)
- Z Zemanová
- Department of Genetics and Microbiology, Faculty of Science, Charles University, Prague
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45
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Kwan HS, Li CC, Chiu SW, Cheng SC. A simple method to prepare intact yeast chromosomal DNA for pulsed field gel electrophoresis. Nucleic Acids Res 1991; 19:1347. [PMID: 2030955 PMCID: PMC333872 DOI: 10.1093/nar/19.6.1347] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022] Open
Affiliation(s)
- H S Kwan
- Department of Biology, Chinese University of Hong Kong, Shatin, NT
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46
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Morphological and ultrastructural studies on protoplast production and reversion of the higher basidiomyceteAgaricus bisporus. Curr Microbiol 1991. [DOI: 10.1007/bf02092133] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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47
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Dlugoński J, Bartnicka K, Zemełko I, Chojecka V, Sedlaczek L. Determination of cytochrome P-450 in Cunninghamella elegans intact protoplasts and cell-free preparations capable of steroid hydroxylation. J Basic Microbiol 1991; 31:347-56. [PMID: 1813623 DOI: 10.1002/jobm.3620310510] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
Cytochrome P-450 was shown to be involved in 11 alpha-, and 11 beta-hydroxylation of Substance S in intact C. elegans protoplasts. The steroid transformation was inhibited by carbon monoxide, the inhibitory effect being dependent on CO concentration. The function of cyt P-450 in intact protoplasts was confirmed by the estimation of strong absorption at 450 nm in the CO difference spectrum. The presence of antimycin A was necessary to prevent the reduction of the cytochrome oxidase and its interference with the cyt P-450 in the spectrophotometric analysis. The intracellular content of cyt P-450 could be increased from 5.25 pM/mg protein to 26.88 pM/mg protein when the steroid inducer was present in the medium at each stage of protoplast preparation and during cyt P-450 determination. The enriched microsomal fraction obtained from the crude extract of ruptured protoplasts contained the steroid 11 alpha-hydroxylase system of C. elegans. The activity of 11 beta-hydroxylase could not be detected under the conditions of the experiment. The localization of steroid hydroxylases of C. elegans in microsomes was confirmed by cyt P-450 detection in the 9600 x g supernatant. Membranous fractions (pellets 1100 x g and 9600 x g) of the concanavaline A stabilized protoplasts, carrying the marker plasma-membrane-bound and mitochondrial ATPases, did not show maximum absorption at 450 nm in the CO difference spectrum.
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Affiliation(s)
- J Dlugoński
- Microbiology and Virology Centre, Polish Academy of Sciences, Lódź
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48
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Abstract
The beta-glucans different from cellulose are the most abundant class of polysaccharides. They are found in microorganisms and higher plants as structural entities of cell wall, as cytoplasmic and vacuolar reserve materials, and as extracellular substances. Enzyme systems capable to hydrolyze beta-glucans are produced by different microorganisms. The occurrence and nature of beta-glucanases and their substrates are reviewed. The regulation of biosynthesis of these enzymes, their properties, substrate and product specificities, mode of action and molecular cloning are described. The participation of beta-glucanases in the morphogenetic events of yeast cell is presented. The role and synergism of different types of 1,3-beta-glucanases in microbial cell wall lysis and the potential application for isolation of intracellular materials like proteins, carbohydrates, enzymes and as an analytical tool are discussed in the light of current knowledge.
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50
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Chadegani M, Brink JJ, Shehata A, Ahmadjian V. Optimization of protoplast formation, regeneration, and viability in Microsporum gypseum. Mycopathologia 1989; 107:33-50. [PMID: 2811981 DOI: 10.1007/bf00437588] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
Factors affecting high yields, regeneration frequencies, and viability of protoplasts from clonal cultures of Microsporum gypseum were investigated. Maximum yields of protoplasts were obtained after 6 hrs digestion of 2-4 days old mycelium with Novozyme 234 using CaCl2 (0.4 M) as an osmotic stabilizer and glycine + HCl (pH 4.5) as the buffer system. Mercaptoethanol + dithiothreitol (0.01 M) proved to be the best pretreatment of mycelium prior to digestion with enzyme. A regeneration frequency of 94.4% was obtained using the top agar method with complete medium (pH 6.5) containing 0.5% agar and 0.4 M CaCl2 as an osmoticum. Colonies from regenerated protoplasts on medium containing CaCl2 were pigmented and completely powdery with high sporulation. Protoplast viability was studied in osmotic stabilizer supplemented with glucose or glutamine. After 24 hrs, glucose (2%) and glutamine (2%) enhanced protoplast viability by 22% and 23%, respectively. Protein synthesis, as measured by 3H-lysine uptake, matched the viability profile determined by fluorescence microscopy.
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Affiliation(s)
- M Chadegani
- Department of Biology, Clark University, Worcester, MA 01610-1477
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