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Liu M, Zhou Y, Ding J, Wei F, Wang F, Nie S, Chen X, Jiang Y, Huang M, Hu L. Prediction of active drug-resistant pulmonary tuberculosis based on CT radiomics: construction and validation of independent models and combined models for residual pulmonary parenchyma. Front Med (Lausanne) 2025; 12:1508736. [PMID: 40231084 PMCID: PMC11994410 DOI: 10.3389/fmed.2025.1508736] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2024] [Accepted: 03/19/2025] [Indexed: 04/16/2025] Open
Abstract
Background Drug-resistant tuberculosis (DR-TB) is a severe public health threat and burden worldwide. This study seeks to develop and validate both independent and combined radiomic models using pulmonary cavity (PC), tree-in-bud sign (TIB), total lung lesions (TLL), and residual pulmonary parenchyma (RPP) to evaluate their effectiveness in predicting DR-TB. Methods We recruited 306 confirmed active pulmonary tuberculosis cases from two hospitals, comprising 142 drug-resistant and 164 drug-sensitive cases. Patients were assigned to five training and testing cohorts: PC (n = 109, 47), TIB (n = 214, 92), TLL (n = 214, 92), RPP (n = 214, 92), and their combination (n = 109, 47). Radiomic features were extracted using variance thresholding, K-best, and LASSO techniques. We developed four separate radiomic models with random forest (RF) for DR-TB prediction and created a combined model integrating all features from the four indicators. Model performance was validated using ROC curves. Results We extracted 10, 2, 10, 3, and 9 radiomic features from PC, TIB, TLL, RPP, and the combined model, respectively. The combined model achieved AUC values of 0.886 (95% CI: 0.827-0.945) in the training set and 0.865 (95% CI: 0.764-0.966) in the testing set. It slightly surpassed the PC model in the training set (0.886 vs. 0.850, p < 0.05) and was comparable in the testing set (0.865 vs. 0.850, p > 0.05). The combined model showed similar performance to the TIB, TLL, and RPP models in both sets (p > 0.05). Conclusion The newly defined and developed RPP model and the combined model demonstrated robust performance in identifying DR-TB, highlighting the potential of CT-based radiomic models as effective non-invasive tools for DR-TB prediction.
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Affiliation(s)
- Mingke Liu
- Department of Radiology, The Affiliated Yongchuan Hospital of Chongqing Medical University, Chongqing, China
| | - Yongxia Zhou
- Department of Radiology, The Affiliated Yongchuan Hospital of Chongqing Medical University, Chongqing, China
| | - Jing Ding
- Department of Infection, The Affiliated Yongchuan Hospital of Chongqing Medical University, Chongqing, China
| | - Fuli Wei
- Department of Radiology, The Affiliated Yongchuan Hospital of Chongqing Medical University, Chongqing, China
| | - Fang Wang
- Department of Research and Development, Shanghai United Imaging Intelligence Co., Ltd., Shanghai, China
| | - Siyao Nie
- Department of Preventive Medicine, The Affiliated Yongchuan Hospital of Chongqing Medical University, Chongqing, China
| | - Xianv Chen
- Department of Radiology, Beibei Hospital of Chongqing Medical University, Chongqing, China
| | - Yuting Jiang
- Department of Radiology, The Affiliated Yongchuan Hospital of Chongqing Medical University, Chongqing, China
| | - Mingmeng Huang
- Department of Radiology, The Affiliated Yongchuan Hospital of Chongqing Medical University, Chongqing, China
| | - Liangbo Hu
- Department of Radiology, The Affiliated Yongchuan Hospital of Chongqing Medical University, Chongqing, China
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Song J, Hwang EJ, Yoon SH, Park CM, Goo JM. Emerging Trends and Innovations in Radiologic Diagnosis of Thoracic Diseases. Invest Radiol 2025:00004424-990000000-00308. [PMID: 40106831 DOI: 10.1097/rli.0000000000001179] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/22/2025]
Abstract
ABSTRACT Over the past decade, Investigative Radiology has published numerous studies that have fundamentally advanced the field of thoracic imaging. This review summarizes key developments in imaging modalities, computational tools, and clinical applications, highlighting major breakthroughs in thoracic diseases-lung cancer, pulmonary nodules, interstitial lung disease (ILD), chronic obstructive pulmonary disease (COPD), COVID-19 pneumonia, and pulmonary embolism-and outlining future directions.Artificial intelligence (AI)-driven computer-aided detection systems and radiomic analyses have notably improved the detection and classification of pulmonary nodules, while photon-counting detector CT (PCD-CT) and low-field MRI offer enhanced resolution or radiation-free strategies. For lung cancer, CT texture analysis and perfusion imaging refine prognostication and therapy planning. ILD assessment benefits from automated diagnostic tools and innovative imaging techniques, such as PCD-CT and functional MRI, which reduce the need for invasive diagnostic procedures while improving accuracy. In COPD, dual-energy CT-based ventilation/perfusion assessment and dark-field radiography enable earlier detection and staging of emphysema, complemented by deep learning approaches for improved quantification. COVID-19 research has underscored the clinical utility of chest CT, radiographs, and AI-based algorithms for rapid triage, disease severity evaluation, and follow-up. Furthermore, tuberculosis remains a significant global health concern, highlighting the importance of AI-assisted chest radiography for early detection and management. Meanwhile, advances in CT pulmonary angiography, including dual-energy reconstructions, allow more sensitive detection of pulmonary emboli.Collectively, these innovations demonstrate the power of merging novel imaging technologies, quantitative functional analysis, and AI-driven tools to transform thoracic disease management. Ongoing progress promises more precise and personalized diagnostic and therapeutic strategies for diverse thoracic diseases.
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Affiliation(s)
- Jiyoung Song
- From the Department of Radiology, Seoul National University Hospital and College of Medicine, Seoul, Korea (J.S., E.J.H., S.H.Y., C.M.P., J.M.G.); Institute of Radiation Medicine, Seoul National University Medical Research Center, Seoul, Korea (E.J.H., S.H.Y., C.M.P., J.M.G.); Institute of Medical and Biological Engineering, Seoul National University Medical Research Center, Seoul, Korea (C.M.P.); and Seoul National University Cancer Research Institute, Seoul National University College of Medicine, Seoul, Korea (J.M.G.)
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Min J, Halton J, Villegas C, Chua A, Hewison C, Deborggraeve S. Scanned: The global investments in computer-aided detection and ultraportable X-ray for tuberculosis. PLOS GLOBAL PUBLIC HEALTH 2025; 5:e0004232. [PMID: 40096049 PMCID: PMC11913293 DOI: 10.1371/journal.pgph.0004232] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/19/2025]
Affiliation(s)
- Juno Min
- Médecins Sans Frontières, International, Amsterdam, The Netherlands
| | - Jarred Halton
- Médecins Sans Frontières, International, Amsterdam, The Netherlands
| | | | - Arlene Chua
- Médecins Sans Frontières, Operational Centre Brussels, Brussels, Belgium
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Hansun S, Argha A, Bakhshayeshi I, Wicaksana A, Alinejad-Rokny H, Fox GJ, Liaw ST, Celler BG, Marks GB. Diagnostic Performance of Artificial Intelligence-Based Methods for Tuberculosis Detection: Systematic Review. J Med Internet Res 2025; 27:e69068. [PMID: 40053773 PMCID: PMC11928776 DOI: 10.2196/69068] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2024] [Revised: 01/10/2025] [Accepted: 02/07/2025] [Indexed: 03/09/2025] Open
Abstract
BACKGROUND Tuberculosis (TB) remains a significant health concern, contributing to the highest mortality among infectious diseases worldwide. However, none of the various TB diagnostic tools introduced is deemed sufficient on its own for the diagnostic pathway, so various artificial intelligence (AI)-based methods have been developed to address this issue. OBJECTIVE We aimed to provide a comprehensive evaluation of AI-based algorithms for TB detection across various data modalities. METHODS Following PRISMA (Preferred Reporting Items for Systematic Reviews and Meta-Analysis) 2020 guidelines, we conducted a systematic review to synthesize current knowledge on this topic. Our search across 3 major databases (Scopus, PubMed, Association for Computing Machinery [ACM] Digital Library) yielded 1146 records, of which we included 152 (13.3%) studies in our analysis. QUADAS-2 (Quality Assessment of Diagnostic Accuracy Studies version 2) was performed for the risk-of-bias assessment of all included studies. RESULTS Radiographic biomarkers (n=129, 84.9%) and deep learning (DL; n=122, 80.3%) approaches were predominantly used, with convolutional neural networks (CNNs) using Visual Geometry Group (VGG)-16 (n=37, 24.3%), ResNet-50 (n=33, 21.7%), and DenseNet-121 (n=19, 12.5%) architectures being the most common DL approach. The majority of studies focused on model development (n=143, 94.1%) and used a single modality approach (n=141, 92.8%). AI methods demonstrated good performance in all studies: mean accuracy=91.93% (SD 8.10%, 95% CI 90.52%-93.33%; median 93.59%, IQR 88.33%-98.32%), mean area under the curve (AUC)=93.48% (SD 7.51%, 95% CI 91.90%-95.06%; median 95.28%, IQR 91%-99%), mean sensitivity=92.77% (SD 7.48%, 95% CI 91.38%-94.15%; median 94.05% IQR 89%-98.87%), and mean specificity=92.39% (SD 9.4%, 95% CI 90.30%-94.49%; median 95.38%, IQR 89.42%-99.19%). AI performance across different biomarker types showed mean accuracies of 92.45% (SD 7.83%), 89.03% (SD 8.49%), and 84.21% (SD 0%); mean AUCs of 94.47% (SD 7.32%), 88.45% (SD 8.33%), and 88.61% (SD 5.9%); mean sensitivities of 93.8% (SD 6.27%), 88.41% (SD 10.24%), and 93% (SD 0%); and mean specificities of 94.2% (SD 6.63%), 85.89% (SD 14.66%), and 95% (SD 0%) for radiographic, molecular/biochemical, and physiological types, respectively. AI performance across various reference standards showed mean accuracies of 91.44% (SD 7.3%), 93.16% (SD 6.44%), and 88.98% (SD 9.77%); mean AUCs of 90.95% (SD 7.58%), 94.89% (SD 5.18%), and 92.61% (SD 6.01%); mean sensitivities of 91.76% (SD 7.02%), 93.73% (SD 6.67%), and 91.34% (SD 7.71%); and mean specificities of 86.56% (SD 12.8%), 93.69% (SD 8.45%), and 92.7% (SD 6.54%) for bacteriological, human reader, and combined reference standards, respectively. The transfer learning (TL) approach showed increasing popularity (n=89, 58.6%). Notably, only 1 (0.7%) study conducted domain-shift analysis for TB detection. CONCLUSIONS Findings from this review underscore the considerable promise of AI-based methods in the realm of TB detection. Future research endeavors should prioritize conducting domain-shift analyses to better simulate real-world scenarios in TB detection. TRIAL REGISTRATION PROSPERO CRD42023453611; https://www.crd.york.ac.uk/PROSPERO/view/CRD42023453611.
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Affiliation(s)
- Seng Hansun
- School of Clinical Medicine, South West Sydney, UNSW Medicine & Health, UNSW Sydney, Sydney, Australia
- Woolcock Vietnam Research Group, Woolcock Institute of Medical Research, Sydney, Australia
| | - Ahmadreza Argha
- Graduate School of Biomedical Engineering, UNSW Sydney, Sydney, Australia
- Tyree Institute of Health Engineering, UNSW Sydney, Sydney, Australia
- Ageing Future Institute, UNSW Sydney, Sydney, Australia
| | - Ivan Bakhshayeshi
- Graduate School of Biomedical Engineering, UNSW Sydney, Sydney, Australia
- BioMedical Machine Learning Lab, Graduate School of Biomedical Engineering, UNSW Sydney, Sydney, Australia
| | - Arya Wicaksana
- Informatics Department, Universitas Multimedia Nusantara, Tangerang, Indonesia
| | - Hamid Alinejad-Rokny
- Tyree Institute of Health Engineering, UNSW Sydney, Sydney, Australia
- Ageing Future Institute, UNSW Sydney, Sydney, Australia
- BioMedical Machine Learning Lab, Graduate School of Biomedical Engineering, UNSW Sydney, Sydney, Australia
| | - Greg J Fox
- NHMRC Clinical Trials Centre, Faculty of Medicine and Health, University of Sydney, Sydney, Australia
| | - Siaw-Teng Liaw
- School of Population Health and School of Clinical Medicine, UNSW Sydney, Sydney, Australia
| | - Branko G Celler
- Biomedical Systems Research Laboratory, School of Electrical Engineering and Telecommunications, UNSW Sydney, Sydney, Australia
| | - Guy B Marks
- School of Clinical Medicine, South West Sydney, UNSW Medicine & Health, UNSW Sydney, Sydney, Australia
- Woolcock Vietnam Research Group, Woolcock Institute of Medical Research, Sydney, Australia
- Burnet Institute, Melbourne, Australia
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Hwang EJ, Goo JM, Park CM. AI Applications for Thoracic Imaging: Considerations for Best Practice. Radiology 2025; 314:e240650. [PMID: 39998373 DOI: 10.1148/radiol.240650] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/26/2025]
Abstract
Artificial intelligence (AI) technology is rapidly being introduced into thoracic radiology practice. Current representative use cases for AI in thoracic imaging show cumulative evidence of effectiveness. These include AI assistance for reading chest radiographs and low-dose (1.5-mSv) chest CT scans for lung cancer screening and triaging pulmonary embolism on chest CT scans. Other potential use cases are also under investigation, including filtering out normal chest radiographs, monitoring reading errors, and automated opportunistic screening of nontarget diseases. However, implementing AI tools in daily practice requires establishing practical strategies. Practical AI implementation will require objective on-site performance evaluation, institutional information technology infrastructure integration, and postdeployment monitoring. Meanwhile, the remaining challenges of adopting AI technology need to be addressed. These challenges include educating radiologists and radiology trainees, alleviating liability risk, and addressing potential disparities due to the uneven distribution of data and AI technology. Finally, next-generation AI technology represented by large language models (LLMs), including multimodal models, which can interpret both text and images, is expected to innovate the current landscape of AI in thoracic radiology practice. These LLMs offer opportunities ranging from generating text reports from images to explaining examination results to patients. However, these models require more research into their feasibility and efficacy.
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Affiliation(s)
- Eui Jin Hwang
- Department of Radiology, Seoul National University Hospital and Seoul National University College of Medicine, 101 Daehak-ro, Jongno-gu, Seoul 03080, Korea
| | - Jin Mo Goo
- Department of Radiology, Seoul National University Hospital and Seoul National University College of Medicine, 101 Daehak-ro, Jongno-gu, Seoul 03080, Korea
| | - Chang Min Park
- Department of Radiology, Seoul National University Hospital and Seoul National University College of Medicine, 101 Daehak-ro, Jongno-gu, Seoul 03080, Korea
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6
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van Beek EJR. AI Implementation in Thoracic Radiology: It Is Getting Closer. Radiology 2025; 314:e242592. [PMID: 39998370 DOI: 10.1148/radiol.242592] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/26/2025]
Affiliation(s)
- Edwin J R van Beek
- From the University of Edinburgh Centre for Cardiovascular Science-Edinburgh Imaging, Queen's Medical Research Institute, University of Edinburgh, 47 Little France Crescent, Edinburgh EH16 4TJ, UK
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Basu S, Chakraborty S. A Comprehensive Review of the Diagnostics for Pediatric Tuberculosis Based on Assay Time, Ease of Operation, and Performance. Microorganisms 2025; 13:178. [PMID: 39858947 PMCID: PMC11767579 DOI: 10.3390/microorganisms13010178] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2024] [Revised: 01/13/2025] [Accepted: 01/14/2025] [Indexed: 01/27/2025] Open
Abstract
Pediatric tuberculosis (TB) is still challenged by several diagnostic bottlenecks, imposing a high TB burden in low- and middle-income countries (LMICs). Diagnostic turnaround time (TAT) and ease of operation to suit resource-limited settings are critical aspects that determine early treatment and influence morbidity and mortality. Based on TAT and ease of operation, this article reviews the evolving landscape of TB diagnostics, from traditional methods like microscopy and culture to cutting-edge molecular techniques and biomarker-based approaches. We examined the benefits of efficient rapid results against potential trade-offs in accuracy and clinical utility. The review highlights emerging molecular methods and artificial intelligence-based detection methods, which offer promising improvements in both speed and sensitivity. The review also addresses the challenges of implementing these technologies in resource-limited settings, where most pediatric TB cases occur. Gaps in the existing diagnostic methods, algorithms, and operational costs were also reviewed. Developing optimal diagnostic strategies that balance speed, performance, cost, and feasibility in diverse healthcare settings can provide valuable insights for clinicians, researchers, and policymakers.
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Affiliation(s)
| | - Subhra Chakraborty
- Department of International Health, Bloomberg School of Public Health, Johns Hopkins University, Baltimore, MD 21205, USA;
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8
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Visu P, Sathiya V, Ajitha P, Surendran R. Enhanced swin transformer based tuberculosis classification with segmentation using chest X-ray. JOURNAL OF X-RAY SCIENCE AND TECHNOLOGY 2025; 33:167-186. [PMID: 39973770 DOI: 10.1177/08953996241300018] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/21/2025]
Abstract
BACKGROUND: Tuberculosis disease is the disease that causes significant morbidity and mortality worldwide. Thus, early detection of the disease is crucial for proper treatment and controlling the spread of Tuberculosis disease. Chest X-ray imaging is one of the most widely used diagnostic tools for detecting the Tuberculosis, which is time-consuming, and prone to errors. Nowadays, deep learning model provides the automated classification of medical images with promising outcome. OBJECTIVE: Thus, this research introduced a deep learning based segmentation and classification model. Initially, the Adaptive Gaussian Filtering based pre-processing and data augmentation is performed to remove artefacts and biased outcome. Then, Attention UNet (A_UNet) based segmentation is proposed for segmenting the required region of Chest X-ray. METHODS: Using the segmented outcome, Enhanced Swin Transformer (EnSTrans) model based Tuberculosis classification model is designed with Residual Pyramid Network based Multi-layer perceptron (MLP) layer for enhancing the classification accuracy. RESULTS: Enhanced Lotus Effect Optimization (EnLeO) Algorithm is employed for the loss function optimization of the EnSTrans model. CONCLUSIONS: The proposed methods acquired the Accuracy, Recall, Precision, F-score, and Specificity of 99.0576%, 98.9459%, 99.145%, 98.96%, and 99.152% respectively.
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Affiliation(s)
- P Visu
- Department of Artificial Intelligence and Data Science, Velammal Engineering College, Chennai, India
| | - V Sathiya
- Department of Computer Science and Engineering, Panimalar Engineering College, Chennai, India
| | - P Ajitha
- Department of Computer Science and Engineering, School of Computing, Sathyabama Institue of Science and Technology, Chennai, India
| | - R Surendran
- Department of Computer Science and Engineering, Saveetha School of Engineering, Saveetha Institute of Medical and Technical Sciences, Chennai, India
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Bagdad Y, Miteva MA. Recent Applications of Artificial Intelligence in Discovery of New Antibacterial Agents. Adv Appl Bioinform Chem 2024; 17:139-157. [PMID: 39650228 PMCID: PMC11624680 DOI: 10.2147/aabc.s484321] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2024] [Accepted: 10/25/2024] [Indexed: 12/11/2024] Open
Abstract
Antimicrobial resistance (AMR) represents today a major challenge for global public health, compromising the effectiveness of treatments against a multitude of bacterial infections. In recent decades, artificial intelligence (AI) has emerged as a promising technology for the identification and development of new antibacterial agents. This review focuses on AI methodologies applied to discover new antibacterial candidates. Case studies that identified small molecules and peptides showing antimicrobial activity and demonstrating efficiency against pathogenic resistant bacteria by employing AI are summarized. We also discuss the challenges and opportunities offered by AI, highlighting the importance of AI progress for the identification of new promising antibacterial drug candidates to combat the AMR.
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Affiliation(s)
- Youcef Bagdad
- Université Paris Cité, CNRS UMR 8038 CiTCoM, Inserm U1268 MCTR, Paris, France
| | - Maria A Miteva
- Université Paris Cité, CNRS UMR 8038 CiTCoM, Inserm U1268 MCTR, Paris, France
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Yang W, Gao S, Zhang H, Yu H, Xu M, Chong P, Zhang W, Wang H, Zhang W, Qian A. PtbNet: Based on Local Few-Shot Classes and Small Objects to Accurately Detect PTB. IEEE TRANSACTIONS ON MEDICAL IMAGING 2024; 43:4331-4343. [PMID: 38923480 DOI: 10.1109/tmi.2024.3419134] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/28/2024]
Abstract
Pulmonary Tuberculosis (PTB) is one of the world's most infectious illnesses, and its early detection is critical for preventing PTB. Digital Radiography (DR) has been the most common and effective technique to examine PTB. However, due to the variety and weak specificity of phenotypes on DR chest X-ray (DCR), it is difficult to make reliable diagnoses for radiologists. Although artificial intelligence technology has made considerable gains in assisting the diagnosis of PTB, it lacks methods to identify the lesions of PTB with few-shot classes and small objects. To solve these problems, geometric data augmentation was used to increase the size of the DCRs. For this purpose, a diffusion probability model was implemented for six few-shot classes. Importantly, we propose a new multi-lesion detector PtbNet based on RetinaNet, which was constructed to detect small objects of PTB lesions. The results showed that by two data augmentations, the number of DCRs increased by 80% from 570 to 2,859. In the pre-evaluation experiments with the baseline, RetinaNet, the AP improved by 9.9 for six few-shot classes. Our extensive empirical evaluation showed that the AP of PtbNet achieved 28.2, outperforming the other 9 state-of-the-art methods. In the ablation study, combined with BiFPN+ and PSPD-Conv, the AP increased by 2.1, APs increased by 5.0, and grew by an average of 9.8 in APm and APl. In summary, PtbNet not only improves the detection of small-object lesions but also enhances the ability to detect different types of PTB uniformly, which helps physicians diagnose PTB lesions accurately. The code is available at https://github.com/Wenhui-person/PtbNet/tree/master.
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Chung WY, Yoon J, Yoon D, Kim S, Kim Y, Park JE, Kang YA. Development and Validation of Deep Learning-Based Infectivity Prediction in Pulmonary Tuberculosis Through Chest Radiography: Retrospective Study. J Med Internet Res 2024; 26:e58413. [PMID: 39509691 PMCID: PMC11582483 DOI: 10.2196/58413] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2024] [Revised: 05/29/2024] [Accepted: 09/12/2024] [Indexed: 11/15/2024] Open
Abstract
BACKGROUND Pulmonary tuberculosis (PTB) poses a global health challenge owing to the time-intensive nature of traditional diagnostic tests such as smear and culture tests, which can require hours to weeks to yield results. OBJECTIVE This study aimed to use artificial intelligence (AI)-based chest radiography (CXR) to evaluate the infectivity of patients with PTB more quickly and accurately compared with traditional methods such as smear and culture tests. METHODS We used DenseNet121 and visualization techniques such as gradient-weighted class activation mapping and local interpretable model-agnostic explanations to demonstrate the decision-making process of the model. We analyzed 36,142 CXR images of 4492 patients with PTB obtained from Severance Hospital, focusing specifically on the lung region through segmentation and cropping with TransUNet. We used data from 2004 to 2020 to train the model, data from 2021 for testing, and data from 2022 to 2023 for internal validation. In addition, we used 1978 CXR images of 299 patients with PTB obtained from Yongin Severance Hospital for external validation. RESULTS In the internal validation, the model achieved an accuracy of 73.27%, an area under the receiver operating characteristic curve of 0.79, and an area under the precision-recall curve of 0.77. In the external validation, it exhibited an accuracy of 70.29%, an area under the receiver operating characteristic curve of 0.77, and an area under the precision-recall curve of 0.8. In addition, gradient-weighted class activation mapping and local interpretable model-agnostic explanations provided insights into the decision-making process of the AI model. CONCLUSIONS This proposed AI tool offers a rapid and accurate alternative for evaluating PTB infectivity through CXR, with significant implications for enhancing screening efficiency by evaluating infectivity before sputum test results in clinical settings, compared with traditional smear and culture tests.
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Affiliation(s)
- Wou Young Chung
- Department of Pulmonary and Critical Care Medicine, Ajou University School of Medicine, Suwon, Republic of Korea
| | - Jinsik Yoon
- Department of Integrative Medicine, Yonsei University College of Medicine, Seoul, Republic of Korea
| | - Dukyong Yoon
- Department of Biomedical Systems Informatics, Yonsei University College of Medicine, Seoul, Republic of Korea
- Institute for Innovation in Digital Healthcare, Severance Hospital, Seoul, Republic of Korea
- Center for Digital Health, Yongin Severance Hospital, Yonsei University Health System, Yongin, Republic of Korea
| | - Songsoo Kim
- Department of Biomedical Systems Informatics, Yonsei University College of Medicine, Seoul, Republic of Korea
| | - Yujeong Kim
- Department of Biomedical Systems Informatics, Yonsei University College of Medicine, Seoul, Republic of Korea
| | - Ji Eun Park
- Department of Pulmonary and Critical Care Medicine, Ajou University School of Medicine, Suwon, Republic of Korea
| | - Young Ae Kang
- Department of Internal Medicine, Yonsei University College of Medicine, Seoul, Republic of Korea
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Creswell J, Byrne RL, Garg T. TB or not TB: does AI have an answer for children? Eur Respir J 2024; 64:2401709. [PMID: 39510596 DOI: 10.1183/13993003.01709-2024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2024] [Accepted: 09/08/2024] [Indexed: 11/15/2024]
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Kazemzadeh S, Kiraly AP, Nabulsi Z, Sanjase N, Maimbolwa M, Shuma B, Jamshy S, Chen C, Agharwal A, Lau CT, Sellergren A, Golden D, Yu J, Wu E, Matias Y, Chou K, Corrado GS, Shetty S, Tse D, Eswaran K, Liu Y, Pilgrim R, Muyoyeta M, Prabhakara S. Prospective Multi-Site Validation of AI to Detect Tuberculosis and Chest X-Ray Abnormalities. NEJM AI 2024; 1:10.1056/aioa2400018. [PMID: 39823016 PMCID: PMC11737584 DOI: 10.1056/aioa2400018] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Indexed: 01/19/2025]
Abstract
BACKGROUND Using artificial intelligence (AI) to interpret chest X-rays (CXRs) could support accessible triage tests for active pulmonary tuberculosis (TB) in resource-constrained settings. METHODS The performance of two cloud-based CXR AI systems - one to detect TB and the other to detect CXR abnormalities - in a population with a high TB and human immunodeficiency virus (HIV) burden was evaluated. We recruited 1978 adults who had TB symptoms, were close contacts of known TB patients, or were newly diagnosed with HIV at three clinical sites. The TB-detecting AI (TB AI) scores were converted to binary using two thresholds: a high-sensitivity threshold and an exploratory threshold designed to resemble radiologist performance. Ten radiologists reviewed images for signs of TB, blinded to the reference standard. Primary analysis measured AI detection noninferiority to radiologist performance. Secondary analysis evaluated AI detection as compared with the World Health Organization (WHO) targets (90% sensitivity, 70% specificity). Both used an absolute margin of 5%. The abnormality-detecting AI (abnormality AI) was evaluated for noninferiority to a high-sensitivity target suitable for triaging (90% sensitivity, 50% specificity). RESULTS Of the 1910 patients analyzed, 1827 (96%) had conclusive TB status, of which 649 (36%) were HIV positive and 192 (11%) were TB positive. The TB AI's sensitivity and specificity were 87% and 70%, respectively, at the high-sensitivity threshold and 78% and 82%, respectively, at the balanced threshold. Radiologists' mean sensitivity was 76% and mean specificity was 82%. At the high-sensitivity threshold, the TB AI was noninferior to average radiologist sensitivity (P<0.001) but not to average radiologist specificity (P=0.99) and was higher than the WHO target for specificity but not sensitivity. At the balanced threshold, the TB AI was comparable to radiologists. The abnormality AI's sensitivity and specificity were 97% and 79%, respectively, with both meeting the prespecified targets. CONCLUSIONS The CXR TB AI was noninferior to radiologists for active pulmonary TB triaging in a population with a high TB and HIV burden. Neither the TB AI nor the radiologists met WHO recommendations for sensitivity in the study population. AI can also be used to detect other CXR abnormalities in the same population.
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Affiliation(s)
| | | | | | - Nsala Sanjase
- Centre for Infectious Disease Research in Zambia (CIDRZ), Lusaka, Zambia
| | - Minyoi Maimbolwa
- Centre for Infectious Disease Research in Zambia (CIDRZ), Lusaka, Zambia
| | - Brian Shuma
- Centre for Infectious Disease Research in Zambia (CIDRZ), Lusaka, Zambia
| | | | | | | | | | | | | | - Jin Yu
- Google, Mountain View, CA, USA
| | - Eric Wu
- Google, Mountain View, CA, USA
| | | | | | | | | | | | | | - Yun Liu
- Google, Mountain View, CA, USA
| | | | - Monde Muyoyeta
- Centre for Infectious Disease Research in Zambia (CIDRZ), Lusaka, Zambia
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14
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Sarantopoulos A, Mastori Kourmpani C, Yokarasa AL, Makamanzi C, Antoniou P, Spernovasilis N, Tsioutis C. Artificial Intelligence in Infectious Disease Clinical Practice: An Overview of Gaps, Opportunities, and Limitations. Trop Med Infect Dis 2024; 9:228. [PMID: 39453255 PMCID: PMC11511260 DOI: 10.3390/tropicalmed9100228] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2024] [Revised: 09/22/2024] [Accepted: 09/29/2024] [Indexed: 10/26/2024] Open
Abstract
The integration of artificial intelligence (AI) in clinical medicine marks a revolutionary shift, enhancing diagnostic accuracy, therapeutic efficacy, and overall healthcare delivery. This review explores the current uses, benefits, limitations, and future applications of AI in infectious diseases, highlighting its specific applications in diagnostics, clinical decision making, and personalized medicine. The transformative potential of AI in infectious diseases is emphasized, addressing gaps in rapid and accurate disease diagnosis, surveillance, outbreak detection and management, and treatment optimization. Despite these advancements, significant limitations and challenges exist, including data privacy concerns, potential biases, and ethical dilemmas. The article underscores the need for stringent regulatory frameworks and inclusive databases to ensure equitable, ethical, and effective AI utilization in the field of clinical and laboratory infectious diseases.
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Affiliation(s)
- Andreas Sarantopoulos
- School of Medicine, European University of Cyprus, 2404 Nicosia, Cyprus; (A.S.); (C.M.K.); (A.L.Y.); (C.M.); (P.A.)
- Brigham Women’s and Children Hospital, Boston, MA 02115, USA
| | - Christina Mastori Kourmpani
- School of Medicine, European University of Cyprus, 2404 Nicosia, Cyprus; (A.S.); (C.M.K.); (A.L.Y.); (C.M.); (P.A.)
| | - Atshaya Lily Yokarasa
- School of Medicine, European University of Cyprus, 2404 Nicosia, Cyprus; (A.S.); (C.M.K.); (A.L.Y.); (C.M.); (P.A.)
| | - Chiedza Makamanzi
- School of Medicine, European University of Cyprus, 2404 Nicosia, Cyprus; (A.S.); (C.M.K.); (A.L.Y.); (C.M.); (P.A.)
| | - Polyna Antoniou
- School of Medicine, European University of Cyprus, 2404 Nicosia, Cyprus; (A.S.); (C.M.K.); (A.L.Y.); (C.M.); (P.A.)
| | - Nikolaos Spernovasilis
- Department of Infectious Diseases, German Oncology Centre, 4108 Limassol, Cyprus;
- School of Medicine, University of Crete, 71110 Heraklion, Greece
| | - Constantinos Tsioutis
- School of Medicine, European University of Cyprus, 2404 Nicosia, Cyprus; (A.S.); (C.M.K.); (A.L.Y.); (C.M.); (P.A.)
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15
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Pacheco VMG, Paiva JPQ, Furriel BCRS, Santos PV, Ferreira Junior JR, Reis MRC, Tornieri D, Ribeiro GAS, Silva LO, Nogueira SA, Loureiro RM, Calixto WP. Pilot deployment of a cloud-based universal medical image repository in a large public health system: A protocol study. PLoS One 2024; 19:e0307022. [PMID: 39208265 PMCID: PMC11361589 DOI: 10.1371/journal.pone.0307022] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2024] [Accepted: 06/27/2024] [Indexed: 09/04/2024] Open
Abstract
This paper outlines the protocol for the deployment of a cloud-based universal medical image repository system. The proposal aims not only at the deployment but also at the automatic expansion of the platform, incorporating Artificial Intelligence (AI) for the analysis of medical image examinations. The methodology encompasses efficient data management through a universal database, along with the deployment of various AI models designed to assist in diagnostic decision-making. By presenting this protocol, the goal is to overcome technical challenges and issues that impact all phases of the workflow, from data management to the deployment of AI models in the healthcare sector. These challenges include ethical considerations, compliance with legal regulations, establishing user trust, and ensuring data security. The system has been deployed, with a tested and validated proof of concept, possessing the capability to receive thousands of images daily and to sustain the ongoing deployment of new AI models to expedite the analysis process in medical image exams.
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Affiliation(s)
- Viviane Margarida Gomes Pacheco
- Hospital Israelita Albert Einstein, Sao Paulo, Brazil
- Technology Research and Development Center (GCITE), Federal Institute of Goias, Goiania, Goias, Brazil
| | | | - Brunna Carolinne Rocha Silva Furriel
- Hospital Israelita Albert Einstein, Sao Paulo, Brazil
- Electrical, Mechanical & Computer Engineering School, Federal University of Goias, Goiania, Brazil
| | - Paulo Victor Santos
- Hospital Israelita Albert Einstein, Sao Paulo, Brazil
- Electrical, Mechanical & Computer Engineering School, Federal University of Goias, Goiania, Brazil
| | | | - Marcio Rodrigues Cunha Reis
- Hospital Israelita Albert Einstein, Sao Paulo, Brazil
- Technology Research and Development Center (GCITE), Federal Institute of Goias, Goiania, Goias, Brazil
| | | | | | | | | | | | - Wesley Pacheco Calixto
- Electrical, Mechanical & Computer Engineering School, Federal University of Goias, Goiania, Brazil
- Technology Research and Development Center (GCITE), Federal Institute of Goias, Goiania, Goias, Brazil
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16
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Lancaster AC, Cardin ME, Nguyen JA, Mehta TI, Oncel D, Bai HX, Cohen KA, Lin CT. Utilizing Deep Learning and Computed Tomography to Determine Pulmonary Nodule Activity in Patients With Nontuberculous Mycobacterial-Lung Disease. J Thorac Imaging 2024; 39:194-199. [PMID: 38640144 PMCID: PMC11031630 DOI: 10.1097/rti.0000000000000745] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/21/2024]
Abstract
PURPOSE To develop and evaluate a deep convolutional neural network (DCNN) model for the classification of acute and chronic lung nodules from nontuberculous mycobacterial-lung disease (NTM-LD) on computed tomography (CT). MATERIALS AND METHODS We collected a data set of 650 nodules (316 acute and 334 chronic) from the CT scans of 110 patients with NTM-LD. The data set was divided into training, validation, and test sets in a ratio of 4:1:1. Bounding boxes were used to crop the 2D CT images down to the area of interest. A DCNN model was built using 11 convolutional layers and trained on these images. The performance of the model was evaluated on the hold-out test set and compared with that of 3 radiologists who independently reviewed the images. RESULTS The DCNN model achieved an area under the receiver operating characteristic curve of 0.806 for differentiating acute and chronic NTM-LD nodules, corresponding to sensitivity, specificity, and accuracy of 76%, 68%, and 72%, respectively. The performance of the model was comparable to that of the 3 radiologists, who had area under the receiver operating characteristic curve, sensitivity, specificity, and accuracy of 0.693 to 0.771, 61% to 82%, 59% to 73%, and 60% to 73%, respectively. CONCLUSIONS This study demonstrated the feasibility of using a DCNN model for the classification of the activity of NTM-LD nodules on chest CT. The model performance was comparable to that of radiologists. This approach can potentially and efficiently improve the diagnosis and management of NTM-LD.
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Affiliation(s)
- Andrew C. Lancaster
- Division of Pulmonary and Critical Care Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, USA
- Department of Radiology and Radiological Science, Johns Hopkins University School of Medicine, Baltimore, MD, USA
| | - Mitchell E. Cardin
- Division of Pulmonary and Critical Care Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, USA
| | - Jan A. Nguyen
- Division of Pulmonary and Critical Care Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, USA
| | - Tej I. Mehta
- Department of Radiology and Radiological Science, Johns Hopkins University School of Medicine, Baltimore, MD, USA
| | - Dilek Oncel
- Department of Radiology and Radiological Science, Johns Hopkins University School of Medicine, Baltimore, MD, USA
| | - Harrison X. Bai
- Department of Radiology and Radiological Science, Johns Hopkins University School of Medicine, Baltimore, MD, USA
| | - Keira A. Cohen
- Division of Pulmonary and Critical Care Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, USA
| | - Cheng Ting Lin
- Department of Radiology and Radiological Science, Johns Hopkins University School of Medicine, Baltimore, MD, USA
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17
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Hwang EJ, Jeong WG, David PM, Arentz M, Ruhwald M, Yoon SH. AI for Detection of Tuberculosis: Implications for Global Health. Radiol Artif Intell 2024; 6:e230327. [PMID: 38197795 PMCID: PMC10982823 DOI: 10.1148/ryai.230327] [Citation(s) in RCA: 10] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2023] [Revised: 12/03/2023] [Accepted: 12/18/2023] [Indexed: 01/11/2024]
Abstract
Tuberculosis, which primarily affects developing countries, remains a significant global health concern. Since the 2010s, the role of chest radiography has expanded in tuberculosis triage and screening beyond its traditional complementary role in the diagnosis of tuberculosis. Computer-aided diagnosis (CAD) systems for tuberculosis detection on chest radiographs have recently made substantial progress in diagnostic performance, thanks to deep learning technologies. The current performance of CAD systems for tuberculosis has approximated that of human experts, presenting a potential solution to the shortage of human readers to interpret chest radiographs in low- or middle-income, high-tuberculosis-burden countries. This article provides a critical appraisal of developmental process reporting in extant CAD software for tuberculosis, based on the Checklist for Artificial Intelligence in Medical Imaging. It also explores several considerations to scale up CAD solutions, encompassing manufacturer-independent CAD validation, economic and political aspects, and ethical concerns, as well as the potential for broadening radiography-based diagnosis to other nontuberculosis diseases. Collectively, CAD for tuberculosis will emerge as a representative deep learning application, catalyzing advances in global health and health equity. Keywords: Computer-aided Diagnosis (CAD), Conventional Radiography, Thorax, Lung, Machine Learning Supplemental material is available for this article. © RSNA, 2024.
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Affiliation(s)
- Eui Jin Hwang
- From the Department of Radiology, Seoul National University Hospital
and Seoul National University College of Medicine, 101 Daehak-ro, Jongno-gu,
Seoul 03080, Korea (E.J.H., S.H.Y.); Department of Radiology, Chonnam National
University Hwasun Hospital, Hwasun, Korea (W.G.J.); Faculty of Pharmacy,
University of Montréal, Montréal, Canada (P.M.D.);
OBVIA–Observatoire sur les Impacts Sociétaux de l'IA et du
Numérique, Québec, Canada (P.M.D.); and FIND–The Global
Alliance for Diagnostics, Geneva, Switzerland (M.A., M.R.)
| | - Won Gi Jeong
- From the Department of Radiology, Seoul National University Hospital
and Seoul National University College of Medicine, 101 Daehak-ro, Jongno-gu,
Seoul 03080, Korea (E.J.H., S.H.Y.); Department of Radiology, Chonnam National
University Hwasun Hospital, Hwasun, Korea (W.G.J.); Faculty of Pharmacy,
University of Montréal, Montréal, Canada (P.M.D.);
OBVIA–Observatoire sur les Impacts Sociétaux de l'IA et du
Numérique, Québec, Canada (P.M.D.); and FIND–The Global
Alliance for Diagnostics, Geneva, Switzerland (M.A., M.R.)
| | - Pierre-Marie David
- From the Department of Radiology, Seoul National University Hospital
and Seoul National University College of Medicine, 101 Daehak-ro, Jongno-gu,
Seoul 03080, Korea (E.J.H., S.H.Y.); Department of Radiology, Chonnam National
University Hwasun Hospital, Hwasun, Korea (W.G.J.); Faculty of Pharmacy,
University of Montréal, Montréal, Canada (P.M.D.);
OBVIA–Observatoire sur les Impacts Sociétaux de l'IA et du
Numérique, Québec, Canada (P.M.D.); and FIND–The Global
Alliance for Diagnostics, Geneva, Switzerland (M.A., M.R.)
| | - Matthew Arentz
- From the Department of Radiology, Seoul National University Hospital
and Seoul National University College of Medicine, 101 Daehak-ro, Jongno-gu,
Seoul 03080, Korea (E.J.H., S.H.Y.); Department of Radiology, Chonnam National
University Hwasun Hospital, Hwasun, Korea (W.G.J.); Faculty of Pharmacy,
University of Montréal, Montréal, Canada (P.M.D.);
OBVIA–Observatoire sur les Impacts Sociétaux de l'IA et du
Numérique, Québec, Canada (P.M.D.); and FIND–The Global
Alliance for Diagnostics, Geneva, Switzerland (M.A., M.R.)
| | - Morten Ruhwald
- From the Department of Radiology, Seoul National University Hospital
and Seoul National University College of Medicine, 101 Daehak-ro, Jongno-gu,
Seoul 03080, Korea (E.J.H., S.H.Y.); Department of Radiology, Chonnam National
University Hwasun Hospital, Hwasun, Korea (W.G.J.); Faculty of Pharmacy,
University of Montréal, Montréal, Canada (P.M.D.);
OBVIA–Observatoire sur les Impacts Sociétaux de l'IA et du
Numérique, Québec, Canada (P.M.D.); and FIND–The Global
Alliance for Diagnostics, Geneva, Switzerland (M.A., M.R.)
| | - Soon Ho Yoon
- From the Department of Radiology, Seoul National University Hospital
and Seoul National University College of Medicine, 101 Daehak-ro, Jongno-gu,
Seoul 03080, Korea (E.J.H., S.H.Y.); Department of Radiology, Chonnam National
University Hwasun Hospital, Hwasun, Korea (W.G.J.); Faculty of Pharmacy,
University of Montréal, Montréal, Canada (P.M.D.);
OBVIA–Observatoire sur les Impacts Sociétaux de l'IA et du
Numérique, Québec, Canada (P.M.D.); and FIND–The Global
Alliance for Diagnostics, Geneva, Switzerland (M.A., M.R.)
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18
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Liang S, Xu X, Yang Z, Du Q, Zhou L, Shao J, Guo J, Ying B, Li W, Wang C. Deep learning for precise diagnosis and subtype triage of drug-resistant tuberculosis on chest computed tomography. MedComm (Beijing) 2024; 5:e487. [PMID: 38469547 PMCID: PMC10925488 DOI: 10.1002/mco2.487] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2023] [Revised: 01/08/2024] [Accepted: 01/09/2024] [Indexed: 03/13/2024] Open
Abstract
Deep learning, transforming input data into target prediction through intricate network structures, has inspired novel exploration in automated diagnosis based on medical images. The distinct morphological characteristics of chest abnormalities between drug-resistant tuberculosis (DR-TB) and drug-sensitive tuberculosis (DS-TB) on chest computed tomography (CT) are of potential value in differential diagnosis, which is challenging in the clinic. Hence, based on 1176 chest CT volumes from the equal number of patients with tuberculosis (TB), we presented a Deep learning-based system for TB drug resistance identification and subtype classification (DeepTB), which could automatically diagnose DR-TB and classify crucial subtypes, including rifampicin-resistant tuberculosis, multidrug-resistant tuberculosis, and extensively drug-resistant tuberculosis. Moreover, chest lesions were manually annotated to endow the model with robust power to assist radiologists in image interpretation and the Circos revealed the relationship between chest abnormalities and specific types of DR-TB. Finally, DeepTB achieved an area under the curve (AUC) up to 0.930 for thoracic abnormality detection and 0.943 for DR-TB diagnosis. Notably, the system demonstrated instructive value in DR-TB subtype classification with AUCs ranging from 0.880 to 0.928. Meanwhile, class activation maps were generated to express a human-understandable visual concept. Together, showing a prominent performance, DeepTB would be impactful in clinical decision-making for DR-TB.
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Affiliation(s)
- Shufan Liang
- Department of Pulmonary and Critical Care MedicineState Key Laboratory of Respiratory Health and Multimorbidity, Targeted Tracer Research and Development Laboratory, Med‐X Center for Manufacturing, Frontiers Science Center for Disease‐related Molecular Network, West China Hospital, West China School of Medicine, Sichuan UniversityChengduChina
| | - Xiuyuan Xu
- Machine Intelligence LaboratoryCollege of Computer ScienceSichuan UniversityChengduChina
| | - Zhe Yang
- Machine Intelligence LaboratoryCollege of Computer ScienceSichuan UniversityChengduChina
| | - Qiuyu Du
- Machine Intelligence LaboratoryCollege of Computer ScienceSichuan UniversityChengduChina
| | - Lingyu Zhou
- Machine Intelligence LaboratoryCollege of Computer ScienceSichuan UniversityChengduChina
| | - Jun Shao
- Department of Pulmonary and Critical Care MedicineState Key Laboratory of Respiratory Health and Multimorbidity, Targeted Tracer Research and Development Laboratory, Med‐X Center for Manufacturing, Frontiers Science Center for Disease‐related Molecular Network, West China Hospital, West China School of Medicine, Sichuan UniversityChengduChina
| | - Jixiang Guo
- Machine Intelligence LaboratoryCollege of Computer ScienceSichuan UniversityChengduChina
| | - Binwu Ying
- Department of Laboratory MedicineWest China Hospital, Sichuan UniversityChengduChina
| | - Weimin Li
- Department of Pulmonary and Critical Care MedicineState Key Laboratory of Respiratory Health and Multimorbidity, Targeted Tracer Research and Development Laboratory, Med‐X Center for Manufacturing, Frontiers Science Center for Disease‐related Molecular Network, West China Hospital, West China School of Medicine, Sichuan UniversityChengduChina
| | - Chengdi Wang
- Department of Pulmonary and Critical Care MedicineState Key Laboratory of Respiratory Health and Multimorbidity, Targeted Tracer Research and Development Laboratory, Med‐X Center for Manufacturing, Frontiers Science Center for Disease‐related Molecular Network, West China Hospital, West China School of Medicine, Sichuan UniversityChengduChina
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19
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Singh S, Kumar M, Kumar A, Verma BK, Abhishek K, Selvarajan S. Efficient pneumonia detection using Vision Transformers on chest X-rays. Sci Rep 2024; 14:2487. [PMID: 38291130 PMCID: PMC10827725 DOI: 10.1038/s41598-024-52703-2] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2023] [Accepted: 01/22/2024] [Indexed: 02/01/2024] Open
Abstract
Pneumonia is a widespread and acute respiratory infection that impacts people of all ages. Early detection and treatment of pneumonia are essential for avoiding complications and enhancing clinical results. We can reduce mortality, improve healthcare efficiency, and contribute to the global battle against a disease that has plagued humanity for centuries by devising and deploying effective detection methods. Detecting pneumonia is not only a medical necessity but also a humanitarian imperative and a technological frontier. Chest X-rays are a frequently used imaging modality for diagnosing pneumonia. This paper examines in detail a cutting-edge method for detecting pneumonia implemented on the Vision Transformer (ViT) architecture on a public dataset of chest X-rays available on Kaggle. To acquire global context and spatial relationships from chest X-ray images, the proposed framework deploys the ViT model, which integrates self-attention mechanisms and transformer architecture. According to our experimentation with the proposed Vision Transformer-based framework, it achieves a higher accuracy of 97.61%, sensitivity of 95%, and specificity of 98% in detecting pneumonia from chest X-rays. The ViT model is preferable for capturing global context, comprehending spatial relationships, and processing images that have different resolutions. The framework establishes its efficacy as a robust pneumonia detection solution by surpassing convolutional neural network (CNN) based architectures.
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Affiliation(s)
| | - Manoj Kumar
- JSS Academy of Technical Education, Noida, India
| | - Abhay Kumar
- National Institute of Technology Patna, Patna, India
| | | | | | - Shitharth Selvarajan
- School of Built Environment, Engineering and Computing, Leeds Beckett University, LS1 3HE, Leeds, UK.
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20
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Savage N. Tracking down tuberculosis. Nature 2024:10.1038/d41586-024-00087-8. [PMID: 38273057 DOI: 10.1038/d41586-024-00087-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2024]
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21
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Thu NQ, Tien NTN, Yen NTH, Duong TH, Long NP, Nguyen HT. Push forward LC-MS-based therapeutic drug monitoring and pharmacometabolomics for anti-tuberculosis precision dosing and comprehensive clinical management. J Pharm Anal 2024; 14:16-38. [PMID: 38352944 PMCID: PMC10859566 DOI: 10.1016/j.jpha.2023.09.009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2023] [Revised: 08/25/2023] [Accepted: 09/18/2023] [Indexed: 02/16/2024] Open
Abstract
The spread of tuberculosis (TB), especially multidrug-resistant TB and extensively drug-resistant TB, has strongly motivated the research and development of new anti-TB drugs. New strategies to facilitate drug combinations, including pharmacokinetics-guided dose optimization and toxicology studies of first- and second-line anti-TB drugs have also been introduced and recommended. Liquid chromatography-mass spectrometry (LC-MS) has arguably become the gold standard in the analysis of both endo- and exo-genous compounds. This technique has been applied successfully not only for therapeutic drug monitoring (TDM) but also for pharmacometabolomics analysis. TDM improves the effectiveness of treatment, reduces adverse drug reactions, and the likelihood of drug resistance development in TB patients by determining dosage regimens that produce concentrations within the therapeutic target window. Based on TDM, the dose would be optimized individually to achieve favorable outcomes. Pharmacometabolomics is essential in generating and validating hypotheses regarding the metabolism of anti-TB drugs, aiding in the discovery of potential biomarkers for TB diagnostics, treatment monitoring, and outcome evaluation. This article highlighted the current progresses in TDM of anti-TB drugs based on LC-MS bioassay in the last two decades. Besides, we discussed the advantages and disadvantages of this technique in practical use. The pressing need for non-invasive sampling approaches and stability studies of anti-TB drugs was highlighted. Lastly, we provided perspectives on the prospects of combining LC-MS-based TDM and pharmacometabolomics with other advanced strategies (pharmacometrics, drug and vaccine developments, machine learning/artificial intelligence, among others) to encapsulate in an all-inclusive approach to improve treatment outcomes of TB patients.
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Affiliation(s)
- Nguyen Quang Thu
- Department of Pharmacology and PharmacoGenomics Research Center, Inje University College of Medicine, Busan, 47392, Republic of Korea
| | - Nguyen Tran Nam Tien
- Department of Pharmacology and PharmacoGenomics Research Center, Inje University College of Medicine, Busan, 47392, Republic of Korea
| | - Nguyen Thi Hai Yen
- Department of Pharmacology and PharmacoGenomics Research Center, Inje University College of Medicine, Busan, 47392, Republic of Korea
| | - Thuc-Huy Duong
- Department of Chemistry, University of Education, Ho Chi Minh City, 700000, Viet Nam
| | - Nguyen Phuoc Long
- Department of Pharmacology and PharmacoGenomics Research Center, Inje University College of Medicine, Busan, 47392, Republic of Korea
| | - Huy Truong Nguyen
- Faculty of Pharmacy, Ton Duc Thang University, Ho Chi Minh City, 700000, Viet Nam
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22
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Creswell J, Vo LNQ, Qin ZZ, Muyoyeta M, Tovar M, Wong EB, Ahmed S, Vijayan S, John S, Maniar R, Rahman T, MacPherson P, Banu S, Codlin AJ. Early user perspectives on using computer-aided detection software for interpreting chest X-ray images to enhance access and quality of care for persons with tuberculosis. BMC GLOBAL AND PUBLIC HEALTH 2023; 1:30. [PMID: 39681961 DOI: 10.1186/s44263-023-00033-2] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/11/2023] [Accepted: 12/06/2023] [Indexed: 12/18/2024]
Abstract
Despite 30 years as a public health emergency, tuberculosis (TB) remains one of the world's deadliest diseases. Most deaths are among persons with TB who are not reached with diagnosis and treatment. Thus, timely screening and accurate detection of TB, particularly using sensitive tools such as chest radiography, is crucial for reducing the global burden of this disease. However, lack of qualified human resources represents a common limiting factor in many high TB-burden countries. Artificial intelligence (AI) has emerged as a powerful complement in many facets of life, including for the interpretation of chest X-ray images. However, while AI may serve as a viable alternative to human radiographers and radiologists, there is a high likelihood that those suffering from TB will not reap the benefits of this technological advance without appropriate, clinically effective use and cost-conscious deployment. The World Health Organization recommended the use of AI for TB screening in 2021, and early adopters of the technology have been using the technology in many ways. In this manuscript, we present a compilation of early user experiences from nine high TB-burden countries focused on practical considerations and best practices related to deployment, threshold and use case selection, and scale-up. While we offer technical and operational guidance on the use of AI for interpreting chest X-ray images for TB detection, our aim remains to maximize the benefit that programs, implementers, and ultimately TB-affected individuals can derive from this innovative technology.
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Affiliation(s)
| | - Luan Nguyen Quang Vo
- Friends for International TB Relief (FIT), Hanoi, Vietnam
- Department of Global Health, WHO Collaboration Centre On Tuberculosis and Social Medicine, Karolinska Institutet, Stockholm, Sweden
| | | | - Monde Muyoyeta
- Centre for Infectious Disease Research in Zambia, Lusaka, Zambia
| | | | - Emily Beth Wong
- Africa Health Research Institute, KwaZulu-Natal, South Africa
- Division of Infectious Diseases, Heersink School of Medicine, University of Alabama Birmingham, Birmingham, AL, USA
| | - Shahriar Ahmed
- International Centre for Diarrhoeal Disease Research, Bangladesh (icddr,b), Dhaka, Bangladesh
| | | | | | - Rabia Maniar
- Interactive Research and Development (IRD) Pakistan, Karachi, Pakistan
| | | | - Peter MacPherson
- School of Health & Wellbeing, University of Glasgow, Glasgow, UK
- Malawi-Liverpool-Wellcome Trust Clinical Research Programme, Blantyre, Malawi
- London School of Hygiene & Tropical Medicine, London, UK
| | - Sayera Banu
- International Centre for Diarrhoeal Disease Research, Bangladesh (icddr,b), Dhaka, Bangladesh
| | - Andrew James Codlin
- Friends for International TB Relief (FIT), Hanoi, Vietnam
- Department of Global Health, WHO Collaboration Centre On Tuberculosis and Social Medicine, Karolinska Institutet, Stockholm, Sweden
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23
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Krishnan G, Singh S, Pathania M, Gosavi S, Abhishek S, Parchani A, Dhar M. Artificial intelligence in clinical medicine: catalyzing a sustainable global healthcare paradigm. Front Artif Intell 2023; 6:1227091. [PMID: 37705603 PMCID: PMC10497111 DOI: 10.3389/frai.2023.1227091] [Citation(s) in RCA: 78] [Impact Index Per Article: 39.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2023] [Accepted: 08/09/2023] [Indexed: 09/15/2023] Open
Abstract
As the demand for quality healthcare increases, healthcare systems worldwide are grappling with time constraints and excessive workloads, which can compromise the quality of patient care. Artificial intelligence (AI) has emerged as a powerful tool in clinical medicine, revolutionizing various aspects of patient care and medical research. The integration of AI in clinical medicine has not only improved diagnostic accuracy and treatment outcomes, but also contributed to more efficient healthcare delivery, reduced costs, and facilitated better patient experiences. This review article provides an extensive overview of AI applications in history taking, clinical examination, imaging, therapeutics, prognosis and research. Furthermore, it highlights the critical role AI has played in transforming healthcare in developing nations.
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Affiliation(s)
- Gokul Krishnan
- Department of Internal Medicine, Kasturba Medical College, Manipal, India
| | - Shiana Singh
- Department of Emergency Medicine, All India Institute of Medical Sciences, Rishikesh, India
| | - Monika Pathania
- Department of Geriatric Medicine, All India Institute of Medical Sciences, Rishikesh, India
| | - Siddharth Gosavi
- Department of Internal Medicine, Kasturba Medical College, Manipal, India
| | - Shuchi Abhishek
- Department of Internal Medicine, Kasturba Medical College, Manipal, India
| | - Ashwin Parchani
- Department of Geriatric Medicine, All India Institute of Medical Sciences, Rishikesh, India
| | - Minakshi Dhar
- Department of Geriatric Medicine, All India Institute of Medical Sciences, Rishikesh, India
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24
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Feyisa DW, Ayano YM, Debelee TG, Schwenker F. Weak Localization of Radiographic Manifestations in Pulmonary Tuberculosis from Chest X-ray: A Systematic Review. SENSORS (BASEL, SWITZERLAND) 2023; 23:6781. [PMID: 37571564 PMCID: PMC10422452 DOI: 10.3390/s23156781] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/15/2023] [Revised: 07/03/2023] [Accepted: 07/14/2023] [Indexed: 08/13/2023]
Abstract
Pulmonary tuberculosis (PTB) is a bacterial infection that affects the lung. PTB remains one of the infectious diseases with the highest global mortalities. Chest radiography is a technique that is often employed in the diagnosis of PTB. Radiologists identify the severity and stage of PTB by inspecting radiographic features in the patient's chest X-ray (CXR). The most common radiographic features seen on CXRs include cavitation, consolidation, masses, pleural effusion, calcification, and nodules. Identifying these CXR features will help physicians in diagnosing a patient. However, identifying these radiographic features for intricate disorders is challenging, and the accuracy depends on the radiologist's experience and level of expertise. So, researchers have proposed deep learning (DL) techniques to detect and mark areas of tuberculosis infection in CXRs. DL models have been proposed in the literature because of their inherent capacity to detect diseases and segment the manifestation regions from medical images. However, fully supervised semantic segmentation requires several pixel-by-pixel labeled images. The annotation of such a large amount of data by trained physicians has some challenges. First, the annotation requires a significant amount of time. Second, the cost of hiring trained physicians is expensive. In addition, the subjectivity of medical data poses a difficulty in having standardized annotation. As a result, there is increasing interest in weak localization techniques. Therefore, in this review, we identify methods employed in the weakly supervised segmentation and localization of radiographic manifestations of pulmonary tuberculosis from chest X-rays. First, we identify the most commonly used public chest X-ray datasets for tuberculosis identification. Following that, we discuss the approaches for weakly localizing tuberculosis radiographic manifestations in chest X-rays. The weakly supervised localization of PTB can highlight the region of the chest X-ray image that contributed the most to the DL model's classification output and help pinpoint the diseased area. Finally, we discuss the limitations and challenges of weakly supervised techniques in localizing TB manifestations regions in chest X-ray images.
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Affiliation(s)
- Degaga Wolde Feyisa
- Ethiopian Artificial Intelligence Institute, Addis Ababa P.O. Box 40782, Ethiopia; (D.W.F.); (Y.M.A.); (T.G.D.)
| | - Yehualashet Megersa Ayano
- Ethiopian Artificial Intelligence Institute, Addis Ababa P.O. Box 40782, Ethiopia; (D.W.F.); (Y.M.A.); (T.G.D.)
| | - Taye Girma Debelee
- Ethiopian Artificial Intelligence Institute, Addis Ababa P.O. Box 40782, Ethiopia; (D.W.F.); (Y.M.A.); (T.G.D.)
- Department of Electrical and Computer Engineering, Addis Ababa Science and Technology University, Addis Ababa P.O. Box 120611, Ethiopia
| | - Friedhelm Schwenker
- Institute of Neural Information Processing, Ulm University, 89069 Ulm, Germany
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25
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A review of deep learning-based multiple-lesion recognition from medical images: classification, detection and segmentation. Comput Biol Med 2023; 157:106726. [PMID: 36924732 DOI: 10.1016/j.compbiomed.2023.106726] [Citation(s) in RCA: 37] [Impact Index Per Article: 18.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2022] [Revised: 02/07/2023] [Accepted: 02/27/2023] [Indexed: 03/05/2023]
Abstract
Deep learning-based methods have become the dominant methodology in medical image processing with the advancement of deep learning in natural image classification, detection, and segmentation. Deep learning-based approaches have proven to be quite effective in single lesion recognition and segmentation. Multiple-lesion recognition is more difficult than single-lesion recognition due to the little variation between lesions or the too wide range of lesions involved. Several studies have recently explored deep learning-based algorithms to solve the multiple-lesion recognition challenge. This paper includes an in-depth overview and analysis of deep learning-based methods for multiple-lesion recognition developed in recent years, including multiple-lesion recognition in diverse body areas and recognition of whole-body multiple diseases. We discuss the challenges that still persist in the multiple-lesion recognition tasks by critically assessing these efforts. Finally, we outline existing problems and potential future research areas, with the hope that this review will help researchers in developing future approaches that will drive additional advances.
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26
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Talat A, Khan AU. Artificial intelligence as a smart approach to develop antimicrobial drug molecules: A paradigm to combat drug-resistant infections. Drug Discov Today 2023; 28:103491. [PMID: 36646245 DOI: 10.1016/j.drudis.2023.103491] [Citation(s) in RCA: 20] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2022] [Revised: 01/01/2023] [Accepted: 01/05/2023] [Indexed: 01/15/2023]
Abstract
Antimicrobial resistance (AMR) is a silent pandemic with the third highest global mortality. The antibiotic development pipeline is scarce even though AMR has escalated uncontrollably. Artificial intelligence (AI) is a revolutionary approach, accelerating drug discovery because of its fast pace, cost efficiency, lower labor requirements, and fewer chances of failure. AI has been used to discover several beta-lactamase inhibitors and antibiotic alternatives from antimicrobial peptides (AMPs), nonribosomal peptides, bacteriocins, and marine natural products. The significant recent increase in the use of AI platforms by pharmaceutical companies could result in the discovery of efficient antibiotic alternatives with lower chances of resistance generation.
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Affiliation(s)
- Absar Talat
- Medical Microbiology and Molecular Biology Laboratory, Interdisciplinary Biotechnology Unit, Aligarh Muslim University, Aligarh, India
| | - Asad U Khan
- Medical Microbiology and Molecular Biology Laboratory, Interdisciplinary Biotechnology Unit, Aligarh Muslim University, Aligarh, India.
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27
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Zhan Y, Wang Y, Zhang W, Ying B, Wang C. Diagnostic Accuracy of the Artificial Intelligence Methods in Medical Imaging for Pulmonary Tuberculosis: A Systematic Review and Meta-Analysis. J Clin Med 2022; 12:303. [PMID: 36615102 PMCID: PMC9820940 DOI: 10.3390/jcm12010303] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2022] [Revised: 12/21/2022] [Accepted: 12/24/2022] [Indexed: 01/03/2023] Open
Abstract
Tuberculosis (TB) remains one of the leading causes of death among infectious diseases worldwide. Early screening and diagnosis of pulmonary tuberculosis (PTB) is crucial in TB control, and tend to benefit from artificial intelligence. Here, we aimed to evaluate the diagnostic efficacy of a variety of artificial intelligence methods in medical imaging for PTB. We searched MEDLINE and Embase with the OVID platform to identify trials published update to November 2022 that evaluated the effectiveness of artificial-intelligence-based software in medical imaging of patients with PTB. After data extraction, the quality of studies was assessed using quality assessment of diagnostic accuracy studies 2 (QUADAS-2). Pooled sensitivity and specificity were estimated using a bivariate random-effects model. In total, 3987 references were initially identified and 61 studies were finally included, covering a wide range of 124,959 individuals. The pooled sensitivity and the specificity were 91% (95% confidence interval (CI), 89-93%) and 65% (54-75%), respectively, in clinical trials, and 94% (89-96%) and 95% (91-97%), respectively, in model-development studies. These findings have demonstrated that artificial-intelligence-based software could serve as an accurate tool to diagnose PTB in medical imaging. However, standardized reporting guidance regarding AI-specific trials and multicenter clinical trials is urgently needed to truly transform this cutting-edge technology into clinical practice.
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Affiliation(s)
- Yuejuan Zhan
- Department of Respiratory and Critical Care Medicine, West China Medical School/West China Hospital, Sichuan University, Chengdu 610041, China
| | - Yuqi Wang
- Department of Respiratory and Critical Care Medicine, West China Medical School/West China Hospital, Sichuan University, Chengdu 610041, China
| | - Wendi Zhang
- Department of Respiratory and Critical Care Medicine, West China Medical School/West China Hospital, Sichuan University, Chengdu 610041, China
| | - Binwu Ying
- Department of Laboratory Medicine, West China Medical School/West China Hospital, Sichuan University, Chengdu 610041, China
| | - Chengdi Wang
- Department of Respiratory and Critical Care Medicine, West China Medical School/West China Hospital, Sichuan University, Chengdu 610041, China
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