1
|
Musa IH, Afolabi LO, Zamit I, Musa TH, Musa HH, Tassang A, Akintunde TY, Li W. Artificial Intelligence and Machine Learning in Cancer Research: A Systematic and Thematic Analysis of the Top 100 Cited Articles Indexed in Scopus Database. Cancer Control 2022; 29:10732748221095946. [PMID: 35688650 PMCID: PMC9189515 DOI: 10.1177/10732748221095946] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023] Open
Abstract
INTRODUCTION Cancer is a major public health problem and a global leading cause of death where the screening, diagnosis, prediction, survival estimation, and treatment of cancer and control measures are still a major challenge. The rise of Artificial Intelligence (AI) and Machine Learning (ML) techniques and their applications in various fields have brought immense value in providing insights into advancement in support of cancer control. METHODS A systematic and thematic analysis was performed on the Scopus database to identify the top 100 cited articles in cancer research. Data were analyzed using RStudio and VOSviewer.Var1.6.6. RESULTS The top 100 articles in AI and ML in cancer received a 33 920 citation score with a range of 108 to 5758 times. Doi Kunio from the USA was the most cited author with total number of citations (TNC = 663). Out of 43 contributed countries, 30% of the top 100 cited articles originated from the USA, and 10% originated from China. Among the 57 peer-reviewed journals, the "Expert Systems with Application" published 8% of the total articles. The results were presented in highlight technological advancement through AI and ML via the widespread use of Artificial Neural Network (ANNs), Deep Learning or machine learning techniques, Mammography-based Model, Convolutional Neural Networks (SC-CNN), and text mining techniques in the prediction, diagnosis, and prevention of various types of cancers towards cancer control. CONCLUSIONS This bibliometric study provides detailed overview of the most cited empirical evidence in AI and ML adoption in cancer research that could efficiently help in designing future research. The innovations guarantee greater speed by using AI and ML in the detection and control of cancer to improve patient experience.
Collapse
Affiliation(s)
- Ibrahim H. Musa
- Department of Software Engineering, School of Computer Science and Engineering, Southeast University, Nanjing, China
- Key Laboratory of Computer Network and Information Integration, Ministry of Education, Southeast University, Nanjing, China
| | - Lukman O. Afolabi
- Guangdong Immune Cell Therapy Engineering and Technology Research Center, Center for Protein and Cell-Based Drugs, Institute of Biomedicine and Biotechnology, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Ibrahim Zamit
- University of Chinese Academy of Sciences, Beijing, China
- Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, Guangdong, China
| | - Taha H. Musa
- Biomedical Research Institute, Darfur University College, Nyala, South Darfur, Sudan
- Key Laboratory of Environmental Medicine Engineering, Ministry of Education, Department of Epidemiology and Health Statistics, School of Public Health, Southeast University, Nanjing, Jiangsu Province, China
| | - Hassan H. Musa
- Faculty of Medical Laboratory Sciences, University of Khartoum, Khartoum, Sudan
| | - Andrew Tassang
- Faculty of Health Sciences, University of Buea, Cameroon
- Buea Regional Hospital, Annex, Cameroon
| | - Tosin Y. Akintunde
- Department of Sociology, School of Public Administration, Hohai University, Nanjing, China
| | - Wei Li
- Department of quality management, Children’s hospital of Nanjing Medical University, Nanjing, China
| |
Collapse
|
2
|
Lustgarten JL, Zehnder A, Shipman W, Gancher E, Webb TL. Veterinary informatics: forging the future between veterinary medicine, human medicine, and One Health initiatives-a joint paper by the Association for Veterinary Informatics (AVI) and the CTSA One Health Alliance (COHA). JAMIA Open 2020; 3:306-317. [PMID: 32734172 PMCID: PMC7382640 DOI: 10.1093/jamiaopen/ooaa005] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2019] [Revised: 12/26/2019] [Accepted: 02/26/2020] [Indexed: 12/25/2022] Open
Abstract
Objectives This manuscript reviews the current state of veterinary medical electronic health records and the ability to aggregate and analyze large datasets from multiple organizations and clinics. We also review analytical techniques as well as research efforts into veterinary informatics with a focus on applications relevant to human and animal medicine. Our goal is to provide references and context for these resources so that researchers can identify resources of interest and translational opportunities to advance the field. Methods and Results This review covers various methods of veterinary informatics including natural language processing and machine learning techniques in brief and various ongoing and future projects. After detailing techniques and sources of data, we describe some of the challenges and opportunities within veterinary informatics as well as providing reviews of common One Health techniques and specific applications that affect both humans and animals. Discussion Current limitations in the field of veterinary informatics include limited sources of training data for developing machine learning and artificial intelligence algorithms, siloed data between academic institutions, corporate institutions, and many small private practices, and inconsistent data formats that make many integration problems difficult. Despite those limitations, there have been significant advancements in the field in the last few years and continued development of a few, key, large data resources that are available for interested clinicians and researchers. These real-world use cases and applications show current and significant future potential as veterinary informatics grows in importance. Veterinary informatics can forge new possibilities within veterinary medicine and between veterinary medicine, human medicine, and One Health initiatives.
Collapse
Affiliation(s)
- Jonathan L Lustgarten
- Association for Veterinary Informatics, Dixon, California, USA.,VCA Inc., Health Technology & Informatics, Los Angeles, California, USA
| | | | - Wayde Shipman
- Veterinary Medical Databases, Columbia, Missouri, USA
| | - Elizabeth Gancher
- Department of Infectious diseases and HIV medicine, Drexel University College of Medicine, Philadelphia, Pennsylvania, USA
| | - Tracy L Webb
- Department of Clinical Sciences, Colorado State University, Fort Collins, Colorado, USA
| |
Collapse
|
3
|
Liu SL, Li S, Guo YT, Zhou YP, Zhang ZD, Li S, Lu Y. Establishment and application of an artificial intelligence diagnosis system for pancreatic cancer with a faster region-based convolutional neural network. Chin Med J (Engl) 2019; 132:2795-2803. [PMID: 31856050 PMCID: PMC6940082 DOI: 10.1097/cm9.0000000000000544] [Citation(s) in RCA: 43] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2019] [Indexed: 12/22/2022] Open
Abstract
BACKGROUND Early diagnosis and accurate staging are important to improve the cure rate and prognosis for pancreatic cancer. This study was performed to develop an automatic and accurate imaging processing technique system, allowing this system to read computed tomography (CT) images correctly and make diagnosis of pancreatic cancer faster. METHODS The establishment of the artificial intelligence (AI) system for pancreatic cancer diagnosis based on sequential contrast-enhanced CT images were composed of two processes: training and verification. During training process, our study used all 4385 CT images from 238 pancreatic cancer patients in the database as the training data set. Additionally, we used VGG16, which was pre-trained in ImageNet and contained 13 convolutional layers and three fully connected layers, to initialize the feature extraction network. In the verification experiment, we used sequential clinical CT images from 238 pancreatic cancer patients as our experimental data and input these data into the faster region-based convolution network (Faster R-CNN) model that had completed training. Totally, 1699 images from 100 pancreatic cancer patients were included for clinical verification. RESULTS A total of 338 patients with pancreatic cancer were included in the study. The clinical characteristics (sex, age, tumor location, differentiation grade, and tumor-node-metastasis stage) between the two training and verification groups were insignificant. The mean average precision was 0.7664, indicating a good training effect of the Faster R-CNN. Sequential contrast-enhanced CT images of 100 pancreatic cancer patients were used for clinical verification. The area under the receiver operating characteristic curve calculated according to the trapezoidal rule was 0.9632. It took approximately 0.2 s for the Faster R-CNN AI to automatically process one CT image, which is much faster than the time required for diagnosis by an imaging specialist. CONCLUSIONS Faster R-CNN AI is an effective and objective method with high accuracy for the diagnosis of pancreatic cancer. TRIAL REGISTRATION ChiCTR1800017542; http://www.chictr.org.cn.
Collapse
Affiliation(s)
- Shang-Long Liu
- Department of General Surgery, Affiliated Hospital of Qingdao University, Qingdao, Shandong 266003, China
| | - Shuo Li
- Department of General Surgery, Affiliated Hospital of Qingdao University, Qingdao, Shandong 266003, China
| | - Yu-Ting Guo
- State Key Laboratory of Virtual Reality Technology and Systems, Beihang University, Beijing 100191, China
| | - Yun-Peng Zhou
- Department of General Surgery, Affiliated Hospital of Qingdao University, Qingdao, Shandong 266003, China
| | - Zheng-Dong Zhang
- State Key Laboratory of Virtual Reality Technology and Systems, Beihang University, Beijing 100191, China
| | - Shuai Li
- State Key Laboratory of Virtual Reality Technology and Systems, Beihang University, Beijing 100191, China
| | - Yun Lu
- Department of General Surgery, Affiliated Hospital of Qingdao University, Qingdao, Shandong 266003, China
| |
Collapse
|
4
|
Chen H, Huang S, Zeng Q, Zhang M, Ni Z, Li X, Xu X. A retrospective study analyzing missed diagnosis of lung metastases at their early stages on computed tomography. J Thorac Dis 2019; 11:3360-3368. [PMID: 31559039 DOI: 10.21037/jtd.2019.08.19] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Abstract
Background Lungs are one of the target organs of metastases of primary lung, breast, liver, colorectal, and esophageal cancer. While computed tomography (CT) is the most widely used modality for detecting lung metastases, it is still very challenging to detect them at the earlier stages. If lung metastases could be found on CT scans at the earliest time points, patients would benefit by beginning treatment earlier. The objective of this study was to demonstrate that CT can reveal lung metastases in many cases at even earlier stages than current radiological practice may find. Methods One hundred patients with lung metastases were randomly selected and their surveillance CT scans were analyzed retrospectively. The patients had primary cancer in the breasts, lungs, esophagus, colorectum, and liver. All patients had multiple CT examinations of the lungs and their metastases, if any, were confirmed by subsequent CT scans. The earliest CT scans were examined to determine whether lung metastases at the same locations had been diagnosed or missed. Missed lung metastases, categorized by type of the primary cancer and adjacency to nearby blood vessels, were statistically analyzed. Results There were 36/100 (36%) cases of missed lung metastases, including 15 cases of single metastasis and 21 cases of multiple metastases. There were a total of 174 missed loci of lung metastases. Where metastases were missed, there was a statistically significant difference (P<0.001) in their distribution within the sub-regions of the lungs. Adjacency to blood vessels appeared to be a significant factor in metastases being missed during diagnosis (P<0.001). Conclusions There was a considerable percentage of early lung metastases that were missed by radiologists but actually appeared on CT scans. The capability of CT to reveal such early metastases opens up an opportunity to move up the time points of detecting lung metastases through clinical and training improvement and technology development such as computer-aided detection.
Collapse
Affiliation(s)
- Huai Chen
- Department of Radiology, First Affiliated Hospital of Guangzhou Medical University, Guangzhou 510120, China
| | - Suidan Huang
- Department of Radiology, First Affiliated Hospital of Guangzhou Medical University, Guangzhou 510120, China
| | - Qingsi Zeng
- Department of Radiology, First Affiliated Hospital of Guangzhou Medical University, Guangzhou 510120, China
| | - Min Zhang
- Department of Radiology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA
| | - Zhiwen Ni
- Department of Radiology, First Affiliated Hospital of Guangzhou Medical University, Guangzhou 510120, China
| | - Xiaoling Li
- Department of Radiology, First Affiliated Hospital of Guangzhou Medical University, Guangzhou 510120, China
| | - Xiaoyin Xu
- Department of Radiology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA
| |
Collapse
|
5
|
Artificial intelligence system of faster region-based convolutional neural network surpassing senior radiologists in evaluation of metastatic lymph nodes of rectal cancer. Chin Med J (Engl) 2019; 132:379-387. [PMID: 30707177 PMCID: PMC6595714 DOI: 10.1097/cm9.0000000000000095] [Citation(s) in RCA: 35] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022] Open
Abstract
BACKGROUND An artificial intelligence system of Faster Region-based Convolutional Neural Network (Faster R-CNN) is newly developed for the diagnosis of metastatic lymph node (LN) in rectal cancer patients. The primary objective of this study was to comprehensively verify its accuracy in clinical use. METHODS Four hundred fourteen patients with rectal cancer discharged between January 2013 and March 2015 were collected from 6 clinical centers, and the magnetic resonance imaging data for pelvic metastatic LNs of each patient was identified by Faster R-CNN. Faster R-CNN based diagnoses were compared with radiologist based diagnoses and pathologist based diagnoses for methodological verification, using correlation analyses and consistency check. For clinical verification, the patients were retrospectively followed up by telephone for 36 months, with post-operative recurrence of rectal cancer as a clinical outcome; recurrence-free survivals of the patients were compared among different diagnostic groups, by methods of Kaplan-Meier and Cox hazards regression model. RESULTS Significant correlations were observed between any 2 factors among the numbers of metastatic LNs separately diagnosed by radiologists, Faster R-CNN and pathologists, as evidenced by rradiologist-Faster R-CNN of 0.912, rPathologist-radiologist of 0.134, and rPathologist-Faster R-CNN of 0.448 respectively. The value of kappa coefficient in N staging between Faster R-CNN and pathologists was 0.573, and this value between radiologists and pathologists was 0.473. The 3 groups of Faster R-CNN, radiologists and pathologists showed no significant differences in the recurrence-free survival time for stage N0 and N1 patients, but significant differences were found for stage N2 patients. CONCLUSION Faster R-CNN surpasses radiologists in the evaluation of pelvic metastatic LNs of rectal cancer, but is not on par with pathologists. TRIAL REGISTRATION www.chictr.org.cn (No. ChiCTR-DDD-17013842).
Collapse
|
6
|
Dias RD, Gupta A, Yule SJ. Using Machine Learning to Assess Physician Competence: A Systematic Review. ACADEMIC MEDICINE : JOURNAL OF THE ASSOCIATION OF AMERICAN MEDICAL COLLEGES 2019; 94:427-439. [PMID: 30113364 DOI: 10.1097/acm.0000000000002414] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
PURPOSE To identify the different machine learning (ML) techniques that have been applied to automate physician competence assessment and evaluate how these techniques can be used to assess different competence domains in several medical specialties. METHOD In May 2017, MEDLINE, EMBASE, PsycINFO, Web of Science, ACM Digital Library, IEEE Xplore Digital Library, PROSPERO, and Cochrane Database of Systematic Reviews were searched for articles published from inception to April 30, 2017. Studies were included if they applied at least one ML technique to assess medical students', residents', fellows', or attending physicians' competence. Information on sample size, participants, study setting and design, medical specialty, ML techniques, competence domains, outcomes, and methodological quality was extracted. MERSQI was used to evaluate quality, and a qualitative narrative synthesis of the medical specialties, ML techniques, and competence domains was conducted. RESULTS Of 4,953 initial articles, 69 met inclusion criteria. General surgery (24; 34.8%) and radiology (15; 21.7%) were the most studied specialties; natural language processing (24; 34.8%), support vector machine (15; 21.7%), and hidden Markov models (14; 20.3%) were the ML techniques most often applied; and patient care (63; 91.3%) and medical knowledge (45; 65.2%) were the most assessed competence domains. CONCLUSIONS A growing number of studies have attempted to apply ML techniques to physician competence assessment. Although many studies have investigated the feasibility of certain techniques, more validation research is needed. The use of ML techniques may have the potential to integrate and analyze pragmatic information that could be used in real-time assessments and interventions.
Collapse
Affiliation(s)
- Roger D Dias
- R.D. Dias is instructor in emergency medicine, Department of Emergency Medicine and STRATUS Center for Medical Simulation, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts; ORCID: http://orcid.org/0000-0003-4959-5052. A. Gupta is research scientist, Center for Surgery and Public Health, Brigham and Women's Hospital, Boston, Massachusetts. S.J. Yule is associate professor of surgery, Harvard Medical School, and faculty, Department of Surgery and STRATUS Center for Medical Simulation, Brigham and Women's Hospital, Boston, Massachusetts
| | | | | |
Collapse
|
7
|
Automatic thyroid nodule recognition and diagnosis in ultrasound imaging with the YOLOv2 neural network. World J Surg Oncol 2019; 17:12. [PMID: 30621704 PMCID: PMC6325802 DOI: 10.1186/s12957-019-1558-z] [Citation(s) in RCA: 82] [Impact Index Per Article: 16.4] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2018] [Accepted: 01/02/2019] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND In this study, images of 2450 benign thyroid nodules and 2557 malignant thyroid nodules were collected and labeled, and an automatic image recognition and diagnosis system was established by deep learning using the YOLOv2 neural network. The performance of the system in the diagnosis of thyroid nodules was evaluated, and the application value of artificial intelligence in clinical practice was investigated. METHODS The ultrasound images of 276 patients were retrospectively selected. The diagnoses of the radiologists were determined according to the Thyroid Imaging Reporting and Data System; the images were automatically recognized and diagnosed by the established artificial intelligence system. Pathological diagnosis was the gold standard for the final diagnosis. The performances of the established system and the radiologists in diagnosing the benign and malignant thyroid nodules were compared. RESULTS The artificial intelligence diagnosis system correctly identified the lesion area, with an area under the receiver operating characteristic (ROC) curve of 0.902, which is higher than that of the radiologists (0.859). This finding indicates a higher diagnostic accuracy (p = 0.0434). The sensitivity, positive predictive value, negative predictive value, and accuracy of the artificial intelligence diagnosis system for the diagnosis of malignant thyroid nodules were 90.5%, 95.22%, 80.99%, and 90.31%, respectively, and the performance did not significantly differ from that of the radiologists (p > 0.05). The artificial intelligence diagnosis system had a higher specificity (89.91% vs 77.98%, p = 0.026). CONCLUSIONS Compared with the performance of experienced radiologists, the artificial intelligence system has comparable sensitivity and accuracy for the diagnosis of malignant thyroid nodules and better diagnostic ability for benign thyroid nodules. As an auxiliary tool, this artificial intelligence diagnosis system can provide radiologists with sufficient assistance in the diagnosis of benign and malignant thyroid nodules.
Collapse
|
8
|
Review: On Segmentation of Nodules from Posterior and Anterior Chest Radiographs. Int J Biomed Imaging 2018; 2018:9752638. [PMID: 30498510 PMCID: PMC6220737 DOI: 10.1155/2018/9752638] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2018] [Revised: 09/11/2018] [Accepted: 09/17/2018] [Indexed: 12/05/2022] Open
Abstract
Lung cancer is one of the major types of cancer in the world. Survival rate can be increased if the disease can be identified early. Posterior and anterior chest radiography and computerized tomography scans are the most used diagnosis techniques for detecting tumor from lungs. Posterior and anterior chest radiography requires less radiation dose and is available in most of the diagnostic centers and it costs less compared to the remaining diagnosis techniques. So PA chest radiography became the most commonly used technique for lung cancer detection. Because of superimposed anatomical structures present in the image, sometimes radiologists cannot find abnormalities from the image. To help radiologists in diagnosing tumor from PA chest radiographic images range of CAD scheme has been developed for the past three decades. These computerized tools may be used by radiologists as a second opinion in detecting tumor. Literature survey on detecting tumors from chest graphs is presented in this paper.
Collapse
|
9
|
Wang X, Leader JK, Wang R, Wilson D, Herman J, Yuan JM, Pu J. Vasculature surrounding a nodule: A novel lung cancer biomarker. Lung Cancer 2017; 114:38-43. [PMID: 29173763 PMCID: PMC5880279 DOI: 10.1016/j.lungcan.2017.10.008] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2017] [Revised: 10/16/2017] [Accepted: 10/22/2017] [Indexed: 12/19/2022]
Abstract
PURPOSE To investigate whether the vessels surrounding a nodule depicted on non-contrast, low-dose computed tomography (LDCT) can discriminate benign and malignant screen detected nodules. MATERIALS AND METHODS We collected a dataset consisting of LDCT scans acquired on 100 subjects from the Pittsburgh Lung Screening study (PLuSS). Fifty subjects were diagnosed with lung cancer and 50 subjects had suspicious nodules later proven benign. For the lung cancer cases, the location of the malignant nodule in the LDCT scans was known; while for the benign cases, the largest nodule in the LDCT scan was used in the analysis. A computer algorithm was developed to identify surrounding vessels and quantify the number and volume of vessels that were connected or near the nodule. A nonparametric receiver operating characteristic (ROC) analysis was performed based on a single nodule per subject to assess the discriminability of the surrounding vessels to provide a lung cancer diagnosis. Odds ratio (OR) were computed to determine the probability of a nodule being lung cancer based on the vessel features. RESULTS The areas under the ROC curves (AUCs) for vessel count and vessel volume were 0.722 (95% CI=0.616-0.811, p<0.01) and 0.676 (95% CI=0.565-0.772), respectively. The number of vessels attached to a nodule was significantly higher in the lung cancer group 9.7 (±9.6) compared to the non-lung cancer group 4.0 (±4.3) CONCLUSION: Our preliminary results showed that malignant nodules are often surrounded by more vessels compared to benign nodules, suggesting that the surrounding vessel characteristics could serve as lung cancer biomarker for indeterminate nodules detected during LDCT lung cancer screening using only the information collected during the initial visit.
Collapse
Affiliation(s)
- Xiaohua Wang
- Department of Radiology, Peking University Third Hospital, Beijing, China
| | - Joseph K Leader
- Department of Radiology, Peking University Third Hospital, Beijing, China
| | - Renwei Wang
- University of Pittsburgh Cancer Institute, Pittsburgh, PA, USA
| | - David Wilson
- University of Pittsburgh Cancer Institute, Pittsburgh, PA, USA; Department of Medicine, University of Pittsburgh, Pittsburgh, PA, USA
| | - James Herman
- University of Pittsburgh Cancer Institute, Pittsburgh, PA, USA; Division of Hematology/Oncology, University of Pittsburgh, Pittsburgh, PA, USA
| | - Jian-Min Yuan
- University of Pittsburgh Cancer Institute, Pittsburgh, PA, USA; Department of Epidemiology, University of Pittsburgh, Pittsburgh, PA, USA
| | - Jiantao Pu
- Department of Radiology, Peking University Third Hospital, Beijing, China; Department of Bioengineering, University of Pittsburgh, Pittsburgh, USA.
| |
Collapse
|
10
|
Multicenter external validation of two malignancy risk prediction models in patients undergoing 18F-FDG-PET for solitary pulmonary nodule evaluation. Eur Radiol 2016; 27:2042-2046. [DOI: 10.1007/s00330-016-4580-3] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2015] [Revised: 06/27/2016] [Accepted: 08/26/2016] [Indexed: 12/17/2022]
|
11
|
Zaglam N, Cheriet F, Jouvet P. Computer-Aided Diagnosis for Chest Radiographs in Intensive Care. J Pediatr Intensive Care 2016; 5:113-121. [PMID: 31110895 DOI: 10.1055/s-0035-1569995] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2015] [Accepted: 10/02/2015] [Indexed: 10/22/2022] Open
Abstract
The chest radiograph is an essential tool for the diagnosis of several lung diseases in intensive care units (ICU). However, several factors make the interpretation of the chest radiograph difficult including the number of X-rays done daily in ICU, the quality of the chest radiograph, and the lack of a standardized interpretation. To overcome these limitations in the interpretation of chest radiographs, researchers have developed computer-aided diagnosis (CAD) systems. In this review, the authors report the methodology used to develop CAD systems including identification of the region of interest, analysis of these regions, and classification. Currently, only a few CAD systems for chest X-ray interpretation are commercially available. Some promising research is ongoing, but the involvement of the pediatric research community is needed for the development and validation of such CAD systems dedicated to pediatric intensive care.
Collapse
Affiliation(s)
- Nesrine Zaglam
- Department of Computer Engineering, École Polytechnique, Montréal, Quebec, Canada.,Research Center, Sainte Justine University Hospital, Montreal, Quebec, Canada
| | - Farida Cheriet
- Department of Computer Engineering, École Polytechnique, Montréal, Quebec, Canada.,Research Center, Sainte Justine University Hospital, Montreal, Quebec, Canada
| | - Philippe Jouvet
- Research Center, Sainte Justine University Hospital, Montreal, Quebec, Canada.,Pediatric Intensive Care Unit, Sainte Justine University Hospital, Montreal, Quebec, Canada
| |
Collapse
|
12
|
Niehaus R, Raicu DS, Furst J, Armato S. Toward Understanding the Size Dependence of Shape Features for Predicting Spiculation in Lung Nodules for Computer-Aided Diagnosis. J Digit Imaging 2016; 28:704-17. [PMID: 25708891 DOI: 10.1007/s10278-015-9774-8] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022] Open
Abstract
We analyze the importance of shape features for predicting spiculation ratings assigned by radiologists to lung nodules in computed tomography (CT) scans. Using the Lung Image Database Consortium (LIDC) data and classification models based on decision trees, we demonstrate that the importance of several shape features increases disproportionately relative to other image features with increasing size of the nodule. Our shaped-based classification results show an area under the receiver operating characteristic (ROC) curve of 0.65 when classifying spiculation for small nodules and an area of 0.91 for large nodules, resulting in a 26% difference in classification performance using shape features. An analysis of the results illustrates that this change in performance is driven by features that measure boundary complexity, which perform well for large nodules but perform relatively poorly and do no better than other features for small nodules. For large nodules, the roughness of the segmented boundary maps well to the semantic concept of spiculation. For small nodules, measuring directly the complexity of hard segmentations does not yield good results for predicting spiculation due to limits imposed by spatial resolution and the uncertainty in boundary location. Therefore, a wider range of features, including shape, texture, and intensity features, are needed to predict spiculation ratings for small nodules. A further implication is that the efficacy of shape features for a particular classifier used to create computer-aided diagnosis systems depends on the distribution of nodule sizes in the training and testing sets, which may not be consistent across different research studies.
Collapse
Affiliation(s)
- Ron Niehaus
- School of Computing, DePaul University, 243 S. Wabash Avenue, Chicago, IL, 60604, USA.
| | - Daniela Stan Raicu
- School of Computing, DePaul University, 243 S. Wabash Avenue, Chicago, IL, 60604, USA
| | - Jacob Furst
- School of Computing, DePaul University, 243 S. Wabash Avenue, Chicago, IL, 60604, USA
| | - Samuel Armato
- Department of Radiology, University of Chicago, Chicago, IL, USA
| |
Collapse
|
13
|
Thomas MA, Wyckoff N, Yue K, Binesh N, Banakar S, Chung HK, Sayre J, DeBruhl N. Two-dimensional MR Spectroscopic Characterization of Breast Cancer In Vivo. Technol Cancer Res Treat 2016; 4:99-106. [PMID: 15649093 DOI: 10.1177/153303460500400113] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
The major goal of this work was to characterize invasive ductal carcinoma and healthy fatty breast tissues noninvasively using the classification and regression tree analysis (CART) of 2D MR spectral data. 2D L-COSY spectra were acquired in 14 invasive breast carcinoma and 21 healthy fatty breasts using a GE 1.5 Tesla MRI/MRS scanner equipped with a 2-channel phased-array breast MR coil. The 2D spectra were recorded in approximately 10 minutes using a minimum voxel size of 1 ml without any water suppression technique. For healthy breasts, spectra were acquired from at least one fatty region. 2D L-COSY spectra were recorded in a total of 43 voxels. Five diagonal and six cross peak volumes were integrated and at least eighteen ratios were selected as potential features for the statistical method, namely CART. The 2D L-COSY data showed a significant increase for the majority of these ratios in invasive breast carcinomas compared to healthy fatty tissues. Better accuracy of identifying carcinomas and fatty tissues is reported using CART analysis of different combinations of ratios calculated from the relative levels of water, choline, and saturated and unsaturated lipids. This is a first report on the statistical classification of 2D L-COSY in human breast carcinomas in vivo.
Collapse
Affiliation(s)
- M Albert Thomas
- Radiological Sciences, UCLA School of Medicine, 10833 Le Conte Avenue, Los Angeles, CA 90095-1721, USA.
| | | | | | | | | | | | | | | |
Collapse
|
14
|
Peña DM, Luo S, Abdelgader AMS. Auto Diagnostics of Lung Nodules Using Minimal Characteristics Extraction Technique. Diagnostics (Basel) 2016; 6:E13. [PMID: 26959065 PMCID: PMC4808828 DOI: 10.3390/diagnostics6010013] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2016] [Revised: 02/19/2016] [Accepted: 02/24/2016] [Indexed: 11/16/2022] Open
Abstract
Computer-aided detection (CAD) systems provide useful tools and an advantageous process to physicians aiming to detect lung nodules. This paper develops a method composed of four processes for lung nodule detection. The first step employs image acquisition and pre-processing techniques to isolate the lungs from the rest of the body. The second stage involves the segmentation process using a 2D algorithm to affect every layer of a scan eliminating non-informative structures inside the lungs, and a 3D blob algorithm associated with a connectivity algorithm to select possible nodule shape candidates. The combinations of these algorithms efficiently eliminate the high rates of false positives. The third process extracts eight minimal representative characteristics of the possible candidates. The final step utilizes a support vector machine for classifying the possible candidates into nodules and non-nodules depending on their features. As the objective is to find nodules bigger than 4mm, the proposed approach demonstrated quite encouraging results. Among 65 computer tomography (CT) scans, 94.23% of sensitivity and 84.75% in specificity were obtained. The accuracy of these two results was 89.19% taking into consideration that 45 scans were used for testing and 20 for training. The rate of false positives was 0.2 per scan.
Collapse
Affiliation(s)
- Diego M Peña
- Department of Digital Image Processing, Faculty of Biomedical Engineering, Southeast University, Nanjing 210096, China.
| | - Shouhua Luo
- Department of Digital Image Processing, Faculty of Biomedical Engineering, Southeast University, Nanjing 210096, China.
| | - Abdeldime M S Abdelgader
- Department of Digital Image Processing, Faculty of Biomedical Engineering, Southeast University, Nanjing 210096, China.
- Department of Electrical and Computer Engineering, Karary University, Khartoum 12304, Sudan.
| |
Collapse
|
15
|
Li G, Kim H, Tan JK, Ishikawa S, Hirano Y, Kido S, Tachibana R. Semantic characteristics prediction of pulmonary nodule using Artificial Neural Networks. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2015; 2013:5465-8. [PMID: 24110973 DOI: 10.1109/embc.2013.6610786] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
Since it is difficult to choose which computer calculated features are effective to predict the malignancy of pulmonary nodules, in this study, we add a semantic-level of Artificial Neural Networks (ANNs) structure to improve intuition of features selection. The works of this study include two: 1) seeking the relationships between computer-calculated features and medical semantic concepts which could be understood by human; 2) providing an objective assessment method to predict the malignancy from semantic characteristics. We used 60 thoracic CT scans collected from the Lung Image Database Consortium (LIDC) database, in which the suspicious lesions had been delineated and annotated by 4 radiologists independently. Corresponding to the two works of this study, correlation analysis experiment and agreement experiment were performed separately.
Collapse
|
16
|
Zamacona JR, Niehaus R, Rasin A, Furst JD, Raicu DS. Assessing diagnostic complexity: An image feature-based strategy to reduce annotation costs. Comput Biol Med 2015; 62:294-305. [DOI: 10.1016/j.compbiomed.2015.01.013] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2014] [Revised: 01/05/2015] [Accepted: 01/14/2015] [Indexed: 11/26/2022]
|
17
|
Kao EF, Liu GC, Lee LY, Tsai HY, Jaw TS. Computer-aided detection system for chest radiography: reducing report turnaround times of examinations with abnormalities. Acta Radiol 2015; 56:696-701. [PMID: 24948788 DOI: 10.1177/0284185114538017] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2014] [Accepted: 05/12/2014] [Indexed: 12/25/2022]
Abstract
BACKGROUND The ability to give high priority to examinations with pathological findings could be very useful to radiologists with large work lists who wish to first evaluate the most critical studies. A computer-aided detection (CAD) system for identifying chest examinations with abnormalities has therefore been developed. PURPOSE To evaluate the effectiveness of a CAD system on report turnaround times of chest examinations with abnormalities. MATERIAL AND METHODS The CAD system was designed to automatically mark chest examinations with possible abnormalities in the work list of radiologists interpreting chest examinations. The system evaluation was performed in two phases: two radiologists interpreted the chest examinations without CAD in phase 1 and with CAD in phase 2. The time information recorded by the radiology information system was then used to calculate the turnaround times. All chest examinations were reviewed by two other radiologists and were divided into normal and abnormal groups. The turnaround times for the examinations with pathological findings with and without the CAD system assistance were compared. RESULTS The sensitivity and specificity of the CAD for chest abnormalities were 0.790 and 0.697, respectively, and use of the CAD system decreased the turnaround time for chest examinations with abnormalities by 44%. CONCLUSION The turnaround times required for radiologists to identify chest examinations with abnormalities could be reduced by using the CAD system. This system could be useful for radiologists with large work lists who wish to first evaluate the most critical studies.
Collapse
Affiliation(s)
- E-Fong Kao
- Department of Medical Imaging and Radiological Sciences, Kaohsiung Medical University, Kaohsiung, Taiwan
| | - Gin-Chung Liu
- Department of Medical Imaging, Kaohsiung Medical University Chung-Ho Memorial Hospital, Kaohsiung, Taiwan
| | - Lo-Yeh Lee
- Department of Medical Imaging, Kaohsiung Medical University Chung-Ho Memorial Hospital, Kaohsiung, Taiwan
| | - Huei-Yi Tsai
- Department of Radiology, St. Joseph Hospital, Kaohsiung, Taiwan
| | - Twei-Shiun Jaw
- Department of Medical Imaging, Kaohsiung Medical University Chung-Ho Memorial Hospital, Kaohsiung, Taiwan
| |
Collapse
|
18
|
Wang JJ, Wu HF, Sun T, Li X, Wang W, Tao LX, Huo D, Lv PX, He W, Guo XH. Prediction models for solitary pulmonary nodules based on curvelet textural features and clinical parameters. Asian Pac J Cancer Prev 2014; 14:6019-23. [PMID: 24289618 DOI: 10.7314/apjcp.2013.14.10.6019] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
Abstract
Lung cancer, one of the leading causes of cancer-related deaths, usually appears as solitary pulmonary nodules (SPNs) which are hard to diagnose using the naked eye. In this paper, curvelet-based textural features and clinical parameters are used with three prediction models [a multilevel model, a least absolute shrinkage and selection operator (LASSO) regression method, and a support vector machine (SVM)] to improve the diagnosis of benign and malignant SPNs. Dimensionality reduction of the original curvelet-based textural features was achieved using principal component analysis. In addition, non-conditional logistical regression was used to find clinical predictors among demographic parameters and morphological features. The results showed that, combined with 11 clinical predictors, the accuracy rates using 12 principal components were higher than those using the original curvelet-based textural features. To evaluate the models, 10-fold cross validation and back substitution were applied. The results obtained, respectively, were 0.8549 and 0.9221 for the LASSO method, 0.9443 and 0.9831 for SVM, and 0.8722 and 0.9722 for the multilevel model. All in all, it was found that using curvelet-based textural features after dimensionality reduction and using clinical predictors, the highest accuracy rate was achieved with SVM. The method may be used as an auxiliary tool to differentiate between benign and malignant SPNs in CT images.
Collapse
Affiliation(s)
- Jing-Jing Wang
- Department of Epidemiology and Health Statistics, School of Public Health, Capital Medical University, Beijing, China E-mail :
| | | | | | | | | | | | | | | | | | | |
Collapse
|
19
|
van Rikxoort EM, van Ginneken B. Automated segmentation of pulmonary structures in thoracic computed tomography scans: a review. Phys Med Biol 2014; 58:R187-220. [PMID: 23956328 DOI: 10.1088/0031-9155/58/17/r187] [Citation(s) in RCA: 68] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
Computed tomography (CT) is the modality of choice for imaging the lungs in vivo. Sub-millimeter isotropic images of the lungs can be obtained within seconds, allowing the detection of small lesions and detailed analysis of disease processes. The high resolution of thoracic CT and the high prevalence of lung diseases require a high degree of automation in the analysis pipeline. The automated segmentation of pulmonary structures in thoracic CT has been an important research topic for over a decade now. This systematic review provides an overview of current literature. We discuss segmentation methods for the lungs, the pulmonary vasculature, the airways, including airway tree construction and airway wall segmentation, the fissures, the lobes and the pulmonary segments. For each topic, the current state of the art is summarized, and topics for future research are identified.
Collapse
Affiliation(s)
- Eva M van Rikxoort
- Diagnostic Image Analysis Group, Department of Radiology, Radboud University Nijmegen Medical Centre, The Netherlands.
| | | |
Collapse
|
20
|
Wu H, Sun T, Wang J, Li X, Wang W, Huo D, Lv P, He W, Wang K, Guo X. Combination of radiological and gray level co-occurrence matrix textural features used to distinguish solitary pulmonary nodules by computed tomography. J Digit Imaging 2014; 26:797-802. [PMID: 23325122 DOI: 10.1007/s10278-012-9547-6] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022] Open
Abstract
The objective of this study was to investigate the method of the combination of radiological and textural features for the differentiation of malignant from benign solitary pulmonary nodules by computed tomography. Features including 13 gray level co-occurrence matrix textural features and 12 radiological features were extracted from 2,117 CT slices, which came from 202 (116 malignant and 86 benign) patients. Lasso-type regularization to a nonlinear regression model was applied to select predictive features and a BP artificial neural network was used to build the diagnostic model. Eight radiological and two textural features were obtained after the Lasso-type regularization procedure. Twelve radiological features alone could reach an area under the ROC curve (AUC) of 0.84 in differentiating between malignant and benign lesions. The 10 selected characters improved the AUC to 0.91. The evaluation results showed that the method of selecting radiological and textural features appears to yield more effective in the distinction of malignant from benign solitary pulmonary nodules by computed tomography.
Collapse
Affiliation(s)
- Haifeng Wu
- School of Public Health and Family Medicine, Capital Medical University, Beijing 100069, China
| | | | | | | | | | | | | | | | | | | |
Collapse
|
21
|
Combining Ensemble of Classifiers Using Voting-Based Rule to Predict Radiological Ratings for Lung Nodule Malignancy. ACTA ACUST UNITED AC 2013. [DOI: 10.1007/978-81-322-1157-0_45] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/20/2023]
|
22
|
Abstract
The solitary pulmonary nodule (SPN) is a common medical problem for which management can be quite complex. Imaging remains at the center of management of SPNs, and computed tomography is the primary modality by which SPNs are characterized and followed up for stability. This manuscript summarizes the American College of Radiology Appropriateness Criteria for radiographically detected solitary pulmonary nodules and briefly reviews the various imaging techniques available. The American College of Radiology Appropriateness Criteria are evidence-based guidelines for specific clinical conditions that are reviewed every 2 years by a multidisciplinary expert panel. The guideline development and review include an extensive analysis of current medical literature from peer reviewed journals and the application of a well-established consensus methodology (modified Delphi) to rate the appropriateness of imaging and treatment procedures by the panel. In those instances in which evidence is lacking or not definitive, expert opinion may be used to recommend imaging or treatment.
Collapse
|
23
|
Computer-aided diagnosis systems for lung cancer: challenges and methodologies. Int J Biomed Imaging 2013; 2013:942353. [PMID: 23431282 PMCID: PMC3570946 DOI: 10.1155/2013/942353] [Citation(s) in RCA: 116] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2012] [Accepted: 11/20/2012] [Indexed: 11/24/2022] Open
Abstract
This paper overviews one of the most important, interesting, and challenging problems in oncology, the problem of lung cancer diagnosis. Developing an effective computer-aided diagnosis (CAD) system for lung cancer is of great clinical importance and can increase the patient's chance of survival. For this reason, CAD systems for lung cancer have been investigated in a huge number of research studies. A typical CAD system for lung cancer diagnosis is composed of four main processing steps: segmentation of the lung fields, detection of nodules inside the lung fields, segmentation of the detected nodules, and diagnosis of the nodules as benign or malignant. This paper overviews the current state-of-the-art techniques that have been developed to implement each of these CAD processing steps. For each technique, various aspects of technical issues, implemented methodologies, training and testing databases, and validation methods, as well as achieved performances, are described. In addition, the paper addresses several challenges that researchers face in each implementation step and outlines the strengths and drawbacks of the existing approaches for lung cancer CAD systems.
Collapse
|
24
|
Zhu Y, Tan Y, Hua Y, Zhang G, Zhang J. Automatic segmentation of ground-glass opacities in lung CT images by using Markov random field-based algorithms. J Digit Imaging 2012; 25:409-22. [PMID: 22089834 DOI: 10.1007/s10278-011-9435-5] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022] Open
Abstract
Chest radiologists rely on the segmentation and quantificational analysis of ground-glass opacities (GGO) to perform imaging diagnoses that evaluate the disease severity or recovery stages of diffuse parenchymal lung diseases. However, it is computationally difficult to segment and analyze patterns of GGO while compared with other lung diseases, since GGO usually do not have clear boundaries. In this paper, we present a new approach which automatically segments GGO in lung computed tomography (CT) images using algorithms derived from Markov random field theory. Further, we systematically evaluate the performance of the algorithms in segmenting GGO in lung CT images under different situations. CT image studies from 41 patients with diffuse lung diseases were enrolled in this research. The local distributions were modeled with both simple and adaptive (AMAP) models of maximum a posteriori (MAP). For best segmentation, we used the simulated annealing algorithm with a Gibbs sampler to solve the combinatorial optimization problem of MAP estimators, and we applied a knowledge-guided strategy to reduce false positive regions. We achieved AMAP-based GGO segmentation results of 86.94%, 94.33%, and 94.06% in average sensitivity, specificity, and accuracy, respectively, and we evaluated the performance using radiologists' subjective evaluation and quantificational analysis and diagnosis. We also compared the results of AMAP-based GGO segmentation with those of support vector machine-based methods, and we discuss the reliability and other issues of AMAP-based GGO segmentation. Our research results demonstrate the acceptability and usefulness of AMAP-based GGO segmentation for assisting radiologists in detecting GGO in high-resolution CT diagnostic procedures.
Collapse
Affiliation(s)
- Yanjie Zhu
- Shanghai Institute of Technical Physics, Chinese Academy of Sciences, 500 Yu Tian Road, Shanghai, China
| | | | | | | | | |
Collapse
|
25
|
Li Y, Wang J. A mathematical model for predicting malignancy of solitary pulmonary nodules. World J Surg 2012; 36:830-5. [PMID: 22297626 DOI: 10.1007/s00268-012-1449-8] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
BACKGROUND The goal of the present study was to differentiate between benign and malignant solitary pulmonary nodules (SPN) by developing a mathematical prediction model. METHODS Records from 371 patients (197 male, 174 female) with SPN between January 2000 and September 2009 were reviewed (group A). Clinical data were collected to estimate the independent predictors of malignancy of SPN with multivariate logistic regression analysis. A clinical prediction model was subsequently developed. Between October 2009 and May 2011, data from an additional 145 patients with SPN were used to validate this new clinical prediction model (group B). The same data were also estimated with two previously published models for comparison with our new model. RESULTS The median patient age was 57.1 years in group A; 54% of the nodules were malignant and 46% were benign. Logistic regression analysis identified six clinical characteristics (age, diameter, border, calcification, spiculation, and family history of tumor) as independent predictors of malignancy in patients with SPN. The area under the receiver operator characteristic (ROC) curve for our model (0.874 ± 0.028) was higher than those generated using the other two reported models. In our model, sensitivity = 94.5%, specificity = 70.0%, positive predictive value = 87.8%, and negative predictive value = 84.8%). CONCLUSIONS Age, diameter, border, calcification, spiculation, and family history of tumor were independent predictors of malignancy in patients with SPN. Our prediction model was sufficient to estimate malignancy in patients with SPN and proved to be more accurate than the two existing models.
Collapse
Affiliation(s)
- Yun Li
- Department of Thoracic Surgery, People’s Hospital of Peking University, No. 11 Xizhimen South Street, Xicheng District, 100044 Beijing, People’s Republic of China.
| | | |
Collapse
|
26
|
Tang AC, Chung JW, Wong TK. Digitalizing Traditional Chinese Medicine Pulse Diagnosis with Artificial Neural Network. Telemed J E Health 2012; 18:446-53. [DOI: 10.1089/tmj.2011.0204] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Affiliation(s)
| | - Joanne W.Y. Chung
- Department of Health and Physical Education, The Hong Kong Institute of Education, Hong Kong
| | - Thomas K.S. Wong
- School of Nursing, The Hong Kong Polytechnic University, Hong Kong
| |
Collapse
|
27
|
Geraets WGM, Lindh C, Verheij H. Sparseness of the trabecular pattern on dental radiographs: visual assessment compared with semi-automated measurements. Br J Radiol 2012; 85:e455-60. [PMID: 22374281 DOI: 10.1259/bjr/32962542] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022] Open
Abstract
OBJECTIVE In diagnostic imaging; human perception is the most prominent, yet least studied, source of error. A better understanding of image perception will help to improve diagnostic performance. This study focuses on the perception of coarseness of trabecular patterns on dental radiographs. Comparison of human vision with machine vision should yield knowledge on human perception. METHOD In a study on identifying osteoporotic patients, dental radiographs were made from 505 post-menopausal women aged 45-70 years. Intra-oral radiographs of the lower and upper jaws were made. Five observers graded the trabecular pattern as dense, sparse or mixed. The five gradings were combined into a single averaged observer score per jaw. The radiographs were scanned and a region of interest (ROI) was indicated on each. The ROIs were processed with image analysis software measuring 25 image features. Pearson correlation and multiple linear regression were used to compare the averaged observer score with the image features. RESULTS 14 image features correlated significantly with the observer judgement for both jaws. The strongest correlation was found for the average grey value in the ROI. Other features, describing that osteoporotic patients have fewer but bigger marrow spaces than controls, correlated less with the sparseness of the trabecular pattern than a rather crude measure for structure such as the average grey value. CONCLUSION Human perception of the sparseness of trabecular patterns is based more on average grey values of the ROI than on geometric details within the ROI.
Collapse
Affiliation(s)
- W G M Geraets
- Department of Oral and Maxillofacial Radiology, Academic Centre for Dentistry Amsterdam (ACTA), Amsterdam, Netherlands.
| | | | | |
Collapse
|
28
|
Abstract
OBJECTIVE Pulmonary carcinoid tumors are low-grade malignant neoplasms thought to arise primarily within the central airways in 85% of cases. The CT features of pulmonary carcinoid tumors that arise as solitary pulmonary nodules (SPNs) have not been well elucidated. We reviewed our experience with primary pulmonary carcinoid tumors to determine the distribution of lesions within the lung at diagnosis and to identify CT features that might aid in distinguishing these neoplasms from benign pulmonary nodules. MATERIALS AND METHODS CT scans, if available, of all patients with a primary pulmonary carcinoid tumor diagnosed by biopsy or surgical resection over the previous 15 years were reviewed. The CT scans were reviewed for the following features: lesion location; order of bronchus involved; lesion size, contour, and density; contrast enhancement; and the presence of peripheral atelectasis, hyperlucency, and bronchiectasis. We defined central lesions as those involved with a segmental or larger bronchus. Subsegmental bronchial involvement and tumors surrounded by lung parenchyma without direct airway involvement were defined as peripheral lesions. The final pathologic diagnosis for all cases was confirmed by review of cytologic or histologic specimens. RESULTS Twenty-eight carcinoid tumors were identified in 28 patients: 24 typical carcinoids and four atypical carcinoids. The study group was composed of 23 females and five males with a mean age of 52.4 years (range, 14-83 years). Twelve of the 28 lesions (43%) were central (i.e., involved a segmental or larger bronchus), and the remaining 16 lesions (57%) were peripheral. The mean tumor diameter for the 16 peripheral tumors was 14 mm (range, 9-28 mm); the majority (14/16, 88%) had a lobulated contour. Of six peripheral lesions with unenhanced and contrast-enhanced CT nodule enhancement studies, the mean maximal enhancement was 55.2 HU (range, 34-73 HU). Thirteen of the 16 peripheral carcinoid tumors (81%) involved a subsegmental bronchus, with 10 (63%) showing peripheral hyperlucency, bronchiectasis, or atelectasis. CONCLUSION In our series, primary pulmonary carcinoid tumors presenting as peripheral SPNs were more common than central endobronchial lesions in contrast to the published literature. The CT features of peripheral carcinoid tumors presenting as SPNs that suggest the diagnosis include lobulated nodules of high attenuation on contrast-enhanced CT; nodules that densely enhance with contrast administration; the presence of calcification; subsegmental airway involvement on thin-section analysis; and nodules associated with distal hyperlucency, bronchiectasis, or atelectasis.
Collapse
|
29
|
Okumura E, Kawashita I, Ishida T. Computerized analysis of pneumoconiosis in digital chest radiography: effect of artificial neural network trained with power spectra. J Digit Imaging 2011; 24:1126-32. [PMID: 21153856 PMCID: PMC3222544 DOI: 10.1007/s10278-010-9357-7] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022] Open
Abstract
It is difficult for radiologists to classify pneumoconiosis with small nodules on chest radiographs. Therefore, we have developed a computer-aided diagnosis (CAD) system based on the rule-based plus artificial neural network (ANN) method for distinction between normal and abnormal regions of interest (ROIs) selected from chest radiographs with and without pneumoconiosis. The image database consists of 11 normal and 12 abnormal chest radiographs. These abnormal cases included five silicoses, four asbestoses, and three other pneumoconioses. ROIs (matrix size, 32 × 32) were selected from normal and abnormal lungs. We obtained power spectra (PS) by Fourier transform for the frequency analysis. A rule-based method using PS values at 0.179 and 0.357 cycles per millimeter, corresponding to the spatial frequencies of nodular patterns, were employed for identification of obviously normal or obviously abnormal ROIs. Then, ANN was applied for classification of the remaining normal and abnormal ROIs, which were not classified as obviously abnormal or normal by the rule-based method. The classification performance was evaluated by the area under the receiver operating characteristic curve (Az value). The Az value was 0.972 ± 0.012 for the rule-based plus ANN method, which was larger than that of 0.961 ± 0.016 for the ANN method alone (P ≤ 0.15) and that of 0.873 for the rule-based method alone. We have developed a rule-based plus pattern recognition technique based on the ANN for classification of pneumoconiosis on chest radiography. Our CAD system based on PS would be useful to assist radiologists in the classification of pneumoconiosis.
Collapse
Affiliation(s)
- Eiichiro Okumura
- Department of Medical Radiological Technology, Kagoshima Medical Technology College, 5417-1 Hirakawa, Kagoshima, 891-0133, Japan.
| | | | | |
Collapse
|
30
|
Shiraishi J, Li Q, Appelbaum D, Doi K. Computer-Aided Diagnosis and Artificial Intelligence in Clinical Imaging. Semin Nucl Med 2011; 41:449-62. [DOI: 10.1053/j.semnuclmed.2011.06.004] [Citation(s) in RCA: 120] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
|
31
|
Li Y, Chen KZ, Wang J. Development and Validation of a Clinical Prediction Model to Estimate the Probability of Malignancy in Solitary Pulmonary Nodules in Chinese People. Clin Lung Cancer 2011; 12:313-9. [DOI: 10.1016/j.cllc.2011.06.005] [Citation(s) in RCA: 51] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2010] [Revised: 02/21/2011] [Accepted: 02/28/2011] [Indexed: 12/21/2022]
|
32
|
|
33
|
Preis O, Blake MA, Scott JA. Neural network evaluation of PET scans of the liver: a potentially useful adjunct in clinical interpretation. Radiology 2011; 258:714-21. [PMID: 21339347 DOI: 10.1148/radiol.10100547] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
PURPOSE To assess the performance of an artificial neural network in the evaluation of fluorine 18 fluorodeoxyglucose (FDG) uptake in the liver, compared with the results of expert interpretation of abdominal liver magnetic resonance (MR) images. MATERIALS AND METHODS The study was approved by the institutional human research committee and was HIPAA compliant, with waiver of informed consent. Digital data from positron emission tomographic (PET)/computed tomographic (CT) examinations, along with patient demographics, were obtained from 98 consecutive patients who underwent both whole-body PET/CT examinations and liver MR imaging examinations within 2 months. Interpretations of the scans from PET/CT examinations by trained neural networks were cross-classified with expert interpretations of the findings on images from MR examinations for intrahepatic benignity or malignancy. Receiver operating characteristic (ROC) curves were obtained for the designed networks. The significance of the difference between neural network ROC curves and the ROC curves detailing the performance of two expert blinded observers in the interpretation of liver FDG uptake was determined. RESULTS A neural network incorporating lesion data demonstrated an ROC curve with an area under the curve (AUC) of 0.905 (standard error, 0.0370). A network independent of lesion data demonstrated an ROC curve with an AUC of 0.896 (standard error, 0.0386). These results compare favorably with results of expert blinded observers 1 and 2 who demonstrated ROCs with AUCs of 0.786 (standard error, 0.0522) and 0.796 (standard error, 0.0514), respectively. Following unblinding to network data, the AUCs for readers 1 and 2 improved to 0.924 (standard error, 0.0335) and 0.881 (standard error, 0.0409), respectively. CONCLUSION Computers running artificial neural networks employing PET/CT scan data are sensitive and specific in the designation of the presence of intrahepatic malignancy, with comparison with interpretation by expert observers. When used in conjunction with human expertise, network data improve accuracy of the human interpreter.
Collapse
Affiliation(s)
- Ori Preis
- Department of Radiology, Massachusetts General Hospital and Harvard Medical School, 55 Fruit St, Boston, MA 02114, USA.
| | | | | |
Collapse
|
34
|
Lee MC, Boroczky L, Sungur-Stasik K, Cann AD, Borczuk AC, Kawut SM, Powell CA. Computer-aided diagnosis of pulmonary nodules using a two-step approach for feature selection and classifier ensemble construction. Artif Intell Med 2010; 50:43-53. [PMID: 20570118 DOI: 10.1016/j.artmed.2010.04.011] [Citation(s) in RCA: 92] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2008] [Revised: 04/04/2010] [Accepted: 04/04/2010] [Indexed: 12/20/2022]
Abstract
OBJECTIVE Accurate classification methods are critical in computer-aided diagnosis (CADx) and other clinical decision support systems. Previous research has reported on methods for combining genetic algorithm (GA) feature selection with ensemble classifier systems in an effort to increase classification accuracy. In this study, we describe a CADx system for pulmonary nodules using a two-step supervised learning system combining a GA with the random subspace method (RSM), with the aim of exploring algorithm design parameters and demonstrating improved classification performance over either the GA or RSM-based ensembles alone. METHODS AND MATERIALS We used a retrospective database of 125 pulmonary nodules (63 benign; 62 malignant) with CT volumes and clinical history. A total of 216 features were derived from the segmented image data and clinical history. Ensemble classifiers using RSM or GA-based feature selection were constructed and tested via leave-one-out validation with feature selection and classifier training executed within each iteration. We further tested a two-step approach using a GA ensemble to first assess the relevance of the features, and then using this information to control feature selection during a subsequent RSM step. The base classification was performed using linear discriminant analysis (LDA). RESULTS The RSM classifier alone achieved a maximum leave-one-out Az of 0.866 (95% confidence interval: 0.794-0.919) at a subset size of s=36 features. The GA ensemble yielded an Az of 0.851 (0.775-0.907). The proposed two-step algorithm produced a maximum Az value of 0.889 (0.823-0.936) when the GA ensemble was used to completely remove less relevant features from the second RSM step, with similar results obtained when the GA-LDA results were used to reduce but not eliminate the occurrence of certain features. After accounting for correlations in the data, the leave-one-out Az in the two-step method was significantly higher than in the RSM and the GA-LDA. CONCLUSIONS We have developed a CADx system for evaluation of pulmonary nodule based on a two-step feature selection and ensemble classifier algorithm. We have shown that by combining classifier ensemble algorithms in this two-step manner, it is possible to predict the malignancy for solitary pulmonary nodules with a performance exceeding that of either of the individual steps.
Collapse
Affiliation(s)
- Michael C Lee
- Philips Research North America, 345 Scarborough Road, Briarcliff Manor, NY 10510-2099, USA.
| | | | | | | | | | | | | |
Collapse
|
35
|
Sousa JRFDS, Silva AC, de Paiva AC, Nunes RA. Methodology for automatic detection of lung nodules in computerized tomography images. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2010; 98:1-14. [PMID: 19709774 DOI: 10.1016/j.cmpb.2009.07.006] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/08/2009] [Revised: 07/13/2009] [Accepted: 07/17/2009] [Indexed: 05/28/2023]
Abstract
Lung cancer is a disease with significant prevalence in several countries around the world. Its difficult treatment and rapid progression make the mortality rates among people affected by this illness to be very high. Aiming to offer a computational alternative for helping in detection of nodules, serving as a second opinion to the specialists, this work proposes a totally automatic methodology based on successive detection refining stages. The automated lung nodules detection scheme consists of six stages: thorax extraction, lung extraction, lung reconstruction, structures extraction, tubular structures elimination, and false positive reduction. In the thorax extraction stage all the artifacts external to the patient's body are discarded. Lung extraction stage is responsible for the identification of the lung parenchyma. The objective of the lung reconstruction stage is to prevent incorrect elimination of portions belonging to the parenchyma. Structures extraction stage comprises the selection of dense structures from inside the lung parenchyma. The next stage, tubular structures elimination eliminates a great part of the pulmonary trees. Finally, the false positive stage selects only structures with great probability to be nodule. Each of the several stages has very specific objectives in detection of particular cases of lung nodules, ensuring good matching rates even in difficult detection situations. We use 33 exams with diversified diagnosis and slices numbers for validating the methodology. We obtained a false positive per exam rate of 0.42 and false negative rate of 0.15. The total classification sensitivity obtained, measured out of the nodule candidates, was 84.84%. The specificity achieved was 96.15% and the total accuracy of the method was 95.21%.
Collapse
|
36
|
Fraioli F, Serra G, Passariello R. CAD (computed-aided detection) and CADx (computer aided diagnosis) systems in identifying and characterising lung nodules on chest CT: overview of research, developments and new prospects. Radiol Med 2010; 115:385-402. [PMID: 20077046 DOI: 10.1007/s11547-010-0507-2] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2009] [Accepted: 04/27/2009] [Indexed: 02/07/2023]
Abstract
Computer-aided detection (CAD) systems allow the automatic identification of lung nodules on chest computed tomography (CT), providing a second opinion to the radiologist's judgement and a volumetric evaluation of lesions - a very important aspect in oncological patients. The natural evolution of these systems has led to the introduction of computer-aided diagnosis (CADx) systems, which are able not only to identify nodules but also to characterise them by determining a likelihood of malignancy or benignity. The aim of this article is to describe the main technical principles of CAD and CADx systems, their applicability and influence in clinical practice and new prospects for their future development.
Collapse
Affiliation(s)
- F Fraioli
- Department of Radiological Sciences, University of Rome La Sapienza, V.le Regina Elena 324, 00161, Rome, Italy.
| | | | | |
Collapse
|
37
|
Savelonas M, Maroulis D, Sangriotis M. A computer-aided system for malignancy risk assessment of nodules in thyroid US images based on boundary features. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2009; 96:25-32. [PMID: 19414207 DOI: 10.1016/j.cmpb.2009.04.001] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/08/2008] [Revised: 02/28/2009] [Accepted: 04/01/2009] [Indexed: 05/27/2023]
Abstract
In this paper, a novel computer-based approach is proposed for malignancy risk assessment of thyroid nodules in ultrasound images. The proposed approach is based on boundary features and is motivated by the correlation which has been addressed in medical literature between nodule boundary irregularity and malignancy risk. In addition, local echogenicity variance is utilized so as to incorporate information associated with local echogenicity distribution within nodule boundary neighborhood. Such information is valuable for the discrimination of high-risk nodules with blurred boundaries from medium-risk nodules with regular boundaries. Analysis of variance is performed, indicating that each boundary feature under study provides statistically significant information for the discrimination of thyroid nodules in ultrasound images, in terms of malignancy risk. k-nearest neighbor and support vector machine classifiers are employed for the classification tasks, utilizing feature vectors derived from all combinations of features under study. The classification results are evaluated with the use of the receiver operating characteristic. It is derived that the proposed approach is capable of discriminating between medium-risk and high-risk nodules, obtaining an area under curve, which reaches 0.95.
Collapse
Affiliation(s)
- Michalis Savelonas
- Department of Informatics and Telecommunications, University of Athens, Greece.
| | | | | |
Collapse
|
38
|
Computer-Aided Diagnosis Systems for Brain Diseases in Magnetic Resonance Images. ALGORITHMS 2009. [DOI: 10.3390/a2030925] [Citation(s) in RCA: 54] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
|
39
|
Cardinale L, Ardissone F, Novello S, Busso M, Solitro F, Longo M, Sardo D, Giors M, Fava C. The pulmonary nodule: clinical and radiological characteristics affecting a diagnosis of malignancy. Radiol Med 2009; 114:871-89. [DOI: 10.1007/s11547-009-0399-1] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2008] [Accepted: 10/06/2008] [Indexed: 12/19/2022]
|
40
|
Kitajima M, Hirai T, Katsuragawa S, Okuda T, Fukuoka H, Sasao A, Akter M, Awai K, Nakayama Y, Ikeda R, Yamashita Y, Yano S, Kuratsu JI, Doi K. Differentiation of common large sellar-suprasellar masses effect of artificial neural network on radiologists' diagnosis performance. Acad Radiol 2009; 16:313-20. [PMID: 19201360 DOI: 10.1016/j.acra.2008.09.015] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2008] [Revised: 09/14/2008] [Accepted: 09/14/2008] [Indexed: 10/21/2022]
Abstract
RATIONALE AND OBJECTIVES When pituitary adenoma, craniopharyngioma, and Rathke's cleft cyst grow in the sellar and suprasellar region, it is often difficult to differentiate among these three lesions on magnetic resonance (MR) images. The purpose of this study was to apply an artificial neural network (ANN) for differential diagnosis among these three lesions with MR images and retrospectively evaluate the effect of ANN output on radiologists' performance. MATERIALS AND METHODS Forty-three patients with sellar-suprasellar masses were studied. The ANN was designed to differentiate among pituitary adenoma, craniopharyngioma, and Rathke's cleft cyst by using patients' ages and nine MR image findings obtained by three neuroradiologists using a subjective rating scale. In the observer performance test, MR images were viewed by nine radiologists, including four neuroradiologists and five general radiologists, first without and then with ANN output. The radiologists' performance was evaluated using receiver-operating characteristic analysis with a continuous rating scale. RESULTS The ANN showed high performance in differentiation among the three lesions (area under the receiver-operating characteristic curve, 0.990). The average area under the curve for all radiologists for differentiation among the three lesions increased significantly from 0.910 to 0.985 (P = .0024) when they used the computer output. Areas under the curves for the general radiologists and neuroradiologists increased from 0.876 to 0.983 (P = .0083) and from 0.952 to 0.989 (P = .038), respectively. CONCLUSION In diagnostic performance for differentiation among pituitary macroadenoma, craniopharyngioma, and Rathke's cleft cyst with MR imaging, the ANN resulted in parity between neuroradiologists and general radiologists.
Collapse
|
41
|
Zhu Y, Tan Y, Hua Y, Wang M, Zhang G, Zhang J. Feature selection and performance evaluation of support vector machine (SVM)-based classifier for differentiating benign and malignant pulmonary nodules by computed tomography. J Digit Imaging 2009; 23:51-65. [PMID: 19242759 DOI: 10.1007/s10278-009-9185-9] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2008] [Revised: 11/28/2008] [Accepted: 01/04/2009] [Indexed: 10/21/2022] Open
Abstract
There are lots of work being done to develop computer-assisted diagnosis and detection (CAD) technologies and systems to improve the diagnostic quality for pulmonary nodules. Another way to improve accuracy of diagnosis on new images is to recall or find images with similar features from archived historical images which already have confirmed diagnostic results, and the content-based image retrieval (CBIR) technology has been proposed for this purpose. In this paper, we present a method to find and select texture features of solitary pulmonary nodules (SPNs) detected by computed tomography (CT) and evaluate the performance of support vector machine (SVM)-based classifiers in differentiating benign from malignant SPNs. Seventy-seven biopsy-confirmed CT cases of SPNs were included in this study. A total of 67 features were extracted by a feature extraction procedure, and around 25 features were finally selected after 300 genetic generations. We constructed the SVM-based classifier with the selected features and evaluated the performance of the classifier by comparing the classification results of the SVM-based classifier with six senior radiologists' observations. The evaluation results not only showed that most of the selected features are characteristics frequently considered by radiologists and used in CAD analyses previously reported in classifying SPNs, but also indicated that some newly found features have important contribution in differentiating benign from malignant SPNs in SVM-based feature space. The results of this research can be used to build the highly efficient feature index of a CBIR system for CT images with pulmonary nodules.
Collapse
Affiliation(s)
- Yanjie Zhu
- Shanghai Institute of Technical Physics, Chinese Academy of Sciences, 500 Yu Tian Road, Shanghai, 200083, China
| | | | | | | | | | | |
Collapse
|
42
|
Giger ML, Chan HP, Boone J. Anniversary paper: History and status of CAD and quantitative image analysis: the role of Medical Physics and AAPM. Med Phys 2009; 35:5799-820. [PMID: 19175137 PMCID: PMC2673617 DOI: 10.1118/1.3013555] [Citation(s) in RCA: 165] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023] Open
Abstract
The roles of physicists in medical imaging have expanded over the years, from the study of imaging systems (sources and detectors) and dose to the assessment of image quality and perception, the development of image processing techniques, and the development of image analysis methods to assist in detection and diagnosis. The latter is a natural extension of medical physicists' goals in developing imaging techniques to help physicians acquire diagnostic information and improve clinical decisions. Studies indicate that radiologists do not detect all abnormalities on images that are visible on retrospective review, and they do not always correctly characterize abnormalities that are found. Since the 1950s, the potential use of computers had been considered for analysis of radiographic abnormalities. In the mid-1980s, however, medical physicists and radiologists began major research efforts for computer-aided detection or computer-aided diagnosis (CAD), that is, using the computer output as an aid to radiologists-as opposed to a completely automatic computer interpretation-focusing initially on methods for the detection of lesions on chest radiographs and mammograms. Since then, extensive investigations of computerized image analysis for detection or diagnosis of abnormalities in a variety of 2D and 3D medical images have been conducted. The growth of CAD over the past 20 years has been tremendous-from the early days of time-consuming film digitization and CPU-intensive computations on a limited number of cases to its current status in which developed CAD approaches are evaluated rigorously on large clinically relevant databases. CAD research by medical physicists includes many aspects-collecting relevant normal and pathological cases; developing computer algorithms appropriate for the medical interpretation task including those for segmentation, feature extraction, and classifier design; developing methodology for assessing CAD performance; validating the algorithms using appropriate cases to measure performance and robustness; conducting observer studies with which to evaluate radiologists in the diagnostic task without and with the use of the computer aid; and ultimately assessing performance with a clinical trial. Medical physicists also have an important role in quantitative imaging, by validating the quantitative integrity of scanners and developing imaging techniques, and image analysis tools that extract quantitative data in a more accurate and automated fashion. As imaging systems become more complex and the need for better quantitative information from images grows, the future includes the combined research efforts from physicists working in CAD with those working on quantitative imaging systems to readily yield information on morphology, function, molecular structure, and more-from animal imaging research to clinical patient care. A historical review of CAD and a discussion of challenges for the future are presented here, along with the extension to quantitative image analysis.
Collapse
Affiliation(s)
- Maryellen L Giger
- Department of Radiology, University of Chicago, Chicago, Illinois 60637, USA.
| | | | | |
Collapse
|
43
|
Thomas MA, Lipnick S, Velan SS, Liu X, Banakar S, Binesh N, Ramadan S, Ambrosio A, Raylman RR, Sayre J, DeBruhl N, Bassett L. Investigation of breast cancer using two-dimensional MRS. NMR IN BIOMEDICINE 2009; 22:77-91. [PMID: 19086016 DOI: 10.1002/nbm.1310] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
Proton (1H) MRS enables non-invasive biochemical assay with the potential to characterize malignant, benign and healthy breast tissues. In vitro studies using perchloric acid extracts and ex vivo magic angle spinning spectroscopy of intact biopsy tissues have been used to identify detectable metabolic alterations in breast cancer. The challenges of 1H MRS in vivo include low sensitivity and significant overlap of resonances due to limited chemical shift dispersion and significant inhomogeneous broadening at most clinical magnetic field strengths. Improvement in spectral resolution can be achieved in vivo and in vitro by recording the MR spectra spread over more than one dimension, thus facilitating unambiguous assignment of metabolite and lipid resonances in breast cancer. This article reviews the recent progress with two-dimensional MRS of breast cancer in vitro, ex vivo and in vivo. The discussion includes unambiguous detection of saturated and unsaturated fatty acids, as well as choline-containing groups such as free choline, phosphocholine, glycerophosphocholine and ethanolamines using two-dimensional MRS. In addition, characterization of invasive ductal carcinomas and healthy fatty/glandular breast tissues non-invasively using the classification and regression tree (CART) analysis of two-dimensional MRS data is reviewed.
Collapse
Affiliation(s)
- M Albert Thomas
- Department of Radiological Sciences, David Geffen School of Medicine, University of California, Los Angeles, CA 90095-1721, USA.
| | | | | | | | | | | | | | | | | | | | | | | |
Collapse
|
44
|
|
45
|
Jang JH, Park SH, Choi JH, Lee CY, Hwang YI, Shin TR, Park YB, Lee JY, Jang SH, Kim CH, Park SM, Kim DG, Lee MG, Hyun IG, Jung KS. A Study to Validate the Pretest Probability of Malignancy in Solitary Pulmonary Nodule. Tuberc Respir Dis (Seoul) 2009. [DOI: 10.4046/trd.2009.67.2.105] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022] Open
Affiliation(s)
- Joo Hyun Jang
- Department of Internal Medicine, Hallym University College of Medicine, Chuncheon, Korea
| | - Sung Hoon Park
- Department of Internal Medicine, Hallym University College of Medicine, Chuncheon, Korea
| | - Jeong Hee Choi
- Department of Internal Medicine, Hallym University College of Medicine, Chuncheon, Korea
| | - Chang Youl Lee
- Department of Internal Medicine, Hallym University College of Medicine, Chuncheon, Korea
| | - Yong Il Hwang
- Department of Internal Medicine, Hallym University College of Medicine, Chuncheon, Korea
| | - Tae Rim Shin
- Department of Internal Medicine, Hallym University College of Medicine, Chuncheon, Korea
| | - Yong Bum Park
- Department of Internal Medicine, Hallym University College of Medicine, Chuncheon, Korea
| | - Jae Young Lee
- Department of Internal Medicine, Hallym University College of Medicine, Chuncheon, Korea
| | - Seung Hun Jang
- Department of Internal Medicine, Hallym University College of Medicine, Chuncheon, Korea
| | - Cheol Hong Kim
- Department of Internal Medicine, Hallym University College of Medicine, Chuncheon, Korea
| | - Sang Myeon Park
- Department of Internal Medicine, Hallym University College of Medicine, Chuncheon, Korea
| | - Dong Gyu Kim
- Department of Internal Medicine, Hallym University College of Medicine, Chuncheon, Korea
| | - Myung Goo Lee
- Department of Internal Medicine, Hallym University College of Medicine, Chuncheon, Korea
| | - In Gyu Hyun
- Department of Internal Medicine, Hallym University College of Medicine, Chuncheon, Korea
| | - Ki Suck Jung
- Department of Internal Medicine, Hallym University College of Medicine, Chuncheon, Korea
| |
Collapse
|
46
|
Jeong YJ, Lee KS, Kwon OJ. Diagnosis and management of solitary pulmonary nodules. Expert Rev Respir Med 2008; 2:767-77. [PMID: 20477238 DOI: 10.1586/17476348.2.6.767] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
The advent of computed tomography (CT) screening with or without the help of computer-aided detection systems has increased the detection rate of solitary pulmonary nodules (SPNs), including that of early peripheral lung cancer. Helical dynamic (HD)CT, providing the information on morphologic and hemodynamic characteristics with high specificity and reasonably high accuracy, can be used for the initial assessment of SPNs. (18)F-fluorodeoxyglucose PET/CT is more sensitive at detecting malignancy than HDCT. Therefore, PET/CT may be selectively performed to characterize SPNs when HDCT gives an inconclusive diagnosis. Serial volume measurements are currently the most reliable methods for the tissue characterization of subcentimeter nodules. When malignant nodule is highly suspected for subcentimeter nodules, video-assisted thoracoscopic surgery nodule removal after nodule localization using the pulmonary nodule-marker system may be performed for diagnosis and treatment.
Collapse
Affiliation(s)
- Yeon Joo Jeong
- Department of Diagnostic Radiology, Pusan National University Hospital, Pusan National University School of Medicine and Medical Research Institute, Pusan 602-739, Korea
| | | | | |
Collapse
|
47
|
Impact of segmentation uncertainties on computer-aided diagnosis of pulmonary nodules. Int J Comput Assist Radiol Surg 2008. [DOI: 10.1007/s11548-008-0257-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
|
48
|
Abstract
Computed tomography (CT) imaging is playing an increasingly important role in cancer detection, diagnosis, and lesion characterization, and it is the most sensitive test for lung nodule detection. Interpretation of lung nodules involves characterization and integration of clinical and other imaging information. Advances in lung nodule management using CT require optimization of CT data acquisition, postprocessing tools, and computer-aided diagnosis (CAD). The goal of CAD systems being developed is to both assist radiologists in the more sensitive detection of nodules and noninvasively differentiate benign from malignant lesions; the latter is important given that malignant lesions account for between 1% and 11% of pulmonary nodules. The aim of this review is to summarize the current state of the art regarding CAD techniques for the detection and characterization of solitary pulmonary nodules and their potential applications in the clinical workup of these lesions.
Collapse
|
49
|
Computer-aided diagnosis for the differentiation of malignant from benign thyroid nodules on ultrasonography. Acad Radiol 2008; 15:853-8. [PMID: 18572120 DOI: 10.1016/j.acra.2007.12.022] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2007] [Revised: 12/22/2007] [Accepted: 12/25/2008] [Indexed: 11/21/2022]
Abstract
RATIONALE AND OBJECTIVES We sought to evaluate the diagnostic performance of an artificial neural network (ANN) and binary logistic regression (BLR) in differentiating malignant from benign thyroid nodules on ultrasonography. MATERIALS AND METHODS Two experienced radiologists, who were unaware of the histopathological diagnosis, analyzed ultrasonographic (US) features of 109 pathologically proven thyroid lesions (49 malignant and 60 benign) in 96 patients. Each radiologist was asked to evaluate US findings and categorize nodules into one of the two groups (malignant vs. benign) in each case. The following 8 US parameters were assessed for each nodule: size, shape, margin, echogenicity, cystic change, microcalcification, macrocalcification, and halo sign. Statistically significant US findings were obtained with backward stepwise logistic regression and were used for training and testing of the ANN and the BLR. The performance of the ANN and BLR was compared to that of the radiologists using receiver-operating characteristic (ROC) analysis. RESULTS Statistically significant US findings were size, margin, echogenicity, cystic change, and macrocalcification of the nodules. The area under the ROC curve (Az) values of ANN and BLR were 0.9492 +/- 0.0195 and 0.9046 +/- 0.0289, respectively. The Az value was 0.8300 +/- 0.0359 for reader 1 and 0.7600 +/- 0.0409 for reader 2. The Az values for ANN and BLR were significantly higher than those for both radiologists (all p < .05). CONCLUSION The performance of the ANN and the BLR was better than that of the radiologists in the distinction of benign and malignant thyroid nodules.
Collapse
|
50
|
da Silva EC, Silva AC, de Paiva AC, Nunes RA, Gattass M. Diagnosis of solitary lung nodules using the local form of Ripley's K function applied to three-dimensional CT data. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2008; 90:230-239. [PMID: 18403042 DOI: 10.1016/j.cmpb.2008.02.003] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/08/2007] [Revised: 02/08/2008] [Accepted: 02/11/2008] [Indexed: 05/26/2023]
Abstract
This paper analyzes the application of Ripley's K function to characterize lung nodules as malignant or benign in computerized tomography images. The proposed characterization method is based on a selection of measures from Ripley's K function to discriminate between benign and malignant nodules, using stepwise discriminant analysis. Based on the selected measures, a linear discriminant analysis procedure is performed once again in order to predict the classification of each nodule. To evaluate the ability of these features to discriminate the nodules, a set of tests was carried out using a sample of 39 pulmonary nodules, 29 benign and 10 malignant. A leave-one-out procedure was used to provide a less biased estimate of the linear discriminator's performance. The best setting of the analyzed function in the tested sample presented 70.0% of sensitivity but with 100.0% of specificity and 92.3% of accuracy. Thus, preliminary results of this approach are very promising regarding its contribution to the diagnosis of pulmonary nodules, but it still needs to be tested with larger series and associated to other quantitative imaging methods in order to improve global performance.
Collapse
Affiliation(s)
- Erick Corrêa da Silva
- Federal University of Maranhão-UFMA, Av. dos Portugueses, SN, Campus do Bacanga, Bacanga 65085-580, São Luís, MA, Brazil.
| | | | | | | | | |
Collapse
|