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Ebert S, Buffet T, Sermet BS, Marre O, Cessac B. Temporal pattern recognition in retinal ganglion cells is mediated by dynamical inhibitory synapses. Nat Commun 2024; 15:6118. [PMID: 39033142 PMCID: PMC11271269 DOI: 10.1038/s41467-024-50506-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2023] [Accepted: 07/10/2024] [Indexed: 07/23/2024] Open
Abstract
A fundamental task for the brain is to generate predictions of future sensory inputs, and signal errors in these predictions. Many neurons have been shown to signal omitted stimuli during periodic stimulation, even in the retina. However, the mechanisms of this error signaling are unclear. Here we show that depressing inhibitory synapses shape the timing of the response to an omitted stimulus in the retina. While ganglion cells, the retinal output, responded to an omitted flash with a constant latency over many frequencies of the flash sequence, we found that this was not the case once inhibition was blocked. We built a simple circuit model and showed that depressing inhibitory synapses were a necessary component to reproduce our experimental findings. A new prediction of our model is that the accuracy of the constant latency requires a sufficient amount of flashes in the stimulus, which we could confirm experimentally. Depressing inhibitory synapses could thus be a key component to generate the predictive responses observed in the retina, and potentially in many brain areas.
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Affiliation(s)
- Simone Ebert
- INRIA Biovision Team, Université Côte d'Azur, Valbonne, France.
- Institute for Modeling in Neuroscience and Cognition (NeuroMod), Université Côte d'Azur, Nice, France.
- Sorbonne Université, INSERM, CNRS, Institut De La Vision, Paris, France.
| | - Thomas Buffet
- Sorbonne Université, INSERM, CNRS, Institut De La Vision, Paris, France
| | - B Semihcan Sermet
- Sorbonne Université, INSERM, CNRS, Institut De La Vision, Paris, France
- Netherlands Institute for Neuroscience, Amsterdam, The Netherlands
| | - Olivier Marre
- Sorbonne Université, INSERM, CNRS, Institut De La Vision, Paris, France
| | - Bruno Cessac
- INRIA Biovision Team, Université Côte d'Azur, Valbonne, France
- Institute for Modeling in Neuroscience and Cognition (NeuroMod), Université Côte d'Azur, Nice, France
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2
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Despotović D, Joffrois C, Marre O, Chalk M. Encoding surprise by retinal ganglion cells. PLoS Comput Biol 2024; 20:e1011965. [PMID: 38630835 PMCID: PMC11057717 DOI: 10.1371/journal.pcbi.1011965] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2023] [Revised: 04/29/2024] [Accepted: 03/03/2024] [Indexed: 04/19/2024] Open
Abstract
The efficient coding hypothesis posits that early sensory neurons transmit maximal information about sensory stimuli, given internal constraints. A central prediction of this theory is that neurons should preferentially encode stimuli that are most surprising. Previous studies suggest this may be the case in early visual areas, where many neurons respond strongly to rare or surprising stimuli. For example, previous research showed that when presented with a rhythmic sequence of full-field flashes, many retinal ganglion cells (RGCs) respond strongly at the instance the flash sequence stops, and when another flash would be expected. This phenomenon is called the 'omitted stimulus response'. However, it is not known whether the responses of these cells varies in a graded way depending on the level of stimulus surprise. To investigate this, we presented retinal neurons with extended sequences of stochastic flashes. With this stimulus, the surprise associated with a particular flash/silence, could be quantified analytically, and varied in a graded manner depending on the previous sequences of flashes and silences. Interestingly, we found that RGC responses could be well explained by a simple normative model, which described how they optimally combined their prior expectations and recent stimulus history, so as to encode surprise. Further, much of the diversity in RGC responses could be explained by the model, due to the different prior expectations that different neurons had about the stimulus statistics. These results suggest that even as early as the retina many cells encode surprise, relative to their own, internally generated expectations.
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Affiliation(s)
- Danica Despotović
- Institut de la Vision, INSERM, CNRS, Sorbonne Université, Paris, France
| | - Corentin Joffrois
- Institut de la Vision, INSERM, CNRS, Sorbonne Université, Paris, France
| | - Olivier Marre
- Institut de la Vision, INSERM, CNRS, Sorbonne Université, Paris, France
| | - Matthew Chalk
- Institut de la Vision, INSERM, CNRS, Sorbonne Université, Paris, France
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Maheswaranathan N, McIntosh LT, Tanaka H, Grant S, Kastner DB, Melander JB, Nayebi A, Brezovec LE, Wang JH, Ganguli S, Baccus SA. Interpreting the retinal neural code for natural scenes: From computations to neurons. Neuron 2023; 111:2742-2755.e4. [PMID: 37451264 PMCID: PMC10680974 DOI: 10.1016/j.neuron.2023.06.007] [Citation(s) in RCA: 14] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2022] [Revised: 01/30/2023] [Accepted: 06/14/2023] [Indexed: 07/18/2023]
Abstract
Understanding the circuit mechanisms of the visual code for natural scenes is a central goal of sensory neuroscience. We show that a three-layer network model predicts retinal natural scene responses with an accuracy nearing experimental limits. The model's internal structure is interpretable, as interneurons recorded separately and not modeled directly are highly correlated with model interneurons. Models fitted only to natural scenes reproduce a diverse set of phenomena related to motion encoding, adaptation, and predictive coding, establishing their ethological relevance to natural visual computation. A new approach decomposes the computations of model ganglion cells into the contributions of model interneurons, allowing automatic generation of new hypotheses for how interneurons with different spatiotemporal responses are combined to generate retinal computations, including predictive phenomena currently lacking an explanation. Our results demonstrate a unified and general approach to study the circuit mechanisms of ethological retinal computations under natural visual scenes.
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Affiliation(s)
| | - Lane T McIntosh
- Neuroscience Program, Stanford University School of Medicine, Stanford, CA, USA
| | - Hidenori Tanaka
- Department of Applied Physics, Stanford University, Stanford, CA, USA; Physics & Informatics Laboratories, NTT Research, Inc., Sunnyvale, CA, USA; Center for Brain Science, Harvard University, Cambridge, MA, USA
| | - Satchel Grant
- Department of Neurobiology, Stanford University, Stanford, CA, USA
| | - David B Kastner
- Neuroscience Program, Stanford University School of Medicine, Stanford, CA, USA
| | - Joshua B Melander
- Neuroscience Program, Stanford University School of Medicine, Stanford, CA, USA
| | - Aran Nayebi
- Neuroscience Program, Stanford University School of Medicine, Stanford, CA, USA
| | - Luke E Brezovec
- Neuroscience Program, Stanford University School of Medicine, Stanford, CA, USA
| | | | - Surya Ganguli
- Department of Applied Physics, Stanford University, Stanford, CA, USA
| | - Stephen A Baccus
- Department of Neurobiology, Stanford University, Stanford, CA, USA.
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Wang K, Wei A, Fu Y, Wang T, Gao X, Fu B, Zhu Y, Cui B, Zhu M. State-dependent modulation of thalamocortical oscillations by gamma light flicker with different frequencies, intensities, and duty cycles. Front Neuroinform 2022; 16:968907. [PMID: 36081653 PMCID: PMC9445583 DOI: 10.3389/fninf.2022.968907] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2022] [Accepted: 08/01/2022] [Indexed: 11/13/2022] Open
Abstract
Rhythmic light flickers have emerged as useful tools to modulate cognition and rescue pathological oscillations related to neurological disorders by entrainment. However, a mechanistic understanding of the entrainment for different brain oscillatory states and light flicker parameters is lacking. To address this issue, we proposed a biophysical neural network model for thalamocortical oscillations (TCOs) and explored the stimulation effects depending on the thalamocortical oscillatory states and stimulation parameters (frequency, intensity, and duty cycle) using the proposed model and electrophysiology experiments. The proposed model generated alpha, beta, and gamma oscillatory states (with main oscillation frequences at 9, 25, and 35 Hz, respectively), which were successfully transmitted from the thalamus to the cortex. By applying light flicker stimulation, we found that the entrainment was state-dependent and it was more prone to induce entrainment if the flicker perturbation frequency was closer to the endogenous oscillatory frequency. In addition, endogenous oscillation would be accelerated, whereas low-frequency oscillatory power would be suppressed by gamma (30-50 Hz) flickers. Notably, the effects of intensity and duty cycle on entrainment were complex; a high intensity of light flicker did not mean high entrainment possibility, and duty cycles below 50% could induce entrainment easier than those above 50%. Further, we observed entrainment discontinuity during gamma flicker stimulations with different frequencies, attributable to the non-linear characteristics of the network oscillations. These results provide support for the experimental design and clinical applications of the modulation of TCOs by gamma (30-50 Hz) light flicker.
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Affiliation(s)
- Kun Wang
- Institute of Medical Support Technology, Academy of Military Science of Chinese PLA, Tianjin, China
- Department of Occupational Medicine, Tianjin Institute of Environmental and Operational Medicine, Tianjin, China
| | - Aili Wei
- Department of Occupational Medicine, Tianjin Institute of Environmental and Operational Medicine, Tianjin, China
| | - Yu Fu
- Department of Occupational Medicine, Tianjin Institute of Environmental and Operational Medicine, Tianjin, China
| | - Tianhui Wang
- Department of Occupational Medicine, Tianjin Institute of Environmental and Operational Medicine, Tianjin, China
| | - Xiujie Gao
- Department of Occupational Medicine, Tianjin Institute of Environmental and Operational Medicine, Tianjin, China
| | - Bo Fu
- Department of Occupational Medicine, Tianjin Institute of Environmental and Operational Medicine, Tianjin, China
| | - Yingwen Zhu
- Department of Occupational Medicine, Tianjin Institute of Environmental and Operational Medicine, Tianjin, China
| | - Bo Cui
- Department of Occupational Medicine, Tianjin Institute of Environmental and Operational Medicine, Tianjin, China
| | - Mengfu Zhu
- Institute of Medical Support Technology, Academy of Military Science of Chinese PLA, Tianjin, China
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Rozenblit F, Gollisch T. What the salamander eye has been telling the vision scientist's brain. Semin Cell Dev Biol 2020; 106:61-71. [PMID: 32359891 PMCID: PMC7493835 DOI: 10.1016/j.semcdb.2020.04.010] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2020] [Revised: 04/16/2020] [Accepted: 04/16/2020] [Indexed: 12/30/2022]
Abstract
Salamanders have been habitual residents of research laboratories for more than a century, and their history in science is tightly interwoven with vision research. Nevertheless, many vision scientists - even those working with salamanders - may be unaware of how much our knowledge about vision, and particularly the retina, has been shaped by studying salamanders. In this review, we take a tour through the salamander history in vision science, highlighting the main contributions of salamanders to our understanding of the vertebrate retina. We further point out specificities of the salamander visual system and discuss the perspectives of this animal system for future vision research.
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Affiliation(s)
- Fernando Rozenblit
- Department of Ophthalmology, University Medical Center Göttingen, 37073, Göttingen, Germany; Bernstein Center for Computational Neuroscience Göttingen, 37077, Göttingen, Germany
| | - Tim Gollisch
- Department of Ophthalmology, University Medical Center Göttingen, 37073, Göttingen, Germany; Bernstein Center for Computational Neuroscience Göttingen, 37077, Göttingen, Germany.
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Chien VSC, Maess B, Knösche TR. A generic deviance detection principle for cortical On/Off responses, omission response, and mismatch negativity. BIOLOGICAL CYBERNETICS 2019; 113:475-494. [PMID: 31428855 PMCID: PMC6848254 DOI: 10.1007/s00422-019-00804-x] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/18/2019] [Accepted: 08/07/2019] [Indexed: 05/04/2023]
Abstract
Neural responses to sudden changes can be observed in many parts of the sensory pathways at different organizational levels. For example, deviants that violate regularity at various levels of abstraction can be observed as simple On/Off responses of individual neurons or as cumulative responses of neural populations. The cortical deviance-related responses supporting different functionalities (e.g., gap detection, chunking, etc.) seem unlikely to arise from different function-specific neural circuits, given the relatively uniform and self-similar wiring patterns across cortical areas and spatial scales. Additionally, reciprocal wiring patterns (with heterogeneous combinations of excitatory and inhibitory connections) in the cortex naturally speak in favor of a generic deviance detection principle. Based on this concept, we propose a network model consisting of reciprocally coupled neural masses as a blueprint of a universal change detector. Simulation examples reproduce properties of cortical deviance-related responses including the On/Off responses, the omitted-stimulus response (OSR), and the mismatch negativity (MMN). We propose that the emergence of change detectors relies on the involvement of disinhibition. An analysis of network connection settings further suggests a supportive effect of synaptic adaptation and a destructive effect of N-methyl-D-aspartate receptor (NMDA-r) antagonists on change detection. We conclude that the nature of cortical reciprocal wiring gives rise to a whole range of local change detectors supporting the notion of a generic deviance detection principle. Several testable predictions are provided based on the network model. Notably, we predict that the NMDA-r antagonists would generally dampen the cortical Off response, the cortical OSR, and the MMN.
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Affiliation(s)
- Vincent S. C. Chien
- Max Planck Institute for Human Cognitive and Brain Sciences, Stephanstraße 1a, Leipzig, Germany
| | - Burkhard Maess
- Max Planck Institute for Human Cognitive and Brain Sciences, Stephanstraße 1a, Leipzig, Germany
| | - Thomas R. Knösche
- Max Planck Institute for Human Cognitive and Brain Sciences, Stephanstraße 1a, Leipzig, Germany
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Hunzinger JF, Chan VH, Froemke RC. Learning complex temporal patterns with resource-dependent spike timing-dependent plasticity. J Neurophysiol 2012; 108:551-66. [PMID: 22496526 DOI: 10.1152/jn.01150.2011] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
Studies of spike timing-dependent plasticity (STDP) have revealed that long-term changes in the strength of a synapse may be modulated substantially by temporal relationships between multiple presynaptic and postsynaptic spikes. Whereas long-term potentiation (LTP) and long-term depression (LTD) of synaptic strength have been modeled as distinct or separate functional mechanisms, here, we propose a new shared resource model. A functional consequence of our model is fast, stable, and diverse unsupervised learning of temporal multispike patterns with a biologically consistent spiking neural network. Due to interdependencies between LTP and LTD, dendritic delays, and proactive homeostatic aspects of the model, neurons are equipped to learn to decode temporally coded information within spike bursts. Moreover, neurons learn spike timing with few exposures in substantial noise and jitter. Surprisingly, despite having only one parameter, the model also accurately predicts in vitro observations of STDP in more complex multispike trains, as well as rate-dependent effects. We discuss candidate commonalities in natural long-term plasticity mechanisms.
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Gollisch T, Meister M. Eye smarter than scientists believed: neural computations in circuits of the retina. Neuron 2010; 65:150-64. [PMID: 20152123 DOI: 10.1016/j.neuron.2009.12.009] [Citation(s) in RCA: 386] [Impact Index Per Article: 27.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
Abstract
We rely on our visual system to cope with the vast barrage of incoming light patterns and to extract features from the scene that are relevant to our well-being. The necessary reduction of visual information already begins in the eye. In this review, we summarize recent progress in understanding the computations performed in the vertebrate retina and how they are implemented by the neural circuitry. A new picture emerges from these findings that helps resolve a vexing paradox between the retina's structure and function. Whereas the conventional wisdom treats the eye as a simple prefilter for visual images, it now appears that the retina solves a diverse set of specific tasks and provides the results explicitly to downstream brain areas.
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Affiliation(s)
- Tim Gollisch
- Max Planck Institute of Neurobiology, Visual Coding Group, Am Klopferspitz 18, 82152 Martinsried, Germany
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Gao J, Schwartz G, Berry MJ, Holmes P. An oscillatory circuit underlying the detection of disruptions in temporally-periodic patterns. NETWORK (BRISTOL, ENGLAND) 2009; 20:106-135. [PMID: 19568983 PMCID: PMC2752637 DOI: 10.1080/09548980902991705] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
Neurons in diverse brain areas can respond to the interruption of a regular stimulus pattern by firing bursts of spikes. Here we describe a simple model, which permits such responses to periodic stimuli over a substantial frequency range. Focusing on the omitted stimulus response (OSR) in isolated retinas subjected to periodic patterns of dark flashes, we develop a biophysically-realistic model which accounts for resonances in ON bipolar cells. The bipolar cell terminal contains an LRC oscillator whose inductance is modulated by a transient calcium concentration, thus adjusting its resonant frequency to approximately match that of the stimulus. The model reproduces ganglion cell outputs, which sum the ON and OFF bipolar pathways, and it responds to omitted flashes with approximately constant latencies, as observed experimentally.
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Affiliation(s)
- Juan Gao
- Department of Mechanical and Aerospace Engineering, Princeton University, Princeton, NJ 08544, USA.
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