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Turrisi R, Verri A, Barla A. Deep learning-based Alzheimer's disease detection: reproducibility and the effect of modeling choices. Front Comput Neurosci 2024; 18:1360095. [PMID: 39371524 PMCID: PMC11451303 DOI: 10.3389/fncom.2024.1360095] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2023] [Accepted: 09/03/2024] [Indexed: 10/08/2024] Open
Abstract
Introduction Machine Learning (ML) has emerged as a promising approach in healthcare, outperforming traditional statistical techniques. However, to establish ML as a reliable tool in clinical practice, adherence to best practices in data handling, and modeling design and assessment is crucial. In this work, we summarize and strictly adhere to such practices to ensure reproducible and reliable ML. Specifically, we focus on Alzheimer's Disease (AD) detection, a challenging problem in healthcare. Additionally, we investigate the impact of modeling choices, including different data augmentation techniques and model complexity, on overall performance. Methods We utilize Magnetic Resonance Imaging (MRI) data from the ADNI corpus to address a binary classification problem using 3D Convolutional Neural Networks (CNNs). Data processing and modeling are specifically tailored to address data scarcity and minimize computational overhead. Within this framework, we train 15 predictive models, considering three different data augmentation strategies and five distinct 3D CNN architectures with varying convolutional layers counts. The augmentation strategies involve affine transformations, such as zoom, shift, and rotation, applied either concurrently or separately. Results The combined effect of data augmentation and model complexity results in up to 10% variation in prediction accuracy. Notably, when affine transformation are applied separately, the model achieves higher accuracy, regardless the chosen architecture. Across all strategies, the model accuracy exhibits a concave behavior as the number of convolutional layers increases, peaking at an intermediate value. The best model reaches excellent performance both on the internal and additional external testing set. Discussions Our work underscores the critical importance of adhering to rigorous experimental practices in the field of ML applied to healthcare. The results clearly demonstrate how data augmentation and model depth-often overlooked factors- can dramatically impact final performance if not thoroughly investigated. This highlights both the necessity of exploring neglected modeling aspects and the need to comprehensively report all modeling choices to ensure reproducibility and facilitate meaningful comparisons across studies.
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Affiliation(s)
- Rosanna Turrisi
- Department of Informatics, Bioengineering, Robotics and System Engineering (DIBRIS), University of Genoa, Genoa, Italy
- Machine Learning Genoa (MaLGa) Center, University of Genoa, Genoa, Italy
| | - Alessandro Verri
- Department of Informatics, Bioengineering, Robotics and System Engineering (DIBRIS), University of Genoa, Genoa, Italy
- Machine Learning Genoa (MaLGa) Center, University of Genoa, Genoa, Italy
| | - Annalisa Barla
- Department of Informatics, Bioengineering, Robotics and System Engineering (DIBRIS), University of Genoa, Genoa, Italy
- Machine Learning Genoa (MaLGa) Center, University of Genoa, Genoa, Italy
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2
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Ganesan P, Ramesh GP, Falkowski-Gilski P, Falkowska-Gilska B. Detection of Alzheimer's disease using Otsu thresholding with tunicate swarm algorithm and deep belief network. Front Physiol 2024; 15:1380459. [PMID: 39045216 PMCID: PMC11263168 DOI: 10.3389/fphys.2024.1380459] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2024] [Accepted: 06/10/2024] [Indexed: 07/25/2024] Open
Abstract
Introduction: Alzheimer's Disease (AD) is a degenerative brain disorder characterized by cognitive and memory dysfunctions. The early detection of AD is necessary to reduce the mortality rate through slowing down its progression. The prevention and detection of AD is the emerging research topic for many researchers. The structural Magnetic Resonance Imaging (sMRI) is an extensively used imaging technique in detection of AD, because it efficiently reflects the brain variations. Methods: Machine learning and deep learning models are widely applied on sMRI images for AD detection to accelerate the diagnosis process and to assist clinicians for timely treatment. In this article, an effective automated framework is implemented for early detection of AD. At first, the Region of Interest (RoI) is segmented from the acquired sMRI images by employing Otsu thresholding method with Tunicate Swarm Algorithm (TSA). The TSA finds the optimal segmentation threshold value for Otsu thresholding method. Then, the vectors are extracted from the RoI by applying Local Binary Pattern (LBP) and Local Directional Pattern variance (LDPv) descriptors. At last, the extracted vectors are passed to Deep Belief Networks (DBN) for image classification. Results and Discussion: The proposed framework achieves supreme classification accuracy of 99.80% and 99.92% on the Alzheimer's Disease Neuroimaging Initiative (ADNI) and Australian Imaging, Biomarker and Lifestyle flagship work of ageing (AIBL) datasets, which is higher than the conventional detection models.
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Affiliation(s)
- Praveena Ganesan
- Department of Electronics and Communication Engineering, St. Peter’s Institute of Higher Education and Research, Chennai, India
| | - G. P. Ramesh
- Department of Electronics and Communication Engineering, St. Peter’s Institute of Higher Education and Research, Chennai, India
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Shanmugavadivel K, Sathishkumar VE, Cho J, Subramanian M. Advancements in computer-assisted diagnosis of Alzheimer's disease: A comprehensive survey of neuroimaging methods and AI techniques for early detection. Ageing Res Rev 2023; 91:102072. [PMID: 37709055 DOI: 10.1016/j.arr.2023.102072] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2023] [Revised: 09/05/2023] [Accepted: 09/10/2023] [Indexed: 09/16/2023]
Abstract
Alzheimer's Disease (AD) is a brain disorder that causes the brain to shrink and eventually causes brain cells to die. This neurological condition progressively hampers cognitive and memory functions, along with the ability to carry out fundamental tasks over time. From the symptoms it is very difficult to detect during its early stage. It has become necessary to develop a computer assisted diagnostic models for the early AD detection. This survey work, discussed about a review of 110 published AD detection methods and techniques from the year 2011 to till-date. This study lies in its comprehensive exploration of AD detection methods using a range of artificial intelligence (AI) techniques and neuroimaging modalities. By collecting and analysing 50 papers related to AD diagnosis datasets, the study provides a comprehensive understanding of the diversity of input types, subjects, and classes used in AD research. Summarizing 60 papers on methodologies gives researchers a succinct overview of various approaches that contribute to enhancing detection accuracy. From the review, data are acquired and pre-processed form multiple modalities of neuroimaging. This paper mainly focused on review of different datasets used, various feature extraction methods, parameters used in neuro images. To diagnosis the Alzheimer's disease, the existing methods utilized three most common artificial intelligence techniques such as machine learning, deep learning, and transfer learning. We conclude this survey work by providing future perspectives for AD diagnosis at early stage.
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Affiliation(s)
| | - V E Sathishkumar
- Department of Software Engineering, Jeonbuk National University, Jeonju-si, Jeollabuk-do 54896, Republic of Korea
| | - Jaehyuk Cho
- Department of Software Engineering, Jeonbuk National University, Jeonju-si, Jeollabuk-do 54896, Republic of Korea.
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Wen J, Li Y, Fang M, Zhu L, Feng DD, Li P. Fine-Grained and Multiple Classification for Alzheimer's Disease With Wavelet Convolution Unit Network. IEEE Trans Biomed Eng 2023; 70:2592-2603. [PMID: 37030751 DOI: 10.1109/tbme.2023.3256042] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/19/2023]
Abstract
In this article, we propose a novel wavelet convolution unit for the image-oriented neural network to integrate wavelet analysis with a vanilla convolution operator to extract deep abstract features more efficiently. On one hand, in order to acquire non-local receptive fields and avoid information loss, we define a new convolution operation by composing a traditional convolution function and approximate and detailed representations after single-scale wavelet decomposition of source images. On the other hand, multi-scale wavelet decomposition is introduced to obtain more comprehensive multi-scale feature information. Then, we fuse all these cross-scale features to improve the problem of inaccurate localization of singular points. Given the novel wavelet convolution unit, we further design a network based on it for fine-grained Alzheimer's disease classifications (i.e., Alzheimer's disease, Normal controls, early mild cognitive impairment, late mild cognitive impairment). Up to now, only a few methods have studied one or several fine-grained classifications, and even fewer methods can achieve both fine-grained and multi-class classifications. We adopt the novel network and diffuse tensor images to achieve fine-grained classifications, which achieved state-of-the-art accuracy for all eight kinds of fine-grained classifications, up to 97.30%, 95.78%, 95.00%, 94.00%, 97.89%, 95.71%, 95.07%, 93.79%. In order to build a reference standard for Alzheimer's disease classifications, we actually implemented all twelve coarse-grained and fine-grained classifications. The results show that the proposed method achieves solidly high accuracy for them. Its classification ability greatly exceeds any kind of existing Alzheimer's disease classification method.
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Arya AD, Verma SS, Chakarabarti P, Chakrabarti T, Elngar AA, Kamali AM, Nami M. A systematic review on machine learning and deep learning techniques in the effective diagnosis of Alzheimer's disease. Brain Inform 2023; 10:17. [PMID: 37450224 PMCID: PMC10349019 DOI: 10.1186/s40708-023-00195-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2022] [Accepted: 06/02/2023] [Indexed: 07/18/2023] Open
Abstract
Alzheimer's disease (AD) is a brain-related disease in which the condition of the patient gets worse with time. AD is not a curable disease by any medication. It is impossible to halt the death of brain cells, but with the help of medication, the effects of AD can be delayed. As not all MCI patients will suffer from AD, it is required to accurately diagnose whether a mild cognitive impaired (MCI) patient will convert to AD (namely MCI converter MCI-C) or not (namely MCI non-converter MCI-NC), during early diagnosis. There are two modalities, positron emission tomography (PET) and magnetic resonance image (MRI), used by a physician for the diagnosis of Alzheimer's disease. Machine learning and deep learning perform exceptionally well in the field of computer vision where there is a requirement to extract information from high-dimensional data. Researchers use deep learning models in the field of medicine for diagnosis, prognosis, and even to predict the future health of the patient under medication. This study is a systematic review of publications using machine learning and deep learning methods for early classification of normal cognitive (NC) and Alzheimer's disease (AD).This study is an effort to provide the details of the two most commonly used modalities PET and MRI for the identification of AD, and to evaluate the performance of both modalities while working with different classifiers.
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Affiliation(s)
| | | | | | | | - Ahmed A. Elngar
- Faculty of Computers and Artificial Intelligence, Beni-Suef University, Beni-Suef, 62511 Egypt
| | - Ali-Mohammad Kamali
- Department of Neuroscience, School of Advanced Medical Sciences and Technologies, Shiraz University of Medical Sciences, Shiraz, Iran
| | - Mohammad Nami
- Cognitive Neuropsychology Unit, Department of Social Sciences, Canadian University Dubai, Dubai, UAE
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Welton TA, George NM, Ozbay BN, Gentile Polese A, Osborne G, Futia GL, Kushner JK, Kleinschmidt-DeMasters B, Alexander AL, Abosch A, Ojemann S, Restrepo D, Gibson EA. Two-photon microendoscope for label-free imaging in stereotactic neurosurgery. BIOMEDICAL OPTICS EXPRESS 2023; 14:3705-3725. [PMID: 37497482 PMCID: PMC10368057 DOI: 10.1364/boe.492552] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/07/2023] [Revised: 05/26/2023] [Accepted: 06/15/2023] [Indexed: 07/28/2023]
Abstract
We demonstrate a gradient refractive index (GRIN) microendoscope with an outer diameter of ∼1.2 mm and a length of ∼186 mm that can fit into a stereotactic surgical cannula. Two photon imaging at an excitation wavelength of 900 nm showed a field of view of ∼180 microns and a lateral and axial resolution of 0.86 microns and 9.6 microns respectively. The microendoscope was tested by imaging autofluorescence and second harmonic generation (SHG) in label-free human brain tissue. Furthermore, preliminary image analysis indicates that image classification models can predict if an image is from the subthalamic nucleus or the surrounding tissue using conventional, bench-top two-photon autofluorescence.
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Affiliation(s)
- Tarah A. Welton
- Department of Bioengineering, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA
| | - Nicholas M. George
- Neuroscience Graduate Program, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA
| | - Baris N. Ozbay
- Intelligent Imaging Innovations, Denver, Colorado, 80216, USA
| | - Arianna Gentile Polese
- Department of Cell and Developmental Biology, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA
| | - Gregory Osborne
- Department of Cell and Developmental Biology, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA
| | - Gregory L. Futia
- Department of Bioengineering, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA
| | - J. Keenan Kushner
- Neuroscience Graduate Program, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA
- Department of Pharmaceutical Sciences, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA
| | - Bette Kleinschmidt-DeMasters
- Department of Pathology, University of Colorado School of Medicine, Aurora, CO 80045, USA
- Department of Neurology, University of Colorado School of Medicine, Aurora, CO 80045, USA
- Department of Neurosurgery, University of Colorado School of Medicine, Aurora, CO 80045, USA
| | - Allyson L. Alexander
- Department of Neurosurgery, University of Colorado School of Medicine, Aurora, CO 80045, USA
- Division of Pediatric Neurosurgery, Children’s Hospital Colorado, Aurora CO 80045, USA
| | - Aviva Abosch
- Department of Neurosurgery, University of Nebraska Medical Center, Omaha, NE 68198, USA
| | - Steven Ojemann
- Department of Neurosurgery, University of Colorado School of Medicine, Aurora, CO 80045, USA
| | - Diego Restrepo
- Department of Cell and Developmental Biology, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA
| | - Emily A. Gibson
- Department of Bioengineering, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA
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Bazdar A, Hatamian A, Ostadieh J, Nourinia J, Ghobadi C, Mostafapour E. Nonlinear Feature Extraction Methods Based on Dual-Tree Complex Wavelet Transform Subimages of Brain Magnetic Resonance Imaging for the Classification of Multiple Diseases. JOURNAL OF MEDICAL SIGNALS & SENSORS 2023; 13:165-172. [PMID: 37448546 PMCID: PMC10336918 DOI: 10.4103/jmss.jmss_145_21] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2021] [Revised: 03/11/2022] [Accepted: 04/19/2022] [Indexed: 07/15/2023]
Abstract
It has been a long time since we use magnetic resonance imaging (MRI) to detect brain diseases and many useful techniques have been developed for this task. However, there is still a potential for further improvement of classification of brain diseases in order to be sure of the results. In this research we presented, for the first time, a non-linear feature extraction method from the MRI sub-images that are obtained from the three levels of the two-dimensional Dual tree complex wavelet transform (2D DT-CWT) in order to classify multiple brain disease. After extracting the non-linear features from the sub-images, we used the spectral regression discriminant analysis (SRDA) algorithm to reduce the classifying features. Instead of using the deep neural networks that are computationally expensive, we proposed the Hybrid RBF network that uses the k-means and recursive least squares (RLS) algorithm simultaneously in its structure for classification. To evaluate the performance of RBF networks with hybrid learning algorithms, we classify nine brain diseases based on MRI processing using these networks, and compare the results with the previously presented classifiers including, supporting vector machines (SVM) and K-nearest neighbour (KNN). Comprehensive comparisons are made with the recently proposed cases by extracting various types and numbers of features. Our aim in this paper is to reduce the complexity and improve the classifying results with the hybrid RBF classifier and the results showed 100 percent classification accuracy in both the two class and the multiple classification of brain diseases in 8 and 10 classes. In this paper, we provided a low computational and precise method for brain MRI disease classification. the results show that the proposed method is not only accurate but also computationally reasonable.
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Affiliation(s)
- Amir Bazdar
- Department of Electrical and Computer Engineering, Urmia University, Urmia, Iran
- Department of Electrical Engineering, Islamic Azad University, Urmia Brach, Urmia, Iran
| | - Amir Hatamian
- Department of Electrical and Computer Engineering, Urmia University, Urmia, Iran
| | - Javad Ostadieh
- Department of Electrical and Computer Engineering, Urmia University, Urmia, Iran
- Department of Electrical Engineering, Islamic Azad University, Khoy Brach, Khoy, Iran
| | - Javad Nourinia
- Department of Electrical and Computer Engineering, Urmia University, Urmia, Iran
| | - Changiz Ghobadi
- Department of Electrical and Computer Engineering, Urmia University, Urmia, Iran
| | - Ehsan Mostafapour
- Department of Electrical and Computer Engineering, Urmia University, Urmia, Iran
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8
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Dhakhinamoorthy C, Mani SK, Mathivanan SK, Mohan S, Jayagopal P, Mallik S, Qin H. Hybrid Whale and Gray Wolf Deep Learning Optimization Algorithm for Prediction of Alzheimer’s Disease. MATHEMATICS 2023; 11:1136. [DOI: 10.3390/math11051136] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/15/2023]
Abstract
In recent years, finding the optimal solution for image segmentation has become more important in many applications. The whale optimization algorithm (WOA) is a metaheuristic optimization technique that has the advantage of achieving the global optimal solution while also being simple to implement and solving many real-time problems. If the complexity of the problem increases, the WOA may stick to local optima rather than global optima. This could be an issue in obtaining a better optimal solution. For this reason, this paper recommends a hybrid algorithm that is based on a mixture of the WOA and gray wolf optimization (GWO) for segmenting the brain sub regions, such as the gray matter (GM), white matter (WM), ventricle, corpus callosum (CC), and hippocampus (HC). This hybrid mixture consists of two steps, i.e., the WOA and GWO. The proposed method helps in diagnosing Alzheimer’s disease (AD) by segmenting the brain sub regions (SRs) by using a hybrid of the WOA and GWO (H-WOA-GWO, which is represented as HWGO). The segmented region was validated with different measures, and it shows better accuracy results of 92%. Following segmentation, the deep learning classifier was utilized to categorize normal and AD images. The combination of WOA and GWO yields an accuracy of 90%. As a result, it was discovered that the suggested method is a highly successful technique for identifying the ideal solution, and it is paired with a deep learning algorithm for classification.
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Affiliation(s)
- Chitradevi Dhakhinamoorthy
- Department of Computer Science and Engineering, Hindustan Institute of Technology and Science, Chennai 600016, India
| | - Sathish Kumar Mani
- Department of Computer Applications, Hindustan Institute of Technology and Science, Chennai 600016, India
| | - Sandeep Kumar Mathivanan
- School of Information Technology and Engineering, Vellore Institute of Technology, Vellore 632014, India
| | - Senthilkumar Mohan
- School of Information Technology and Engineering, Vellore Institute of Technology, Vellore 632014, India
| | - Prabhu Jayagopal
- School of Information Technology and Engineering, Vellore Institute of Technology, Vellore 632014, India
| | - Saurav Mallik
- Department of Environmental Health, Harvard T.H. Chan School of Public Health, Boston, MA 02115, USA
- Department of Pharmacology & Toxicology, The University of Arizona, Tucson, AZ 85721, USA
| | - Hong Qin
- Department of Computer Science and Engineering, University of Tennessee at Chattanooga, Chattanooga, TN 37403, USA
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9
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Prabha S, Sakthidasan Sankaran K, Chitradevi D. Efficient optimization based thresholding technique for analysis of alzheimer MRIs. Int J Neurosci 2023; 133:201-214. [PMID: 33715571 DOI: 10.1080/00207454.2021.1901696] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
Purpose study: Alzheimer is a type of dementia that usually affects older adults by creating memory loss due to damaged brain cells. The damaged brain cells lead to shrinkage in the size of the brain and it is very difficult to extract the grey matter (GM) and white matter (WM). The segmentation of GM and WM is a challenging task due to its homogeneous nature between the neighborhood tissues. In this proposed system, an attempt has been made to extract GM and WM tissues using optimization-based segmentation techniques.Materials and methods: The optimization method is considered for the classification of normal and alzheimer disease (ad) through magnetic resonance images (mri) using a modified cuckoo search algorithm. Gray Level Co-Occurrence Matrix (GLCM) features are calculated from the extracted GM and WM. Principal Component Analysis (PCA) is adopted for selecting the best features from the GLCM features. Support Vector Machine (SVM) is a classifier which is used to classify the normal and abnormal images. Results: The proposed optimization algorithm provides most promising and efficient level of image segmentation compared to fuzzy c means (fcm), otsu, particle swarm optimization (pso) and cuckoo search (cs). The modified cuckoo yields high accuracy of 96%, sensitivity of 97% and specificity of 94% than other methods due to its powerful searching potential for the proper identification of gray and WM tissues.Conclusions: The results of the classification process proved the effectiveness of the proposed technique in identifying alzheimer affected patients due to its very strong optimization ability. The proposed pipeline helps to diagnose early detection of AD and better assessment of the neuroprotective effect of a therapy.
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Affiliation(s)
- S Prabha
- Department of Electronics and Communication Engineering, Hindustan Institute of Technology and Science, Chennai, India
| | - K Sakthidasan Sankaran
- Department of Electronics and Communication Engineering, Hindustan Institute of Technology and Science, Chennai, India
| | - D Chitradevi
- Department of Computer Science and Engineering, Hindustan Institute of Technology and Science, Chennai, India
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Garg N, Choudhry MS, Bodade RM. A review on Alzheimer's disease classification from normal controls and mild cognitive impairment using structural MR images. J Neurosci Methods 2023; 384:109745. [PMID: 36395961 DOI: 10.1016/j.jneumeth.2022.109745] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2022] [Revised: 10/04/2022] [Accepted: 11/11/2022] [Indexed: 11/16/2022]
Abstract
Alzheimer's disease (AD) is an irreversible neurodegenerative brain disorder that degrades the memory and cognitive ability in elderly people. The main reason for memory loss and reduction in cognitive ability is the structural changes in the brain that occur due to neuronal loss. These structural changes are most conspicuous in the hippocampus, cortex, and grey matter and can be assessed by using neuroimaging techniques viz. Positron Emission Tomography (PET), structural Magnetic Resonance Imaging (MRI) and functional MRI (fMRI), etc. Out of these neuroimaging techniques, structural MRI has evolved as the best technique as it indicates the best soft tissue contrast and high spatial resolution which is important for AD detection. Currently, the focus of researchers is on predicting the conversion of Mild Cognitive Impairment (MCI) into AD. MCI represents the transition state between expected cognitive changes with normal aging and Alzheimer's disease. Not every MCI patient progresses into Alzheimer's disease. MCI can develop into stable MCI (sMCI, patients are called non-converters) or into progressive MCI (pMCI, patients are diagnosed as MCI converters). This paper discusses the prognosis of MCI to AD conversion and presents a review of structural MRI-based studies for AD detection. AD detection framework includes feature extraction, feature selection, and classification process. This paper reviews the studies for AD detection based on different feature extraction methods and machine learning algorithms for classification. The performance of various feature extraction methods has been compared and it has been observed that the wavelet transform-based feature extraction method would give promising results for AD classification. The present study indicates that researchers are successful in classifying AD from Normal Controls (NrmC) but, it still requires a lot of work to be done for MCI/ NrmC and MCI/AD, which would help in detecting AD at its early stage.
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Affiliation(s)
- Neha Garg
- Delhi Technological University, Department of Electronics and Communication, Delhi 110042, India.
| | - Mahipal Singh Choudhry
- Delhi Technological University, Department of Electronics and Communication, Delhi 110042, India.
| | - Rajesh M Bodade
- Military College of Telecommunication Engineering (MCTE), Mhow, Indore 453441, Madhya Pradesh, India.
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Machine Learning and Image Processing Enabled Evolutionary Framework for Brain MRI Analysis for Alzheimer’s Disease Detection. COMPUTATIONAL INTELLIGENCE AND NEUROSCIENCE 2022; 2022:5261942. [PMID: 35419043 PMCID: PMC8995544 DOI: 10.1155/2022/5261942] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/02/2022] [Revised: 02/27/2022] [Accepted: 03/08/2022] [Indexed: 11/29/2022]
Abstract
Alzheimer's disease is characterized by the presence of abnormal protein bundles in the brain tissue, but experts are not yet sure what is causing the condition. To find a cure or aversion, researchers need to know more than just that there are protein differences from the usual; they also need to know how these brain nerves form so that a remedy may be discovered. Machine learning is the study of computational approaches for enhancing performance on a specific task through the process of learning. This article presents an Alzheimer's disease detection framework consisting of image denoising of an MRI input data set using an adaptive mean filter, preprocessing using histogram equalization, and feature extraction by Haar wavelet transform. Classification is performed using LS-SVM-RBF, SVM, KNN, and random forest classifier. An adaptive mean filter removes noise from the existing MRI images. Image quality is enhanced by histogram equalization. Experimental results are compared using parameters such as accuracy, sensitivity, specificity, precision, and recall.
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Balasubramanian K, Np A, K R. Prediction of neuro-degenerative disorders using sunflower optimisation algorithm and Kernel extreme learning machine: A case-study with Parkinson's and Alzheimer's disease. Proc Inst Mech Eng H 2021; 236:438-453. [PMID: 34923855 DOI: 10.1177/09544119211060989] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Parkinson's and Alzheimer's Disease are believed to be most prevalent and common in older people. Several data-mining approaches are employed on the neuro-degenerative data in predicting the disease. A novel method has been built and developed to diagnose Alzheimer's (AD) and Parkinson's (PD) in early stages, which includes image acquisition, pre-processing, feature extraction and selection, followed by classification. The challenge lies in selecting the optimal feature subset for classification. In this work, the Sunflower Optimisation Algorithm (SFO) is employed to select the optimal feature set, which is then fed to the Kernel Extreme Learning Machine (KELM) for classification. The method is tested on the Alzheimer's Disease Neuroimaging Initiative (ADNI) and local dataset for AD, the University of California, Irvine (UCI) machine learning repository and the Istanbul dataset for PD. Experimental outcomes have demonstrated a high accuracy level in both AD and PD diagnosis. For AD diagnosis, the highest classification rate is obtained for the AD versus NC classification using the ADNI dataset (99.32%) and local dataset (98.65%). For PD diagnosis, the highest accuracy of 99.52% and 99.45% is achieved on the UCI and Istanbul datasets, respectively. To show the robustness of the method, the method is compared with other similar methods of feature selection and classification with 10-fold cross-validation (CV) and with unseen data. The method proposed has an excellent prospect, bringing greater convenience to clinicians in making a better solid decision in clinical diagnosis of neuro-degenerative diseases.
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Affiliation(s)
| | - Ananthamoorthy Np
- Hindusthan College of Engineering and Technology, Coimbatore, Tamil Nadu, India
| | - Ramya K
- P A College of Engineering and Technology, Pollachi, Tamil Nadu, India
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Detection of Collaterals from Cone-Beam CT Images in Stroke. SENSORS 2021; 21:s21238099. [PMID: 34884102 PMCID: PMC8662458 DOI: 10.3390/s21238099] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/16/2021] [Revised: 11/09/2021] [Accepted: 11/18/2021] [Indexed: 11/17/2022]
Abstract
Collateral vessels play an important role in the restoration of blood flow to the ischemic tissues of stroke patients, and the quality of collateral flow has major impact on reducing treatment delay and increasing the success rate of reperfusion. Due to high spatial resolution and rapid scan time, advance imaging using the cone-beam computed tomography (CBCT) is gaining more attention over the conventional angiography in acute stroke diagnosis. Detecting collateral vessels from CBCT images is a challenging task due to the presence of noises and artifacts, small-size and non-uniform structure of vessels. This paper presents a technique to objectively identify collateral vessels from non-collateral vessels. In our technique, several filters are used on the CBCT images of stroke patients to remove noises and artifacts, then multiscale top-hat transformation method is implemented on the pre-processed images to further enhance the vessels. Next, we applied three types of feature extraction methods which are gray level co-occurrence matrix (GLCM), moment invariant, and shape to explore which feature is best to classify the collateral vessels. These features are then used by the support vector machine (SVM), random forest, decision tree, and K-nearest neighbors (KNN) classifiers to classify vessels. Finally, the performance of these classifiers is evaluated in terms of accuracy, sensitivity, precision, recall, F-Measure, and area under the receiver operating characteristics curve. Our results show that all classifiers achieve promising classification accuracy above 90% and able to detect the collateral and non-collateral vessels from images.
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14
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Sheng C, Sun Y, Wang M, Wang X, Liu Y, Pang D, Liu J, Bi X, Du W, Zhao M, Li Y, Li X, Jiang J, Han Y. Combining Visual Rating Scales for Medial Temporal Lobe Atrophy and Posterior Atrophy to Identify Amnestic Mild Cognitive Impairment from Cognitively Normal Older Adults: Evidence Based on Two Cohorts. J Alzheimers Dis 2021; 77:323-337. [PMID: 32716355 DOI: 10.3233/jad-200016] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
BACKGROUND Visual rating scales for medial temporal lobe atrophy (MTA) and posterior atrophy (PA) have been reported to be useful for Alzheimer's disease diagnosis in routine clinical practice. OBJECTIVE To investigate the efficacy of combined MTA and PA visual rating scales to discriminate amnestic mild cognitive impairment (aMCI) patients from healthy controls. METHODS This study included T1-weighted MRI images from two different cohorts. In the first cohort, we recruited 73 patients with aMCI and 48 group-matched cognitively normal controls for training and validation. Visual assessments of MTA and PA were carried out for each participant. Global gray matter volume and density were estimated using voxel-based morphometry analysis as the objective reference. We investigated the discriminative power of a single visual rating scale and the combination of the MTA and PA rating scales for identifying aMCI. The second cohort, consisting of 33 aMCI patients and 45 controls, was used to verify the reliability of the visual assessments. RESULTS Compared with the single visual rating scale, the combination of the MTA and PA exhibited the best discriminative power, with an AUC of 0.818±0.041, which was similar to the diagnostic accuracy of the gray matter volumetric measures. The discriminative power of the combined MTA and PA was verified in the second cohort (AUC 0.824±0.058). CONCLUSION The combined MTA and PA rating scales demonstrated practical diagnostic value for distinguishing aMCI patients from controls, suggesting its potential to serve as a convenient and reproducible method to assess the degree of atrophy in clinical settings.
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Affiliation(s)
- Can Sheng
- Department of Neurology, Xuanwu Hospital of Capital Medical University, Beijing, China
| | - Yu Sun
- Department of Neurology, Xuanwu Hospital of Capital Medical University, Beijing, China
| | - Min Wang
- Shanghai Institute for Advanced Communication and Data Science, Shanghai University, Shanghai, China
| | - Xiaoni Wang
- Department of Neurology, Xuanwu Hospital of Capital Medical University, Beijing, China
| | - Yi Liu
- Department of Neurology, Xuanwu Hospital of Capital Medical University, Beijing, China
| | - Dongqing Pang
- Department of Neurology, the First Hospital of Tsinghua University, Beijing, China
| | - Jiaqi Liu
- Department of Neurology, the First Hospital of Tsinghua University, Beijing, China
| | - Xiaoxia Bi
- Department of Neurology, the First Hospital of Tsinghua University, Beijing, China
| | - Wenying Du
- Department of Neurology, Xuanwu Hospital of Capital Medical University, Beijing, China
| | - Mingyan Zhao
- Department of Neurology, Xuanwu Hospital of Capital Medical University, Beijing, China
| | - Yuxia Li
- Department of Neurology, Xuanwu Hospital of Capital Medical University, Beijing, China
| | - Xiaobo Li
- Department of Biomedical Engineering, New Jersey Institute of Technology, Newark, NJ, USA
| | - Jiehui Jiang
- Shanghai Institute for Advanced Communication and Data Science, Shanghai University, Shanghai, China
| | - Ying Han
- Department of Neurology, Xuanwu Hospital of Capital Medical University, Beijing, China.,Center of Alzheimer's Disease, Beijing Institute for Brain Disorders, Beijing, China.,National Clinical Research Center for Geriatric Disorders, Beijing, China
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Song X, Mao M, Qian X. Auto-Metric Graph Neural Network Based on a Meta-Learning Strategy for the Diagnosis of Alzheimer's Disease. IEEE J Biomed Health Inform 2021; 25:3141-3152. [PMID: 33493122 DOI: 10.1109/jbhi.2021.3053568] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
Alzheimer's disease (AD) is the most common cognitive disorder. In recent years, many computer-aided diagnosis techniques have been proposed for AD diagnosis and progression predictions. Among them, graph neural networks (GNNs) have received extensive attention owing to their ability to effectively fuse multimodal features and model the correlation between samples. However, many GNNs for node classification use an entire dataset to construct a large fixed-graph structure, which cannot be used for independent testing. To overcome this limitation while maintaining the advantages of the GNN, we propose an auto-metric GNN (AMGNN) model for AD diagnosis. First, a metric-based meta-learning strategy is introduced to realize inductive learning for independent testing through multiple node classification tasks. In the meta-tasks, the small graphs help make the model insensitive to the sample size, thus improving the performance under small sample size conditions. Furthermore, an AMGNN layer with a probability constraint is designed to realize node similarity metric learning and effectively fuse multimodal data. We verified the model on two tasks based on the TADPOLE dataset: early AD diagnosis and mild cognitive impairment (MCI) conversion prediction. Our model provides excellent performance on both tasks with accuracies of 94.44% and 87.50% and median accuracies of 94.19% and 86.25%, respectively. These results show that our model improves flexibility while ensuring a good classification performance, thus promoting the development of graph-based deep learning algorithms for disease diagnosis.
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16
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Enhancing of dataset using DeepDream, fuzzy color image enhancement and hypercolumn techniques to detection of the Alzheimer's disease stages by deep learning model. Neural Comput Appl 2021. [DOI: 10.1007/s00521-021-05758-5] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
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17
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Zhenya Q, Zhang Z. A hybrid cost-sensitive ensemble for heart disease prediction. BMC Med Inform Decis Mak 2021; 21:73. [PMID: 33632225 PMCID: PMC7905907 DOI: 10.1186/s12911-021-01436-7] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2020] [Accepted: 02/11/2021] [Indexed: 11/23/2022] Open
Abstract
BACKGROUND Heart disease is the primary cause of morbidity and mortality in the world. It includes numerous problems and symptoms. The diagnosis of heart disease is difficult because there are too many factors to analyze. What's more, the misclassification cost could be very high. METHODS A cost-sensitive ensemble method was proposed to improve the efficiency of diagnosis and reduce the misclassification cost. The proposed method contains five heterogeneous classifiers: random forest, logistic regression, support vector machine, extreme learning machine and k-nearest neighbor. T-test was used to investigate if the performance of the ensemble was better than individual classifiers and the contribution of Relief algorithm. RESULTS The best performance was achieved by the proposed method according to ten-fold cross validation. The statistical tests demonstrated that the performance of the proposed ensemble was significantly superior to individual classifiers, and the efficiency of classification was distinctively improved by Relief algorithm. CONCLUSIONS The proposed ensemble gained significantly better results compared with individual classifiers and previous studies, which implies that it can be used as a promising alternative tool in medical decision making for heart disease diagnosis.
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Affiliation(s)
- Qi Zhenya
- College of Management and Economics, Tianjin University, Nankai District, Tianjin, 300072 People’s Republic of China
| | - Zuoru Zhang
- School of Mathematical Science, Hebei Normal University, Yuhua District, Shijiazhuang, 050024 People’s Republic of China
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18
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Chitradevi D, Prabha S, Alex Daniel Prabhu. Diagnosis of Alzheimer disease in MR brain images using optimization techniques. Neural Comput Appl 2021. [DOI: 10.1007/s00521-020-04984-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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19
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Madusanka N, Choi HK, So JH, Choi BK. Alzheimer's Disease Classification Based on Multi-feature Fusion. Curr Med Imaging 2020; 15:161-169. [PMID: 31975662 DOI: 10.2174/1573405614666181012102626] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2018] [Revised: 10/01/2018] [Accepted: 10/05/2018] [Indexed: 11/22/2022]
Abstract
BACKGROUND In this study, we investigated the fusion of texture and morphometric features as a possible diagnostic biomarker for Alzheimer's Disease (AD). METHODS In particular, we classified subjects with Alzheimer's disease, Mild Cognitive Impairment (MCI) and Normal Control (NC) based on texture and morphometric features. Currently, neuropsychiatric categorization provides the ground truth for AD and MCI diagnosis. This can then be supported by biological data such as the results of imaging studies. Cerebral atrophy has been shown to correlate strongly with cognitive symptoms. Hence, Magnetic Resonance (MR) images of the brain are important resources for AD diagnosis. In the proposed method, we used three different types of features identified from structural MR images: Gabor, hippocampus morphometric, and Two Dimensional (2D) and Three Dimensional (3D) Gray Level Co-occurrence Matrix (GLCM). The experimental results, obtained using a 5-fold cross-validated Support Vector Machine (SVM) with 2DGLCM and 3DGLCM multi-feature fusion approaches, indicate that we achieved 81.05% ±1.34, 86.61% ±1.25 correct classification rate with 95% Confidence Interval (CI) falls between (80.75-81.35) and (86.33-86.89) respectively, 83.33%±2.15, 84.21%±1.42 sensitivity and 80.95%±1.52, 85.00%±1.24 specificity in our classification of AD against NC subjects, thus outperforming recent works found in the literature. For the classification of MCI against AD, the SVM achieved a 76.31% ± 2.18, 78.95% ±2.26 correct classification rate, 75.00% ±1.34, 76.19%±1.84 sensitivity and 77.78% ±1.14, 82.35% ±1.34 specificity. RESULTS AND CONCLUSION The results of the third experiment, with MCI against NC, also showed that the multiclass SVM provided highly accurate classification results. These findings suggest that this approach is efficient and may be a promising strategy for obtaining better AD, MCI and NC classification performance.
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Affiliation(s)
- Nuwan Madusanka
- Department of Computer Engineering, u-AHRC, Inje University, Gimhae, Gyeongsangnam, Korea
| | - Heung-Kook Choi
- Department of Computer Engineering, u-AHRC, Inje University, Gimhae, Gyeongsangnam, Korea
| | - Jae-Hong So
- Department of Digital Anti-Aging Healthcare, u-AHRC, Inje University, Gimhae, Gyeongsangnam, Korea
| | - Boo-Kyeong Choi
- Department of Digital Anti-Aging Healthcare, u-AHRC, Inje University, Gimhae, Gyeongsangnam, Korea
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20
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Diagnosis of Alzheimer's disease using universum support vector machine based recursive feature elimination (USVM-RFE). Biomed Signal Process Control 2020. [DOI: 10.1016/j.bspc.2020.101903] [Citation(s) in RCA: 61] [Impact Index Per Article: 15.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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21
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3D Textural, Morphological and Statistical Analysis of Voxel of Interests in 3T MRI Scans for the Detection of Parkinson's Disease Using Artificial Neural Networks. Healthcare (Basel) 2020; 8:healthcare8010034. [PMID: 32046073 PMCID: PMC7151461 DOI: 10.3390/healthcare8010034] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2020] [Revised: 01/31/2020] [Accepted: 02/05/2020] [Indexed: 12/20/2022] Open
Abstract
Parkinson's disease is caused due to the progressive loss of dopaminergic neurons in the substantia nigra pars compacta (SNc). Presently, with the exponential growth of the aging population across the world the number of people being affected by the disease is also increasing and it imposes a huge economic burden on the governments. However, to date, no therapy or treatment has been found that can completely eradicate the disease. Therefore, early detection of Parkinson's disease is very important so that the progressive loss of dopaminergic neurons can be controlled to provide the patients with a better life. In this study, 3T T1-MRI scans were collected from 906 subjects, out of which, 203 are control subjects, 66 are prodromal subjects and 637 are Parkinson's disease patients. To analyze the MRI scans for the detection of neurodegeneration and Parkinson's disease, eight subcortical structures were segmented from the acquired MRI scans using atlas based segmentation. Further, on the extracted eight subcortical structures, feature extraction was performed to extract textural, morphological and statistical features, respectively. After the feature extraction process, an exhaustive set of 107 features were generated for each MRI scan. Therefore, a two-level feature extraction process was implemented for finding the best possible feature set for the detection of Parkinson's disease. The two-level feature extraction procedure leveraged correlation analysis and recursive feature elimination, which at the end provided us with 20 best performing features out of the extracted 107 features. Further, all the features were trained using machine learning algorithms and a comparative analysis was performed between four different machine learning algorithms based on the selected performance metrics. And at the end, it was observed that artificial neural network (multi-layer perceptron) performed the best by providing an overall accuracy of 95.3%, overall recall of 95.41%, overall precision of 97.28% and f1-score of 94%, respectively.
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22
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Choi BK, Madusanka N, Choi HK, So JH, Kim CH, Park HG, Bhattacharjee S, Prakash D. Convolutional Neural Network-based MR Image Analysis for Alzheimer’s Disease Classification. Curr Med Imaging 2020; 16:27-35. [DOI: 10.2174/1573405615666191021123854] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2019] [Revised: 10/11/2019] [Accepted: 10/12/2019] [Indexed: 01/28/2023]
Abstract
Background:
In this study, we used a convolutional neural network (CNN) to classify
Alzheimer’s disease (AD), mild cognitive impairment (MCI), and normal control (NC) subjects
based on images of the hippocampus region extracted from magnetic resonance (MR) images of
the brain.
Materials and Methods:
The datasets used in this study were obtained from the Alzheimer's Disease Neuroimaging
Initiative (ADNI). To segment the hippocampal region automatically, the patient brain MR
images were matched to the International Consortium for Brain Mapping template (ICBM) using
3D-Slicer software. Using prior knowledge and anatomical annotation label information,
the hippocampal region was automatically extracted from the brain MR images.
Results:
The area of the hippocampus in each image was preprocessed using local entropy minimization
with a bi-cubic spline model (LEMS) by an inhomogeneity intensity correction method.
To train the CNN model, we separated the dataset into three groups, namely AD/NC, AD/MCI,
and MCI/NC. The prediction model achieved an accuracy of 92.3% for AD/NC, 85.6% for
AD/MCI, and 78.1% for MCI/NC.
Conclusion:
The results of this study were compared to those of previous studies, and summarized
and analyzed to facilitate more flexible analyses based on additional experiments. The classification
accuracy obtained by the proposed method is highly accurate. These findings suggest
that this approach is efficient and may be a promising strategy to obtain good AD, MCI and
NC classification performance using small patch images of hippocampus instead of whole slide
images.
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Affiliation(s)
- Boo-Kyeong Choi
- Department of Digital Anti-Aging Healthcare, u-AHRC, Inje University, Gimhae, Korea
| | - Nuwan Madusanka
- Department of Computer Engineering, u-AHRC, Inje University, Gimhae, Korea
| | - Heung-Kook Choi
- Department of Computer Engineering, u-AHRC, Inje University, Gimhae, Korea
| | - Jae-Hong So
- Department of Digital Anti-Aging Healthcare, u-AHRC, Inje University, Gimhae, Korea
| | - Cho-Hee Kim
- Department of Digital Anti-Aging Healthcare, u-AHRC, Inje University, Gimhae, Korea
| | - Hyeon-Gyun Park
- Department of Computer Engineering, u-AHRC, Inje University, Gimhae, Korea
| | | | - Deekshitha Prakash
- Department of Computer Engineering, u-AHRC, Inje University, Gimhae, Korea
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23
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Chitradevi D, Prabha S. Analysis of brain sub regions using optimization techniques and deep learning method in Alzheimer disease. Appl Soft Comput 2020. [DOI: 10.1016/j.asoc.2019.105857] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Basheera S, Sai Ram MS. Convolution neural network-based Alzheimer's disease classification using hybrid enhanced independent component analysis based segmented gray matter of T2 weighted magnetic resonance imaging with clinical valuation. ALZHEIMERS & DEMENTIA-TRANSLATIONAL RESEARCH & CLINICAL INTERVENTIONS 2019; 5:974-986. [PMID: 31921971 PMCID: PMC6944731 DOI: 10.1016/j.trci.2019.10.001] [Citation(s) in RCA: 31] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Abstract
In recent times, accurate and early diagnosis of Alzheimer's disease (AD) plays a vital role in patient care and further treatment. Predicting AD from mild cognitive impairment (MCI) and cognitive normal (CN) has become popular. Neuroimaging and computer-aided diagnosis techniques are used for classification of AD by physicians in the early stage. Most of the previous machine learning techniques work on handpicked features. In the recent days, deep learning has been applied for many medical image applications. Existing deep learning systems work on raw magnetic resonance imaging (MRI) images and cortical surface as an input to the convolution neural network (CNN) to perform classification of AD. AD affects the brain volume and changes the gray matter texture. In our work, we used 1820 T2-weighted brain magnetic resonance volumes including 635 AD MRIs, 548 MCI MRIs, and 637 CN MRIs, sliced into 18,017 voxels. We proposed an approach to extract the gray matter from brain voxels and perform the classification using the CNN. A Gaussian filter is used to enhance the voxels, and skull stripping algorithm is used to remove the irrelevant tissues from enhanced voxels. Then, those voxels are segmented by hybrid enhanced independent component analysis. Segmented gray matter is used as an input to the CNN. We performed clinical valuation using our proposed approach and achieved 90.47% accuracy, 86.66% of recall, and 92.59% precision.
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Affiliation(s)
- Shaik Basheera
- Department of ECE, Acharya Nagarjuna University College of Engineering and Technology, Guntur, India
| | - M Satya Sai Ram
- Department of ECE, Acharya Nagarjuna University College of Engineering and Technology, Guntur, India
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25
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Gupta Y, Lee KH, Choi KY, Lee JJ, Kim BC, Kwon GR. Early diagnosis of Alzheimer's disease using combined features from voxel-based morphometry and cortical, subcortical, and hippocampus regions of MRI T1 brain images. PLoS One 2019; 14:e0222446. [PMID: 31584953 PMCID: PMC6777799 DOI: 10.1371/journal.pone.0222446] [Citation(s) in RCA: 31] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2019] [Accepted: 08/30/2019] [Indexed: 11/28/2022] Open
Abstract
In recent years, several high-dimensional, accurate, and effective classification methods have been proposed for the automatic discrimination of the subject between Alzheimer's disease (AD) or its prodromal phase {i.e., mild cognitive impairment (MCI)} and healthy control (HC) persons based on T1-weighted structural magnetic resonance imaging (sMRI). These methods emphasis only on using the individual feature from sMRI images for the classification of AD, MCI, and HC subjects and their achieved classification accuracy is low. However, latest multimodal studies have shown that combining multiple features from different sMRI analysis techniques can improve the classification accuracy for these types of subjects. In this paper, we propose a novel classification technique that precisely distinguishes individuals with AD, aAD (stable MCI, who had not converted to AD within a 36-month time period), and mAD (MCI caused by AD, who had converted to AD within a 36-month time period) from HC individuals. The proposed method combines three different features extracted from structural MR (sMR) images using voxel-based morphometry (VBM), hippocampal volume (HV), and cortical and subcortical segmented region techniques. Three classification experiments were performed (AD vs. HC, aAD vs. mAD, and HC vs. mAD) with 326 subjects (171 elderly controls and 81 AD, 35 aAD, and 39 mAD patients). For the development and validation of the proposed classification method, we acquired the sMR images from the dataset of the National Research Center for Dementia (NRCD). A five-fold cross-validation technique was applied to find the optimal hyperparameters for the classifier, and the classification performance was compared by using three well-known classifiers: K-nearest neighbor, support vector machine, and random forest. Overall, the proposed model with the SVM classifier achieved the best performance on the NRCD dataset. For the individual feature, the VBM technique provided the best results followed by the HV technique. However, the use of combined features improved the classification accuracy and predictive power for the early classification of AD compared to the use of individual features. The most stable and reliable classification results were achieved when combining all extracted features. Additionally, to analyze the efficiency of the proposed model, we used the Alzheimer's Disease Neuroimaging Initiative (ADNI) dataset to compare the classification performance of the proposed model with those of several state-of-the-art methods.
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Affiliation(s)
- Yubraj Gupta
- School of Information Communication Engineering, Chosun University, Gwangju, Republic of Korea
- National Research Center for Dementia, Chosun University, Gwangju, Republic of Korea
| | - Kun Ho Lee
- National Research Center for Dementia, Chosun University, Gwangju, Republic of Korea
- Department of Biomedical Science, College of Natural Sciences, Chosun University, Gwangju, Republic of Korea
| | - Kyu Yeong Choi
- National Research Center for Dementia, Chosun University, Gwangju, Republic of Korea
| | - Jang Jae Lee
- National Research Center for Dementia, Chosun University, Gwangju, Republic of Korea
| | - Byeong Chae Kim
- National Research Center for Dementia, Chosun University, Gwangju, Republic of Korea
- Department of Neurology, Chonnam National University Medical School, Gwangju, Republic of Korea
| | - Goo Rak Kwon
- School of Information Communication Engineering, Chosun University, Gwangju, Republic of Korea
- National Research Center for Dementia, Chosun University, Gwangju, Republic of Korea
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A Novel Texture Extraction Technique with T1 Weighted MRI for the Classification of Alzheimer’s Disease. J Neurosci Methods 2019; 318:84-99. [DOI: 10.1016/j.jneumeth.2019.01.011] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2018] [Revised: 01/19/2019] [Accepted: 01/19/2019] [Indexed: 02/06/2023]
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