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Hunt WD, McCarty NA, Marin EM, Westafer RS, Yamin PR, Cui G, Eckford AW, Denison DR. A transistor model for the cystic fibrosis transmembrane conductance regulator. BIOPHYSICAL REPORTS 2023; 3:100108. [PMID: 37351179 PMCID: PMC10282560 DOI: 10.1016/j.bpr.2023.100108] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/08/2022] [Accepted: 04/07/2023] [Indexed: 06/24/2023]
Abstract
In this paper we present a transistor circuit model for cystic fibrosis transmembrane conductance regulator (CFTR) that seeks to map the functional form of CFTR both in wild type and mutants. The circuit architecture is configured so that the function, and as much as possible the form, faithfully represents what is known about CFTR from cryo-electron microscopy and molecular dynamics. The model is a mixed analog-digital topology with an AND gate receiving the input from two separate ATP-nucleotide-binding domain binding events. The analog portion of the circuit takes the output from the AND gate as its input. The input to the circuit model and its noise characteristics are extracted from single-channel patch-clamp experiments. The chloride current predicted by the model is then compared with single-channel patch-clamp recordings for wild-type CFTR. We also consider the patch-clamp recordings from CFTR with a G551D point mutation, a clinically relevant mutant that is responsive to therapeutic management. Our circuit model approach enables bioengineering approaches to CFTR and allows biophysicists to use efficient circuit simulation tools to analyze its behavior.
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Affiliation(s)
| | | | | | | | | | - Guiying Cui
- Emory University School of Medicine, Atlanta, Georgia
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Yajima T. Ultra-low-power switching circuits based on a binary pattern generator with spiking neurons. Sci Rep 2022; 12:1150. [PMID: 35064156 PMCID: PMC8782828 DOI: 10.1038/s41598-022-04982-w] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2021] [Accepted: 01/05/2022] [Indexed: 11/09/2022] Open
Abstract
Research on various neuro-inspired technologies has received much attention. However, while higher-order neural functions such as recognition have been emphasized, the fundamental properties of neural circuits as advanced control systems have not been fully exploited. Here, we applied the functions of central pattern generators, biological neural circuits for motor control, to the control technology of switching circuits for extremely power-saving terminal edge devices. By simply applying a binary waveform with an arbitrary temporal pattern to the transistor gate, low-power and real-time switching control can be achieved. This binary pattern generator consists of a specially designed spiking neuron circuit that generates spikes after a pre-programmed wait time in the six-order range, but consumes negligible power, with an experimental record of 1.2 pW per neuron. This control scheme has been successfully applied to voltage conversion circuits consuming only a few nanowatts, providing an ultra-low power technology for trillions of self-powered edge systems.
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Affiliation(s)
- Takeaki Yajima
- Department of Electronics, Kyushu University, Fukuoka-shi, Fukuoka, 819-0395, Japan.
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3
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Castaños F, Franci A. Implementing robust neuromodulation in neuromorphic circuits. Neurocomputing 2017. [DOI: 10.1016/j.neucom.2016.08.099] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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Sourikopoulos I, Hedayat S, Loyez C, Danneville F, Hoel V, Mercier E, Cappy A. A 4-fJ/Spike Artificial Neuron in 65 nm CMOS Technology. Front Neurosci 2017; 11:123. [PMID: 28360831 PMCID: PMC5351272 DOI: 10.3389/fnins.2017.00123] [Citation(s) in RCA: 80] [Impact Index Per Article: 11.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2016] [Accepted: 02/27/2017] [Indexed: 11/13/2022] Open
Abstract
As Moore's law reaches its end, traditional computing technology based on the Von Neumann architecture is facing fundamental limits. Among them is poor energy efficiency. This situation motivates the investigation of different processing information paradigms, such as the use of spiking neural networks (SNNs), which also introduce cognitive characteristics. As applications at very high scale are addressed, the energy dissipation needs to be minimized. This effort starts from the neuron cell. In this context, this paper presents the design of an original artificial neuron, in standard 65 nm CMOS technology with optimized energy efficiency. The neuron circuit response is designed as an approximation of the Morris-Lecar theoretical model. In order to implement the non-linear gating variables, which control the ionic channel currents, transistors operating in deep subthreshold are employed. Two different circuit variants describing the neuron model equations have been developed. The first one features spike characteristics, which correlate well with a biological neuron model. The second one is a simplification of the first, designed to exhibit higher spiking frequencies, targeting large scale bio-inspired information processing applications. The most important feature of the fabricated circuits is the energy efficiency of a few femtojoules per spike, which improves prior state-of-the-art by two to three orders of magnitude. This performance is achieved by minimizing two key parameters: the supply voltage and the related membrane capacitance. Meanwhile, the obtained standby power at a resting output does not exceed tens of picowatts. The two variants were sized to 200 and 35 μm2 with the latter reaching a spiking output frequency of 26 kHz. This performance level could address various contexts, such as highly integrated neuro-processors for robotics, neuroscience or medical applications.
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Affiliation(s)
- Ilias Sourikopoulos
- Centre National de la Recherche Scientifique, Université Lille, USR 3380 - IRCICA Lille, France
| | - Sara Hedayat
- Centre National de la Recherche Scientifique, Université Lille, USR 3380 - IRCICA Lille, France
| | - Christophe Loyez
- Centre National de la Recherche Scientifique, Université Lille, USR 3380 - IRCICALille, France; Centre National de la Recherche Scientifique, Université Lille, ISEN, Université Valenciennes, UMR 8520 - IEMNLille, France
| | - François Danneville
- Centre National de la Recherche Scientifique, Université Lille, USR 3380 - IRCICALille, France; Centre National de la Recherche Scientifique, Université Lille, ISEN, Université Valenciennes, UMR 8520 - IEMNLille, France
| | - Virginie Hoel
- Centre National de la Recherche Scientifique, Université Lille, USR 3380 - IRCICALille, France; Centre National de la Recherche Scientifique, Université Lille, ISEN, Université Valenciennes, UMR 8520 - IEMNLille, France
| | - Eric Mercier
- Université Grenoble Alpes, GrenobleGrenoble, France; CEA, LETI, MINATEC CampusGrenoble, France
| | - Alain Cappy
- Centre National de la Recherche Scientifique, Université Lille, USR 3380 - IRCICALille, France; Centre National de la Recherche Scientifique, Université Lille, ISEN, Université Valenciennes, UMR 8520 - IEMNLille, France
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Abstract
The electrophysiology of action potentials is usually studied in neurons, through relatively demanding experiments which are difficult to scale up to a defined network. Here we pursue instead the minimal artificial system based on the essential biological components-ion channels and lipid bilayers-where action potentials can be generated, propagated, and eventually networked. The fundamental unit is the classic supported bilayer: a planar bilayer patch with embedded ion channels in a fluidic environment where an ionic gradient is imposed across the bilayer. Two such units electrically connected form the basic building block for a network. The system is minimal in that we demonstrate that one kind of ion channel and correspondingly a gradient of only one ionic species is sufficient to generate an excitable system which shows amplification and threshold behavior.
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Affiliation(s)
- Amila Ariyaratne
- Department of Physics and Astronomy, University of California , Los Angeles, California 90095-1547, United States
| | - Giovanni Zocchi
- Department of Physics and Astronomy, University of California , Los Angeles, California 90095-1547, United States
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7
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Qiao N, Mostafa H, Corradi F, Osswald M, Stefanini F, Sumislawska D, Indiveri G. A reconfigurable on-line learning spiking neuromorphic processor comprising 256 neurons and 128K synapses. Front Neurosci 2015; 9:141. [PMID: 25972778 PMCID: PMC4413675 DOI: 10.3389/fnins.2015.00141] [Citation(s) in RCA: 154] [Impact Index Per Article: 17.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2014] [Accepted: 04/06/2015] [Indexed: 11/13/2022] Open
Abstract
Implementing compact, low-power artificial neural processing systems with real-time on-line learning abilities is still an open challenge. In this paper we present a full-custom mixed-signal VLSI device with neuromorphic learning circuits that emulate the biophysics of real spiking neurons and dynamic synapses for exploring the properties of computational neuroscience models and for building brain-inspired computing systems. The proposed architecture allows the on-chip configuration of a wide range of network connectivities, including recurrent and deep networks, with short-term and long-term plasticity. The device comprises 128 K analog synapse and 256 neuron circuits with biologically plausible dynamics and bi-stable spike-based plasticity mechanisms that endow it with on-line learning abilities. In addition to the analog circuits, the device comprises also asynchronous digital logic circuits for setting different synapse and neuron properties as well as different network configurations. This prototype device, fabricated using a 180 nm 1P6M CMOS process, occupies an area of 51.4 mm(2), and consumes approximately 4 mW for typical experiments, for example involving attractor networks. Here we describe the details of the overall architecture and of the individual circuits and present experimental results that showcase its potential. By supporting a wide range of cortical-like computational modules comprising plasticity mechanisms, this device will enable the realization of intelligent autonomous systems with on-line learning capabilities.
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Affiliation(s)
- Ning Qiao
- Institute of Neuroinformatics, University of Zurich and ETH Zurich Zurich, Switzerland
| | - Hesham Mostafa
- Institute of Neuroinformatics, University of Zurich and ETH Zurich Zurich, Switzerland
| | - Federico Corradi
- Institute of Neuroinformatics, University of Zurich and ETH Zurich Zurich, Switzerland
| | - Marc Osswald
- Institute of Neuroinformatics, University of Zurich and ETH Zurich Zurich, Switzerland
| | - Fabio Stefanini
- Institute of Neuroinformatics, University of Zurich and ETH Zurich Zurich, Switzerland
| | - Dora Sumislawska
- Institute of Neuroinformatics, University of Zurich and ETH Zurich Zurich, Switzerland
| | - Giacomo Indiveri
- Institute of Neuroinformatics, University of Zurich and ETH Zurich Zurich, Switzerland
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A biophysically-based neuromorphic model of spike rate- and timing-dependent plasticity. Proc Natl Acad Sci U S A 2011; 108:E1266-74. [PMID: 22089232 DOI: 10.1073/pnas.1106161108] [Citation(s) in RCA: 52] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023] Open
Abstract
Current advances in neuromorphic engineering have made it possible to emulate complex neuronal ion channel and intracellular ionic dynamics in real time using highly compact and power-efficient complementary metal-oxide-semiconductor (CMOS) analog very-large-scale-integrated circuit technology. Recently, there has been growing interest in the neuromorphic emulation of the spike-timing-dependent plasticity (STDP) Hebbian learning rule by phenomenological modeling using CMOS, memristor or other analog devices. Here, we propose a CMOS circuit implementation of a biophysically grounded neuromorphic (iono-neuromorphic) model of synaptic plasticity that is capable of capturing both the spike rate-dependent plasticity (SRDP, of the Bienenstock-Cooper-Munro or BCM type) and STDP rules. The iono-neuromorphic model reproduces bidirectional synaptic changes with NMDA receptor-dependent and intracellular calcium-mediated long-term potentiation or long-term depression assuming retrograde endocannabinoid signaling as a second coincidence detector. Changes in excitatory or inhibitory synaptic weights are registered and stored in a nonvolatile and compact digital format analogous to the discrete insertion and removal of AMPA or GABA receptor channels. The versatile Hebbian synapse device is applicable to a variety of neuroprosthesis, brain-machine interface, neurorobotics, neuromimetic computation, machine learning, and neural-inspired adaptive control problems.
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Indiveri G, Linares-Barranco B, Hamilton TJ, van Schaik A, Etienne-Cummings R, Delbruck T, Liu SC, Dudek P, Häfliger P, Renaud S, Schemmel J, Cauwenberghs G, Arthur J, Hynna K, Folowosele F, Saighi S, Serrano-Gotarredona T, Wijekoon J, Wang Y, Boahen K. Neuromorphic silicon neuron circuits. Front Neurosci 2011; 5:73. [PMID: 21747754 PMCID: PMC3130465 DOI: 10.3389/fnins.2011.00073] [Citation(s) in RCA: 320] [Impact Index Per Article: 24.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2010] [Accepted: 05/07/2011] [Indexed: 11/13/2022] Open
Abstract
Hardware implementations of spiking neurons can be extremely useful for a large variety of applications, ranging from high-speed modeling of large-scale neural systems to real-time behaving systems, to bidirectional brain–machine interfaces. The specific circuit solutions used to implement silicon neurons depend on the application requirements. In this paper we describe the most common building blocks and techniques used to implement these circuits, and present an overview of a wide range of neuromorphic silicon neurons, which implement different computational models, ranging from biophysically realistic and conductance-based Hodgkin–Huxley models to bi-dimensional generalized adaptive integrate and fire models. We compare the different design methodologies used for each silicon neuron design described, and demonstrate their features with experimental results, measured from a wide range of fabricated VLSI chips.
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Affiliation(s)
- Giacomo Indiveri
- Institute of Neuroinformatics, University of Zurich and ETH Zurich Zurich, Switzerland
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Arthur JV, Boahen K. Silicon-Neuron Design: A Dynamical Systems Approach. IEEE TRANSACTIONS ON CIRCUITS AND SYSTEMS. I, REGULAR PAPERS : A PUBLICATION OF THE IEEE CIRCUITS AND SYSTEMS SOCIETY 2011; 58:1034-1043. [PMID: 21617741 PMCID: PMC3100558 DOI: 10.1109/tcsi.2010.2089556] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/11/2023]
Abstract
We present an approach to design spiking silicon neurons based on dynamical systems theory. Dynamical systems theory aids in choosing the appropriate level of abstraction, prescribing a neuron model with the desired dynamics while maintaining simplicity. Further, we provide a procedure to transform the prescribed equations into subthreshold current-mode circuits. We present a circuit design example, a positive-feedback integrate-and-fire neuron, fabricated in 0.25 μm CMOS. We analyze and characterize the circuit, and demonstrate that it can be configured to exhibit desired behaviors, including spike-frequency adaptation and two forms of bursting.
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Yu T, Cauwenberghs G. Analog VLSI Biophysical Neurons and Synapses With Programmable Membrane Channel Kinetics. IEEE TRANSACTIONS ON BIOMEDICAL CIRCUITS AND SYSTEMS 2010; 4:139-148. [PMID: 23853338 DOI: 10.1109/tbcas.2010.2048566] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
We present and characterize an analog VLSI network of 4 spiking neurons and 12 conductance-based synapses, implementing a silicon model of biophysical membrane dynamics and detailed channel kinetics in 384 digitally programmable parameters. Each neuron in the analog VLSI chip (NeuroDyn) implements generalized Hodgkin-Huxley neural dynamics in 3 channel variables, each with 16 parameters defining channel conductance, reversal potential, and voltage-dependence profile of the channel kinetics. Likewise, 12 synaptic channel variables implement a rate-based first-order kinetic model of neurotransmitter and receptor dynamics, accounting for NMDA and non-NMDA type chemical synapses. The biophysical origin of all 384 parameters in 24 channel variables supports direct interpretation of the results of adapting/tuning the parameters in terms of neurobiology. We present experimental results from the chip characterizing single neuron dynamics, single synapse dynamics, and multi-neuron network dynamics showing phase-locking behavior as a function of synaptic coupling strength. Uniform temporal scaling of the dynamics of membrane and gating variables is demonstrated by tuning a single current parameter, yielding variable speed output exceeding real time. The 0.5 CMOS chip measures 3 mm 3 mm, and consumes 1.29 mW.
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13
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Neuromorphic sensory systems. Curr Opin Neurobiol 2010; 20:288-95. [DOI: 10.1016/j.conb.2010.03.007] [Citation(s) in RCA: 210] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2010] [Revised: 03/22/2010] [Accepted: 03/24/2010] [Indexed: 11/17/2022]
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Hynna K, Boahen K. Nonlinear Influence of T-Channels in anin silicoRelay Neuron. IEEE Trans Biomed Eng 2009; 56:1734-43. [DOI: 10.1109/tbme.2009.2015579] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Rachmuth G, Poon CS. Transistor analogs of emergent iono-neuronal dynamics. HFSP JOURNAL 2008; 2:156-66. [PMID: 19404469 DOI: 10.2976/1.2905393] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/11/2007] [Accepted: 03/12/2008] [Indexed: 11/19/2022]
Abstract
Neuromorphic analog metal-oxide-silicon (MOS) transistor circuits promise compact, low-power, and high-speed emulations of iono-neuronal dynamics orders-of-magnitude faster than digital simulation. However, their inherently limited input voltage dynamic range vs power consumption and silicon die area tradeoffs makes them highly sensitive to transistor mismatch due to fabrication inaccuracy, device noise, and other nonidealities. This limitation precludes robust analog very-large-scale-integration (aVLSI) circuits implementation of emergent iono-neuronal dynamics computations beyond simple spiking with limited ion channel dynamics. Here we present versatile neuromorphic analog building-block circuits that afford near-maximum voltage dynamic range operating within the low-power MOS transistor weak-inversion regime which is ideal for aVLSI implementation or implantable biomimetic device applications. The fabricated microchip allowed robust realization of dynamic iono-neuronal computations such as coincidence detection of presynaptic spikes or pre- and postsynaptic activities. As a critical performance benchmark, the high-speed and highly interactive iono-neuronal simulation capability on-chip enabled our prompt discovery of a minimal model of chaotic pacemaker bursting, an emergent iono-neuronal behavior of fundamental biological significance which has hitherto defied experimental testing or computational exploration via conventional digital or analog simulations. These compact and power-efficient transistor analogs of emergent iono-neuronal dynamics open new avenues for next-generation neuromorphic, neuroprosthetic, and brain-machine interface applications.
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Silver R, Boahen K, Grillner S, Kopell N, Olsen KL. Neurotech for neuroscience: unifying concepts, organizing principles, and emerging tools. J Neurosci 2007; 27:11807-19. [PMID: 17978017 PMCID: PMC3275424 DOI: 10.1523/jneurosci.3575-07.2007] [Citation(s) in RCA: 72] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2007] [Revised: 09/07/2007] [Accepted: 09/09/2007] [Indexed: 02/05/2023] Open
Abstract
The ability to tackle analysis of the brain at multiple levels simultaneously is emerging from rapid methodological developments. The classical research strategies of "measure," "model," and "make" are being applied to the exploration of nervous system function. These include novel conceptual and theoretical approaches, creative use of mathematical modeling, and attempts to build brain-like devices and systems, as well as other developments including instrumentation and statistical modeling (not covered here). Increasingly, these efforts require teams of scientists from a variety of traditional scientific disciplines to work together. The potential of such efforts for understanding directed motor movement, emergence of cognitive function from neuronal activity, and development of neuromimetic computers are described by a team that includes individuals experienced in behavior and neuroscience, mathematics, and engineering. Funding agencies, including the National Science Foundation, explore the potential of these changing frontiers of research for developing research policies and long-term planning.
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Affiliation(s)
- Rae Silver
- Psychology Department, Barnard College of Columbia University, New York, New York 10027, USA.
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