Adaptive integration in the visual cortex by depressing recurrent cortical circuits

Response retention and apparent motion effect in visual cortex models

Apparent motion is a visual illusion in which stationary stimuli, flashing in distinct spatial locations at certain time intervals, are perceived as one stimulus moving between these locations. In the primary visual cortex, apparent-motion stimuli produce smooth spatio-temporal patterns of activity similar to those produced by continuously moving stimuli. An important prerequisite for producing such activity patterns is prolongation of responses to brief stimuli. Indeed, a brief stimulus can evoke in the visual cortex a long response, outlasting the stimulus by hundreds of milliseconds. Here we use firing-rate based models with simple ring structure, and biologically-detailed conductance-based refractory density (CBRD) model with retinotopic space representation to analyze the response retention and the origin of smooth profiles of activity in response to apparent-motion stimuli. We show that the strength of recurrent connectivity is the major factor that endorses neuronal networks with the ability for response retention. The same strengths of recurrent connections mediate the appearance of bump attractor in the ring models. Factors such as synaptic depression, NMDA receptor mediated currents, and conductances regulating spike adaptation influence response retention, but cannot substitute for the weakness of recurrent connections to reproduce response retention in models with weak connectivity. However, the weakness of lateral recurrent connections can be compensated by layering: in multi-layer models even with weaker connections the activity retains due to its feedforward propagation from layer to layer. Using CBRD model with retinotopic space representation we further show that smooth spatio-temporal profiles of activity in response to apparent-motion stimuli are produced in the models expressing response retention, but not in the models that fail to produce response retention. Together, these results demonstrate a link between response retention and the ability of neuronal networks to generate spatio-temporal patterns of activity, which are compatible with perception of apparent motion.

Canonical circuit computations for computer vision

Advanced computer vision mechanisms have been inspired by neuroscientific findings. However, with the focus on improving benchmark achievements, technical solutions have been shaped by application and engineering constraints. This includes the training of neural networks which led to the development of feature detectors optimally suited to the application domain. However, the limitations of such approaches motivate the need to identify computational principles, or motifs, in biological vision that can enable further foundational advances in machine vision. We propose to utilize structural and functional principles of neural systems that have been largely overlooked. They potentially provide new inspirations for computer vision mechanisms and models. Recurrent feedforward, lateral, and feedback interactions characterize general principles underlying processing in mammals. We derive a formal specification of core computational motifs that utilize these principles. These are combined to define model mechanisms for visual shape and motion processing. We demonstrate how such a framework can be adopted to run on neuromorphic brain-inspired hardware platforms and can be extended to automatically adapt to environment statistics. We argue that the identified principles and their formalization inspires sophisticated computational mechanisms with improved explanatory scope. These and other elaborated, biologically inspired models can be employed to design computer vision solutions for different tasks and they can be used to advance neural network architectures of learning.

Deeper neural network models better reflect how humans cope with contrast variation in object recognition

Visual inputs are far from ideal in everyday situations such as in the fog where the contrasts of input stimuli are low. However, human perception remains relatively robust to contrast variations. To provide insights about the underlying mechanisms of contrast invariance, we addressed two questions. Do contrast effects disappear along the visual hierarchy? Do later stages of the visual hierarchy contribute to contrast invariance? We ran a behavioral experiment where we manipulated the level of stimulus contrast and the involvement of higher-level visual areas through immediate and delayed backward masking of the stimulus. Backward masking led to significant drop in performance in our visual categorization task, supporting the role of higher-level visual areas in contrast invariance. To obtain mechanistic insights, we ran the same categorization task on three state-of the-art computational models of human vision each with a different depth in visual hierarchy. We found contrast effects all along the visual hierarchy, no matter how far into the hierarchy. Moreover, that final layers of deeper hierarchical models, which had been shown to be best models of final stages of the visual system, coped with contrast effects more effectively. These results suggest that, while contrast effects reach the final stages of the hierarchy, those stages play a significant role in compensating for contrast variations in the visual system.

Refractory density model of cortical direction selectivity: Lagged-nonlagged, transient-sustained, and On-Off thalamic neuron-based mechanisms and intracortical amplification

A biophysically detailed description of the mechanisms of the primary vision is still being developed. We have incorporated a simplified, filter-based description of retino-thalamic visual signal processing into the detailed, conductance-based refractory density description of the neuronal population activity of the primary visual cortex. We compared four mechanisms of the direction selectivity (DS), three of them being based on asymmetrical projections of different types of thalamic neurons to the cortex, distinguishing between (i) lagged and nonlagged, (ii) transient and sustained, and (iii) On and Off neurons. The fourth mechanism implies a lack of subcortical bias and is an epiphenomenon of intracortical interactions between orientation columns. The simulations of the cortical response to moving gratings have verified that first three mechanisms provide DS to an extent compared with experimental data and that the biophysical model realistically reproduces characteristics of the visual cortex activity, such as membrane potential, firing rate, and synaptic conductances. The proposed model reveals the difference between the mechanisms of both the intact and the silenced cortex, favoring the second mechanism. In the fourth case, DS is weaker but significant; it completely vanishes in the silenced cortex.DS in the On-Off mechanism derives from the nonlinear interactions within the orientation map. Results of simulations can help to identify a prevailing mechanism of DS in V1. This is a step towards a comprehensive biophysical modeling of the primary visual system in the frameworks of the population rate coding concept.

A major mechanism that underlies tuning of cortical neurons to the direction of a moving stimulus is still debated. Considering the visual cortex structured with orientation-selective columns, we have realized and compared in our biophysically detailed mathematical model four hypothetical mechanisms of the direction selectivity (DS) known from experiments. The present model accomplishes our previous model that was tuned to experimental data on excitability in slices and reproduces orientation tuning effects in vivo. In simulations, we have found that the convergence of inputs from so-called transient and sustained (or lagged and nonlagged) thalamic neurons in the cortex provides an initial bias for DS, whereas cortical interactions amplify the tuning. In the absence of any bias, DS emerges as an epiphenomenon of the orientation map. In the case of a biased convergence of On- and Off- thalamic inputs, DS emerges with the help of the intracortical interactions on the orientation map, also. Thus, we have proposed a comprehensive description of the primary vision and revealed characteristic features of different mechanisms of DS in the visual cortex with columnar structure.

Voluntary and involuntary contributions to perceptually guided saccadic choices resolved with millisecond precision

In the antisaccade task, which is considered a sensitive assay of cognitive function, a salient visual cue appears and the participant must look away from it. This requires sensory, motor-planning, and cognitive neural mechanisms, but what are their unique contributions to performance, and when exactly are they engaged? Here, by manipulating task urgency, we generate a psychophysical curve that tracks the evolution of the saccadic choice process with millisecond precision, and resolve the distinct contributions of reflexive (exogenous) and voluntary (endogenous) perceptual mechanisms to antisaccade performance over time. Both progress extremely rapidly, the former driving the eyes toward the cue early on (∼100 ms after cue onset) and the latter directing them away from the cue ∼40 ms later. The behavioral and modeling results provide a detailed, dynamical characterization of attentional and oculomotor capture that is not only qualitatively consistent across participants, but also indicative of their individual perceptual capacities.

Discrimination of Motion Direction in a Robot Using a Phenomenological Model of Synaptic Plasticity

Recognizing and tracking the direction of moving stimuli is crucial to the control of much animal behaviour. In this study, we examine whether a bio-inspired model of synaptic plasticity implemented in a robotic agent may allow the discrimination of motion direction of real-world stimuli. Starting with a well-established model of short-term synaptic plasticity (STP), we develop a microcircuit motif of spiking neurons capable of exhibiting preferential and nonpreferential responses to changes in the direction of an orientation stimulus in motion. While the robotic agent processes sensory inputs, the STP mechanism introduces direction-dependent changes in the synaptic connections of the microcircuit, resulting in a population of units that exhibit a typical cortical response property observed in primary visual cortex (V1), namely, direction selectivity. Visually evoked responses from the model are then compared to those observed in multielectrode recordings from V1 in anesthetized macaque monkeys, while sinusoidal gratings are displayed on a screen. Overall, the model highlights the role of STP as a complementary mechanism in explaining the direction selectivity and applies these insights in a physical robot as a method for validating important response characteristics observed in experimental data from V1, namely, direction selectivity.

The Role of Bottom-Up and Top-Down Cortical Interactions in Adaptation to Natural Scene Statistics

Adaptation is a mechanism by which cortical neurons adjust their responses according to recently viewed stimuli. Visual information is processed in a circuit formed by feedforward (FF) and feedback (FB) synaptic connections of neurons in different cortical layers. Here, the functional role of FF-FB streams and their synaptic dynamics in adaptation to natural stimuli is assessed in psychophysics and neural model. We propose a cortical model which predicts psychophysically observed motion adaptation aftereffects (MAE) after exposure to geometrically distorted natural image sequences. The model comprises direction selective neurons in V1 and MT connected by recurrent FF and FB dynamic synapses. Psychophysically plausible model MAEs were obtained from synaptic changes within neurons tuned to salient direction signals of the broadband natural input. It is conceived that, motion disambiguation by FF-FB interactions is critical to encode this salient information. Moreover, only FF-FB dynamic synapses operating at distinct rates predicted psychophysical MAEs at different adaptation time-scales which could not be accounted for by single rate dynamic synapses in either of the streams. Recurrent FF-FB pathways thereby play a role during adaptation in a natural environment, specifically in inducing multilevel cortical plasticity to salient information and in mediating adaptation at different time-scales.

Excitable neuronal assemblies with adaptation as a building block of brain circuits for velocity-controlled signal propagation

The time scale of neuronal network dynamics is determined by synaptic interactions and neuronal signal integration, both of which occur on the time scale of milliseconds. Yet many behaviors like the generation of movements or vocalizations of sounds occur on the much slower time scale of seconds. Here we ask the question of how neuronal networks of the brain can support reliable behavior on this time scale. We argue that excitable neuronal assemblies with spike-frequency adaptation may serve as building blocks that can flexibly adjust the speed of execution of neural circuit function. We show in simulations that a chain of neuronal assemblies can propagate signals reliably, similar to the well-known synfire chain, but with the crucial difference that the propagation speed is slower and tunable to the behaviorally relevant range. Moreover we study a grid of excitable neuronal assemblies as a simplified model of the somatosensory barrel cortex of the mouse and demonstrate that various patterns of experimentally observed spatial activity propagation can be explained.

Models of activity propagation in cortical networks have often been based on feedforward structures. Here we propose a model of activity propagation, called excitation chain, which does not need such a feedforward structure. The model is composed of excitable neural assemblies with spike-frequency adaptation, connected bidirectionally in a row or a grid. This prototypical neural circuit can propagate activity forwards, backwards or in both directions. Furthermore, the propagation speed is slow enough to trigger the generation of behaviors on the time scale of hundreds of milliseconds. A two-dimensional variant of the model is able to generate different activity propagation patterns, similar to spontaneous activity and stimulus-evoked responses in anesthetized mouse barrel cortex. We propose the excitation chain model as a basic component that can be employed in various ways to create spiking neural circuit models that generate signals on behavioral time scales. In contrast to abstract models of excitable media, our model makes an explicit link to the time scale of neuronal spikes.

Functional consequences of pre- and postsynaptic expression of synaptic plasticity

Growing experimental evidence shows that both homeostatic and Hebbian synaptic plasticity can be expressed presynaptically as well as postsynaptically. In this review, we start by discussing this evidence and methods used to determine expression loci. Next, we discuss the functional consequences of this diversity in pre- and postsynaptic expression of both homeostatic and Hebbian synaptic plasticity. In particular, we explore the functional consequences of a biologically tuned model of pre- and postsynaptically expressed spike-timing-dependent plasticity complemented with postsynaptic homeostatic control. The pre- and postsynaptic expression in this model predicts (i) more reliable receptive fields and sensory perception, (ii) rapid recovery of forgotten information (memory savings), and (iii) reduced response latencies, compared with a model with postsynaptic expression only. Finally, we discuss open questions that will require a considerable research effort to better elucidate how the specific locus of expression of homeostatic and Hebbian plasticity alters synaptic and network computations.This article is part of the themed issue 'Integrating Hebbian and homeostatic plasticity'.

Interocular contrast difference drives illusory 3D percept

Any processing delay between the two eyes can result in illusory 3D percepts for moving objects because of either changes in the pure disparities over time for disparity sensors or by changes to sensors that encode motion/disparity conjointly. This is demonstrated by viewing a fronto-parallel pendulum through a neutral density (ND) filter placed over one eye, resulting in the illusory 3D percept of the pendulum following an elliptical orbit in depth, the so-called Pulfrich phenomenon. Here we use a paradigm where a cylinder rotating in depth, defined by moving Gabor patches is presented at different interocular phases, generating strong to ambiguous depth percepts. This paradigm allows one to manipulate independently the contrast and the luminance of the patches to determine their influence on perceived motion-in-depth. Thus we show psychophysically that an interocular contrast difference can itself result in a similar illusory 3D percept of motion-in-depth. We argue that contrast, like luminance (ND filter) can modify the dynamics of visual neurons resulting in an interocular processing delay or an interocular velocity difference.

The Edge of Stability: Response Times and Delta Oscillations in Balanced Networks

The standard architecture of neocortex is a network with excitation and inhibition in closely maintained balance. These networks respond fast and with high precision to their inputs and they allow selective amplification of patterned signals. The stability of such networks is known to depend on balancing the strengths of positive and negative feedback. We here show that a second condition is required for stability which depends on the relative strengths and time courses of fast (AMPA) and slow (NMDA) currents in the excitatory projections. This condition also determines the response time of the network. We show that networks which respond quickly to an input are necessarily close to an oscillatory instability which resonates in the delta range. This instability explains the existence of neocortical delta oscillations and the emergence of absence epilepsy. Although cortical delta oscillations are a network-level phenomenon, we show that in non-pathological networks, individual neurons receive sufficient information to keep the network in the fast-response regime without sliding into the instability.

Many networks in the brain are finely balanced, with equal contributions from excitation and inhibition. Deviations from this balance, if for instance the total amount of excitation exceeds that of inhibition, lead to potentially devastating instabilities. Unlike previous work we consider the interaction between fast and slow excitatory connections. We show that not only the amount of excitation needs to be controlled to achieve network stability but also the ratio of slow to fast excitation. Furthermore, optimally fast network performance requires that networks approach instability. However, networks very close to this instability develop oscillations in the delta range (1–4Hz) which potentially cause absence epilepsy. We show that a normal (non-pathological) network can auto-regulate its activity to avoid the instability.

Mechanisms for Rapid Adaptive Control of Motion Processing in Macaque Visual Cortex

A key feature of neural networks is their ability to rapidly adjust their function, including signal gain and temporal dynamics, in response to changes in sensory inputs. These adjustments are thought to be important for optimizing the sensitivity of the system, yet their mechanisms remain poorly understood. We studied adaptive changes in temporal integration in direction-selective cells in macaque primary visual cortex, where specific hypotheses have been proposed to account for rapid adaptation. By independently stimulating direction-specific channels, we found that the control of temporal integration of motion at one direction was independent of motion signals driven at the orthogonal direction. We also found that individual neurons can simultaneously support two different profiles of temporal integration for motion in orthogonal directions. These findings rule out a broad range of adaptive mechanisms as being key to the control of temporal integration, including untuned normalization and nonlinearities of spike generation and somatic adaptation in the recorded direction-selective cells. Such mechanisms are too broadly tuned, or occur too far downstream, to explain the channel-specific and multiplexed temporal integration that we observe in single neurons. Instead, we are compelled to conclude that parallel processing pathways are involved, and we demonstrate one such circuit using a computer model. This solution allows processing in different direction/orientation channels to be separately optimized and is sensible given that, under typical motion conditions (e.g., translation or looming), speed on the retina is a function of the orientation of image components.

SIGNIFICANCE STATEMENT

Many neurons in visual cortex are understood in terms of their spatial and temporal receptive fields. It is now known that the spatiotemporal integration underlying visual responses is not fixed but depends on the visual input. For example, neurons that respond selectively to motion direction integrate signals over a shorter time window when visual motion is fast and a longer window when motion is slow. We investigated the mechanisms underlying this useful adaptation by recording from neurons as they responded to stimuli moving in two different directions at different speeds. Computer simulations of our results enabled us to rule out several candidate theories in favor of a model that integrates across multiple parallel channels that operate at different time scales.

Stability of Neuronal Networks with Homeostatic Regulation

Neurons are equipped with homeostatic mechanisms that counteract long-term perturbations of their average activity and thereby keep neurons in a healthy and information-rich operating regime. While homeostasis is believed to be crucial for neural function, a systematic analysis of homeostatic control has largely been lacking. The analysis presented here analyses the necessary conditions for stable homeostatic control. We consider networks of neurons with homeostasis and show that homeostatic control that is stable for single neurons, can destabilize activity in otherwise stable recurrent networks leading to strong non-abating oscillations in the activity. This instability can be prevented by slowing down the homeostatic control. The stronger the network recurrence, the slower the homeostasis has to be. Next, we consider how non-linearities in the neural activation function affect these constraints. Finally, we consider the case that homeostatic feedback is mediated via a cascade of multiple intermediate stages. Counter-intuitively, the addition of extra stages in the homeostatic control loop further destabilizes activity in single neurons and networks. Our theoretical framework for homeostasis thus reveals previously unconsidered constraints on homeostasis in biological networks, and identifies conditions that require the slow time-constants of homeostatic regulation observed experimentally.

Despite their apparent robustness many biological system work best in controlled environments, the tightly regulated mammalian body temperature being a good example. Biological homeostatic control systems, not unlike those used in engineering, ensure that the right operating conditions are met. Similarly, neurons appear to adjust the amount of activity they produce to be neither too high nor too low by, among other ways, regulating their excitability. However, for no apparent reason the neural homeostatic processes are very slow, taking hours or even days to regulate the neuron. Here we use results from mathematical control theory to examine under which conditions such slow control is necessary to prevent instabilities that lead to strong, sustained oscillations in the activity. Our results lead to a deeper understanding of neural homeostasis and can help the design of artificial neural systems.

A review of the methods for neuronal response latency estimation

Neuronal response latency is usually vaguely defined as the delay between the stimulus onset and the beginning of the response. It contains important information for the understanding of the temporal code. For this reason, the detection of the response latency has been extensively studied in the last twenty years, yielding different estimation methods. They can be divided into two classes, one of them including methods based on detecting an intensity change in the firing rate profile after the stimulus onset and the other containing methods based on detection of spikes evoked by the stimulation using interspike intervals and spike times. The aim of this paper is to present a review of the main techniques proposed in both classes, highlighting their advantages and shortcomings.

Short-term synaptic plasticity in the deterministic Tsodyks-Markram model leads to unpredictable network dynamics

Short-term synaptic plasticity strongly affects the neural dynamics of cortical networks. The Tsodyks and Markram (TM) model for short-term synaptic plasticity accurately accounts for a wide range of physiological responses at different types of cortical synapses. Here, we report a route to chaotic behavior via a Shilnikov homoclinic bifurcation that dynamically organizes some of the responses in the TM model. In particular, the presence of such a homoclinic bifurcation strongly affects the shape of the trajectories in the phase space and induces highly irregular transient dynamics; indeed, in the vicinity of the Shilnikov homoclinic bifurcation, the number of population spikes and their precise timing are unpredictable and highly sensitive to the initial conditions. Such an irregular deterministic dynamics has its counterpart in stochastic/network versions of the TM model: The existence of the Shilnikov homoclinic bifurcation generates complex and irregular spiking patterns and--acting as a sort of springboard--facilitates transitions between the down-state and unstable periodic orbits. The interplay between the (deterministic) homoclinic bifurcation and stochastic effects may give rise to some of the complex dynamics observed in neural systems.

Probabilistic inference of short-term synaptic plasticity in neocortical microcircuits

Short-term synaptic plasticity is highly diverse across brain area, cortical layer, cell type, and developmental stage. Since short-term plasticity (STP) strongly shapes neural dynamics, this diversity suggests a specific and essential role in neural information processing. Therefore, a correct characterization of short-term synaptic plasticity is an important step towards understanding and modeling neural systems. Phenomenological models have been developed, but they are usually fitted to experimental data using least-mean-square methods. We demonstrate that for typical synaptic dynamics such fitting may give unreliable results. As a solution, we introduce a Bayesian formulation, which yields the posterior distribution over the model parameters given the data. First, we show that common STP protocols yield broad distributions over some model parameters. Using our result we propose a experimental protocol to more accurately determine synaptic dynamics parameters. Next, we infer the model parameters using experimental data from three different neocortical excitatory connection types. This reveals connection-specific distributions, which we use to classify synaptic dynamics. Our approach to demarcate connection-specific synaptic dynamics is an important improvement on the state of the art and reveals novel features from existing data.

The countermanding task revisited: fast stimulus detection is a key determinant of psychophysical performance

The countermanding task is a standard method for assessing cognitive/inhibitory control over action and for investigating its neural correlates. In it, the subject plans a movement and either executes it, if no further instruction is given, or attempts to prevent it, if a stop signal is shown. Through various experimental manipulations, many studies have sought to characterize the inhibitory mechanisms thought to be at work in the task, typically using an inferred, model-dependent metric called the stop-signal reaction time. This approach has consistently overlooked the impact of perceptual evaluation on performance. Through analytical work and computer simulations, here we show that psychophysical performance in the task can be easily understood as the result of an ongoing motor plan that is modified (decelerated) by the outcome of a rapid sensory detection process. Notably, no specific assumptions about hypothetical inhibitory mechanisms are needed. This modeling framework achieves four things: (1) it replicates and reconciles behavioral results in numerous variants of the countermanding task; (2) it provides a new, objective metric for characterizing task performance that is more effective than the stop-signal reaction time; (3) it shows that the time window over which detection of a high-visibility stimulus effectively occurs is extremely short (∼20 ms); and (4) it indicates that modulating neuronal latencies and the buildup rates of developing motor plans are two key neural mechanisms for controlling action. The results suggest that manipulations of the countermanding task often cause changes in perceptual detection processes, and not necessarily in inhibition.

Distinct feedforward and intrinsic neurons in posterior inferotemporal cortex revealed by in vivo connection imaging

We investigated circuits for object recognition in macaque anterior (TE) and posterior inferotemporal cortex (TEO), using a two-step method with in vivo anatomical imaging. In step 1, red fluorescent tracer was injected into TE to reveal and Pre-target patches of feedforward neurons in TEO. In step 2, these were visualized on the cortical surface in vivo, and injected with green fluorescent tracer. Histological processing revealed that patches >500 μm from the injection site in TEO consisted of intermingled green TEO intrinsically projecting neurons and red TEO-to-TE neurons, with only few double-labeled neurons. In contrast, patches near the injection site in TEO contained many double-labeled neurons. Two parallel, spatially intermingled circuits are suggested: (1) TEO neurons having very local intrinsic collaterals and projection to TE (2) TEO neurons projecting more widely in the intrinsic network, but not to TE. These parallel systems might be specialized for, respectively, fast vs. highly processed signals.

The effect of neural adaptation on population coding accuracy

Most neurons in the primary visual cortex initially respond vigorously when a preferred stimulus is presented, but adapt as stimulation continues. The functional consequences of adaptation are unclear. Typically a reduction of firing rate would reduce single neuron accuracy as less spikes are available for decoding, but it has been suggested that on the population level, adaptation increases coding accuracy. This question requires careful analysis as adaptation not only changes the firing rates of neurons, but also the neural variability and correlations between neurons, which affect coding accuracy as well. We calculate the coding accuracy using a computational model that implements two forms of adaptation: spike frequency adaptation and synaptic adaptation in the form of short-term synaptic plasticity. We find that the net effect of adaptation is subtle and heterogeneous. Depending on adaptation mechanism and test stimulus, adaptation can either increase or decrease coding accuracy. We discuss the neurophysiological and psychophysical implications of the findings and relate it to published experimental data.

Accurate multiplication with noisy spiking neurons

Multiplication is an operation which is fundamental in mathematics, but it is also relevant for many sensory computations in the nervous system. Nevertheless, despite a number of suggestions in the literature, it is not known how multiplication is implemented in neural circuitry. We propose a simple feedforward circuit that combines a rate model of neural activity and a realistic neural input-output relation to accurately and efficiently implement multiplication of two rate-coded quantities. By simulating a network of integrate and fire neurons, we demonstrate the functional efficiency of the circuit. Finally we discuss how the model can be tested experimentally.

Visual stimulation decorrelates neuronal activity

The accuracy of neuronal encoding depends on the response statistics of individual neurons and the correlation of the activity between different neurons. Here, the dynamics of the neuronal response statistics in the anterior superior temporal sulcus of the macaque monkey is described. A transient reduction in the normalized trial-by-trial variability and decorrelation of the responses with both the activity of other neurons and previous activity of the same neuron are found at response onset. The variability of neuronal activity and its correlation structure return to the levels observed in the resting state 50-100 ms after response onset, except for marked increases in the signal correlation between neurons. The transient changes in the response statistics are seen even if there is little or no stimulus-elicited activity, indicating the effect is due to network properties rather than to activity changes per se. Modeling also indicates that the observed variations in response variability and correlation structure of the neuronal activity over time cannot be attributed to changes in firing rate. However, a reset of the underlying spike-generating process, possibly due to the driving input changing from recurrent to feedforward inputs, captures most of the observed changes. The nonstationarity indicated by the changes in correlation structure around response onset increases coding efficiency: compared with the mutual information calculated without regard to the transitory changes, the decorrelation increases the information conveyed by the initial response of modeled neuronal pairs by ≤ 4% and suggests that an integration time of as little as 50 ms is sufficient to extract 95% the available information during the initial response period.

Contrast gain control and cortical TrkB signaling shape visual acuity

During development and aging and in amblyopia, visual acuity is far below the limitations set by the retina. Expression of brain-derived neurotrophic factor (BDNF) in the visual cortex is reduced in these situations. We asked whether neurotrophic tyrosine kinase receptor, type 2 (TrkB) regulates cortical visual acuity in adult mice. We found that genetically interfering with TrkB/BDNF signaling in pyramidal cells in the mature visual cortex reduced synaptic strength and resulted in a loss of neural responses to high spatial-frequency stimuli. Responses to low spatial-frequency stimuli were unaffected. This selective loss was not accompanied by a change in receptive field sizes or plasticity, but apparent contrast was reduced. Our results indicate that a dependence on spatial frequency in the Heeger normalization model explains this selective effect of contrast reduction on high-resolution vision and suggest that it involves contrast gain control operating in the visual cortex.

Modelling spike trains and extracting response latency with Bayesian binning

The peristimulus time histogram (PSTH) and the spike density function (SDF) are commonly used in the analysis of neurophysiological data. The PSTH is usually obtained by binning spike trains, the SDF being a (Gaussian) kernel smoothed version of the PSTH. While selection of the bin width or kernel size is often relatively arbitrary there have been recent attempts to remedy this situation (Shimazaki and Shinomoto, 2007c,b,a). We further develop an exact Bayesian generative model approach to estimating PSTHs (Endres et al., 2008) and demonstrate its superiority to competing methods using data from early (LGN) and late (STSa) visual areas. We also highlight the advantages of our scheme's automatic complexity control and generation of error bars. Additionally, our approach allows extraction of excitatory and inhibitory response latency from spike trains in a principled way, both on repeated and single trial data. We show that the method can be applied to data with high background firing rates and inhibitory responses (LGN) as well as to data with low firing rate and excitatory responses (STSa). Furthermore, we demonstrate on simulated data that our latency extraction method works for a range of signal-to-noise ratios and background firing rates. While further studies are needed to examine the sensitivity of our method to, for example, gradual changes in firing rate and adaptation, the current results suggest that Bayesian binning is a powerful method for the estimation of firing rate and the extraction response latency from neuronal spike trains.

Contrast induced changes in response latency depend on stimulus specificity

Neurones in visual cortex show increasing response latency with decreasing stimulus contrast. Neurophysiological recordings from neurones in inferior temporal cortex (IT) and the superior temporal sulcus (STS), show that the increment in response latency with decreasing stimulus contrast is considerably greater in higher visual areas than that seen in primary visual cortex. This suggests that the majority of the latency change is not retinal or V1 in origin, instead each cortical processing area adds latency at low contrast. I show that, as in earlier visual areas, response latency is more strongly dependent on stimulus contrast than stimulus identity. There is large variation in the extent to which response latency increases with decreasing stimulus contrast. I show that this between cell variability is, at least in part, related to the stimulus specificity of the neurones: the increase in response latency as stimulus contrast decreases is greater for neurones that respond to few stimuli compared to neurones that respond to many stimuli.

Recurrent networks with short term synaptic depression

Cortical circuitry shows an abundance of recurrent connections. A widely used model that relies on recurrence is the ring attractor network, which has been used to describe phenomena as diverse as working memory, visual processing and head direction cells. Commonly, the synapses in these models are static. Here, we examine the behaviour of ring attractor networks when the recurrent connections are subject to short term synaptic depression, as observed in many brain regions. We find that in the presence of a uniform background current, the network activity can be in either of three states: a stationary attractor state, a uniform state, or a rotating attractor state. The rotation speed can be adjusted over a large range by changing the background current, opening the possibility to use the network as a variable frequency oscillator or pattern generator. Finally, using simulations we extend the network to two-dimensional fields and find a rich range of possible behaviours.

Understanding pitch perception as a hierarchical process with top-down modulation

Pitch is one of the most important features of natural sounds, underlying the perception of melody in music and prosody in speech. However, the temporal dynamics of pitch processing are still poorly understood. Previous studies suggest that the auditory system uses a wide range of time scales to integrate pitch-related information and that the effective integration time is both task- and stimulus-dependent. None of the existing models of pitch processing can account for such task- and stimulus-dependent variations in processing time scales. This study presents an idealized neurocomputational model, which provides a unified account of the multiple time scales observed in pitch perception. The model is evaluated using a range of perceptual studies, which have not previously been accounted for by a single model, and new results from a neurophysiological experiment. In contrast to other approaches, the current model contains a hierarchy of integration stages and uses feedback to adapt the effective time scales of processing at each stage in response to changes in the input stimulus. The model has features in common with a hierarchical generative process and suggests a key role for efferent connections from central to sub-cortical areas in controlling the temporal dynamics of pitch processing.